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NCBIProteinToPyeeddoes not extract locus_tag from entry #102

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haeussma opened this issue Nov 10, 2024 · 0 comments · Fixed by #96
Open

NCBIProteinToPyeeddoes not extract locus_tag from entry #102

haeussma opened this issue Nov 10, 2024 · 0 comments · Fixed by #96

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@haeussma
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Currently, the NCBIProteinToPyeed does not extract the locus_tag from the "CDS" in the "FEATURES" section of the entry. The locus tag information is necessary to identify which part of the DNA entry codes is responsible for the protein.

In a subsequent step, the nucleotide_id, together with the locus_tag attribute of a Protein, can be used directly to fetch the corresponding DNA sequence of a protein. In that process, the (DNA)-(ENCODE)-(Protein) edge can be created with the information from the DNA entry.

@haeussma haeussma linked a pull request Nov 10, 2024 that will close this issue
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