diff --git a/Dockerfile b/Dockerfile index 5636ead..1a2543b 100644 --- a/Dockerfile +++ b/Dockerfile @@ -77,7 +77,8 @@ RUN tar xvzf trim_galore.tar.gz && mv TrimGalore-0.6.10/trim_galore /usr/bin #R dependencies RUN R -e "install.packages('BiocManager')" RUN R -e "BiocManager::install(c('GenomicAlignments', 'Biostrings', 'IRanges'))" -RUN R -e "install.packages(c('alakazam', 'ggplot2'), repos='http://cran.us.r-project.org')" +RUN R -e "install.packages(c('remotes', 'ggplot2'), repos='http://cran.us.r-project.org')" +RUN R -e "require(remotes);install_version('alakazam', version = '1.2.0', repos='http://cran.us.r-project.org')" #Bowtie 2 as needs version 2.5.1 due to a bug in 2.5.0