From feed64037da1977101b2f7b448ad7d26dd3d65a4 Mon Sep 17 00:00:00 2001 From: amrit110 Date: Thu, 23 Nov 2023 22:42:56 -0500 Subject: [PATCH] deploy: 56b1b3dbe35c01d39493b2d31499d636ceb1db7c --- _modules/cycquery/interface.html | 5 + .../cycquery.base.DatasetQuerier.html | 24 ++-- .../cycquery.eicu.EICUQuerier.html | 12 +- .../cycquery.gemini.GEMINIQuerier.html | 12 +- .../cycquery.interface.QueryInterface.html | 45 ++++---- .../cycquery.mimiciii.MIMICIIIQuerier.html | 12 +- .../cycquery.mimiciv.MIMICIVQuerier.html | 12 +- .../cycquery.omop.OMOPQuerier.html | 18 +-- .../_autosummary/cycquery.ops.AddColumn.html | 10 +- .../cycquery.ops.AddDeltaColumn.html | 10 +- .../cycquery.ops.AddDeltaConstant.html | 8 +- .../_autosummary/cycquery.ops.AddNumeric.html | 8 +- .../api/_autosummary/cycquery.ops.And.html | 4 +- .../api/_autosummary/cycquery.ops.Apply.html | 8 +- .../api/_autosummary/cycquery.ops.Cast.html | 4 +- .../cycquery.ops.ConditionAfterDate.html | 10 +- .../cycquery.ops.ConditionBeforeDate.html | 10 +- .../cycquery.ops.ConditionEndsWith.html | 12 +- .../cycquery.ops.ConditionEquals.html | 12 +- .../cycquery.ops.ConditionGreaterThan.html | 14 +-- .../cycquery.ops.ConditionIn.html | 12 +- .../cycquery.ops.ConditionInMonths.html | 10 +- .../cycquery.ops.ConditionInYears.html | 10 +- .../cycquery.ops.ConditionLessThan.html | 14 +-- .../cycquery.ops.ConditionLike.html | 10 +- .../cycquery.ops.ConditionRegexMatch.html | 10 +- .../cycquery.ops.ConditionStartsWith.html | 6 +- .../cycquery.ops.ConditionSubstring.html | 12 +- .../api/_autosummary/cycquery.ops.Count.html | 4 +- .../_autosummary/cycquery.ops.Distinct.html | 4 +- .../api/_autosummary/cycquery.ops.Drop.html | 4 +- .../_autosummary/cycquery.ops.DropEmpty.html | 4 +- .../_autosummary/cycquery.ops.DropNulls.html | 4 +- ...ycquery.ops.ExtractTimestampComponent.html | 8 +- .../_autosummary/cycquery.ops.FillNull.html | 8 +- .../cycquery.ops.GroupByAggregate.html | 8 +- .../api/_autosummary/cycquery.ops.Join.html | 16 +-- .../api/_autosummary/cycquery.ops.Keep.html | 4 +- .../api/_autosummary/cycquery.ops.Limit.html | 4 +- .../_autosummary/cycquery.ops.Literal.html | 6 +- .../api/_autosummary/cycquery.ops.Or.html | 6 +- .../_autosummary/cycquery.ops.OrderBy.html | 6 +- .../_autosummary/cycquery.ops.QueryOp.html | 2 +- .../cycquery.ops.RandomizeOrder.html | 2 +- .../api/_autosummary/cycquery.ops.Rename.html | 6 +- .../_autosummary/cycquery.ops.Reorder.html | 4 +- .../cycquery.ops.ReorderAfter.html | 6 +- .../_autosummary/cycquery.ops.Sequential.html | 14 +-- .../_autosummary/cycquery.ops.Substring.html | 8 +- .../api/_autosummary/cycquery.ops.Trim.html | 6 +- .../api/_autosummary/cycquery.ops.Union.html | 6 +- searchindex.js | 2 +- tutorials/eicu.html | 18 +-- tutorials/eicu.ipynb | 58 +++++----- tutorials/mimiciii.html | 18 +-- tutorials/mimiciii.ipynb | 58 +++++----- tutorials/mimiciv.html | 34 +++--- tutorials/mimiciv.ipynb | 106 +++++++++--------- tutorials/omop.html | 22 ++-- tutorials/omop.ipynb | 78 ++++++------- 60 files changed, 437 insertions(+), 431 deletions(-) diff --git a/_modules/cycquery/interface.html b/_modules/cycquery/interface.html index 7607955..88684b5 100644 --- a/_modules/cycquery/interface.html +++ b/_modules/cycquery/interface.html @@ -363,6 +363,7 @@

Source code for cycquery.interface

         index_col: Optional[str] = None,
         batch_mode: bool = False,
         batch_size: int = 1000000,
+        dtype_backend: str = "pyarrow",
     ) -> Union[pd.DataFrame, Generator[pd.DataFrame, None, None]]:
         """Run the query, and fetch data.
 
