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Infer sample association from cell ID overlaps #1315

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Tracked by #1306
arteymix opened this issue Jan 12, 2025 · 1 comment
Open
Tracked by #1306

Infer sample association from cell ID overlaps #1315

arteymix opened this issue Jan 12, 2025 · 1 comment
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single cell Issues related to single-cell data support

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@arteymix
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arteymix commented Jan 12, 2025

We can alleviate the burden of matching sample IDs with BioAssay name on curators by looking at overlap between cell IDs and building that association ourselves.

I think a simple metric to look at is the number of overlapping IDs between the cell IDs from the single-cell dimension and those found in the annotation file, and match those by the maximum value.

@arteymix arteymix self-assigned this Jan 12, 2025
@arteymix arteymix added the single cell Issues related to single-cell data support label Jan 12, 2025
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This is completed, I'll have the curator test it out tomorrow.

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Labels
single cell Issues related to single-cell data support
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