rosalind.config

params {
    config_profile_description = 'Kings College London Rosalind HPC'
    config_profile_contact     = 'Theo Portlock'
    config_profile_url         = 'https://www.rosalind.kcl.ac.uk/'
}

singularity {
    enabled        = true
    autoMounts     = true
    docker.enabled = false
}

params {
    max_memory                   = 64.GB
    max_cpus                     = 16
    max_time                     = 24.h
    partition                    = 'shared'
    schema_ignore_params         = 'partition,genomes,modules'
    validationSchemaIgnoreParams = "partition,genomes,modules,schema_ignore_params"
}

process {
    resourceLimits = [
        memory: 64.GB,
        cpus: 16,
        time: 24.h
    ]
    executor       = 'slurm'
    maxRetries     = 3
    clusterOptions = { "--partition=${params.partition}" }
}

executor {
    submitRateLimit = '1 sec'
}