You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
The shaded area in the cladogram has been shifted to the right side. I have ran the same data in the legacy website of galaxy which visualized the cladogram correctly. But this new biobakery site of LEfSe is shifting the shaded area of taxa to the right side automatically.
Then I run LEfSe with the command line after correcting “lefse_plot_cladogram.py” line 270
ax.bar(fr_0, clto, width = fr_1-fr_0, bottom = float(l-1)/float(de), alpha = params[‘alpha’], color=col, edgecolor=col)
to
ax.bar(fr_0, clto, width = fr_1-fr_0, bottom = float(l-1)/float(de), align=‘edge’, alpha = params[‘alpha’], color=col, edgecolor=col)
The shaded area showed in the right place. I think this will be helpful for everyone if you could correct this “lefse_plot_cladogram.py” line 270 in the BIOBAKERY website.
Images are added for the references.
The text was updated successfully, but these errors were encountered:
The shaded area in the cladogram has been shifted to the right side. I have ran the same data in the legacy website of galaxy which visualized the cladogram correctly. But this new biobakery site of LEfSe is shifting the shaded area of taxa to the right side automatically.
Then I run LEfSe with the command line after correcting “lefse_plot_cladogram.py” line 270
ax.bar(fr_0, clto, width = fr_1-fr_0, bottom = float(l-1)/float(de), alpha = params[‘alpha’], color=col, edgecolor=col)
to
ax.bar(fr_0, clto, width = fr_1-fr_0, bottom = float(l-1)/float(de), align=‘edge’, alpha = params[‘alpha’], color=col, edgecolor=col)
The shaded area showed in the right place. I think this will be helpful for everyone if you could correct this “lefse_plot_cladogram.py” line 270 in the BIOBAKERY website.
Images are added for the references.
The text was updated successfully, but these errors were encountered: