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Support subsetting by more than one factor #1313

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arteymix opened this issue Dec 24, 2024 · 0 comments
Open
3 tasks

Support subsetting by more than one factor #1313

arteymix opened this issue Dec 24, 2024 · 0 comments
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enhancement Enhance the code or user experience low priority single cell Issues related to single-cell data support

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@arteymix
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This is a core feature we need for analyzing single cell data by subset. When single-cell data is aggregated, we create subsets by the cell type factor. There might be a second factor by which we want to subset (i.e. a brain region).

  • modify the DE config to allow a list of factors to subset by
  • modify the analysis result set model to have a list of subset factors (or a second factor value like we do for contrast)
  • modify the CLI to allow multiple subset factor arguments

The order of factors is not very important, although for single-cell we need to aggregate first by cell type to obtain "raw" vectors. Each subset will use the original EE as its source experiment.

@arteymix arteymix added low priority single cell Issues related to single-cell data support enhancement Enhance the code or user experience labels Dec 24, 2024
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Labels
enhancement Enhance the code or user experience low priority single cell Issues related to single-cell data support
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