@@ -379,6 +380,8 @@ 
Source code for cycquery.interface
             Whether to run the query in batch mode. A generator is returned if True.
         batch_size
             Batch size for the query, default 1 million rows.
+        dtype_backend
+            Data type to use for the backend, default pyarrow.
 
         Returns
         -------
@@ -391,12 +394,14 @@ 
Source code for cycquery.interface
                 self.query,
                 limit=limit,
                 index_col=index_col,
+                dtype_backend=dtype_backend,
             )
         else:
             self._data = self.database.run_query_batch(
                 self.query,
                 index_col=index_col,
                 batch_size=batch_size,
+                dtype_backend=dtype_backend,
             )
 
         return self._data

diff --git a/reference/api/_autosummary/cycquery.base.DatasetQuerier.html b/reference/api/_autosummary/cycquery.base.DatasetQuerier.html
index 86d89b9..706b82e 100644
--- a/reference/api/_autosummary/cycquery.base.DatasetQuerier.html
+++ b/reference/api/_autosummary/cycquery.base.DatasetQuerier.html
@@ -199,12 +199,12 @@ 
cycquery.base.DatasetQuerier
 
Parameters:

 
    
-
  • database (str) – Name of database.
    • 
-
  • user (str) – Username for database.
    • 
-
  • password (str) – Password for database.
    • 
-
  • dbms (str) – Database management system.
    • 
-
  • host (str) – Hostname of database.
    • 
-
  • port (int) – Port of database.
    • 
+
  • database (str) – Name of database.
    • 
+
  • user (str) – Username for database.
    • 
+
  • password (str) – Password for database.
    • 
+
  • dbms (str) – Database management system.
    • 
+
  • host (str) – Hostname of database.
    • 
+
  • port (int) – Port of database.
    • 
 

 

 
@@ -244,9 +244,9 @@ 
cycquery.base.DatasetQuerier
 
Parameters:

 
    
-
  • schema_name (str) – Name of schema in the database.
    • 
-
  • table_name (str) – Name of table in the database.
    • 
-
  • cast_timestamp_cols (bool) – Whether to cast timestamp columns to datetime.
    • 
+
  • schema_name (str) – Name of schema in the database.
    • 
+
  • table_name (str) – Name of table in the database.
    • 
+
  • cast_timestamp_cols (bool) – Whether to cast timestamp columns to datetime.
    • 
 

 

 
Returns:

@@ -265,8 +265,8 @@ 
cycquery.base.DatasetQuerier
 
Parameters:

 
    
-
  • schema_name (str) – Name of schema in the database.
    • 
-
  • table_name (str) – Name of table in the database.
    • 
+
  • schema_name (str) – Name of schema in the database.
    • 
+
  • table_name (str) – Name of table in the database.
    • 
 

 

 
Returns:

@@ -312,7 +312,7 @@ 
cycquery.base.DatasetQuerier
 
Parameters:

-
schema_name (Optional[str]) – Name of schema in the database.

+
schema_name (Optional[str]) – Name of schema in the database.

 

 
Returns:

 
List of table names.

diff --git a/reference/api/_autosummary/cycquery.eicu.EICUQuerier.html b/reference/api/_autosummary/cycquery.eicu.EICUQuerier.html
index 4e76005..44459d3 100644
--- a/reference/api/_autosummary/cycquery.eicu.EICUQuerier.html
+++ b/reference/api/_autosummary/cycquery.eicu.EICUQuerier.html
@@ -223,9 +223,9 @@ 
cycquery.eicu.EICUQuerier
 
Parameters:

 
    
-
  • schema_name (str) – Name of schema in the database.
    • 
-
  • table_name (str) – Name of table in the database.
    • 
-
  • cast_timestamp_cols (bool) – Whether to cast timestamp columns to datetime.
    • 
+
  • schema_name (str) – Name of schema in the database.
    • 
+
  • table_name (str) – Name of table in the database.
    • 
+
  • cast_timestamp_cols (bool) – Whether to cast timestamp columns to datetime.
    • 
 

