From 1b48c3e3c3a318aa11b6c981f73c52b3377d5252 Mon Sep 17 00:00:00 2001
From: Haley Hunter-Zinck <haley.hunterzinck@sagebase.org>
Date: Fri, 28 Jan 2022 18:23:38 -0800
Subject: [PATCH 1/2] add bladder class

---
 geniesp/__main__.py   |  3 ++-
 geniesp/bpc_config.py | 19 +++++++++++++++++++
 2 files changed, 21 insertions(+), 1 deletion(-)

diff --git a/geniesp/__main__.py b/geniesp/__main__.py
index fbb54bb..55d486e 100644
--- a/geniesp/__main__.py
+++ b/geniesp/__main__.py
@@ -3,7 +3,7 @@
 
 import synapseclient
 
-from .bpc_config import Brca, Crc, Nsclc, Panc, Prostate
+from .bpc_config import Brca, Crc, Nsclc, Panc, Prostate, Bladder
 from .sp_config import Akt1, Erbb2, Fgfr4
 
 BPC_MAPPING = {
@@ -12,6 +12,7 @@
     "BrCa": Brca,
     "PANC": Panc,
     "Prostate": Prostate,
+    "BLADDER": Bladder,
     "AKT1": Akt1,
     "ERRB2": Erbb2,
     "FGFR4": Fgfr4,
diff --git a/geniesp/bpc_config.py b/geniesp/bpc_config.py
index 0ddfcf3..5cfb133 100644
--- a/geniesp/bpc_config.py
+++ b/geniesp/bpc_config.py
@@ -105,3 +105,22 @@ class Prostate(BpcProjectRunner):
         # "tree/a672a70ad5195e6e8359325f5cea10bef384b2ff/"
         # "geniesp/bpc_config.py"
     )
+
+class Bladder(BpcProjectRunner):
+    """NSCLC BPC sponsored project"""
+
+    # Sponsorted project name
+    _SPONSORED_PROJECT = "BLADDER"
+    # Redcap codes to cbioportal mapping synid and form key is in
+    _REDCAP_TO_CBIOMAPPING_SYNID = "syn25712693.14"
+    # Mapping from Synapse Table to form (derived files)
+    _DATA_TABLE_IDS = "syn22296821"
+    # Storage of not found samples
+    _SP_REDCAP_EXPORTS_SYNID = "syn21446571"
+    # Run `git rev-parse HEAD` in Genie_processing directory to
+    # obtain shadigest
+    _GITHUB_REPO = (
+        "https://github.com/Sage-Bionetworks/GENIE-Sponsored-Projects/"
+        # "tree/a672a70ad5195e6e8359325f5cea10bef384b2ff/"
+        # "geniesp/bpc_config.py"
+    )
\ No newline at end of file

From 00fa388613324612b46c96711b227776400ea2f6 Mon Sep 17 00:00:00 2001
From: hhunterzinck <haley.hunterzinck@sagebase.org>
Date: Sat, 29 Jan 2022 02:45:37 +0000
Subject: [PATCH 2/2] add newline

---
 geniesp/bpc_config.py | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/geniesp/bpc_config.py b/geniesp/bpc_config.py
index 5cfb133..932bdfb 100644
--- a/geniesp/bpc_config.py
+++ b/geniesp/bpc_config.py
@@ -123,4 +123,5 @@ class Bladder(BpcProjectRunner):
         "https://github.com/Sage-Bionetworks/GENIE-Sponsored-Projects/"
         # "tree/a672a70ad5195e6e8359325f5cea10bef384b2ff/"
         # "geniesp/bpc_config.py"
-    )
\ No newline at end of file
+    )
+