Can I get the FASTQ files?

[wuliRothschild]

Dear author, I am very interested in your impressive work. I would like to ask how I can obtain the mouse raw FASTQ sequencing data that you uploaded in the data availability section? I tried to download them from ArrayExpress, but the webpage informed me that the raw data does not exist (https://www.ebi.ac.uk/ena/browser/view/ERR12724455). I would like to know how to correctly obtain them.

I would appreciate any meaningful help!
Jingyuan

[AlinaKurjan]

Jumping onto this, I am also struggling to download the FASTQ files for this work. I’ve managed to download half of the files (all that start with “WS_”), however for the remainder (e.g., those starting with ‘5386STDY’) it seems that the ftp links are broken as the folders they point towards no longer exist?

Data repository: https://www.ebi.ac.uk/biostudies/arrayexpress/studies/E-MTAB-13874
Example:
Let’s download sample 5386STDY7599664. Fastq link path for this sample: ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR127/ERR12724455/5386STDY7599664_S1_L001_I1_001.fastq.gz
But there is no ERR12724455 folder in the ERR127 folder.

Could you please help us figure out how to access those files or point towards the person capable of locating them?

Thank you very much for your excellent work and contributions!