 

 
Returns:

@@ -244,8 +244,8 @@ 
cycquery.eicu.EICUQuerier
 
Parameters:

 
    
-
  • schema_name (str) – Name of schema in the database.
    • 
-
  • table_name (str) – Name of table in the database.
    • 
+
  • schema_name (str) – Name of schema in the database.
    • 
+
  • table_name (str) – Name of table in the database.
    • 
 

 

 
Returns:

@@ -291,7 +291,7 @@ 
cycquery.eicu.EICUQuerier
 
Parameters:

-
schema_name (Optional[str]) – Name of schema in the database.

+
schema_name (Optional[str]) – Name of schema in the database.

 

 
Returns:

 
List of table names.

diff --git a/reference/api/_autosummary/cycquery.gemini.GEMINIQuerier.html b/reference/api/_autosummary/cycquery.gemini.GEMINIQuerier.html
index ee2d358..aef048c 100644
--- a/reference/api/_autosummary/cycquery.gemini.GEMINIQuerier.html
+++ b/reference/api/_autosummary/cycquery.gemini.GEMINIQuerier.html
@@ -265,9 +265,9 @@ 
cycquery.gemini.GEMINIQuerier
 
Parameters:

 
    
-
  • schema_name (str) – Name of schema in the database.
    • 
-
  • table_name (str) – Name of table in the database.
    • 
-
  • cast_timestamp_cols (bool) – Whether to cast timestamp columns to datetime.
    • 
+
  • schema_name (str) – Name of schema in the database.
    • 
+
  • table_name (str) – Name of table in the database.
    • 
+
  • cast_timestamp_cols (bool) – Whether to cast timestamp columns to datetime.
    • 
 

 

 
Returns:

@@ -314,8 +314,8 @@ 
cycquery.gemini.GEMINIQuerier
 
Parameters:

 
    
-
  • schema_name (str) – Name of schema in the database.
    • 
-
  • table_name (str) – Name of table in the database.
    • 
+
  • schema_name (str) – Name of schema in the database.
    • 
+
  • table_name (str) – Name of table in the database.
    • 
 

 

 
Returns:

@@ -361,7 +361,7 @@ 
cycquery.gemini.GEMINIQuerier
 
Parameters:

-
schema_name (Optional[str]) – Name of schema in the database.

+
schema_name (Optional[str]) – Name of schema in the database.

 

 
Returns:

 
List of table names.

diff --git a/reference/api/_autosummary/cycquery.interface.QueryInterface.html b/reference/api/_autosummary/cycquery.interface.QueryInterface.html
index b46f735..b0f79ff 100644
--- a/reference/api/_autosummary/cycquery.interface.QueryInterface.html
+++ b/reference/api/_autosummary/cycquery.interface.QueryInterface.html
@@ -193,8 +193,8 @@ 
cycquery.interface.QueryInterface
 
Parameters:

 

 

 
@@ -246,14 +246,14 @@ 
cycquery.interface.QueryInterface
 
Return type:

-
None

+
None

 

 
 

 
 

 

-property data: DataFrame | None

+property data: DataFrame | None
 
Get data.

 

 
@@ -264,13 +264,13 @@ 
cycquery.interface.QueryInterface
 
Parameters:

 

 

 
Returns:

@@ -288,7 +288,7 @@ 
cycquery.interface.QueryInterface
 
Parameters:

-
ops (Union[QueryOp, Sequential]) – Operations to perform on the query.

+
ops (Union[QueryOp, Sequential]) – Operations to perform on the query.

 

 
Returns:

 
QueryInterface object with the operations added.

@@ -301,24 +301,25 @@ 
cycquery.interface.QueryInterface
 

-run(limit=None, index_col=None, batch_mode=False, batch_size=1000000)[source]

+run(limit=None, index_col=None, batch_mode=False, batch_size=1000000, dtype_backend='pyarrow')[source]
 
Run the query, and fetch data.

