VCF headers: Invalid tag name

[lgmgeo]

Hi,

@gevro has reported a bug here: lgmgeo/AnnotSV#245
Can you have a look at it?

The final vcf is giving me these errors when I look at it with bcftools:

[W::bcf_hrec_check] Invalid tag name: "'SampleID'"
[W::bcf_hrec_check] Invalid tag name: "Compound_htz(sample)"
[W::bcf_hrec_check] Invalid tag name: "Count_hom(sample)"
[W::bcf_hrec_check] Invalid tag name: "Count_htz(sample)"
[W::bcf_hrec_check] Invalid tag name: "Count_htz/allHom(sample)"
[W::bcf_hrec_check] Invalid tag name: "Count_htz/total(cohort)"
[W::bcf_hrec_check] Invalid tag name: "Count_total(cohort)"
##fileformat=VCFv4.2
[W::vcf_parse_format] FORMAT 'AD' at 1:90258 is not defined in the header, assuming Type=String
[W::vcf_parse_format] FORMAT 'DP' at 1:90258 is not defined in the header, assuming Type=String
[W::vcf_parse_format] FORMAT 'PS' at 1:136554 is not defined in the header, assuming Type=String

Thanks,

Véronique