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Memory limit during sdm.spatialdm_local #32

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Jiayi-Zheng opened this issue Sep 7, 2024 · 1 comment
Open

Memory limit during sdm.spatialdm_local #32

Jiayi-Zheng opened this issue Sep 7, 2024 · 1 comment

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@Jiayi-Zheng
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Hello, I'm using stereo-seq with lower bin size, and so I've got a few ten thousands of pixels, when I try to run spatialdm_local it tells me my memory is not enough. I want to ask if I can reduce the n_permutation to save memory? What would be an ok level of n_perm if I don't set it to 1000? How would that affect my result? Also, if there any other ways to get around this memory limit...?

Thank you!

@huangyh09
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Thanks Joy for raising the issue. @jackywangtj66 is working on more tutorials with the z-score and API functions for both the spatial weight matrix and Moran's R. Please keep tuned.

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