From 6ffb6dd6a3e76628f7238e67d7058b5dcea32574 Mon Sep 17 00:00:00 2001 From: Ethan Li Date: Wed, 28 Feb 2024 08:46:27 -0800 Subject: [PATCH] Initialize files from the main pscopehat node-red-dashboard --- .github/workflows/build.yml | 136 + Dockerfile | 11 + flows.json | 10965 ++++++++++++++++++++++++++++++++++ package-lock.json | 1113 ++++ package.json | 21 + 5 files changed, 12246 insertions(+) create mode 100644 .github/workflows/build.yml create mode 100644 Dockerfile create mode 100644 flows.json create mode 100644 package-lock.json create mode 100644 package.json diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml new file mode 100644 index 0000000..1fae5b8 --- /dev/null +++ b/.github/workflows/build.yml @@ -0,0 +1,136 @@ +name: Build Docker container image for the Node-RED dashboard + +on: + push: + branches: + - 'main' + - 'beta' + - 'stable' + pull_request: + merge_group: + workflow_dispatch: + inputs: + git-ref: + description: 'Git ref (optional)' + required: false + +env: + REGISTRY_IMAGE: ghcr.io/planktoscope/segmenter-node-red-dashboard + +jobs: + build: + runs-on: ubuntu-latest + strategy: + fail-fast: false + matrix: + platform: + - linux/amd64 + - linux/arm64 + - linux/arm/v7 + permissions: + contents: read + packages: write + steps: + - uses: actions/checkout@v4 + + - name: Prepare environment variables + run: | + platform=${{ matrix.platform }} + echo "PLATFORM_PAIR=${platform//\//-}" >> $GITHUB_ENV + + # Build and publish Docker container image + - name: Get Docker metadata + id: meta + uses: docker/metadata-action@v5 + with: + images: ${{ env.REGISTRY_IMAGE }} + tags: | + type=sha + + - name: Set up QEMU + uses: docker/setup-qemu-action@v3 + + - name: Set up Docker Buildx + uses: docker/setup-buildx-action@v3 + + - name: Log in to GitHub Container Registry + uses: docker/login-action@v3 + with: + registry: ghcr.io + username: ${{ github.repository_owner }} + password: ${{ secrets.GITHUB_TOKEN }} + + - name: Build and push by digest + id: build + uses: docker/build-push-action@v5 + with: + pull: true + push: ${{ github.event_name == 'pull_request' || github.event_name == 'push' || github.event_name == 'push tag' }} + platforms: ${{ matrix.platform }} + tags: ${{ env.REGISTRY_IMAGE }} + labels: ${{ steps.meta.outputs.labels }} + cache-from: type=gha,scope=build-${{ matrix.platform }} + cache-to: type=gha,mode=max,scope=build-${{ matrix.platform }} + outputs: type=image,name=${{ env.REGISTRY_IMAGE }},push-by-digest=true,name-canonical=true,push=true + + - name: Export digest + run: | + mkdir -p /tmp/digests + digest="${{ steps.build.outputs.digest }}" + touch "/tmp/digests/${digest#sha256:}" + + - name: Upload digest + uses: actions/upload-artifact@v4 + with: + name: digests-${{ env.PLATFORM_PAIR }} + path: /tmp/digests/* + if-no-files-found: error + retention-days: 1 + + merge: + runs-on: ubuntu-latest + needs: + - build + steps: + - name: Download digests + uses: actions/download-artifact@v4 + with: + path: /tmp/digests + pattern: digests-* + merge-multiple: true + + # Build and publish Docker container image + - name: Get Docker metadata + id: meta + uses: docker/metadata-action@v5 + with: + images: ${{ env.REGISTRY_IMAGE }} + tags: | + type=match,pattern=v(.*),group=1 + type=edge,branch=main + type=ref,event=branch,enable=${{ github.ref != format('refs/heads/{0}', 'main') && github.ref != format('refs/heads/{0}', 'main') }} + type=ref,event=pr + type=raw,value=latest,enable=${{ github.ref == format('refs/heads/{0}', 'stable') }} + type=sha + + - name: Set up Docker Buildx + uses: docker/setup-buildx-action@v3 + + - name: Log in to GitHub Container Registry + uses: docker/login-action@v3 + if: github.event_name == 'pull_request' || github.event_name == 'push' || github.event_name == 'push tag' + with: + registry: ghcr.io + username: ${{ github.repository_owner }} + password: ${{ secrets.GITHUB_TOKEN }} + + - name: Create manifest list and push + working-directory: /tmp/digests + if: github.event_name == 'pull_request' || github.event_name == 'push' || github.event_name == 'push tag' + run: | + docker buildx imagetools create $(jq -cr '.tags | map("-t " + .) | join(" ")' <<< "$DOCKER_METADATA_OUTPUT_JSON") \ + $(printf '${{ env.REGISTRY_IMAGE }}@sha256:%s ' *) + + - name: Inspect image + run: | + docker buildx imagetools inspect ${{ env.REGISTRY_IMAGE }}:${{ steps.meta.outputs.version }} diff --git a/Dockerfile b/Dockerfile new file mode 100644 index 0000000..0a27408 --- /dev/null +++ b/Dockerfile @@ -0,0 +1,11 @@ +FROM nodered/node-red:3.1.5-18-minimal + +WORKDIR /data +COPY package.json /data +COPY package-lock.json /data +RUN npm install --unsave-perm --no-update-notifier --no-fund --only=production +WORKDIR /usr/src/node-red + +COPY settings.js /data/settings.js +COPY flows.json /data/flows.json + diff --git a/flows.json b/flows.json new file mode 100644 index 0000000..d1fddf3 --- /dev/null +++ b/flows.json @@ -0,0 +1,10965 @@ +[ + { + "id": 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"cb95299c.2817c8", + "name": "spacer", + "group": "46be9c86.dea684", + "order": 4, + "width": 3, + "height": 1 + }, + { + "id": "5f98f5f140f0ecde", + "type": "ui_spacer", + "z": "cb95299c.2817c8", + "name": "spacer", + "group": "46be9c86.dea684", + "order": 6, + "width": 3, + "height": 1 + }, + { + "id": "7bc0a4c416e4545c", + "type": "ui_group", + "name": "Culture Date and Time", + "tab": "737ec584.2eea2c", + "order": 2, + "disp": true, + "width": "10", + "collapse": false, + "className": "" + }, + { + "id": "6c31ad948a9d62fd", + "type": "ui_spacer", + "z": "b771c342.49603", + "name": "spacer", + "group": "3e1ba03d.f01d8", + "order": 5, + "width": 10, + "height": 1 + }, + { + "id": "d65a6ccdeb9d35d6", + "type": "ui_spacer", + "z": "b771c342.49603", + "name": "spacer", + "group": "fc5e4e6f.5b1c8", + "order": 3, + "width": 1, + "height": 1 + }, + { + "id": "6465bdd5.15eb8c", + "type": "file in", + "z": "1c24ad9c.bebec2", + "name": "", + "filename": "/home/pi/PlanktoScope/config.json", + "filenameType": "str", + "format": "utf8", + "chunk": false, + "sendError": false, + "encoding": "none", + "x": 560, + "y": 60, + "wires": [ + [ + "15ceb135.6628bf" + ] + ], + "info": "# PlanktoScope Help\nThis Node will read the content of the file named **config.txt** containing all the input placeholders.\n" + }, + { + "id": "15ceb135.6628bf", + "type": "json", + "z": "1c24ad9c.bebec2", + "name": "config.json", + "property": "payload", + "action": "", + "pretty": false, + "x": 730, + "y": 60, + "wires": [ + [ + "ad541674.4791c8" + ] + ] + }, + { + "id": "7205d267.36adcc", + "type": "file", + "z": "1c24ad9c.bebec2", + "name": "", + "filename": "/home/pi/PlanktoScope/config.json", + "appendNewline": true, + "createDir": true, + "overwriteFile": "true", + "encoding": "none", + "x": 990, + "y": 160, + "wires": [ + [] + ] + }, + { + "id": "2e6ddf51.c0dba", + "type": "json", + "z": "1c24ad9c.bebec2", + "name": "config.json", + "property": "payload", + "action": "str", + "pretty": true, + "x": 730, + "y": 160, + "wires": [ + [ + "7205d267.36adcc" + ] + ] + }, + { + "id": "ad541674.4791c8", + "type": "function", + "z": "1c24ad9c.bebec2", + "name": "Global Set", + "func": "global.set(\"config_keys\", Object.keys(msg.payload));\n\nfor (const key in msg.payload) {\n global.set(key, msg.payload[key]);\n}\n\nreturn msg;", + "outputs": 1, + "timeout": "", + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 910, + "y": 60, + "wires": [ + [] + ] + }, + { + "id": "3e9a33c.141384c", + "type": "inject", + "z": "1c24ad9c.bebec2", + "name": "Load config", + "props": [ + { + "p": "topic", + "vt": "str" + } + ], + "repeat": "", + "crontab": "", + "once": true, + "onceDelay": 0.1, + "topic": "", + "payloadType": "str", + "x": 230, + "y": 60, + "wires": [ + [ + "6465bdd5.15eb8c" + ] + ] + }, + { + "id": "3ad9835.08c937c", + "type": "function", + "z": "1c24ad9c.bebec2", + "name": "get config payload", + "func": "keys = global.get(\"config_keys\")\n\nvar payload = {}\n\nkeys.forEach(function(item, index, array) {\n payload[item] = global.get(item);\n})\n\nreturn {\"payload\": payload};", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 410, + "y": 160, + "wires": [ + [ + "2e6ddf51.c0dba" + ] + ] + }, + { + "id": "f439663c.8abd3", + "type": "ui_ui_control", + "z": "1c24ad9c.bebec2", + "name": "Connect Event", + "events": "connect", + "x": 900, + "y": 100, + "wires": [ + [] + ] + }, + { + "id": "82099021.9ceb08", + "type": "file", + "z": "4ed26b8b.253504", + "name": "", + "filename": "/home/pi/PlanktoScope/hardware.json", + "appendNewline": true, + "createDir": true, + "overwriteFile": "true", + "encoding": "none", + "x": 660, + "y": 40, + "wires": [ + [] + ] + }, + { + "id": "bb0a8725.a1849", + "type": "json", + "z": "4ed26b8b.253504", + "name": "Create JSON", + "property": "payload", + "action": "str", + "pretty": true, + "x": 490, + "y": 40, + "wires": [ + [ + "82099021.9ceb08" + ] + ] + }, + { + "id": "53d163be.47cf24", + "type": "function", + "z": "4ed26b8b.253504", + "name": "Update and retrieve hardware_conf", + "func": "// change global\nhardware_conf = global.get(\"hardware_conf\");\n\nif (msg.topic == \"process_pixel_fixed\" && msg.payload == 0){\n delete hardware_conf[msg.topic]\n delete msg.topic\n}\n\nif (msg.topic !== null && msg.topic !== undefined){\n hardware_conf[msg.topic] = msg.payload;\n global.set(\"hardware_conf\", hardware_conf);\n}\n\nreturn {\"payload\": hardware_conf};", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 240, + "y": 40, + "wires": [ + [ + "bb0a8725.a1849" + ] + ] + }, + { + "id": "0f16258953fae292", + "type": "file in", + "z": "b7861ce703215a01", + "name": "", + "filename": "/home/pi/PlanktoScope/hardware.json", + "filenameType": "str", + "format": "utf8", + "chunk": false, + "sendError": false, + "encoding": "none", + "allProps": false, + "x": 250, + "y": 40, + "wires": [ + [ + "81c516291ab19acd" + ] + ], + "info": "# PlanktoScope Help\nThis Node will read the content of the file named **config.txt** containing all the input placeholders.\n" + }, + { + "id": "81c516291ab19acd", + "type": "json", + "z": "b7861ce703215a01", + "name": "Parse JSON", + "property": "payload", + "action": "", + "pretty": false, + "x": 510, + "y": 40, + "wires": [ + [ + "d0fbcd200cd09981" + ] + ] + }, + { + "id": "d0fbcd200cd09981", + "type": "change", + "z": "b7861ce703215a01", + "name": "", + "rules": [ + { + "t": "set", + "p": "hardware_conf", + "pt": "global", + "to": "payload", + "tot": "msg" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 730, + "y": 40, + "wires": [ + [] + ] + }, + { + "id": "4e78af2d.90be7", + "type": "ui_ui_control", + "z": "eaae323a.31b3", + "name": "", + "events": "change", + "x": 440, + "y": 160, + "wires": [ + [] + ] + }, + { + "id": "7789839d.69b48c", + "type": "ui_template", + "z": "eaae323a.31b3", + "group": "4e0cd5ea.17e59c", + "name": "Optic Configuration", + "order": 1, + "width": 4, + "height": 4, + "format": "\n \n
Optic Configuration
\n", + "storeOutMessages": true, + "fwdInMessages": true, + "resendOnRefresh": false, + "templateScope": "local", + "x": 130, + "y": 100, + "wires": [ + [ + "4e78af2d.90be7" + ] + ] + }, + { + "id": "6ea6c306.f9c12c", + "type": "ui_template", + "z": "eaae323a.31b3", + "group": "ef590206.24f6", + "name": "Fluidic Acquisition", + "order": 1, + "width": 4, + "height": 4, + "format": "\n \n
Fluidic Acquisition
\n", + "storeOutMessages": true, + "fwdInMessages": true, + "resendOnRefresh": false, + "templateScope": "local", + "x": 130, + "y": 140, + "wires": [ + [ + "4e78af2d.90be7" + ] + ] + }, + { + "id": "bb9eb153.9e36c", + "type": "ui_template", + "z": "eaae323a.31b3", + "group": "ae8f6620.073358", + "name": "Segmentation", + "order": 1, + "width": 4, + "height": 4, + "format": "\n \n
Segmentation
\n", + "storeOutMessages": true, + "fwdInMessages": true, + "resendOnRefresh": false, + "templateScope": "local", + "x": 140, + "y": 180, + "wires": [ + [ + "4e78af2d.90be7" + ] + ] + }, + { + "id": "eaf8ee7f.96f44", + "type": "ui_template", + "z": "eaae323a.31b3", + "group": "196518b2.4d53b7", + "name": "Gallery", + "order": 1, + "width": 4, + "height": 4, + "format": "\n \n
Gallery
\n", + "storeOutMessages": true, + "fwdInMessages": true, + "resendOnRefresh": false, + "templateScope": "local", + "x": 160, + "y": 220, + "wires": [ + [ + "4e78af2d.90be7" + ] + ] + }, + { + "id": "c1b1469.9650eb8", + "type": "ui_template", + "z": "eaae323a.31b3", + "group": "777a7c33.fcd804", + "name": "System Monitoring", + "order": 1, + "width": 4, + "height": 4, + "format": "\n \n
System Monitoring
\n", + "storeOutMessages": true, + "fwdInMessages": true, + "resendOnRefresh": false, + "templateScope": "local", + "x": 130, + "y": 260, + "wires": [ + [ + "4e78af2d.90be7" + ] + ] + }, + { + "id": "abafd6e6.04a5f8", + "type": "ui_template", + "z": "eaae323a.31b3", + "group": "6f97e7ae.270c48", + "name": "Sample", + "order": 1, + "width": 4, + "height": 4, + "format": "\n \n
Sample
\n
\n In doubt? Start Here!\n", + "storeOutMessages": true, + "fwdInMessages": true, + "resendOnRefresh": false, + "templateScope": "local", + "x": 160, + "y": 60, + "wires": [ + [ + "4e78af2d.90be7" + ] + ] + }, + { + "id": "dab82064.26a8d", + "type": "ui_button", + "z": "eaae323a.31b3", + "name": "Unlock button", + "group": "f3ca28ef.4df0a8", + "order": 2, + "width": 0, + "height": 0, + "passthru": false, + "label": "Unlock button", + "tooltip": "", + "color": "", + "bgcolor": "", + "icon": "", + "payload": "shutdown", + "payloadType": "flow", + "topic": "", + "x": 120, + "y": 380, + "wires": [ + [ + "6c3a3b4.78cad44" + ] + ] + }, + { + "id": "1c658761.b852a1", + "type": "ui_toast", + "z": "eaae323a.31b3", + "position": "dialog", + "displayTime": "3", + "highlight": "", + "sendall": true, + "outputs": 1, + "ok": "YES PLEASE", + "cancel": "NO!", + "raw": false, + "topic": "Are you sure?", + "name": "Confirmation message", + "x": 800, + "y": 380, + "wires": [ + [ + "8f1b8e23.daafe" + ] + ] + }, + { + "id": "a48ff63f.db5e18", + "type": "inject", + "z": "eaae323a.31b3", + "name": "disabled", + "props": [ + { + "p": "enabled", + "v": "false", + "vt": "bool" + } + ], + "repeat": "", + "crontab": "", + "once": true, + "onceDelay": 0.1, + "topic": "", + "x": 140, + "y": 420, + "wires": [ + [ + "d58039a9.6e7928" + ] + ] + }, + { + "id": "b67a7147.65fcd8", + "type": "ui_button", + "z": "eaae323a.31b3", + "name": "Shutdown button", + "group": "f3ca28ef.4df0a8", + "order": 4, + "width": 0, + "height": 0, + "passthru": false, + "label": "Shutdown", + "tooltip": "", + "color": "", + "bgcolor": "#AD1625", + "icon": "fa-power-off fa-2x", + "payload": "Do you want to turn the machine off now?", + "payloadType": "str", + "topic": "", + "x": 550, + "y": 380, + "wires": [ + [ + "1c658761.b852a1" + ] + ] + }, + { + "id": "d58039a9.6e7928", + "type": "change", + "z": "eaae323a.31b3", + "name": "", + "rules": [ + { + "t": "set", + "p": "shutdown", + "pt": "flow", + "to": "false", + "tot": "bool" + }, + { + "t": "set", + "p": "enabled", + "pt": "msg", + "to": "shutdown", + "tot": "flow" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 320, + "y": 420, + "wires": [ + [ + "b67a7147.65fcd8" + ] + ] + }, + { + "id": "6c3a3b4.78cad44", + "type": "function", + "z": "eaae323a.31b3", + "name": "Toggle", + "func": "flow.set(\"shutdown\", !flow.get(\"shutdown\"))\nmsg.enabled = flow.get(\"shutdown\")\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 290, + "y": 380, + "wires": [ + [ + "b67a7147.65fcd8" + ] + ] + }, + { + "id": "d1153ad6.40d738", + "type": "ui_template", + "z": "eaae323a.31b3", + "group": "f3ca28ef.4df0a8", + "name": "Shutdown information", + "order": 1, + "width": 0, + "height": 0, + "format": "
To prevent data corruption, please always shutdown the machine before unplugging the unit.\n

\nRemember to first unlock the shutdown button.\n
", + "storeOutMessages": true, + "fwdInMessages": false, + "resendOnRefresh": true, + "templateScope": "local", + "x": 120, + "y": 320, + "wires": [ + [] + ] + }, + { + "id": "e08cfcb8.2a67e8", + "type": "link out", + "z": "eaae323a.31b3", + "name": "Home shutdown button", + "links": [ + "b81b990a.d4dca" + ], + "x": 715, + "y": 500, + "wires": [] + }, + { + "id": "ce7087fc.dcc9e8", + "type": "ui_toast", + "z": "eaae323a.31b3", + "position": "dialog", + "displayTime": "10", + "highlight": "", + "sendall": true, + "outputs": 1, + "ok": "OK", + "cancel": "", + "raw": false, + "topic": "Turning off now!", + "name": "Shutdown message", + "x": 580, + "y": 540, + "wires": [ + [] + ] + }, + { + "id": "7d1626a0.deb85", + "type": "change", + "z": "eaae323a.31b3", + "name": "shutdown!", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "shutdown", + "tot": "str" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 310, + "y": 500, + "wires": [ + [ + "e08cfcb8.2a67e8" + ] + ] + }, + { + "id": "8f1b8e23.daafe", + "type": "switch", + "z": "eaae323a.31b3", + "name": "", + "property": "payload", + "propertyType": "msg", + "rules": [ + { + "t": "eq", + "v": "NO!", + "vt": "str" + }, + { + "t": "else" + } + ], + "checkall": "true", + "repair": false, + "outputs": 2, + "x": 150, + "y": 500, + "wires": [ + [ + "d58039a9.6e7928" + ], + [ + "7d1626a0.deb85", + "281a56c9.ec7902" + ] + ] + }, + { + "id": "281a56c9.ec7902", + "type": "change", + "z": "eaae323a.31b3", + "name": "Shutdown message", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "Please wait a minute before disconnecting the machine from its power supply!", + "tot": "str" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 340, + "y": 540, + "wires": [ + [ + "ce7087fc.dcc9e8" + ] + ] + }, + { + "id": "57db4f6279b5afe0", + "type": "comment", + "z": "eaae323a.31b3", + "name": "LICENSE", + "info": "Copyright 2022 Thibaut Pollina and Romain Bazile\nLicensed under GPL v3.0", + "x": 140, + "y": 600, + "wires": [] + }, + { + "id": "4557d689.a4fa88", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "sample_ship", + "label": "Name of the ship", + "tooltip": "", + "group": "3e1ba03d.f01d8", + "order": 2, + "width": 0, + "height": 0, + "passthru": true, + "mode": "text", + "delay": "300", + "topic": "sample_ship", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 670, + "y": 80, + "wires": [ + [ + "9f501f49.45645" + ] + ] + }, + { + "id": "fcfc31ae.af3af", + "type": "ui_dropdown", + "z": "b771c342.49603", + "name": "sample_sampling_gear", + "label": "Sampling gear*", + "tooltip": "", + "place": "Choose from list", + "group": "3e1ba03d.f01d8", + "order": 6, + "width": 0, + "height": 0, + "passthru": true, + "multiple": false, + "options": [ + { + "label": "High Speed Net", + "value": "net_hsn", + "type": "str" + }, + { + "label": "Tara Decknet", + "value": "net_decknet", + "type": "str" + }, + { + "label": "Plankton net", + "value": "net", + "type": "str" + }, + { + "label": "Niskin bottle 12L", + "value": "niskin_12L", + "type": "str" + }, + { + "label": "Niskin bottle 24L", + "value": "niskin_24L", + "type": "str" + }, + { + "label": "Pass Hull", + "value": "pass_hull", + "type": "str" + }, + { + "label": "Single location (with net or bucket)", + "value": "single_location", + "type": "str" + }, + { + "label": "Lab culture", + "value": "culture", + "type": "str" + }, + { + "label": "Test", + "value": "test", + "type": "str" + } + ], + "payload": "", + "topic": "sample_sampling_gear", + "topicType": "str", + "className": "", + "x": 630, + "y": 200, + "wires": [ + [ + "9f501f49.45645", + "46eb1bf8.3dc5f4", + "3ac7b631f5d8ef90" + ] + ] + }, + { + "id": "82c5fc77.59c97", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "sample_operator", + "label": "Name of the operator*", + "tooltip": "", + "group": "3e1ba03d.f01d8", + "order": 3, + "width": 0, + "height": 0, + "passthru": true, + "mode": "text", + "delay": "300", + "topic": "sample_operator", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 650, + "y": 160, + "wires": [ + [ + "9f501f49.45645" + ] + ] + }, + { + "id": "9c882b37.fde668", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "sample_project", + "label": "Name of the project*", + "tooltip": "", + "group": "3e1ba03d.f01d8", + "order": 1, + "width": 0, + "height": 0, + "passthru": true, + "mode": "text", + "delay": "300", + "topic": "sample_project", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 660, + "y": 40, + "wires": [ + [ + "9f501f49.45645" + ] + ] + }, + { + "id": "94eb4221.9b92c", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "sample_id", + "label": "Station ID*", + "tooltip": "", + "group": "3e1ba03d.f01d8", + "order": 4, + "width": 0, + "height": 0, + "passthru": true, + "mode": "text", + "delay": "300", + "topic": "sample_id", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 670, + "y": 120, + "wires": [ + [ + "9f501f49.45645" + ] + ] + }, + { + "id": "9f501f49.45645", + "type": "function", + "z": "b771c342.49603", + "name": "set global", + "func": "global.set(msg.topic,msg.payload);", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 1080, + "y": 200, + "wires": [ + [] + ] + }, + { + "id": "222c851d.5d0a3a", + "type": "ui_ui_control", + "z": "b771c342.49603", + "name": "", + "events": "change", + "x": 400, + "y": 880, + "wires": [ + [] + ] + }, + { + "id": "52f6b103.1efb6", + "type": "ui_toast", + "z": "b771c342.49603", + "position": "dialog", + "displayTime": "3", + "highlight": "", + "sendall": true, + "outputs": 1, + "ok": "OK", + "cancel": "", + "raw": false, + "topic": "", + "name": "", + "x": 710, + "y": 980, + "wires": [ + [] + ] + }, + { + "id": "986d960a.c75908", + "type": "function", + "z": "b771c342.49603", + "name": "Check form", + "func": "var sample_project= global.get(\"sample_project\");\nvar sample_id= global.get(\"sample_id\");\nvar sample_operator= global.get(\"sample_operator\");\nvar sample_sampling_gear= global.get(\"sample_sampling_gear\");\nvar object_lat= global.get(\"object_lat\");\nvar object_lon= global.get(\"object_lon\");\nvar object_date= global.get(\"object_date\");\nvar object_time= global.get(\"object_time\");\nif (sample_project === undefined || sample_project === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Sample project\"\n return [null, msg];\n}\n\nelse if (sample_id === undefined || sample_id === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Sample ID\"\n return [null, msg];\n}\n\nelse if (sample_operator === undefined || sample_operator === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Sample operator\"\n return [null, msg];\n}\n\nelse if (sample_sampling_gear === undefined || sample_sampling_gear === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Sample sampling gear\"\n return [null, msg];\n}\n\nelse if (object_lat === undefined || object_lat === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Latitude of sample\"\n return [null, msg];\n}\n\nelse if (object_lon === undefined || object_lon === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Longitude of sample\"\n return [null, msg];\n}\n\nelse if (object_date === undefined || object_date === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Date of sample\"\n return [null, msg];\n}\n\nelse if (object_time === undefined || object_time === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Time of sample\"\n return [null, msg];\n}\nelse if (sample_sampling_gear.startsWith(\"net\")){\n var object_lat_end = global.get(\"object_lat_end\");\n var object_lon_end = global.get(\"object_lon_end\");\n var object_date_end = global.get(\"object_date_end\");\n var object_time_end = global.get(\"object_time_end\");\n var sample_gear_net_opening = global.get(\"sample_gear_net_opening\");\n\n if (object_lat_end === undefined || object_lat_end === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Latitude of retrieval\"\n return [null, msg];\n }\n \n else if (object_lon_end === undefined || object_lon_end === null) {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Longitude of retrieval\"\n return [null, msg];\n }\n \n else if (object_date_end === undefined || object_date_end === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Date of retrieval\"\n return [null, msg];\n }\n \n else if (object_time_end === undefined || object_time_end === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Time of retrieval\"\n return [null, msg];\n }\n \n else if (sample_gear_net_opening === undefined || sample_gear_net_opening === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Net opening dimension\"\n return [null, msg];\n }\n \n if (sample_sampling_gear == \"net_decknet\"){\n var sample_total_volume = global.get(\"sample_total_volume\");\n if (sample_total_volume === undefined || sample_total_volume === \"\") {\n msg.topic = \"Missing entry :\"\n msg.payload = \"Decknet flowmeter readings\"\n return [null, msg];\n }\n }\n}\nmsg.topic = \"config_save\"\nmsg.payload={\"tab\":\"Optic Configuration\"};\n\nreturn [msg, null];", + "outputs": 2, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 470, + "y": 940, + "wires": [ + [ + "726a7822.cd6298", + "e2b277c1.07283" + ], + [ + "52f6b103.1efb6" + ] + ], + "outputLabels": [ + "message", + "error" + ] + }, + { + "id": "18f44504.cac66b", + "type": "gpsd", + "z": "b771c342.49603", + "name": "", + "hostname": "localhost", + "port": "2947", + "tpv": true, + "sky": false, + "info": false, + "device": false, + "gst": false, + "att": false, + "x": 250, + "y": 1240, + "wires": [ + [ + "258b4562.9f778a", + "54e37580.fdc31c", + "cc21ca16.b92928", + "4a4de52c.cf2884", + "73c4a14a.9b93c8" + ] + ] + }, + { + "id": "726a7822.cd6298", + "type": "ui_ui_control", + "z": "b771c342.49603", + "name": "", + "events": "change", + "x": 700, + "y": 900, + "wires": [ + [] + ] + }, + { + "id": "16de754c.cc969b", + "type": "ui_button", + "z": "b771c342.49603", + "name": "", + "group": "5517c651.b2f668", + "order": 1, + "width": 5, + "height": 1, + "passthru": false, + "label": "Previous", + "tooltip": "", + "color": "#097479", + "bgcolor": "white", + "icon": "keyboard_return", + "payload": "{\"tab\":\"Home\"}", + "payloadType": "json", + "topic": "", + "x": 240, + "y": 880, + "wires": [ + [ + "222c851d.5d0a3a" + ] + ] + }, + { + "id": "84f3d040.5f7ea", + "type": "ui_button", + "z": "b771c342.49603", + "name": "", + "group": "5517c651.b2f668", + "order": 2, + "width": 5, + "height": 1, + "passthru": false, + "label": "Continue", + "tooltip": "", + "color": "#097479", + "bgcolor": "white", + "icon": "keyboard_tab", + "payload": "{\"tab\":\"Home\"}", + "payloadType": "json", + "topic": "", + "x": 240, + "y": 940, + "wires": [ + [ + "986d960a.c75908" + ] + ] + }, + { + "id": "d027a6bf.7049e8", + "type": "function", + "z": "b771c342.49603", + "name": "get sample_projet", + "func": "msg.payload = msg.payload.sample_project;\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 310, + "y": 40, + "wires": [ + [ + "9c882b37.fde668" + ] + ] + }, + { + "id": "5a811caf.0f3144", + "type": "function", + "z": "b771c342.49603", + "name": "get sample_ship", + "func": "msg.payload = msg.payload.sample_ship;\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 300, + "y": 80, + "wires": [ + [ + "4557d689.a4fa88" + ] + ] + }, + { + "id": "45911c98.2bd83c", + "type": "function", + "z": "b771c342.49603", + "name": "get sample_id", + "func": "msg.payload = msg.payload.sample_id;\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 300, + "y": 120, + "wires": [ + [ + "94eb4221.9b92c" + ] + ] + }, + { + "id": "1e09a4ab.72996b", + "type": "function", + "z": "b771c342.49603", + "name": "get sample_operator", + "func": "msg.payload = msg.payload.sample_operator;\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 320, + "y": 160, + "wires": [ + [ + "82c5fc77.59c97" + ] + ] + }, + { + "id": "a3272681.f271c8", + "type": "function", + "z": "b771c342.49603", + "name": "get sample_sampling_gear", + "func": "msg.topic = \"sample_sampling_gear\"\nif (msg.payload.sample_sampling_gear === undefined){\n msg.payload = \"net\";\n}\nelse\n{\n msg.payload = msg.payload.sample_sampling_gear;\n}\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 340, + "y": 200, + "wires": [ + [ + "fcfc31ae.af3af" + ] + ] + }, + { + "id": "a6907a38.f6611", + "type": "subflow:1c24ad9c.bebec2", + "z": "b771c342.49603", + "name": "", + "env": [], + "x": 70, + "y": 220, + "wires": [ + [ + "d027a6bf.7049e8", + "5a811caf.0f3144", + "45911c98.2bd83c", + "1e09a4ab.72996b", + "8dff1648.82e42", + "9f04c5ec.75f3d8", + "f408a273.4fb538", + "e73fd87d.d24e4", + "489c8e06.cc7d6", + "a3272681.f271c8" + ] + ] + }, + { + "id": "e2b277c1.07283", + "type": "subflow:1c24ad9c.bebec2", + "z": "b771c342.49603", + "name": "", + "env": [], + "x": 690, + "y": 940, + "wires": [ + [] + ] + }, + { + "id": "7116e906.9f50f", + "type": "ui_text", + "z": "b771c342.49603", + "group": "fc5e4e6f.5b1c8", + "order": 1, + "width": 10, + "height": 1, + "name": "GPS Status Display", + "label": "GPS Status:", + "format": "{{msg.payload}}", + "layout": "row-center", + "x": 740, + "y": 1080, + "wires": [] + }, + { + "id": "9c7f7fc9.c8d3a", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "object_depth_max", + "label": "Max sampling depth (m)", + "tooltip": "in m", + "group": "3e1ba03d.f01d8", + "order": 10, + "width": 5, + "height": 1, + "passthru": true, + "mode": "number", + "delay": "300", + "topic": "object_depth_max", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 650, + "y": 240, + "wires": [ + [ + "9f501f49.45645" + ] + ] + }, + { + "id": "317eeeb7.8d3042", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "object_depth_min", + "label": "Min sampling depth (m)", + "tooltip": "in m", + "group": "3e1ba03d.f01d8", + "order": 9, + "width": 5, + "height": 1, + "passthru": true, + "mode": "number", + "delay": "300", + "topic": "object_depth_min", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 