 

 
Parameters:

 
    
-
  • limit (Optional[int]) – No. of rows to limit the query return.
    • 
+
  • limit (Optional[int]) – No. of rows to limit the query return.
    • 
 
  • backend – Backend computing framework to use, pandas or dask or datasets.
    • 
-
  • index_col (Optional[str]) – Column which becomes the index, and defines the partitioning.
+
  • index_col (Optional[str]) – Column which becomes the index, and defines the partitioning.
 Should be a indexed column in the SQL server, and any orderable type.
    • 
-
  • batch_mode (bool) – Whether to run the query in batch mode. A generator is returned if True.
    • 
-
  • batch_size (int) – Batch size for the query, default 1 million rows.
    • 
+
  • batch_mode (bool) – Whether to run the query in batch mode. A generator is returned if True.
    • 
+
  • batch_size (int) – Batch size for the query, default 1 million rows.
    • 
+
  • dtype_backend (str) – Data type to use for the backend, default pyarrow.
    • 
 

 

 
Returns:

 
Query result.

 

 
Return type:

-
pandas.DataFrame or Generator[pandas.DataFrame, None, None]

+
pandas.DataFrame or Generator[pandas.DataFrame, None, None]

 

 

 

@@ -330,8 +331,8 @@ 
cycquery.interface.QueryInterface
 
Parameters:

 
    
-
  • path (str) – Path where the file will be saved.
    • 
-
  • file_format (Literal['parquet', 'csv']) – File format of the file to save.
    • 
+
  • path (str) – Path where the file will be saved.
    • 
+
  • file_format (Literal['parquet', 'csv']) – File format of the file to save.
    • 
 

 

 
Returns:

@@ -349,7 +350,7 @@ 
cycquery.interface.QueryInterface
 
Parameters:

-
other (QueryInterface) – The other query to union with.

+
other (QueryInterface) – The other query to union with.

 

 
Returns:

 
QueryInterface object with the union operation added.

@@ -366,7 +367,7 @@ 
cycquery.interface.QueryInterface
 
Parameters:

-
other (QueryInterface) – The other query to union all with.

+
other (QueryInterface) – The other query to union all with.

 

 
Returns:

 
QueryInterface object with the union all operation added.

diff --git a/reference/api/_autosummary/cycquery.mimiciii.MIMICIIIQuerier.html b/reference/api/_autosummary/cycquery.mimiciii.MIMICIIIQuerier.html
index 680529e..573c166 100644
--- a/reference/api/_autosummary/cycquery.mimiciii.MIMICIIIQuerier.html
+++ b/reference/api/_autosummary/cycquery.mimiciii.MIMICIIIQuerier.html
@@ -260,9 +260,9 @@ 
cycquery.mimiciii.MIMICIIIQuerier
 
Parameters:

 
    
-
  • schema_name (str) – Name of schema in the database.
    • 
-
  • table_name (str) – Name of table in the database.
    • 
-
  • cast_timestamp_cols (bool) – Whether to cast timestamp columns to datetime.
    • 
+
  • schema_name (str) – Name of schema in the database.
    • 
+
  • table_name (str) – Name of table in the database.
    • 
+
  • cast_timestamp_cols (bool) – Whether to cast timestamp columns to datetime.
    • 
 

 

 
Returns:

@@ -295,8 +295,8 @@ 
cycquery.mimiciii.MIMICIIIQuerier
 
Parameters:

 
    
-
  • schema_name (str) – Name of schema in the database.
    • 
-
  • table_name (str) – Name of table in the database.
    • 
+
  • schema_name (str) – Name of schema in the database.
    • 
+
  • table_name (str) – Name of table in the database.
    • 
 

 

 
Returns:

@@ -342,7 +342,7 @@ 
cycquery.mimiciii.MIMICIIIQuerier
 
Parameters:

-
schema_name (Optional[str]) – Name of schema in the database.

+
schema_name (Optional[str]) – Name of schema in the database.

 

 
Returns:

 
List of table names.

diff --git a/reference/api/_autosummary/cycquery.mimiciv.MIMICIVQuerier.html b/reference/api/_autosummary/cycquery.mimiciv.MIMICIVQuerier.html
index 8ff2624..a9bd921 100644
--- a/reference/api/_autosummary/cycquery.mimiciv.MIMICIVQuerier.html
+++ b/reference/api/_autosummary/cycquery.mimiciv.MIMICIVQuerier.html
@@ -269,9 +269,9 @@ 
cycquery.mimiciv.MIMICIVQuerier
 
Parameters:

 
    
