pom.xml

<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0"
	xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
	xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
	<modelVersion>4.0.0</modelVersion>

	<groupId>org.publichealthbioinformatics</groupId>
	<artifactId>irida-plugin-species-abundance</artifactId>
	<version>0.2.0</version>

	<!-- Please fill out these properties with information about your particular plugin -->
	<properties>
		<!-- Information used to define properties about a plugin. Please see the PF4J docs for more details https://pf4j.org/doc/getting-started.html -->
		<plugin.id>species-abundance</plugin.id>
		<plugin.class>org.publichealthbioinformatics.irida.plugin.speciesabundance.SpeciesAbundancePlugin</plugin.class>
		<plugin.version>0.2.0</plugin.version>
		<plugin.provider>Dan Fornika</plugin.provider>
		<plugin.dependencies></plugin.dependencies>
		<plugin.requires.runtime>1.1.0</plugin.requires.runtime>

		<!-- The version of IRIDA your plugin must be compiled against. -->
		<irida.version.compiletime>21.01</irida.version.compiletime>
		
		<!-- Dependency Versions -->
		<pf4j.version>2.4.0</pf4j.version>
		<junit.version>4.13.1</junit.version>
		<mockito.version>1.10.19</mockito.version>
		<hamcrest.version>1.3</hamcrest.version>

		<!-- Version of Java to target for this plugin -->
		<java.version>11</java.version>
		<maven.compiler.release>11</maven.compiler.release>

		<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
	</properties>

	<!-- Dependencies used to build this plugin package -->
	<dependencies>
		<dependency>
			<groupId>ca.corefacility.bioinformatics</groupId>
			<artifactId>irida</artifactId>
			<version>${irida.version.compiletime}</version>
			<classifier>classes</classifier>
			<scope>provided</scope>
		</dependency>

		<dependency>
			<groupId>org.pf4j</groupId>
			<artifactId>pf4j</artifactId>
			<version>${pf4j.version}</version>
			<scope>provided</scope>
		</dependency>

		<dependency>
			<groupId>junit</groupId>
			<artifactId>junit</artifactId>
			<version>${junit.version}</version>
			<scope>test</scope>
			<exclusions>
				<exclusion>
					<groupId>org.hamcrest</groupId>
					<artifactId>hamcrest-core</artifactId>
				</exclusion>
			</exclusions>
		</dependency>

        <dependency>
            <groupId>org.mockito</groupId>
            <artifactId>mockito-core</artifactId>
            <version>${mockito.version}</version>
            <scope>test</scope>
            <exclusions>
                <exclusion>
                    <artifactId>hamcrest-core</artifactId>
                    <groupId>org.hamcrest</groupId>
                </exclusion>
            </exclusions>
        </dependency>

        <dependency>
            <groupId>org.hamcrest</groupId>
            <artifactId>hamcrest-all</artifactId>
            <version>${hamcrest.version}</version>
            <scope>test</scope>
        </dependency>
	</dependencies>

	<!-- You should normally not have to modify any of the below information -->
	<build>
		<plugins>
			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-compiler-plugin</artifactId>
				<version>3.1</version>
				<configuration>
					<source>${java.version}</source>
					<target>${java.version}</target>
					<forceJavacCompilerUse>true</forceJavacCompilerUse>
				</configuration>
			</plugin>

			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-jar-plugin</artifactId>
				<version>3.1.1</version>

				<configuration>
					<archive>
						<manifestEntries>
							<Plugin-Class>${plugin.class}</Plugin-Class>
							<Plugin-Dependencies>${plugin.dependencies}</Plugin-Dependencies>
							<Plugin-Id>${plugin.id}</Plugin-Id>
							<Plugin-Provider>${plugin.provider}</Plugin-Provider>
							<Plugin-Version>${plugin.version}</Plugin-Version>
							<Plugin-Requires>${plugin.requires.runtime}</Plugin-Requires>
						</manifestEntries>
					</archive>
				</configuration>
			</plugin>
		</plugins>
	</build>
</project>