650, + "y": 280, + "wires": [ + [ + "9f501f49.45645" + ] + ] + }, + { + "id": "cbb123ab.fd3428", + "type": "ui_ui_control", + "z": "b771c342.49603", + "name": "show/hide net groups", + "events": "change", + "x": 1320, + "y": 300, + "wires": [ + [] + ] + }, + { + "id": "642ff403.1ed91c", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "sample_concentrated_sample_volume", + "label": "Concentrated sample volume (mL)", + "tooltip": "Volume extracted from the net codend (in mL)", + "group": "3e1ba03d.f01d8", + "order": 12, + "width": 10, + "height": 1, + "passthru": true, + "mode": "number", + "delay": "300", + "topic": "sample_concentrated_sample_volume", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 590, + "y": 440, + "wires": [ + [ + "9f501f49.45645" + ] + ] + }, + { + "id": "e967b844.46aa48", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "sample_gear_net_opening", + "label": "Net opening dimension (mm)", + "tooltip": "Size of the net mouth opening (in mm)", + "group": "cf5d9f0e.d57e7", + "order": 1, + "width": 10, + "height": 1, + "passthru": true, + "mode": "number", + "delay": "300", + "topic": "sample_gear_net_opening", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 620, + "y": 320, + "wires": [ + [ + "9f501f49.45645" + ] + ] + }, + { + "id": "c0ce5626.b6c5", + "type": "ui_toast", + "z": "b771c342.49603", + "position": "dialog", + "displayTime": "3", + "highlight": "", + "sendall": true, + "outputs": 1, + "ok": "OK", + "cancel": "", + "raw": false, + "topic": "", + "name": "", + "x": 1230, + "y": 620, + "wires": [ + [] + ] + }, + { + "id": "c33f1124.af6688", + "type": "ui_form", + "z": "b771c342.49603", + "name": "sample_location", + "label": "Sample Location", + "group": "cef1e703.bcf3c8", + "order": 1, + "width": 0, + "height": 0, + "options": [ + { + "label": "Latitude (36.574439°N or 36°57.4439'N)", + "value": "object_lat", + "type": "text", + "required": true, + "rows": null + }, + { + "label": "Longitude (110.42100°W or 110°4.2100'W)", + "value": "object_lon", + "type": "text", + "required": true, + "rows": null + }, + { + "label": "Date (YYYY-MM-DD, UTC)", + "value": "object_date", + "type": "text", + "required": true, + "rows": null + }, + { + "label": "Time (HH:MM(:SS), UTC 24h)", + "value": "object_time", + "type": "text", + "required": true, + "rows": null + } + ], + "formValue": { + "object_lat": "", + "object_lon": "", + "object_date": "", + "object_time": "" + }, + "payload": "", + "submit": "Validate", + "cancel": "Reset", + "topic": "sample_location", + "x": 660, + "y": 580, + "wires": [ + [ + "14658615.47c862", + "a9fb1f4b83fc25a7" + ] + ] + }, + { + "id": "358908cd.416ab", + "type": "ui_form", + "z": "b771c342.49603", + "name": "net_throw_location", + "label": "Net Throw Location", + "group": "cf5d9f0e.d57e7", + "order": 3, + "width": 0, + "height": 0, + "options": [ + { + "label": "Latitude (36.574439°N or 36°57.4439'N)", + "value": "object_lat", + "type": "text", + "required": true, + "rows": null + }, + { + "label": "Longitude (110.42100°W or 110°4.2100'W)", + "value": "object_lon", + "type": "text", + "required": true, + "rows": null + }, + { + "label": "Date (YYYY-MM-DD UTC)", + "value": "object_date", + "type": "text", + "required": true, + "rows": null + }, + { + "label": "Time (HH:MM, UTC 24h)", + "value": "object_time", + "type": "text", + "required": true, + "rows": null + } + ], + "formValue": { + "object_lat": "", + "object_lon": "", + "object_date": "", + "object_time": "" + }, + "payload": "", + "submit": "Validate", + "cancel": "", + "topic": "net_throw_location", + "topicType": "str", + "splitLayout": false, + "className": "", + "x": 650, + "y": 620, + "wires": [ + [ + "14658615.47c862", + "ad54b89540460d27" + ] + ] + }, + { + "id": "56d40584.eff4e4", + "type": "ui_form", + "z": "b771c342.49603", + "name": "net_retrieval_location", + "label": "Net Retrieval Location", + "group": "cf5d9f0e.d57e7", + "order": 4, + "width": 0, + "height": 0, + "options": [ + { + "label": "Latitude (36.574439°N or 36°57.4439'N)", + "value": "object_lat_end", + "type": "text", + "required": true, + "rows": null + }, + { + "label": "Longitude (110.42100°W or 110°4.2100'W)", + "value": "object_lon_end", + "type": "text", + "required": true, + "rows": null + }, + { + "label": "Date (YYYY-MM-DD UTC)", + "value": "object_date_end", + "type": "text", + "required": true, + "rows": null + }, + { + "label": "Time (HH:MM, UTC 24h)", + "value": "object_time_end", + "type": "text", + "required": true, + "rows": null + } + ], + "formValue": { + "object_lat_end": "", + "object_lon_end": "", + "object_date_end": "", + "object_time_end": "" + }, + "payload": "", + "submit": "Validate", + "cancel": "", + "topic": "net_retrieval_location", + "topicType": "str", + "splitLayout": false, + "x": 640, + "y": 660, + "wires": [ + [ + "14658615.47c862", + "c21bf0244e67e40a" + ] + ] + }, + { + "id": "14658615.47c862", + "type": "function", + "z": "b771c342.49603", + "name": "Validate Location / Timestamp", + "func": "// Code added here will be run once\n// whenever the node is started.\nfunction ConvertDDMMToDD(input) {\n // Input Format 36°57.4439'N, 110°4.2100'W\n // From https://stackoverflow.com/questions/1140189/converting-latitude-and-longitude-to-decimal-values\n if (!input.match(/\\d+°\\d+\\.*\\d*\\'[NSEW]/)){\n \treturn \"parsing error\"\n }\n var parts = input.split(/[^\\d.\\w]+/)\n if (parts.length != 3){\n \treturn \"parsing error\"\n }\n var dd = Number(parts[0]) + Number(parts[1])/60\n return dd.toFixed(6) + parts[2]\n}\n\nfunction ValidateCoordinates(input, lat){\n // Input Format 36.574439°N, 110.42100°W\n // Or 36°57.4439'N, 110°4.2100'W\n if (input.match(\"'\")){\n input = ConvertDDMMToDD(input)\n }\n \n var error = {}\n\n if (input.startsWith(\"parsing error\")){\n error.topic = \"Error with the \"\n error.payload = \"You need to respect the format example, 36.574439°N or 36°57.4439'N\"\n return [null, error]\n }\n \n var direction = input.match(/[NSEW]/)\n var position = input.match(/[\\+\\-\\d\\.]+/)\n \n if (direction === null){\n error.topic = \"Error with the \"\n error.payload = \"You need to explicitely enter N/S/E/W\"\n return [null, error]\n }\n \n // Test that position is only made of digits!\n if(/^[\\+\\-]/.test(position)){\n error.topic = \"Error with the \"\n error.payload = \"Use of +/- sign is inconsistent with N/S/E/W letter! Please only use N/S/E/W!\"\n return [null, error]\n }\n \n var dd = Number(position)\n if (lat){\n // Check latitude\n if (direction == \"S\" || direction == \"N\") {\n if (dd>90.0){\n error.topic = \"Error with the \"\n error.payload = \"Latitude is more than 90°\"\n return [null, error]\n }\n }\n if (direction == \"W\" || direction == \"E\") {\n error.topic = \"Error with the \"\n error.payload = \"This is not a Latitude!\"\n return [null, error]\n }\n }\n else{\n // Check longitude\n if (direction == \"W\" || direction == \"E\") {\n if (dd>180.0){\n error.topic = \"Error with the \"\n error.payload = \"Longitude is more than 180°\"\n return [null, error]\n }\n }\n if (direction == \"N\" || direction == \"S\") {\n error.topic = \"Error with the \"\n error.payload = \"This is not a Longitude!\"\n return [null, error]\n }\n }\n \n if (direction == \"S\" || direction == \"W\") {\n dd = dd * -1\n } // Don't do anything for N or E\n return [dd.toFixed(4), null]\n \n}\n\nfunction ValidateDate(input){\n // Input Format 2020-12-25\n var error = {};\n \n if (! /20\\d{2}-[0-1]\\d-[0-3]\\d/.test(input)){\n error.topic = \"Error with the date\";\n error.payload = \"The date should respect the ISO format YYYY-MM-DD\";\n return [null, error];\n }\n else {\n var date = input.match(/\\d+/g);\n if (!((2000 < date[0]) && (date[0] < 2100))){\n error.topic = \"Error with the date\"\n error.payload = \"The year should be between 2000 and 2100\"\n return [null, error]\n }\n else if (!((0 < date[1]) && (date[1] <= 12))){\n error.topic = \"Error with the date\"\n error.payload = \"The month should be between 01 and 12\"\n return [null, error]\n }\n else if (!((0 < date[2]) && (date[2] <= 31))){\n error.topic = \"Error with the date\"\n error.payload = \"The day should be between 01 and 31\"\n return [null, error]\n }\n }\n return [input.replace(/-/g, ''), null]\n}\n\nfunction ValidateTime(input){\n // Input Format 12:00\n var error = {}\n \n if (! /[0-2]?\\d:[0-5]\\d/.test(input)){\n error.topic = \"Error with the time\"\n error.payload = \"The date should respect the ISO format HH:MM\"\n return [null, error]\n }\n else {\n var time = input.match(/\\d+/g)\n \n if (!((0 <= time[0]) && (time[0] < 24))){\n error.topic = \"Error with the time\"\n error.payload = \"The hours should be 0 and 23.\"\n return [null, error]\n }\n else if (!((0 <= time[1]) && (time[1] < 60))){\n error.topic = \"Error with the time\"\n error.payload = \"The minutes should be between 0 and 59\"\n return [null, error]\n }\n }\n return [input.replace(/:/g, ''), null]\n}\n\n\nvar ret\nvar payload_for_form = {payload:{}}\nmsg.valid = false\n\nif (msg.topic == \"culture_timestamp\"){\n ret = ValidateDate(msg.payload.object_date)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_date\", ret[0])\n \n ret = ValidateTime(msg.payload.object_time)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_time\", ret[0])\n return [{topic: \"Date and time format valid!\", payload: \"All good!\", valid: true}, payload_for_form]\n}\nelse if (msg.topic == \"net_retrieval_location\"){\n ret = ValidateCoordinates(msg.payload.object_lat_end, true);\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" Latitude\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_lat_end\", ret[0])\n ret = ValidateCoordinates(msg.payload.object_lon_end, false)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" Longitude\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_lon_end\", ret[0]);\n \n ret = ValidateDate(msg.payload.object_date_end)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample retrieval\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_date_end\", ret[0])\n \n ret = ValidateTime(msg.payload.object_time_end)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample retrieval\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_time_end\", ret[0])\n}\nelse{\n ret = ValidateCoordinates(msg.payload.object_lat, true);\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" Latitude\";\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_lat\", ret[0]);\n payload_for_form.payload[\"object_lat_end\"] = msg.payload.object_lat;\n \n ret = ValidateCoordinates(msg.payload.object_lon, false);\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" Longitude\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_lon\", ret[0])\n payload_for_form.payload[\"object_lon_end\"] = msg.payload.object_lon;\n\n ret = ValidateDate(msg.payload.object_date)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_date\", ret[0])\n payload_for_form.payload[\"object_date_end\"] = msg.payload.object_date;\n \n ret = ValidateTime(msg.payload.object_time)\n if (ret[1] !== null){\n msg.topic = ret[1].topic + \" of the sample\"\n msg.payload = ret[1].payload\n return [msg, null]\n }\n global.set(\"object_time\", ret[0])\n payload_for_form.payload[\"object_time_end\"] = msg.payload.object_time;\n}\nreturn [{topic: \"Coordinates valid!\", payload: \"All good!\", valid: true}, payload_for_form]\n", + "outputs": 2, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 930, + "y": 620, + "wires": [ + [ + "c0ce5626.b6c5", + "9a18a4b4.178448" + ], + [ + "56d40584.eff4e4" + ] + ], + "inputLabels": [ + "Location form data" + ], + "outputLabels": [ + "Message", + "Location validated" + ] + }, + { + "id": "46eb1bf8.3dc5f4", + "type": "function", + "z": "b771c342.49603", + "name": "Net check", + "func": "var decknet = {}\nvar activation_msg = {}\n\nif (msg.payload.startsWith(\"net_decknet\")){\n decknet.enabled = true;\n}\nelse {\n decknet.enabled = false;\n}\n\nif (msg.payload.startsWith(\"net\")){\n activation_msg.payload = {\"group\":{\"show\":[\"Sample_Net_Metadata\"],\"hide\":[\"Sample_Sample_Location\",\"Sample_Culture_Date_and_Time\"]}};\n}\nelse if (msg.payload != \"culture\" && msg.payload != \"test\"){\n activation_msg.payload = {\"group\":{\"show\":[\"Sample_Sample_Location\"], \"hide\":[\"Sample_Net_Metadata\",\"Sample_Culture_Date_and_Time\"]}};\n}\n\n\nreturn [decknet, activation_msg];", + "outputs": 2, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 1080, + "y": 240, + "wires": [ + [ + "516375fd.2ed61c", + "470e382a.25691", + "fbe32ac8.ff6a38" + ], + [ + "cbb123ab.fd3428" + ] + ], + "outputLabels": [ + "decknet activation", + "group display control" + ] + }, + { + "id": "516375fd.2ed61c", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "sample_total_flowmeter_start", + "label": "Decknet flowmeter start", + "tooltip": "in L", + "group": "cf5d9f0e.d57e7", + "order": 6, + "width": 5, + "height": 1, + "passthru": false, + "mode": "text", + "delay": "300", + "topic": "sample_total_flowmeter_start", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 1340, + "y": 220, + "wires": [ + [ + "e9bc112c.eb75f8" + ] + ] + }, + { + "id": "470e382a.25691", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "sample_total_flowmeter_end", + "label": "Decknet flowmeter end", + "tooltip": "in L", + "group": "cf5d9f0e.d57e7", + "order": 7, + "width": 5, + "height": 1, + "passthru": false, + "mode": "text", + "delay": "300", + "topic": "sample_total_flowmeter_end", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 1340, + "y": 260, + "wires": [ + [ + "e9bc112c.eb75f8" + ] + ] + }, + { + "id": "fbe32ac8.ff6a38", + "type": "ui_template", + "z": "b771c342.49603", + "group": "cf5d9f0e.d57e7", + "name": "Decknet flowmeter read", + "order": 5, + "width": 10, + "height": 1, + "format": "
\n

Decknet flowmeter readings

\n

Those values are used to calculate sample_total_volume. Values are in L.

\n
\n", + "storeOutMessages": true, + "fwdInMessages": true, + "resendOnRefresh": true, + "templateScope": "local", + "x": 1330, + "y": 180, + "wires": [ + [] + ] + }, + { + "id": "f408a273.4fb538", + "type": "function", + "z": "b771c342.49603", + "name": "get sample_gear_net_opening", + "func": "if (msg.payload.sample_gear_net_opening === null){\n msg.payload = 0;\n global.set(\"sample_gear_net_opening\",msg.payload);\n}\nelse\n{\n msg.payload = msg.payload.sample_gear_net_opening;\n}\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 350, + "y": 320, + "wires": [ + [ + "e967b844.46aa48" + ] + ] + }, + { + "id": "8dff1648.82e42", + "type": "function", + "z": "b771c342.49603", + "name": "get object_depth_max", + "func": "if (msg.payload.object_depth_max === null){\n msg.payload = 0;\n global.set(\"object_depth_max\",msg.payload);\n}\nelse\n{\n msg.payload = msg.payload.object_depth_max;\n}\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 320, + "y": 240, + "wires": [ + [ + "9c7f7fc9.c8d3a" + ] + ] + }, + { + "id": "9f04c5ec.75f3d8", + "type": "function", + "z": "b771c342.49603", + "name": "get object_depth_min", + "func": "if (msg.payload.object_depth_min === null){\n msg.payload = 0;\n global.set(\"object_depth_min\",msg.payload);\n}\nelse\n{\n msg.payload = msg.payload.object_depth_min;\n}\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 320, + "y": 280, + "wires": [ + [ + "317eeeb7.8d3042" + ] + ] + }, + { + "id": "9a18a4b4.178448", + "type": "function", + "z": "b771c342.49603", + "name": "calculate sample_total_volume", + "func": "\n/*object_lat = 33.95 \nobject_lon = 118.4 \nobject_lat_end = 40.6333 \nobject_lon_end = 73.78333\nsample_gear_net_opening = 40*/\n\n// Copyright 1997 Ed Williams. All rights reserved\n// Adapted by Romain Bazile - Ocean Trotter - 01-2021\n\ndecpl=4 // Dec places of minutes output\n\nellipse = {\"name\":\"WSG84\", \"a\":6378.137/1.852, \"invf\":298.257223563}\n\nfunction ComputeDistance(lat1, lon1, lat2, lon2){\n var d,crs12,crs21\n var argacos\n var a,invf\n \n // lat and lon in radian\n lat1=(Math.PI/180)*lat1\n lat2=(Math.PI/180)*lat2\n lon1=(Math.PI/180)*lon1\n lon2=(Math.PI/180)*lon2\n \n //alert(\"lat1=\" + lat1 + \"lon1=\" + lon1 +\"\\nlat2=\" +lat2+ \"lon2=\"+lon2)\n \n /* get distance conversion factor */\n dc=1.852 //km\n //alert(\"dc=\" +dc)\n \n //showProps(ellipse,\"ellipse\")\n \n // elliptic code\n d=crsdist_ell(lat1,-lon1,lat2,-lon2,ellipse) // ellipse uses East negative\n d=d*dc // go to physical units\n \n //alert(\"d=\"+d+\" crs12=\"+crs12+\" crs21=\"+crs21)\n return d\n}\n\nfunction crsdist(lat1,lon1,lat2,lon2){ // radian args\n /* compute course and distance (spherical) */\n if ((lat1+lat2===0) && (Math.abs(lon1-lon2)==Math.PI) && \n (Math.abs(lat1) != (Math.PI/180)*90)){\t\n \talert(\"Course between antipodal points is undefined\")\n }\n \n d = Math.acos(Math.sin(lat1)*Math.sin(lat2)+Math.cos(lat1)*Math.cos(lat2)*Math.cos(lon1-lon2))\n return d\n}\n\nfunction crsdist_ell(glat1,glon1,glat2,glon2,ellipse){\n // glat1 initial geodetic latitude in radians N positive \n // glon1 initial geodetic longitude in radians E positive \n // glat2 final geodetic latitude in radians N positive \n // glon2 final geodetic longitude in radians E positive \n a=ellipse.a\n f=1/ellipse.invf\n //alert(\"a=\"+a+\" f=\"+f)\n var r, tu1, tu2, cu1, su1, cu2, s1, b1, f1\n var x, sx, cx, sy, cy,y, sa, c2a, cz, e, c, d\n var EPS= 0.00000000005\n var faz, baz, s\n var iter=1\n var MAXITER=100\n if ((glat1+glat2===0) && (Math.abs(glon1-glon2)==Math.PI)){\n alert(\"Course and distance between antipodal points is undefined\")\n glat1=glat1+0.00001 // allow algorithm to complete\n }\n if (glat1==glat2 && (glon1==glon2 || Math.abs(Math.abs(glon1-glon2)-2*Math.PI) < EPS)){\n alert(\"Points 1 and 2 are identical- course undefined\")\n out=new MakeArray(0)\n out.d=0\n out.crs12=0\n out.crs21=Math.PI\n return out\n }\n r = 1 - f\n tu1 = r * Math.tan (glat1)\n tu2 = r * Math.tan (glat2)\n cu1 = 1 / Math.sqrt (1 + tu1 * tu1)\n su1 = cu1 * tu1\n cu2 = 1 / Math.sqrt (1 + tu2 * tu2)\n s1 = cu1 * cu2\n b1 = s1 * tu2\n f1 = b1 * tu1\n x = glon2 - glon1\n d = x + 1 // force one pass\n while ((Math.abs(d - x) > EPS) && (iter < MAXITER))\n {\n iter=iter+1\n sx = Math.sin (x)\n // alert(\"sx=\"+sx)\n cx = Math.cos (x)\n tu1 = cu2 * sx\n tu2 = b1 - su1 * cu2 * cx\n sy = Math.sqrt(tu1 * tu1 + tu2 * tu2)\n cy = s1 * cx + f1\n y = atan2 (sy, cy)\n sa = s1 * sx / sy\n c2a = 1 - sa * sa\n cz = f1 + f1\n if (c2a > 0)\n cz = cy - cz / c2a\n e = cz * cz * 2 - 1\n c = ((-3 * c2a + 4) * f + 4) * c2a * f / 16\n d = x\n x = ((e * cy * c + cz) * sy * c + y) * sa\n x = (1 - c) * x * f + glon2 - glon1\n }\n x = Math.sqrt ((1 / (r * r) - 1) * c2a + 1)\n x +=1\n x = (x - 2) / x\n c = 1 - x\n c = (x * x / 4 + 1) / c\n d = (0.375 * x * x - 1) * x\n x = e * cy\n d = ((((sy*sy*4-3)*(1-e-e)*cz*d/6-x)*d/4+cz)*sy*d+y)*c*a*r\n if (Math.abs(iter-MAXITER)0) && (y>=0)){ out= Math.atan(y/x)}\n if ((x >0) && (y<0)) { out= Math.atan(y/x)+2*Math.PI}\n if ((x===0) && (y>0)) { out= Math.PI/2}\n if ((x===0) && (y<0)) { out= 3*Math.PI/2} \n if ((x===0) && (y===0)) {\n alert(\"atan2(0,0) undefined\")\n out= 0\n } \n return out\n}\n\nfunction showProps(obj,objName){\n var result=\"\"\n for (var i in obj){\n result +=objName + \".\" + i + \" = \" + obj[i] + \"\\n\"\n }\n alert(result)\n}\n\n\nif (msg.valid){\n msg.topic=\"sample_total_volume\"\n \n var object_lat_end = global.get(\"object_lat_end\")\n var object_lon_end = global.get(\"object_lon_end\")\n var sample_sampling_gear = global.get(\"sample_sampling_gear\")\n \n if (sample_sampling_gear.startsWith(\"net\") && sample_sampling_gear != \"net_decknet\") {\n if (!(isNaN(object_lat_end) && isNaN(object_lon_end))){\n var object_lat = global.get(\"object_lat\")\n var object_lon = global.get(\"object_lon\")\n var sample_gear_net_opening = global.get(\"sample_gear_net_opening\");\n\n distance_km = ComputeDistance(object_lat, object_lon, object_lat_end, object_lon_end)\n\n sample_total_volume = distance_km*(Math.PI*(sample_gear_net_opening/2)*(sample_gear_net_opening/2)) // liters\n sample_total_volume = Math.round(sample_total_volume + Number.EPSILON)\n msg.payload = sample_total_volume\n return msg\n }\n }\n}", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 930, + "y": 760, + "wires": [ + [ + "4f6afc5a.81e454" + ] + ] + }, + { + "id": "4fb4e0ad.c417c", + "type": "ui_text", + "z": "b771c342.49603", + "group": "fc5e4e6f.5b1c8", + "order": 6, + "width": 5, + "height": 1, + "name": "Latitude", + "label": "Latitude", + "format": "{{msg.payload.lat.deg}}°{{msg.payload.lat.min}}'{{msg.payload.lat.sec}}{{msg.payload.lat.dir}}", + "layout": "col-center", + "x": 700, + "y": 1120, + "wires": [] + }, + { + "id": "8d2b5026.13e6e8", + "type": "ui_text", + "z": "b771c342.49603", + "group": "fc5e4e6f.5b1c8", + "order": 7, + "width": 5, + "height": 1, + "name": "Longitude", + "label": "Longitude", + "format": "{{msg.payload.lon.deg}}°{{msg.payload.lon.min}}'{{msg.payload.lon.sec}}{{msg.payload.lon.dir}}", + "layout": "col-center", + "x": 700, + "y": 1160, + "wires": [] + }, + { + "id": "258b4562.9f778a", + "type": "function", + "z": "b771c342.49603", + "name": "Convert DD to DMS", + "func": "function ConvertDDToDMS(D, lng){\n // from https://stackoverflow.com/a/5786281/2108279\n return {\n dir : D<0?lng?'W':'S':lng?'E':'N',\n deg : 0|(D<0?D=-D:D),\n min : 0|D%1*60,\n sec :(0|D*60%1*6000)/100\n };\n}\n\nmsg.payload = {\n \"lat\":ConvertDDToDMS(msg.payload.lat, false),\n \"lon\":ConvertDDToDMS(msg.payload.lon, true)\n};\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 490, + "y": 1140, + "wires": [ + [ + "4fb4e0ad.c417c", + "8d2b5026.13e6e8" + ] + ] + }, + { + "id": "7c4ce5f3.62dd5c", + "type": "ui_text", + "z": "b771c342.49603", + "group": "fc5e4e6f.5b1c8", + "order": 4, + "width": 2, + "height": 1, + "name": "Speed", + "label": "Speed", + "format": "{{msg.payload}} kts", + "layout": "col-center", + "x": 690, + "y": 1200, + "wires": [] + }, + { + "id": "54e37580.fdc31c", + "type": "ui_text", + "z": "b771c342.49603", + "group": "fc5e4e6f.5b1c8", + "order": 5, + "width": 2, + "height": 1, + "name": "Direction", + "label": "Direction", + "format": "{{msg.payload.track}} °", + "layout": "col-center", + "x": 700, + "y": 1240, + "wires": [] + }, + { + "id": "cc21ca16.b92928", + "type": "function", + "z": "b771c342.49603", + "name": "GPS Mode", + "func": "switch (msg.payload.mode){\n case 1:msg.payload = \"No Fix\"; break\n case 2:msg.payload = \"2D Fix\"; break\n case 3:msg.payload = \"3D Fix\"; break\n default: msg.payload = \"No info\"\n}\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 470, + "y": 1080, + "wires": [ + [ + "7116e906.9f50f" + ] + ] + }, + { + "id": "4a4de52c.cf2884", + "type": "function", + "z": "b771c342.49603", + "name": "Speed conversion", + "func": "msg.payload = (0|msg.payload.speed) * 1.9438\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 490, + "y": 1200, + "wires": [ + [ + "7c4ce5f3.62dd5c" + ] + ] + }, + { + "id": "35ad311f.344c76", + "type": "ui_text", + "z": "b771c342.49603", + "group": "fc5e4e6f.5b1c8", + "order": 2, + "width": 5, + "height": 1, + "name": "Time", + "label": "Time", + "format": "{{msg.payload.time}}", + "layout": "col-center", + "x": 690, + "y": 1280, + "wires": [] + }, + { + "id": "e73fd87d.d24e4", + "type": "function", + "z": "b771c342.49603", + "name": "get acq_minimum_mesh", + "func": "msg.payload = msg.payload.acq_minimum_mesh;\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 330, + "y": 360, + "wires": [ + [ + "1aad56b31b5647ce" + ] + ] + }, + { + "id": "489c8e06.cc7d6", + "type": "function", + "z": "b771c342.49603", + "name": "get acq_maximum_mesh", + "func": "msg.payload = msg.payload.acq_maximum_mesh;\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 330, + "y": 400, + "wires": [ + [ + "10eb31a2d7a6590c" + ] + ] + }, + { + "id": "73c4a14a.9b93c8", + "type": "function", + "z": "b771c342.49603", + "name": "Convert time", + "func": "msg.payload.time = msg.payload.time.replace('T', ' ')\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 470, + "y": 1280, + "wires": [ + [ + "35ad311f.344c76" + ] + ] + }, + { + "id": "58de1340.3cc354", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "sample_dilution_factor", + "label": "Dilution Factor", + "tooltip": "0.5 if diluted by two; 2 if concentrated by a factor 2", + "group": "3e1ba03d.f01d8", + "order": 13, + "width": 10, + "height": 1, + "passthru": true, + "mode": "number", + "delay": "300", + "topic": "sample_dilution_factor", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 640, + "y": 480, + "wires": [ + [ + "9f501f49.45645" + ] + ] + }, + { + "id": "4f6afc5a.81e454", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": "sample_total_volume", + "label": "Filtered volume (in L)", + "tooltip": "Calculated or hand filled", + "group": "3e1ba03d.f01d8", + "order": 11, + "width": 0, + "height": 0, + "passthru": true, + "mode": "text", + "delay": "300", + "topic": "sample_total_volume", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 1220, + "y": 760, + "wires": [ + [ + "e1f2f6eb.fe1dd" + ] + ] + }, + { + "id": "e1f2f6eb.fe1dd", + "type": "function", + "z": "b771c342.49603", + "name": "set global", + "func": "global.set(msg.topic,msg.payload);", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 1420, + "y": 760, + "wires": [ + [] + ] + }, + { + "id": "e9bc112c.eb75f8", + "type": "function", + "z": "b771c342.49603", + "name": "Calculate volume", + "func": "if (msg.topic == \"sample_total_flowmeter_start\"){\n context.set(\"sample_total_flowmeter_start\", msg.payload);\n}\nif (msg.topic == \"sample_total_flowmeter_end\"){\n context.set(\"sample_total_flowmeter_end\", msg.payload);\n}\n\nif (context.keys().length == 2){\n sample_total_volume = context.get(\"sample_total_flowmeter_end\") - context.get(\"sample_total_flowmeter_start\");\n msg.topic=\"sample_total_volume\"\n msg.payload=sample_total_volume\n return msg\n}\n", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 1610, + "y": 240, + "wires": [ + [ + "4f6afc5a.81e454" + ] + ] + }, + { + "id": "cdd4181922eecf11", + "type": "ui_text_input", + "z": "b771c342.49603", + "name": 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\n Magnification : X\n \n \n
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\n Pixel resolution :\n \n μm\n
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\n Smallest cells to explore :\n \n μm\n
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\n Biggest cells to explore :\n \n μm\n
", + "storeOutMessages": true, + "fwdInMessages": true, + "templateScope": "local", + "x": 1320, + "y": 200, + "wires": [ + [] + ] + }, + { + "id": "f61aaed5.1e64", + "type": "ui_button", + "z": "bccd1f23.87219", + "name": "", + "group": "7a0b4877.a5d268", + "order": 1, + "width": 2, + "height": 1, + "passthru": false, + "label": "Previous", + "tooltip": "", + "color": "#097479", + "bgcolor": "white", + "icon": "keyboard_return", + "payload": "{\"tab\":\"Sample\"}", + "payloadType": "json", + "topic": "", + "x": 140, + "y": 1140, + "wires": [ + [ + "6c792043.b6ff9" + ] + ] + }, + { + "id": "9ba6ec0a.22c96", + "type": "ui_button", + "z": "bccd1f23.87219", + "name": "", + "group": "7a0b4877.a5d268", + "order": 2, + "width": 2, + "height": 1, + "passthru": false, + "label": "Continue", + "tooltip": "", + "color": "#097479", + "bgcolor": "white", + "icon": "keyboard_tab", + "payload": "{\"tab\":\"Home\"}", + "payloadType": "json", + "topic": "", + "x": 140, + "y": 1180, + "wires": [ + [ + 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\n \n \n \n \n \n \n \n \n \n
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Sample

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id:

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project:\n

\n

ship:

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operator:\n

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sampling gear:\n

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concentrated volume:\n

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gear net opening:\n

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total volume filtered:\n

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Acquisition

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id:

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instrument:\n

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instrument id:\n

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camera:

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celltype: \n

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maximum mesh:\n

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magnification:\n

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fnumber objective:\n

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software: \n

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Object

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latitude: \n

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longitude: \n

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latitude end:\n

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longitude end:\n

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date:

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time:

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date end:\n

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time end:\n

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depth min:\n

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depth max:\n

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Process

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pixel: \n

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id:

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in µs\",\n \"acq_software\": \"Software version number\",\n \t\t\"object_date\": \"Sample collection date (or beginning if using a net)\",\n \t\t\"object_time\": \"Sample collection time (or beginning if using a net)\",\n \t\t\"object_lat\": \"Sample collection latitude (or beginning if using a net)\",\n \t\t\"object_lon\": \"Sample collection longitude (or beginning if using a net)\",\n \t\t\"object_depth_min\": \"Sample collection minimal depth, in m\",\n \t\t\"object_depth_max\": \"Sample collection maximum depth, in m\",\n \t\t\"process_pixel\": \"Pixel imaging resolution, in µm/pixel\",\n \t\t\"process_datetime\": \"Segmentation timestamp\",\n \t\t\"process_id\": \"Segmentation ID\",\n \t\t\"process_uuid\": \"Segmentation UUID (Autogenerated)\",\n \t\t\"process_source\": \"Code source link of the executed code\",\n \t\t\"process_commit\": \"Version reference of the executed code\",\n \t\t\"sample_gear_net_opening\": \"Sample mouth opening dimension, in mm\",\n \t\t\"object_date_end\": \"Sample end collection date when using a net\",\n \t\t\"object_time_end\": \"Sample end collection time when using a net\",\n \t\t\"object_lat_end\": \"Sample end collection latitude when using a net\",\n \t\t\"object_lon_end\": \"Sample end collection longitude when using a net\",\n \t},\n\t\t\"sample_project\": global.get(\"sample_project\"),\n\t\t\"sample_id\": global.get(\"sample_project\") + \"_\" + global.get(\"sample_id\"),\n\t\t\"sample_ship\": global.get(\"sample_ship\"),\n\t\t\"sample_operator\": global.get(\"sample_operator\"),\n\t\t\"sample_sampling_gear\": global.get(\"sample_sampling_gear\"),\n\t\t\"sample_concentrated_sample_volume\": global.get(\"sample_concentrated_sample_volume\"),\n\t\t\"sample_total_volume\": global.get(\"sample_total_volume\"),\n\t\t\"sample_dilution_factor\": global.get(\"sample_dilution_factor\"),\n\t\t\"sample_speed_through_water\": global.get(\"sample_speed_through_water\"),\n\n\t\t\"acq_id\": global.get(\"sample_project\") + \"_\" + global.get(\"sample_id\")+ \"_\" + global.get(\"acq_id\"),\n\t\t\"acq_instrument\": global.get(\"acq_instrument\"),\n\t\t\"acq_instrument_id\": global.get(\"acq_instrument_id\"),\n\t\t\"acq_celltype\": global.get(\"acq_celltype\"),\n\t\t\"acq_minimum_mesh\": global.get(\"acq_minimum_mesh\"),\n\t\t\"acq_maximum_mesh\": global.get(\"acq_maximum_mesh\"),\n\t\t\"acq_min_esd\": global.get(\"acq_min_esd\"),\n\t\t\"acq_max_esd\": global.get(\"acq_max_esd\"),\n\t\t\"acq_volume\": global.get(\"acq_volume\"),\n\t\t\"acq_imaged_volume\": global.get(\"acq_imaged_volume\"),\n\t\t\"acq_magnification\": global.get(\"acq_magnification\"),\n\t\t\"acq_fnumber_objective\": global.get(\"acq_fnumber_objective\"),\n\t\t\"acq_camera\": global.get(\"acq_camera\"),\n\t\t\"acq_nb_frame\": global.get(\"nb_frame\"),\n\t\t\"acq_software\": global.get(\"acq_software\"),\n\n\t\t\"object_date\": global.get(\"object_date\"),\n\t\t\"object_time\": global.get(\"object_time\"),\n\t\t\"object_lat\": global.get(\"object_lat\"),\n\t\t\"object_lon\": global.get(\"object_lon\"),\n\t\t\"object_depth_min\": global.get(\"object_depth_min\"),\n\t\t\"object_depth_max\": global.get(\"object_depth_max\"),\n\n\t\t\"process_pixel\": global.get(\"process_pixel\"),\n\t\t\"process_source\": global.get(\"process_source\"),\n\t\t\"process_commit\": global.get(\"process_commit\")\n\t}\n};\n\nif (msg.payload.config.sample_sampling_gear.startsWith(\"net\")) {\n\tmsg.payload.config[\"sample_gear_net_opening\"] = global.get(\"sample_gear_net_opening\")\n\tmsg.payload.config[\"object_date_end\"] = global.get(\"object_date_end\")\n\tmsg.payload.config[\"object_time_end\"] = global.get(\"object_time_end\")\n\tmsg.payload.config[\"object_lat_end\"] = global.get(\"object_lat_end\")\n\tmsg.payload.config[\"object_lon_end\"] = global.get(\"object_lon_end\")\n}\n\nif ( msg.send == true){\n\treturn [msg, msg]\n}\nelse{\n\treturn [msg, null]\n}", + "outputs": 2, + "timeout": "", + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 870, + "y": 400, + "wires": [ + [ + "29be525e.0c87fe" + ], + [ + "c3e50240.82aa58" + ] + ] + }, + { + "id": "40c12463.a1f84c", + "type": "delay", + "z": "baa1e3d9.cb29d", + "name": "", + "pauseType": "delay", + "timeout": "1", + "timeoutUnits": "seconds", + "rate": "1", + "nbRateUnits": "1", + "rateUnits": "second", + "randomFirst": "1", + "randomLast": "5", + "randomUnits": "seconds", + "drop": false, + "outputs": 1, + "x": 900, + "y": 440, + "wires": [ + [ + "c3e50240.82aa58" + ] + ] + }, + { + "id": "4d1b02cb.83b51c", + "type": "ui_button", + "z": "baa1e3d9.cb29d", + "name": "", + "group": "4322c187.e73e5", + "order": 10, + "width": 5, + "height": 1, + "passthru": false, + "label": "Update config", + "tooltip": "", + "color": "", + "bgcolor": "", + "className": "", + "icon": "save", + "payload": "", + "payloadType": "str", + "topic": "imager/image", + "topicType": "str", + "x": 420, + "y": 400, + 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+ "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 680, + "y": 220, + "wires": [ + [ + "fb887036.12429", + "67091ac0.8f9f6c", + "99b11fe4.2795d" + ] + ] + }, + { + "id": "999065ca.27edb8", + "type": "switch", + "z": "baa1e3d9.cb29d", + "name": "topic filter", + "property": "topic", + "propertyType": "msg", + "rules": [ + { + "t": "eq", + "v": "status/pump", + "vt": "str" + }, + { + "t": "eq", + "v": "status/focus", + "vt": "str" + }, + { + "t": "eq", + "v": "status/light", + "vt": "str" + }, + { + "t": "eq", + "v": "status/imager", + "vt": "str" + } + ], + "checkall": "true", + "repair": false, + "outputs": 4, + "x": 320, + "y": 800, + "wires": [ + [ + "a46a1e7f.88a92", + "6742014e.1bb238" + ], + [ + "c516d9ea.f7f6e", + "6742014e.1bb238" + ], + [ + "6742014e.1bb238" + ], + [ + "307c851e.fb0f7a", + "2b9d6988.d84836" + ] + ] + }, + { + "id": "2b009bd7.c07004", + "type": "ui_text", + "z": "baa1e3d9.cb29d", + "group": "70de8209.68416c", + "order": 3, + "width": 10, + "height": 2, + "name": "imager", + "label": "Imager status:", + "format": "{{msg.payload.status}}", + "layout": "col-center", + "x": 770, + "y": 740, + "wires": [] + }, + { + "id": "c516d9ea.f7f6e", + "type": "ui_text", + "z": "baa1e3d9.cb29d", + "group": "70de8209.68416c", + "order": 1, + "width": 5, + "height": 1, + "name": "focus", + "label": "Focus status:", + "format": "{{msg.payload.status}}", + "layout": "col-center", + "x": 770, + "y": 700, + "wires": [] + }, + { + "id": "a46a1e7f.88a92", + "type": "ui_text", + "z": "baa1e3d9.cb29d", + "group": "70de8209.68416c", + "order": 2, + "width": 5, + "height": 1, + "name": "pump", + "label": "Pump status:", + "format": "{{msg.payload.status}}", + "layout": "col-center", + "x": 770, + "y": 660, + "wires": [] + }, + { + "id": "bb628f8d.98f108", + "type": "link in", + "z": "baa1e3d9.cb29d", + "name": "Status for fluidic module", + "links": [ + "58f2e0f.4e8b12" + ], + "x": 175, + "y": 800, + "wires": [ + [ + "999065ca.27edb8" + ] + ] + }, + { + "id": "307c851e.fb0f7a", + "type": "switch", + "z": "baa1e3d9.cb29d", + "name": "Imaging state", + "property": "payload", + "propertyType": "msg", + "rules": [ + { + "t": "jsonata_exp", + "v": "$contains(msg.payload.status, \"jpg\")\t", + "vt": "jsonata" + }, + { + "t": "else" + } + ], + "checkall": "false", + "repair": false, + "outputs": 2, + "x": 540, + "y": 880, + "wires": [ + [ + "db8e3dde.44efb8" + ], + [ + "6742014e.1bb238" + ] + ] + }, + { + "id": "db8e3dde.44efb8", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "img_counter", + "func": "img_counter=flow.get('img_counter')\nif (img_counter === undefined || img_counter === \"\"){\n img_counter = 0\n}\nimg_counter=img_counter+1\nflow.set('img_counter',img_counter)\nmsg.payload = img_counter\nmsg.payload = (100 * img_counter/global.get('nb_frame')).toFixed(2)\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 770, + "y": 860, + "wires": [ + [ + "1a2e721a.f5e876" + ] + ] + }, + { + "id": "59164d65.e7993c", + "type": "ui_toast", + "z": "baa1e3d9.cb29d", + "position": "top right", + "displayTime": "5", + "highlight": "", + "sendall": true, + "outputs": 0, + "ok": "OK", + "cancel": "", + "raw": false, + "topic": "", + "name": "", + "x": 1270, + "y": 900, + "wires": [] + }, + { + "id": "8c7348aa.1962e8", + "type": "template", + "z": "baa1e3d9.cb29d", + "name": "Create sentence", + "field": "payload", + "fieldType": "msg", + "format": "handlebars", + "syntax": "mustache", + "template": "The {{topic}} is {{payload.status}}", + "output": "str", + "x": 1050, + "y": 900, + "wires": [ + [ + "59164d65.e7993c" + ] + ] + }, + { + "id": "6742014e.1bb238", + "type": "change", + "z": "baa1e3d9.cb29d", + "name": "Remove high-level topic", + "rules": [ + { + "t": "change", + "p": "topic", + "pt": "msg", + "from": "status/", + "fromt": "str", + "to": "", + "tot": "str" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 810, + "y": 900, + "wires": [ + [ + "8c7348aa.1962e8" + ] + ] + }, + { + "id": "1a2e721a.f5e876", + "type": "ui_gauge", + "z": "baa1e3d9.cb29d", + "name": "progress donut", + "group": "b5d61bc7.54fe48", + "order": 3, + "width": 6, + "height": 3, + "gtype": "donut", + "title": "", + "label": "%", + "format": "{{value}}", + "min": 0, + "max": "100", + "colors": [ + "#ffa83f", + "#e6ff02", + "#00dfe9" + ], + "seg1": "50", + "seg2": "75", + "x": 1260, + "y": 860, + "wires": [] + }, + { + "id": "9bd72495.a8a098", + "type": "ui_text", + "z": "baa1e3d9.cb29d", + "group": "4322c187.e73e5", + "order": 5, + "width": 5, + "height": 1, + "name": "Total imaged volume", + "label": "Total imaged volume", + "format": "{{msg.payload}}", + "layout": "col-center", + "x": 1200, + "y": 100, + "wires": [] + }, + { + "id": "99b11fe4.2795d", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "imaged volume calc", + "func": "camera = global.get(\"acq_camera\");\ncell = global.get(\"acq_celltype\");\nnb_frame = global.get(\"nb_frame\");\nprocess_pixel = global.get(\"process_pixel\");\n\nvar volume = 0\nif (camera == \"HQ Camera\"){\n volume = nb_frame * (process_pixel*4056*process_pixel*3040*cell/1000000000) / 1000;\n}\nelse if (camera == \"Camera v2.1\"){\n volume = nb_frame * (process_pixel*3280*process_pixel*2464*cell/1000000000) / 1000;\n}\nelse{\n msg.payload = \"The camera is not known to this system\";\n return msg;\n}\n\nglobal.set(\"acq_imaged_volume\", volume.toFixed(4))\n\nmsg.payload = volume.toFixed(2) + \" mL\"\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 960, + "y": 100, + "wires": [ + [ + "9bd72495.a8a098" + ] + ], + "info": "### Focusing\n##### focus.py `nb_step` `orientation`\n\n- `nb_step` : **integer** (from 1 to 100000) - number of step to perform by the stage (about 31um/step)\n- `orientation` : **string** - orientation of the focus either `up` or `down`\n\nExample:\n\n python3.7 $HOME/PlanktoScope/scripts/focus.py 650 up\n" + }, + { + "id": "8e16aa2f.e40398", + "type": "ui_text", + "z": "baa1e3d9.cb29d", + "group": "4322c187.e73e5", + "order": 7, + "width": 5, + "height": 1, + "name": "Total pumped volume", + "label": "Total pumped volume", + "format": "{{msg.payload}} mL", + "layout": "col-center", + "x": 1200, + "y": 260, + "wires": [] + }, + { + "id": "67091ac0.8f9f6c", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "acq_volume calc", + "func": "var imaging_pump_volume = global.get(\"imaging_pump_volume\");\nvar nb_frame = global.get(\"nb_frame\");\nvar acq_volume = 0\n\nacq_volume = (Number(nb_frame)*Number(imaging_pump_volume)).toFixed(2)\nglobal.set(\"acq_volume\", acq_volume)\n\nmsg.payload = acq_volume\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 950, + "y": 260, + "wires": [ + [ + "8e16aa2f.e40398" + ] + ], + "info": "### Focusing\n##### focus.py `nb_step` `orientation`\n\n- `nb_step` : **integer** (from 1 to 100000) - number of step to perform by the stage (about 31um/step)\n- `orientation` : **string** - orientation of the focus either `up` or `down`\n\nExample:\n\n python3.7 $HOME/PlanktoScope/scripts/focus.py 650 up\n" + }, + { + "id": "2b9d6988.d84836", + "type": "switch", + "z": "baa1e3d9.cb29d", + "name": "", + "property": "payload", + "propertyType": "msg", + "rules": [ + { + "t": "hask", + "v": "status", + "vt": "str" + }, + { + "t": "hask", + "v": "camera_name", + "vt": "str" + } + ], + "checkall": "true", + "repair": false, + "outputs": 2, + "x": 650, + "y": 760, + "wires": [ + [ + "2b009bd7.c07004" + ], + [ + "3bbb756a.84190a" + ] + ] + }, + { + "id": "3bbb756a.84190a", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "set camera name", + "func": "global.set(\"acq_camera\", msg.payload.camera_name);\n\nmsg.payload = msg.payload.camera_name;\n\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 810, + "y": 780, + "wires": [ + [ + "559a8085.1d6b9" + ] + ] + }, + { + "id": "559a8085.1d6b9", + "type": "link out", + "z": "baa1e3d9.cb29d", + "name": "Camera Name", + "links": [ + "30067f35.532f2", + "572a6daa.6004c4", + "cfc783d7.d6ceb" + ], + "x": 965, + "y": 780, + "wires": [] + }, + { + "id": "49ea1123.ee1768", + "type": "ui_numeric", + "z": "baa1e3d9.cb29d", + "name": "sleep_before", + "label": "Delay to stabilize image (s)", + "tooltip": "Happens before every capture", + "group": "4322c187.e73e5", + "order": 4, + "width": 5, + "height": 1, + "wrap": false, + "passthru": true, + "topic": "sleep_before", + "topicType": "str", + "format": "{{value}}", + "min": "0.1", + "max": "5", + "step": "0.1", + "className": "", + "x": 670, + "y": 140, + "wires": [ + [ + "fb887036.12429" + ] + ] + }, + { + "id": "572a6daa.6004c4", + "type": "link in", + "z": "baa1e3d9.cb29d", + "name": "", + "links": [ + "559a8085.1d6b9" + ], + "x": 735, + "y": 60, + "wires": [ + [ + "99b11fe4.2795d" + ] + ] + }, + { + "id": "8032ea50.1b57f", + "type": "ui_template", + "z": "baa1e3d9.cb29d", + "group": "b5d61bc7.54fe48", + "name": "progress header", + "order": 1, + "width": 0, + "height": 0, + "format": "

