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module 'celltypist' has no attribute 'extract_top_markers' #140

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VittoriaDBocchi opened this issue Nov 15, 2024 · 2 comments
Open

module 'celltypist' has no attribute 'extract_top_markers' #140

VittoriaDBocchi opened this issue Nov 15, 2024 · 2 comments

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@VittoriaDBocchi
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Hi! Thanks for developing this incredible tool.

I tried to get the first set of genes that define a cell cluster in the model using top_3_genes = model.extract_top_markers("PIMN", 3) but I get this error AttributeError: 'Model' object has no attribute 'extract_top_markers'

Any idea why this is not working? could be version?

Thanks!

@ChuanXu1
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ChuanXu1 commented Dec 2, 2024

@VittoriaDBocchi, I think it's a version issue. The newest one is 1.6.3.

@VittoriaDBocchi
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Thanks! It works in the more recent version. Thanks again for your help

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