diff --git a/app/Console/Commands/GenerateHeatMapData.php b/app/Console/Commands/GenerateHeatMapData.php
index 3bd471f..0de32ad 100644
--- a/app/Console/Commands/GenerateHeatMapData.php
+++ b/app/Console/Commands/GenerateHeatMapData.php
@@ -22,7 +22,7 @@ public function handle()
$molecule_identifiers = array_map(function ($item) {
return preg_replace('/^CNP/i', '', $item);
}, $molecule_identifiers);
- $heat_map_data['ids'][$collection->id . '|' . $collection->title] = $molecule_identifiers;
+ $heat_map_data['ids'][$collection->id.'|'.$collection->title] = $molecule_identifiers;
}
// Calculate percentage overlaps -> ol_d = overlap data
@@ -42,24 +42,31 @@ public function handle()
$intersection = array_intersect($set1, $set2);
$intersection_count = count($intersection);
- // Calculate percentage overlap
- if ($set1_count > 0 && $set2_count > 0) {
- // Using Jaccard similarity: intersection size / union size
- $union_count = $set1_count + $set2_count - $intersection_count;
- $overlap_percentage = ($intersection_count / $union_count) * 100;
- } else {
- $overlap_percentage = 0;
- }
+ // Calculate directional overlap percentages
+ // What percentage of collection1's molecules are in collection2
+ $c1_in_c2_percentage = ($set1_count > 0)
+ ? ($intersection_count / $set1_count) * 100
+ : 0;
+
+ // What percentage of collection2's molecules are in collection1
+ $c2_in_c1_percentage = ($set2_count > 0)
+ ? ($intersection_count / $set2_count) * 100
+ : 0;
+
+ // For the main heatmap data, use the larger percentage
+ // This shows the stronger relationship between the collections
+ $overlap_percentage = max($c1_in_c2_percentage, $c2_in_c1_percentage);
$heat_map_data['ol_d'][$collection1_key][$collection2_key] = round($overlap_percentage, 2);
// Add additional overlap statistics -> ol_s = overlap_stats
$heat_map_data['ol_s'][$collection1_key][$collection2_key] = [
- // ol = overlap count
'ol' => $intersection_count,
'c1_count' => $set1_count,
'c2_count' => $set2_count,
'p' => round($overlap_percentage, 2),
+ 'c1_in_c2_p' => round($c1_in_c2_percentage, 2), // Percentage of collection1 contained in collection2
+ 'c2_in_c1_p' => round($c2_in_c1_percentage, 2), // Percentage of collection2 contained in collection1
];
}
}
diff --git a/app/Livewire/CollectionOverlap.php b/app/Livewire/CollectionOverlap.php
index 2e115c6..9c363c2 100644
--- a/app/Livewire/CollectionOverlap.php
+++ b/app/Livewire/CollectionOverlap.php
@@ -24,8 +24,8 @@ public function mount()
}
// Store in the public property
- $this->collections = $decodedData['ol_d'];
-
+ $this->collections = $decodedData;
+
}
public function render()
diff --git a/public/reports/heat_map_metadata.json b/public/reports/heat_map_metadata.json
index dfb5cf5..b7e5ddb 100644
--- a/public/reports/heat_map_metadata.json
+++ b/public/reports/heat_map_metadata.json
@@ -1 +1 @@