Capture progress

", + "storeOutMessages": false, + "fwdInMessages": false, + "resendOnRefresh": false, + "templateScope": "local", + "x": 1270, + "y": 820, + "wires": [ + [] + ] + }, + { + "id": "a4abb1ae.2ae418", + "type": "subflow:1c24ad9c.bebec2", + "z": "baa1e3d9.cb29d", + "name": "", + "env": [], + "x": 890, + "y": 480, + "wires": [ + [] + ] + }, + { + "id": "4be09c97f86897d9", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "get nb_frame", + "func": "msg.payload = msg.payload.nb_frame;\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 330, + "y": 220, + "wires": [ + [ + "51b4d0df.d70a88" + ] + ] + }, + { + "id": "f573206abefa9518", + "type": "function", + "z": "baa1e3d9.cb29d", + "name": "get imaging_pump_volume", + "func": "msg.payload = msg.payload.imaging_pump_volume;\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 380, + "y": 260, + "wires": [ + [ + "0df8d1d86af6455a" + ] + ] 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The segmentation is run recursively in all folders. So if you select a top level folder, the segmentation will be run in all subfolders.\n
Also, you will be able to chose wether for force the segmentation for folders in which it has run already.
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\n \"If\n
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+ "p": "obj_counter", + "pt": "flow", + "to": "0", + "tot": "num" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 1020, + "y": 840, + "wires": [ + [ + "fa3b7929.ac7da8", + "9d53dbe2.dbffe8" + ] + ] + }, + { + "id": "6bce0f60.f48998", + "type": "link in", + "z": "cb95299c.2817c8", + "name": "", + "links": [ + "596fc9d4.46c75" + ], + "x": 855, + "y": 840, + "wires": [ + [ + "4f3f7c4a.cb21c4", + "ac439738.28bc18" + ] + ] + }, + { + "id": "596fc9d4.46c75", + "type": "link out", + "z": "cb95299c.2817c8", + "name": "", + "links": [ + "6bce0f60.f48998" + ], + "x": 715, + "y": 500, + "wires": [] + }, + { + "id": "c72a1064.1ec388", + "type": "change", + "z": "cb95299c.2817c8", + "name": "Reset counters", + "rules": [ + { + "t": "set", + "p": "topic", + "pt": "msg", + "to": "object count", + "tot": "str" + }, + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "0", + "tot": "num" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 600, + "y": 500, + "wires": [ + [ + "596fc9d4.46c75" + ] + ] + }, + { + "id": "9367534a.fb8568", + "type": "ui_multistate_switch", + "z": "cb95299c.2817c8", + "name": "Ecotaxa archive", + "group": "abeb6dad.635a2", + "order": 6, + "width": 5, + "height": 1, + "label": "Ecotaxa archive", + "stateField": "payload", + "enableField": "enable", + "rounded": true, + "useThemeColors": true, + "hideSelectedLabel": false, + "options": [ + { + "label": "No", + "value": "0", + "valueType": "num", + "color": "#009933" + }, + { + "label": "Yes", + "value": "1", + "valueType": "num", + "color": "#999999" + } + ], + "x": 1080, + "y": 220, + "wires": [ + [ + "25ac4f9a.5b05c8" + ] + ] + }, + { + "id": "25ac4f9a.5b05c8", + "type": "change", + "z": "cb95299c.2817c8", + "name": "", + "rules": [ + { + "t": "set", + "p": "ecotaxa", + "pt": "flow", + "to": "payload", + "tot": "msg" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 1280, + "y": 240, + "wires": [ + [] + ] + }, + { + "id": "bef78886.8f0b98", + "type": "inject", + "z": "cb95299c.2817c8", + "name": "1", + "props": [ + { + "p": "payload" + } + ], + "repeat": "", + "crontab": "", + "once": true, + "onceDelay": 0.1, + "topic": "", + "payload": "1", + "payloadType": "num", + "x": 910, + "y": 240, + "wires": [ + [ + "9367534a.fb8568", + "25ac4f9a.5b05c8" + ] + ] + }, + { + "id": "32465a4e.8fcac6", + "type": "ui_multistate_switch", + "z": "cb95299c.2817c8", + "name": "Keep objects", + "group": "abeb6dad.635a2", + "order": 5, + "width": 5, + "height": 1, + "label": "Keep objects", + "stateField": "payload", + "enableField": "enable", + "rounded": true, + "useThemeColors": true, + "hideSelectedLabel": false, + "options": [ + { + "label": "No", + "value": "0", + "valueType": "num", + "color": "#009933" + }, + { + "label": "Yes", + "value": "1", + "valueType": "num", + "color": "#999999" + } + ], + "x": 1070, + "y": 300, + "wires": [ + [ + "8dd6f57f.b77f98" + ] + ] + }, + { + "id": "8dd6f57f.b77f98", + "type": "change", + "z": "cb95299c.2817c8", + "name": "", + "rules": [ + { + "t": "set", + "p": "keep", + "pt": "flow", + "to": "payload", + "tot": "msg" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 1270, + "y": 280, + "wires": [ + [] + ] + }, + { + "id": "8090df89.c029e", + "type": "inject", + "z": "cb95299c.2817c8", + "name": "1", + "props": [ + { + "p": "payload" + } + ], + "repeat": "", + "crontab": "", + "once": true, + "onceDelay": 0.1, + "topic": "", + "payload": "1", + "payloadType": "num", + "x": 910, + "y": 280, + "wires": [ + [ + "32465a4e.8fcac6", + "8dd6f57f.b77f98" + ] + ] + }, + { + "id": "56971109c8be3b54", + "type": "ui_text_input", + "z": "cb95299c.2817c8", + "name": "process_id", + "label": "Process unique ID*", + "tooltip": "", + "group": "abeb6dad.635a2", + "order": 2, + "width": 10, + "height": 1, + "passthru": true, + "mode": "text", + "delay": 300, + "topic": "process_id", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 790, + "y": 380, + "wires": [ + [ + "c8749cbb.55254" + ] + ] + }, + { + "id": "2911fbc6.d28c24", + "type": "ui_template", + "z": "c1660bc.e7ff7f8", + "group": "c0ebfc57.42527", + "name": "Image browser", + "order": 1, + "width": "0", + "height": "0", + "format": "
\n\n
", + "storeOutMessages": true, + "fwdInMessages": true, + "resendOnRefresh": false, + "templateScope": "local", + "className": "", + "x": 400, + "y": 100, + "wires": [ + [] + ] + }, + { + "id": "4f02c726.de69b8", + "type": "ui_button", + "z": "9daf9e2b.019fc", + "name": "", + "group": "a7d64879.38298", + "order": 4, + "width": "6", + "height": 1, + "passthru": false, + "label": "Reboot", + "tooltip": "", + "color": "", + "bgcolor": "#AD1625", + "className": "", + "icon": "fa-repeat fa-2x", + "payload": "reboot", + "payloadType": "str", + "topic": "reboot", + "topicType": "str", + "x": 160, + "y": 240, + "wires": [ + [ + "611a8b1c.a829b4" + ] + ] + }, + { + "id": "611a8b1c.a829b4", + "type": "exec", + "z": "9daf9e2b.019fc", + "command": "sudo", + "addpay": "payload", + "append": "now", + "useSpawn": "false", + "timer": "2", + "winHide": false, + "oldrc": false, + "name": "sudo cmd now", + "x": 480, + "y": 280, + "wires": [ + [], + [], + [] + ] + }, + { + "id": "bc76c4d6.a7ad28", + "type": "ui_button", + "z": "9daf9e2b.019fc", + "name": "", + "group": "a7d64879.38298", + "order": 5, + "width": "6", + "height": 1, + "passthru": false, + "label": "Shutdown", + "tooltip": "", + "color": "", + "bgcolor": "#AD1625", + "className": "", + "icon": "fa-power-off fa-2x", + "payload": "shutdown", + "payloadType": "str", + "topic": "shutdown", + "topicType": "str", + "x": 160, + "y": 320, + "wires": [ + [ + "611a8b1c.a829b4" + ] + ] + }, + { + "id": "d12008a0.47be4", + "type": "ui_template", + "z": "9daf9e2b.019fc", + "group": "1be83144.4fe4bf", + "name": "Node-RED Log table", + "order": 1, + "width": 12, + "height": 10, + "format": "\n\n

\n Note: this panel only shows certain errors generated within the Node-RED dashboard. Actual logs should be instead accessed from the \"Logs\" panel on this page.\n

\n\n\n Copy Log\n\n\n\n \n \n \n
{{row}}
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"", + "payloadType": "str", + "topic": "", + "topicType": "str", + "x": 340, + "y": 660, + "wires": [ + [ + "73500be7.9ab7c4" + ] + ] + }, + { + "id": "9187bf97.9922b8", + "type": "catch", + "z": "9daf9e2b.019fc", + "name": "Catch Errors", + "scope": null, + "uncaught": false, + "x": 150, + "y": 580, + "wires": [ + [ + "f9a871d5.a73828" + ] + ] + }, + { + "id": "f9a871d5.a73828", + "type": "function", + "z": "9daf9e2b.019fc", + "name": "Get error", + "func": "msg.payload = \"Node Red Error: \" + msg.error + \" created by the message \" + msg.payload;\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 420, + "y": 580, + "wires": [ + [ + "8b511c2b.9c24c8" + ] + ] + }, + { + "id": "73500be7.9ab7c4", + "type": "function", + "z": "9daf9e2b.019fc", + "name": "Clear Node-RED log", + "func": "flow.set(\"nodered_log\", [\"Log cleared!\"]);\n\nmsg.payload = [\"Log cleared!\"];\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 580, + "y": 660, + "wires": [ + [ + "d12008a0.47be4" + ] + ] + }, + { + "id": "50f9b5b.a84bccc", + "type": "inject", + "z": "9daf9e2b.019fc", + "name": "Default: ON", + "props": [ + { + "p": "payload" + } + ], + "repeat": "", + "crontab": "", + "once": true, + "onceDelay": "0.01", + "topic": "", + "payload": "true", + "payloadType": "bool", + "x": 150, + "y": 100, + "wires": [ + [ + "ae3c28d0ec056b4a", + "81b84006deb8bda6", + "f6d2cd9f04d5b7ba", + "312003ed9b9014ab" + ] + ] + }, + { + "id": "f4f6e3fa.0234f", + "type": "inject", + "z": "9daf9e2b.019fc", + "name": "once", + "props": [ + { + "p": "payload" + } + ], + "repeat": "", + "crontab": "", + "once": true, + "onceDelay": "", + "topic": "", + "payload": "start", + "payloadType": "str", + "x": 170, + "y": 660, + "wires": [ + [ + "7a1dedf.1c63094" + ] + ] + }, + { + "id": "b81b990a.d4dca", + "type": "link in", + "z": "9daf9e2b.019fc", + "name": "Shutdown", + "links": [ + "e08cfcb8.2a67e8" + ], + "x": 195, + 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410, + "y": 160, + "wires": [] + }, + { + "id": "ea4fae012404854c", + "type": "ui_button", + "z": "9daf9e2b.019fc", + "name": "", + "group": "a7d64879.38298", + "order": 2, + "width": "6", + "height": 1, + "passthru": true, + "label": "Restart Hardware Controller", + "tooltip": "", + "color": "", + "bgcolor": "#AD1625", + "className": "", + "icon": "fa-refresh fa-2x", + "payload": "Restarting hardware controller...", + "payloadType": "str", + "topic": "", + "topicType": "str", + "x": 440, + "y": 420, + "wires": [ + [ + "c54d948575dbcff8", + "d10f3ffd98055447" + ] + ] + }, + { + "id": "438febd245a9f73c", + "type": "link in", + "z": "9daf9e2b.019fc", + "name": "Restart Hardware Controller", + "links": [ + "e41870d7.300eb8" + ], + "x": 195, + "y": 420, + "wires": [ + [ + "ea4fae012404854c" + ] + ] + }, + { + "id": "c54d948575dbcff8", + "type": "exec", + "z": "9daf9e2b.019fc", + "command": "sudo systemctl restart planktoscope-org.device-backend.controller-pscopehat.service", + "addpay": 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"oldrc": false, + "name": "Restart segmenter", + "x": 750, + "y": 500, + "wires": [ + [], + [], + [] + ] + }, + { + "id": "7b64209d734e4e2c", + "type": "ui_template", + "z": "9daf9e2b.019fc", + "group": "a7d64879.38298", + "name": "Logs", + "order": 1, + "width": "0", + "height": "0", + "format": "

\n The PlanktoScope software application consists of three components: a Node-RED dashboard which provides the user interface you're using; a Hardware Controller\n which executes commands sent from the Node-RED dashboard for hardware control and image acquisition; and a Segmenter which processes an acquired dataset of\n images and isolates objects from those images. Each component has its own independent log of messages, managed separately from the logs for the other components.\n

\n

\n All three components have live-updating logs which you can monitor. Additionally, the Hardware Controller and the Segmenter also save all of their log messages\n to files which you can browse and download. Those software components create a new log file each time they start, and the name of the log file includes the time\n in the PlanktoScope's clock when the software component started. However, if your PlanktoScope's clock is usually wrong, it makes the log files difficult to navigate.\n This will be fixed in a future version of the software.\n

\n

\n If you need to share your logs with other people (e.g. on Slack or GitHub), you should open the \"Downloadable Logs\" links, and then you can select one file or multiple\n log files for downloading as a zip archive.\n

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"sendall": true, + "outputs": 1, + "ok": "OK", + "cancel": "", + "raw": false, + "topic": "", + "name": "", + "x": 710, + "y": 880, + "wires": [ + [] + ] + }, + { + "id": "72f5e8d4.40fcb8", + "type": "ui_toast", + "z": "1371dec5.76e671", + "position": "top right", + "displayTime": "5", + "highlight": "", + "sendall": true, + "outputs": 0, + "ok": "OK", + "cancel": "", + "raw": false, + "topic": "", + "name": "", + "x": 930, + "y": 900, + "wires": [] + }, + { + "id": "81a48376.27a66", + "type": "ui_toast", + "z": "1371dec5.76e671", + "position": "dialog", + "displayTime": "5", + "highlight": "", + "sendall": true, + "outputs": 1, + "ok": "OK", + "cancel": "", + "raw": false, + "topic": "", + "name": "", + "x": 1110, + "y": 980, + "wires": [ + [] + ] + }, + { + "id": "a2c36500.6d376", + "type": "function", + "z": "1371dec5.76e671", + "name": "return code", + "func": "switch (msg.payload.code){\ncase 0:\n msg.payload = \"All files successfully copied, you can remove your usb drive!\";\n break;\ncase 1:\n msg.payload = \"There was an error!\";\n break;\ncase 2:\n msg.payload = \"Error: your device is already mounted\"\n break;\ncase 3:\n msg.payload = \"Error while mounting the device\"\n break;\ncase 4:\n msg.payload = \"Error: some files were corrupted during the copy!\"\n break;\n}\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 910, + "y": 940, + "wires": [ + [ + "81a48376.27a66" + ] + ] + }, + { + "id": "dde0025c.3df9f", + "type": "ui_button", + "z": "1371dec5.76e671", + "name": "Purge local", + "group": "52d1b77.28369c8", + "order": 4, + "width": 0, + "height": 0, + "passthru": false, + "label": "Purge local data", + "tooltip": "", + "color": "", + "bgcolor": "#AD1625", + "icon": "delete_forever", + "payload": "THIS IS GOING TO WIPE ALL THE LOCAL DATA. MAKE SURE YOU DID A BACKUP TO AN USB DRIVE BEFOREHAND.", + "payloadType": "str", + "topic": "BE EXTRA CAREFUL", + "x": 150, + "y": 1020, + "wires": [ + [ + "ba72704a.8a38a" + ] + ] + }, + { + "id": "ba72704a.8a38a", + "type": "ui_toast", + "z": "1371dec5.76e671", + "position": "dialog", + "displayTime": "5", + "highlight": "", + "sendall": true, + "outputs": 1, + "ok": "GO BACK", + "cancel": "YES I'M SURE, I WANT TO PURGE THE DATA", + "raw": false, + "topic": "Data purge", + "name": "", + "x": 330, + "y": 1020, + "wires": [ + [ + "d80e6307.3aaf8" + ] + ] + }, + { + "id": "d80e6307.3aaf8", + "type": "switch", + "z": "1371dec5.76e671", + "name": "", + "property": "payload", + "propertyType": "msg", + "rules": [ + { + "t": "cont", + "v": "YES I'M SURE", + "vt": "str" + } + ], + "checkall": "true", + "repair": false, + "outputs": 1, + "x": 510, + "y": 1020, + "wires": [ + [ + "4a8cb5d4.52e4bc" + ] + ] + }, + { + "id": "4a8cb5d4.52e4bc", + "type": "exec", + "z": "1371dec5.76e671", + "command": "rm -rf /home/pi/data/img /home/pi/data/objects /home/pi/data/export", + "addpay": false, + "append": "", + "useSpawn": "false", + "timer": "", + "oldrc": false, + "name": "rm data", + "x": 700, + "y": 1020, + "wires": [ + [ + "c5b1e763.d1bba8" + ], + [], + [] + ] + }, + { + "id": "c5b1e763.d1bba8", + "type": "function", + "z": "1371dec5.76e671", + "name": "error message", + "func": "// TODO revoir cette partie\n\nswitch (msg.rc.code){\ncase 0:\n msg.payload = \"/home/pi/data was purged successfully!\";\n break;\ndefault:\n msg.payload = \"There was an error! The error is \" + msg.rc.message;\n break;\n}\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 900, + "y": 1020, + "wires": [ + [ + "81a48376.27a66" + ] + ] + }, + { + "id": "6d09f428.930bcc", + "type": "delay", + "z": "1371dec5.76e671", + "name": "", + "pauseType": "rate", + "timeout": "5", + "timeoutUnits": "seconds", + "rate": "1", + "nbRateUnits": "5", + "rateUnits": "minute", + "randomFirst": "1", + "randomLast": "5", + "randomUnits": "seconds", + "drop": true, + "allowrate": false, + "outputs": 1, + "x": 760, + "y": 120, + "wires": [ + [ + "24df077a.cb252" + ] + ] + }, + { + "id": "4997446.5176d3c", + "type": "change", + "z": "1371dec5.76e671", + "name": "Backup starting message", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "\"The backup is starting now, please wait for the complete message before removing the drive\"", + "tot": "str" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 750, + "y": 980, + "wires": [ + [ + "81a48376.27a66" + ] + ] + }, + { + "id": "6c7f0cc5.ea30d4", + "type": "gpsd", + "z": "1371dec5.76e671", + "name": "", + "hostname": "localhost", + "port": "2947", + "tpv": true, + "sky": false, + "info": false, + "device": false, + "gst": false, + "att": false, + "x": 170, + "y": 1360, + "wires": [ + [ + "906072b1.42c7c8", + "cd3b05d6.5a3e2", + "9b29e0e2.475e08", + "96fefa8b.b7d538", + "49a98fe9.9450d8", + "f2a62d0.f5e135" + ] + ] + }, + { + "id": "96bc0179.5c37", + "type": "ui_text", + "z": "1371dec5.76e671", + "group": "cfe2288f.a8862", + "order": 1, + "width": 6, + "height": 1, + "name": "GPS Status Display", + "label": "GPS Status:", + "format": "{{msg.payload}}", + "layout": "row-center", + "x": 660, + "y": 1200, + "wires": [] + }, + { + "id": "8c731f52.2b5f3", + "type": "ui_text", + "z": "1371dec5.76e671", + "group": "cfe2288f.a8862", + "order": 5, + "width": 3, + "height": 1, + "name": "Latitude", + "label": "Latitude", + "format": "{{msg.payload.lat.deg}}°{{msg.payload.lat.min}}'{{msg.payload.lat.sec}}{{msg.payload.lat.dir}}", + "layout": "col-center", + "x": 620, + "y": 1240, + "wires": [] + }, + { + "id": "34e4b5ea.27b4a2", + "type": "ui_text", + "z": "1371dec5.76e671", + "group": "cfe2288f.a8862", + "order": 6, + "width": 3, + "height": 1, + "name": "Longitude", + "label": "Longitude", + "format": "{{msg.payload.lon.deg}}°{{msg.payload.lon.min}}'{{msg.payload.lon.sec}}{{msg.payload.lon.dir}}", + "layout": "col-center", + "x": 620, + "y": 1280, + "wires": [] + }, + { + "id": "906072b1.42c7c8", + "type": "function", + "z": "1371dec5.76e671", + "name": "Convert DD to DMS", + "func": "function ConvertDDToDMS(D, lng){\n // from https://stackoverflow.com/a/5786281/2108279\n return {\n dir : D<0?lng?'W':'S':lng?'E':'N',\n deg : 0|(D<0?D=-D:D),\n min : 0|D%1*60,\n sec :(0|D*60%1*6000)/100\n };\n}\n\nmsg.payload = {\n \"lat\":ConvertDDToDMS(msg.payload.lat, false),\n \"lon\":ConvertDDToDMS(msg.payload.lon, true)\n};\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 420, + "y": 1260, + "wires": [ + [ + "8c731f52.2b5f3", + "34e4b5ea.27b4a2" + ] + ] + }, + { + "id": "4584c817.0be238", + "type": "ui_text", + "z": "1371dec5.76e671", + "group": "cfe2288f.a8862", + "order": 3, + "width": 3, + "height": 1, + "name": "Speed", + "label": "Speed", + "format": "{{msg.payload}} kts", + "layout": "col-center", + "x": 610, + "y": 1320, + "wires": [] + }, + { + "id": "cd3b05d6.5a3e2", + "type": "ui_text", + "z": "1371dec5.76e671", + "group": "cfe2288f.a8862", + "order": 4, + "width": 3, + "height": 1, + "name": "Direction", + "label": "Direction", + "format": "{{msg.payload.track}} °", + "layout": "col-center", + "x": 620, + "y": 1360, + "wires": [] + }, + { + "id": "9b29e0e2.475e08", + "type": "function", + "z": "1371dec5.76e671", + "name": "GPS Mode", + "func": "switch (msg.payload.mode){\n case 1:msg.payload = \"No Fix\"; break\n case 2:msg.payload = \"2D Fix\"; break\n case 3:msg.payload = \"3D Fix\"; break\n default: msg.payload = \"No info\"\n}\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 390, + "y": 1200, + "wires": [ + [ + "96bc0179.5c37" + ] + ] + }, + { + "id": "96fefa8b.b7d538", + "type": "function", + "z": "1371dec5.76e671", + "name": "Speed conversion", + "func": "msg.payload = (0|msg.payload.speed) * 1.9438\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 410, + "y": 1320, + "wires": [ + [ + "4584c817.0be238" + ] + ] + }, + { + "id": "49a98fe9.9450d8", + "type": "ui_text", + "z": "1371dec5.76e671", + "group": "cfe2288f.a8862", + "order": 2, + "width": 6, + "height": 1, + "name": "GPS UTC datetime", + "label": "GPS UTC datetime", + "format": "{{msg.payload.time}}", + "layout": "col-center", + "x": 650, + "y": 1400, + "wires": [] + }, + { + "id": "3c3f334e.d691ac", + "type": "ui_button", + "z": "1371dec5.76e671", + "name": "", + "group": "cfe2288f.a8862", + "order": 6, + "width": 0, + "height": 0, + "passthru": false, + "label": "Force local clock update", + "tooltip": "", + "color": "", + "bgcolor": "", + "icon": "", + "payload": "", + "payloadType": "str", + "topic": "topic", + "x": 670, + "y": 1480, + "wires": [ + [ + "c60030d4.317418" + ] + ] + }, + { + "id": "c60030d4.317418", + "type": "exec", + "z": "1371dec5.76e671", + "command": "sudo hwclock -w", + "addpay": false, + "append": "", + "useSpawn": "false", + "timer": "", + "oldrc": false, + "name": "", + "x": 920, + "y": 1480, + "wires": [ + [], + [], + [] + ] + }, + { + "id": "6d144078.508d9", + "type": "ui_text", + "z": "1371dec5.76e671", + "group": "cfe2288f.a8862", + "order": 2, + "width": 6, + "height": 1, + "name": "Local UTC datetime", + "label": "Local UTC datetime", + "format": "{{msg.payload}}", + "layout": "col-center", + "x": 660, + "y": 1440, + "wires": [] + }, + { + "id": "f2a62d0.f5e135", + "type": "function", + "z": "1371dec5.76e671", + "name": "", + "func": "msg.payload = new Date()\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 380, + "y": 1440, + "wires": [ + [ + "6d144078.508d9" + ] + ] + }, + { + "id": "952db22920d7d5f1", + "type": "rpi-gpio out", + "z": "1371dec5.76e671", + "name": "Fan", + "pin": "13", + "set": false, + "level": "0", + "freq": "25000", + "out": "pwm", + "bcm": true, + "x": 1110, + "y": 40, + "wires": [] + }, + { + "id": "5883e629f5d546ed", + "type": "file in", + "z": "1371dec5.76e671", + "name": "Get machine name", + "filename": "/var/lib/planktoscope/machine-name", + "filenameType": "str", + "format": "utf8", + "chunk": false, + "sendError": false, + "encoding": "none", + "allProps": false, + "x": 350, + "y": 700, + "wires": [ + [ + "a400a97e.e333a8", + "4828d2f4.7c712c" + ] + ] + }, + { + "id": "9b64f397101c2762", + "type": "change", + "z": "1371dec5.76e671", + "name": "Get acq_instrument", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "payload.acq_instrument", + "tot": "msg" + }, + { + "t": "set", + "p": "topic", + "pt": "msg", + "to": "acq_instrument", + "tot": "str" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 350, + "y": 640, + "wires": [ + [ + "bdc6718a.dd5d48" + ] + ] + }, + { + "id": "99725e1437cc390b", + "type": "file in", + "z": "1371dec5.76e671", + "name": "Versioning File", + "filename": "/home/pi/.local/etc/pkscope-distro/installer-versioning.yml", + "filenameType": "str", + "format": "utf8", + "chunk": false, + "sendError": false, + "encoding": "none", + "allProps": false, + "x": 240, + "y": 540, + "wires": [ + [ + "f4e21e28bd903f6d" + ] + ], + "info": "# PlanktoScope Help\nThis Node will read the content of the file named **config.txt** containing all the input placeholders.\n" + }, + { + "id": "6a0fa173874c3ddd", + "type": "inject", + "z": "1371dec5.76e671", + "name": "once", + "props": [ + { + "p": "payload" + } + ], + "repeat": "", + "crontab": "", + "once": true, + "onceDelay": "", + "topic": "", + "payload": "start", + "payloadType": "str", + "x": 90, + "y": 540, + "wires": [ + [ + "99725e1437cc390b" + ] + ] + }, + { + "id": "f4e21e28bd903f6d", + "type": "yaml", + "z": "1371dec5.76e671", + "property": "payload", + "name": "", + "x": 390, + "y": 540, + "wires": [ + [ + "d6264e3e29b68c6e", + "aa84b912c996c69e", + "fba22dc2c16b3ec8" + ] + ] + }, + { + "id": "d6264e3e29b68c6e", + "type": "change", + "z": "1371dec5.76e671", + "name": "Get version", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "payload.version", + "tot": "msg" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 590, + "y": 540, + "wires": [ + [ + "3e64877a.9684b", + "8343fa69.49339" + ] + ] + }, + { + "id": "aa84b912c996c69e", + "type": "change", + "z": "1371dec5.76e671", + "name": "Get repo", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "payload.repo", + "tot": "msg" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 580, + "y": 500, + "wires": [ + [ + "fd55e7a43d9bdbbb" + ] + ] + }, + { + "id": "fd55e7a43d9bdbbb", + "type": "function", + "z": "1371dec5.76e671", + "name": "set global", + "func": "global.set(\"process_source\", msg.payload);\n", + "outputs": 1, + "timeout": "", + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 820, + "y": 480, + "wires": [ + [] + ] + }, + { + "id": "fba22dc2c16b3ec8", + "type": "change", + "z": "1371dec5.76e671", + "name": "Get commit", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "payload.commit", + "tot": "msg" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 590, + "y": 580, + "wires": [ + [ + "2ddc75a4ac38a17f" + ] + ] + }, + { + "id": "2ddc75a4ac38a17f", + "type": "function", + "z": "1371dec5.76e671", + "name": "set global", + "func": "global.set(\"process_commit\", msg.payload);\n", + "outputs": 1, + "timeout": "", + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 820, + "y": 600, + "wires": [ + [] + ] + }, + { + "id": "797675a937dc1629", + "type": "ui_template", + "z": "1371dec5.76e671", + "group": "3da7da8f.179606", + "name": "Metrics panel", + "order": 2, + "width": "0", + "height": "0", + "format": "
\n

\n The instrument's system time is different from your web browser's time by {{drift}}.\n As a result, timestamps in your datasets will be incorrect.\n Additionally, system metrics will not be recorded or shown correctly.\n Additionally, you will see incorrectly-aligned graphs in the metrics below.\n

\n

Please change the instrument's system time or your web browser's time to accurate values.

\n

\n \n

\n
\n\n
\n

Loading system metrics, please wait...

\n
\n\n
\n \n
\n\n\n", + "storeOutMessages": true, + "fwdInMessages": true, + "resendOnRefresh": false, + "templateScope": "local", + "className": "", + "x": 330, + "y": 280, + "wires": [ + [] + ] + }, + { + "id": "aa2e4cd182dbc776", + "type": "function", + "z": "1371dec5.76e671", + "name": "Get system time", + "func": "var date = new Date();\ndate.setSeconds(0, 0);\nmsg.payload = (\n date.toISOString().replace('T', ' ').replace(/:\\d+\\.\\d+Z/,' UTC')\n);\nreturn msg", + "outputs": 1, + "timeout": "", + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 340, + "y": 240, + "wires": [ + [ + "7c9ee522f6dbd3b0" + ] + ] + }, + { + "id": "7c9ee522f6dbd3b0", + "type": "ui_text", + "z": "1371dec5.76e671", + "group": "ce9e278.781eed8", + "order": 5, + "width": 0, + "height": 0, + "name": "", + "label": "System Time", + "format": "{{msg.payload}}", + "layout": "row-spread", + "className": "", + "style": false, + "font": "", + "fontSize": "", + "color": "#000000", + "x": 590, + "y": 240, + "wires": [] + }, + { + "id": "6dc9862f2eebe935", + "type": "http in", + "z": "1371dec5.76e671", + "name": "POST /api/system-time", + "url": "/api/system-time", + "method": "post", + "upload": false, + "swaggerDoc": "", + "x": 120, + "y": 360, + "wires": [ + [ + "a7994a561866dc94", + "dea222e9a6553cac" + ] + ] + }, + { + "id": "1c4113d4c933fd4b", + "type": "ui_toast", + "z": "1371dec5.76e671", + "position": "top right", + "displayTime": "3", + "highlight": "", + "sendall": true, + "outputs": 0, + "ok": "OK", + "cancel": "", + "raw": false, + "className": "", + "topic": "Setting system time", + "name": "", + "x": 610, + "y": 340, + "wires": [] + }, + { + "id": "a7994a561866dc94", + "type": "function", + "z": "1371dec5.76e671", + "name": "Get system time", + "func": "var date = new Date(msg.payload.timestamp);\nmsg.payload = (\n date.toISOString().replace('T', ' ').replace(/:\\d+\\.\\d+Z/,' UTC')\n);\nreturn msg", + "outputs": 1, + "timeout": "", + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 340, + "y": 340, + "wires": [ + [ + "1c4113d4c933fd4b" + ] + ] + }, + { + "id": "814ce40bfc413777", + "type": "exec", + "z": "1371dec5.76e671", + "command": "sudo date -s", + "addpay": "payload", + "append": "", + "useSpawn": "", + "timer": "", + "winHide": false, + "name": "Set system time", + "x": 600, + "y": 380, + "wires": [ + [], + [], + [] + ] + }, + { + "id": "dea222e9a6553cac", + "type": "function", + "z": "1371dec5.76e671", + "name": "Prepare timestamp", + "func": "msg.payload = ('@' + msg.payload.timestamp).slice(0, -3);\nreturn msg;", + "outputs": 1, + "timeout": "", + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 350, + "y": 380, + "wires": [ + [ + "814ce40bfc413777" + ] + ] + }, + { + "id": "f6f570b10c675854", + "type": "ui_template", + "z": "1371dec5.76e671", + "group": "ce9e278.781eed8", + "name": "Browser time", + "order": 6, + "width": "6", + "height": "1", + "format": "
\n