-{"ol_d":{"10|ChemSpider NPs":{"10|ChemSpider NPs":100,"28|NCI DTP data":0.55,"16|GNPS (Global Natural Products Social Molecular Networking)":2.2,"20|InflamNat":0.62,"37|PubChem NPs":1.38,"24|Lichen Database":0.01,"27|NANPDB (Natural Products from Northern African Sources)":1.9,"23|KNApSaCK":3.05,"47|TIPdb (database of Taiwan indigenous plants)":2.33,"52|ZINC NP":0.85,"31|NPAtlas":3.26,"57|ANPDB":1.91,"59|Piel Lab DB":0.02,"35|p-ANAPL":0.54,"1|AfroCancer":0.32,"2|AfroDB":0.63,"5|BIOFACQUIM":0.55,"40|Seaweed Metabolite Database (SWMD)":0.24,"39|SANCDB":7.51,"17|HIM (Herbal Ingredients in-vivo Metabolism database)":1.25,"38|ReSpect":1.24,"36|Phenol-explorer":3.91,"43|StreptomeDB":21.77,"45|TCMDB@Taiwan (Traditional Chinese Medicine database)":0.91,"3|AfroMalariaDB":0.32,"58|Phyto4Health":3.06,"7|Carotenoids Database":12.07,"51|VietHerb":3.17,"19|Indofine Chemical Company":0.08,"21|InPACdb":0.36,"26|Mitishamba database":0.66,"8|ChEBI NPs":3.73,"34|NuBBEDB":5.67,"6|BitterDB":0.67,"18|HIT 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UEFS)":{"ol":3,"c1_count":202118,"c2_count":814,"p":0.37,"c1_in_c2_p":0,"c2_in_c1_p":0.37},"53|CyanoMetNP":{"ol":118,"c1_count":202118,"c2_count":3735,"p":3.16,"c1_in_c2_p":0.06,"c2_in_c1_p":3.16},"54|DrugBankNP":{"ol":579,"c1_count":202118,"c2_count":13571,"p":4.27,"c1_in_c2_p":0.29,"c2_in_c1_p":4.27},"56|EMNPD":{"ol":415,"c1_count":202118,"c2_count":8808,"p":4.71,"c1_in_c2_p":0.21,"c2_in_c1_p":4.71},"14|Exposome-explorer":{"ol":69,"c1_count":202118,"c2_count":580,"p":11.9,"c1_in_c2_p":0.03,"c2_in_c1_p":11.9},"62|CMNPD":{"ol":912,"c1_count":202118,"c2_count":51969,"p":1.75,"c1_in_c2_p":0.45,"c2_in_c1_p":1.75},"63|Supernatural3":{"ol":202118,"c1_count":202118,"c2_count":202118,"p":100,"c1_in_c2_p":100,"c2_in_c1_p":100}}}}
\ No newline at end of file
diff --git a/resources/views/livewire/collection-overlap.blade.php b/resources/views/livewire/collection-overlap.blade.php
index e675276..c9ff8f6 100644
--- a/resources/views/livewire/collection-overlap.blade.php
+++ b/resources/views/livewire/collection-overlap.blade.php
@@ -1,5 +1,5 @@
-
+
Collection Overlap Heatmap
@@ -7,182 +7,180 @@
\ No newline at end of file
+
+ legend.append("rect")
+ .attr("width", legendWidth)
+ .attr("height", legendHeight)
+ .style("fill", "url(#heatmap-gradient)");
+
+ const legendScale = d3.scaleLinear()
+ .domain([0, 100])
+ .range([legendHeight, 0]);
+
+ const legendAxis = d3.axisRight(legendScale)
+ .ticks(5)
+ .tickFormat(d => d + "%");
+
+ legend.append("g")
+ .attr("transform", `translate(${legendWidth},0)`)
+ .call(legendAxis);
+
+ legend.append("text")
+ .attr("transform", "rotate(-90)")
+ .attr("x", -legendHeight / 2)
+ .attr("y", -30)
+ .attr("text-anchor", "middle")
+ .style("font-size", "12px")
+ .text("Overlap Percentage");
+}
+
+// Initialize the heatmap when the DOM is loaded
+document.addEventListener('DOMContentLoaded', initHeatmap);
+
+// Add resize handler
+window.addEventListener('resize', () => {
+ initHeatmap();
+});
\ No newline at end of file
diff --git a/resources/views/livewire/stats.blade.php b/resources/views/livewire/stats.blade.php
index 385fb92..110a963 100644
--- a/resources/views/livewire/stats.blade.php
+++ b/resources/views/livewire/stats.blade.php
@@ -113,8 +113,8 @@ class="pointer-events-none absolute inset-0 rounded-xl ring-1 ring-inset ring-gr
'chartData' => $chartData,
])
@endforeach
-
+
+
@livewire('collection-overlap')