Browser Time

\n

{{time}}

\n
\n\n", + "storeOutMessages": true, + "fwdInMessages": true, + "resendOnRefresh": false, + "templateScope": "local", + "className": "", + "x": 330, + "y": 200, + "wires": [ + [] + ] + }, + { + "id": "b9bf06d6.26c518", + "type": "exec", + "z": "f21ba04.c26266", + "command": "sudo iwlist wlan0 scan | grep ESSID | sed 's/ESSID://g;s/\"//g;s/^ *//;s/ *$//'", + "addpay": false, + "append": "", + "useSpawn": "false", + "timer": "", + "oldrc": false, + "name": "scan", + "x": 450, + "y": 80, + "wires": [ + [ + "9642cb31.663b4" + ], + [], + [] + ] + }, + { + "id": "9642cb31.663b4", + "type": "function", + "z": "f21ba04.c26266", + "name": "parseOptions", + "func": "var ssids = msg.payload.split('\\n').filter(s => !!s)\n\nssids = [...new Set(ssids)];\n\nmsg.options = ssids\nmsg.payload = null\n\nreturn msg;", + "outputs": 1, + "noerr": 0, + "x": 640, + "y": 80, + "wires": [ + [ + "dbc0d44.5361b28" + ] + ] + }, + { + "id": "dbc0d44.5361b28", + "type": "ui_dropdown", + "z": "f21ba04.c26266", + "name": "", + "label": "Wifi", + "tooltip": "", + "place": "Select a WIFI", + "group": "9e409235.73cd7", + "order": 1, + "width": 0, + "height": 0, + "passthru": false, + "multiple": false, + "options": [], + "payload": "", + "topic": "", + "x": 830, + "y": 80, + "wires": [ + [ + "cdfa9013.b91278" + ] + ] + }, + { + "id": "2bf338e3.966468", + "type": "ui_button", + "z": "f21ba04.c26266", + "name": "", + "group": "9e409235.73cd7", + "order": 2, + "width": 0, + "height": 0, + "passthru": false, + "label": "Scan", + "tooltip": "", + "color": "", + "bgcolor": "", + "icon": "fa-wifi fa-2x", + "payload": "true", + "payloadType": "bool", + "topic": "", + "x": 270, + "y": 40, + "wires": [ + [ + "b9bf06d6.26c518" + ] + ] + }, + { + "id": "4c0400c.69a1e8", + "type": "exec", + "z": "f21ba04.c26266", + "command": "ip -j addr show", + "addpay": false, + "append": "", + "useSpawn": "false", + "timer": "", + "oldrc": false, + "name": "getInfo", + "x": 450, + "y": 180, + "wires": [ + [ + "88e05f37a8745216" + ], + [], + [] + ] + }, + { + "id": "bcb20e39.00cea8", + "type": "function", + "z": "f21ba04.c26266", + "name": "parse IP Info", + "func": "var ip = \"\";\nvar broadcast = \"\";\nvar iface = \"\";\nvar iface_up = false;\n\nif (msg.rc.code === 0){\n payload = msg.payload\n for (let info in payload) {\n if (payload[info].operstate === \"UP\") {\n \tif (iface_up){\n \t// We have two concurrent interfaces up\n // We need to deactivate one\n ip = \"Remove Ethernet cable or disconnect wifi\"\n broadcast = \"Remove Ethernet cable or disconnect wifi\"\n iface = \"Remove Ethernet cable or disconnect wifi\"\n break\n }\n if (payload[info].ifname === \"eth0\") {\n iface = \"Ethernet\"\n } else if (payload[info].ifname === \"wifi0\" || payload[info].ifname === \"wlan0\") {\n iface = \"Wifi\"\n }\n ip = payload[info].addr_info[0].local;\n broadcast = payload[info].addr_info[0].broadcast;\n iface_up = true;\n }\n }\n}\n\nif (iface_up) {\n return([{\n topic: 'interface',\n payload: iface\n }, {\n topic: 'ip',\n payload: ip\n }, {\n topic: 'broadcast',\n payload: broadcast\n }])\n}\n", + "outputs": 3, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 730, + "y": 180, + "wires": [ + [ + "67d052ba.99ff24" + ], + [ + "d71c8185.800fd" + ], + [ + "dc305a26.b33fc" + ] + ], + "outputLabels": [ + "interface", + "ip", + "broadcast" + ] + }, + { + "id": "d71c8185.800fd", + "type": "ui_text", + "z": "f21ba04.c26266", + "group": "919923a3.d10868", + "order": 2, + "width": 0, + "height": 0, + "name": "", + "label": "IP", + "format": "{{msg.payload || '---'}}", + "layout": "row-spread", + "x": 930, + "y": 180, + "wires": [] + }, + { + "id": "67d052ba.99ff24", + "type": "ui_text", + "z": "f21ba04.c26266", + "group": "919923a3.d10868", + "order": 1, + "width": 0, + "height": 0, + "name": "", + "label": "Interface", + "format": "{{msg.payload || '---'}}", + "layout": "row-spread", + "x": 940, + "y": 140, + "wires": [] + }, + { + "id": "dc305a26.b33fc", + "type": "ui_text", + "z": "f21ba04.c26266", + "group": "919923a3.d10868", + "order": 3, + "width": 0, + "height": 0, + "name": "", + "label": "Broadcast", + "format": "{{msg.payload || '---'}}", + "layout": "row-spread", + "x": 950, + "y": 219, + "wires": [] + }, + { + "id": "94b2e8fc.aa20e", + "type": "ui_form", + "z": "f21ba04.c26266", + "name": "", + "label": "Update", + "group": "9e409235.73cd7", + "order": 3, + "width": 0, + "height": 0, + "options": [ + { + "label": "SSID", + "value": "ssid", + "type": "text", + "required": true, + "rows": null + }, + { + "label": "Password", + "value": "password", + "type": "text", + "required": true, + "rows": null + } + ], + "formValue": { + "ssid": "", + "password": "" + }, + "payload": "", + "submit": "Add the network", + "cancel": "Reset fields", + "topic": "", + "x": 1160, + "y": 80, + "wires": [ + [ + "d59021e3.1b63e8" + ] + ] + }, + { + "id": "cdfa9013.b91278", + "type": "function", + "z": "f21ba04.c26266", + "name": "insert ssid", + "func": "\nmsg.payload = {ssid: msg.payload}\n\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 990, + "y": 80, + "wires": [ + [ + "94b2e8fc.aa20e" + ] + ] + }, + { + "id": "448b4c37.be50bc", + "type": "exec", + "z": "f21ba04.c26266", + "command": "iw dev wlan0 info", + "addpay": false, + "append": "", + "useSpawn": "false", + "timer": "", + "oldrc": false, + "name": "getCurrentSSID", + "x": 480, + "y": 260, + "wires": [ + [ + "151819d4.0dbe56" + ], + [], + [] + ] + }, + { + "id": "c8a5ae48.ef1308", + "type": "ui_text", + "z": "f21ba04.c26266", + "group": "919923a3.d10868", + "order": 4, + "width": 0, + "height": 0, + "name": "", + "label": "SSID", + "format": "{{msg.payload || '---'}}", + "layout": "row-spread", + "x": 930, + "y": 259, + "wires": [] + }, + { + "id": "151819d4.0dbe56", + "type": "function", + "z": "f21ba04.c26266", + "name": "parse SSID", + "func": "var ssid = \"\"\n\nif (msg.rc.code === 0){\n ssid = msg.payload.match(/\\sssid (.+)/)[1];\n return({topic: 'ssid', payload: ssid})\n}\n", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 730, + "y": 260, + "wires": [ + [ + "c8a5ae48.ef1308" + ] + ] + }, + { + "id": "ff059f3f.9c0f28", + "type": "ui_ui_control", + "z": "f21ba04.c26266", + "name": "onTab", + "events": "all", + "x": 130, + "y": 80, + "wires": [ + [ + "f103cd20eb4362a4" + ] + ] + }, + { + "id": "167d7bd0.679ce4", + "type": "function", + "z": "f21ba04.c26266", + "name": "update contry code", + "func": "var template = `sudo sed -i \\\"s/^country.*/country=\"${msg.payload}\"/\\\" /home/pi/wpa_supplicant.conf`\n// sudo tee /etc/wpa_supplicant/wpa_supplicant.conf < /dev/null`\n \nmsg.payload = command\n\nreturn msg", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 1330, + "y": 80, + "wires": [ + [ + "64a1f2f2.3de8b4" + ] + ] + }, + { + "id": "64a1f2f2.3de8b4", + "type": "exec", + "z": "f21ba04.c26266", + "command": "", + "addpay": true, + "append": "", + "useSpawn": "false", + "timer": "", + "oldrc": false, + "name": "Save Network", + "x": 1520, + "y": 80, + "wires": [ + [ + "6868b4c4.65987c" + ], + [], + [] + ] + }, + { + "id": "6868b4c4.65987c", + "type": "exec", + "z": "f21ba04.c26266", + "command": "sudo /usr/bin/autohotspotN >/dev/null", + "addpay": false, + "append": "", + "useSpawn": "true", + "timer": "", + "oldrc": false, + "name": "reconfigure", + "x": 1710, + "y": 80, + "wires": [ + [ + "59e24c40.e1a4dc" + ], + [], + [] + ] + }, + { + "id": "59e24c40.e1a4dc", + "type": "function", + "z": "f21ba04.c26266", + "name": "showMessage", + "func": "msg.payload = \"Wifi configuration updated successfully, please connect to the network you just used.\"\nreturn msg;", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "x": 1440, + "y": 180, + "wires": [ + [ + "4ecb6be2.ad39f4" + ] + ] + }, + { + "id": "4ecb6be2.ad39f4", + "type": "ui_toast", + "z": "f21ba04.c26266", + "position": "dialog", + "displayTime": "3", + "highlight": "", + "sendall": true, + "outputs": 1, + "ok": "OK", + "cancel": "", + "raw": false, + "topic": "", + "name": "", + "x": 1650, + "y": 180, + "wires": [ + [] + ] + }, + { + "id": "991d1df9.3ffb3", + "type": "function", + "z": "f21ba04.c26266", + "name": "reset wpa_supplicant.conf", + "func": "country_code = flow.get(\"country_code\")\n\nvar template = `sudo tee /etc/wpa_supplicant/wpa_supplicant.conf <Stepper controller type", + "storeOutMessages": true, + "fwdInMessages": true, + "resendOnRefresh": true, + "templateScope": "local", + "className": "", + "x": 550, + "y": 100, + "wires": [ + [] + ] + }, + { + "id": "7534dfd9.8cf3e8", + "type": "ui_template", + "z": "1eaf21c8.f7a21e", + "group": "6be36295.0ab324", + "name": "Information", + "order": 1, + "width": "8", + "height": "3", + "format": "
\n

\n Changing one of these values will cause the Python hardware controller to restart, to reload the new hardware configuration.\n

\n

\n Warning: selecting a hardware version from the dropdown menu below will also overwrite all of your hardware settings, including your camera white balance settings.\n

\n

\n If you are not sure, you probably should not be touching anything here!\n

\n
\n", + "storeOutMessages": true, + "fwdInMessages": true, + "resendOnRefresh": true, + "templateScope": "local", + "className": "", + "x": 610, + "y": 60, + "wires": [ + [] + ] + }, + { + "id": "a7e5c7f4.644678", + "type": "ui_dropdown", + "z": "1eaf21c8.f7a21e", + "name": "", + "label": "Hardware version", + "tooltip": "", + "place": "Select option", + "group": "6be36295.0ab324", + "order": 2, + "width": 0, + "height": 0, + "passthru": false, + "multiple": false, + "options": [ + { + "label": "", + "value": "PlanktoScope v2.1", + "type": "str" + }, + { + "label": "", + "value": "PlanktoScope v2.3", + "type": "str" + }, + { + "label": "", + "value": "PlanktoScope v2.5", + "type": "str" + }, + { + "label": "", + "value": "PlanktoScope v2.6", + "type": "str" + } + ], + "payload": "", + "topic": "acq_instrument", + "topicType": "str", + "className": "", + "x": 590, + "y": 160, + "wires": [ + [ + "3e2c5c1c.4c57b4", + "68703ef63da2f081", + "d276ce894f483bcf" + ] + ] + }, + { + "id": 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670, + "y": 480, + "wires": [ + [ + "244ca5dd62df2bcd" + ] + ] + }, + { + "id": "244ca5dd62df2bcd", + "type": "ui_text_input", + "z": "1eaf21c8.f7a21e", + "name": "process_pixel_fixed", + "label": "Pixel size calibration: um per pixel", + "tooltip": "Object size in µm / pixel. 0 will remove this calibration.", + "group": "6be36295.0ab324", + "order": 8, + "width": 0, + "height": 0, + "passthru": true, + "mode": "number", + "delay": "1000", + "topic": "process_pixel_fixed", + "sendOnBlur": true, + "className": "", + "topicType": "str", + "x": 940, + "y": 480, + "wires": [ + [ + "8e3b3d3c.955148", + "f9b47f4b1da15778" + ] + ] + }, + { + "id": "f9b47f4b1da15778", + "type": "function", + "z": "1eaf21c8.f7a21e", + "name": "Set or remove if null", + "func": "if (msg.payload == 0){\n global.set(msg.topic,undefined)\n}\nelse {\n global.set(msg.topic,msg.payload);\n}\n\nreturn msg", + "outputs": 1, + "noerr": 0, + "initialize": "", + "finalize": "", + "libs": [], + "x": 1220, + "y": 480, + "wires": [ + [ + "5d5ad36d2c50dcc2" + ] + ] + }, + { + "id": "5d5ad36d2c50dcc2", + "type": "link out", + "z": "1eaf21c8.f7a21e", + "name": "Process_pixel calibration", + "links": [ + "cfc783d7.d6ceb" + ], + "x": 1495, + "y": 500, + "wires": [] + }, + { + "id": "6146ba22df928516", + "type": "ui_dropdown", + "z": "1eaf21c8.f7a21e", + "name": "acq_fnumber_objective", + "label": "M12 Lens", + "tooltip": "", + "place": "Select option", + "group": "6be36295.0ab324", + "order": 7, + "width": 0, + "height": 0, + "passthru": true, + "multiple": false, + "options": [ + { + "label": "f 25mm 1/2\" 5MP IR", + "value": 25, + "type": "num" + }, + { + "label": "f 16mm 1/2.5\" 5MP IR", + "value": 16, + "type": "num" + }, + { + "label": "f 12mm 1/2.5\" 5MP IR", + "value": 12, + "type": "num" + }, + { + "label": "f 8mm 1/2.5\" 5MP IR", + "value": 8, + "type": "num" + }, + { + "label": "f 6mm 1/2.5\" 5MP IR", + "value": 6, + "type": "num" + } + ], + "payload": "", + "topic": "acq_fnumber_objective", + "topicType": "str", + "x": 930, + "y": 520, + "wires": [ + [ + "a6983d3232b570a7", + "8e3b3d3c.955148" + ] + ] + }, + { + "id": "a6983d3232b570a7", + "type": "change", + "z": "1eaf21c8.f7a21e", + "name": "", + "rules": [ + { + "t": "set", + "p": "acq_fnumber_objective", + "pt": "global", + "to": "payload", + "tot": "msg" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 1260, + "y": 520, + "wires": [ + [ + "5d5ad36d2c50dcc2" + ] + ] + }, + { + "id": "11955bbeefc29ab4", + "type": "change", + "z": "1eaf21c8.f7a21e", + "name": "Get acq_fnumber_objective", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "payload.acq_fnumber_objective", + "tot": "msg" + }, + { + "t": "set", + "p": "topic", + "pt": "msg", + "to": "acq_fnumber_objective", + "tot": "str" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 680, + "y": 520, + "wires": [ + [ + "6146ba22df928516" + ] + ] + }, + { + "id": "d276ce894f483bcf", + "type": "ui_toast", + "z": "1eaf21c8.f7a21e", + "position": "top right", + "displayTime": "3", + "highlight": "", + "sendall": true, + "outputs": 0, + "ok": "OK", + "cancel": "", + "raw": false, + "className": "", + "topic": "Resetting hardware configuration to version-specific default", + "name": "", + "x": 850, + "y": 120, + "wires": [] + }, + { + "id": "68703ef63da2f081", + "type": "change", + "z": "1eaf21c8.f7a21e", + "name": "Choose default hardware config", + "rules": [ + { + "t": "set", + "p": "payload", + "pt": "msg", + "to": "$join([\"/home/pi/device-backend/default-configs/\", $substringAfter(msg.payload, \"PlanktoScope \"), \".hardware.json\"])", + "tot": "jsonata" + } + ], + "action": "", + "property": "", + "from": "", + "to": "", + "reg": false, + "x": 230, + "y": 240, + "wires": [ + [ + "e3ba6ac89221b17b" + ] + ] + }, + { + "id": "e3ba6ac89221b17b", + "type": "exec", + "z": "1eaf21c8.f7a21e", + "command": "cp", + "addpay": "payload", + "append": 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