-
  • schema_name (str) – Name of schema in the database.
    • 
-
  • table_name (str) – Name of table in the database.
    • 
-
  • cast_timestamp_cols (bool) – Whether to cast timestamp columns to datetime.
    • 
+
  • schema_name (str) – Name of schema in the database.
    • 
+
  • table_name (str) – Name of table in the database.
    • 
+
  • cast_timestamp_cols (bool) – Whether to cast timestamp columns to datetime.
    • 
 

 

 
Returns:

@@ -304,8 +304,8 @@ 
cycquery.mimiciv.MIMICIVQuerier
 
Parameters:

 
    
-
  • schema_name (str) – Name of schema in the database.
    • 
-
  • table_name (str) – Name of table in the database.
    • 
+
  • schema_name (str) – Name of schema in the database.
    • 
+
  • table_name (str) – Name of table in the database.
    • 
 

 

 
Returns:

@@ -351,7 +351,7 @@ 
cycquery.mimiciv.MIMICIVQuerier
 
Parameters:

-
schema_name (Optional[str]) – Name of schema in the database.

+
schema_name (Optional[str]) – Name of schema in the database.

 

 
Returns:

 
List of table names.

diff --git a/reference/api/_autosummary/cycquery.omop.OMOPQuerier.html b/reference/api/_autosummary/cycquery.omop.OMOPQuerier.html
index 36beba2..9ea4da0 100644
--- a/reference/api/_autosummary/cycquery.omop.OMOPQuerier.html
+++ b/reference/api/_autosummary/cycquery.omop.OMOPQuerier.html
@@ -241,9 +241,9 @@ 
cycquery.omop.OMOPQuerier
 
Parameters:

 
    
-
  • schema_name (str) – Name of schema in the database.
    • 
-
  • table_name (str) – Name of table in the database.
    • 
-
  • cast_timestamp_cols (bool) – Whether to cast timestamp columns to datetime.
    • 
+
  • schema_name (str) – Name of schema in the database.
    • 
+
  • table_name (str) – Name of table in the database.
    • 
+
  • cast_timestamp_cols (bool) – Whether to cast timestamp columns to datetime.
    • 
 

 

 
Returns:

@@ -262,8 +262,8 @@ 
cycquery.omop.OMOPQuerier
 
Parameters:

 
    
-
  • schema_name (str) – Name of schema in the database.
    • 
-
  • table_name (str) – Name of table in the database.
    • 
+
  • schema_name (str) – Name of schema in the database.
    • 
+
  • table_name (str) – Name of table in the database.
    • 
 

 

 
Returns:

@@ -309,7 +309,7 @@ 
cycquery.omop.OMOPQuerier
 
Parameters:

-
schema_name (Optional[str]) – Name of schema in the database.

+
schema_name (Optional[str]) – Name of schema in the database.

 

 
Returns:

 
List of table names.

@@ -331,9 +331,9 @@ 
cycquery.omop.OMOPQuerier
 
Parameters:

 

 

 
Returns:

diff --git a/reference/api/_autosummary/cycquery.ops.AddColumn.html b/reference/api/_autosummary/cycquery.ops.AddColumn.html
index eeddc37..01e86ad 100644
--- a/reference/api/_autosummary/cycquery.ops.AddColumn.html
+++ b/reference/api/_autosummary/cycquery.ops.AddColumn.html
@@ -235,10 +235,10 @@ 
cycquery.ops.AddColumn
 
Parameters:

 
    
-
  • add_to (Union[str, List[str]]) – Column names specifying to which columns is being added.
    • 
-
  • col (str) – Column name of column to add to the add_to columns.
    • 
-
  • negative (Optional[bool]) – Subtract the column rather than adding.
    • 
-
  • new_col_labels (Union[str, List[str], None]) – If specified, create new columns with these labels. Otherwise,
+
  • add_to (Union[str, List[str]]) – Column names specifying to which columns is being added.
    • 
+
  • col (str) – Column name of column to add to the add_to columns.
    • 
+
  • negative (Optional[bool]) – Subtract the column rather than adding.
    • 
+
  • new_col_labels (Union[str, List[str], None]) – If specified, create new columns with these labels. Otherwise,
 apply the function to the existing columns.
    • 
 

 

@@ -267,7 +267,7 @@ 
cycquery.ops.AddColumn
Process the table.

 

 
Parameters:

-
table (Union[Select, Subquery, Table, DBTable]) – Table on which to perform the operation.

+
table (Union[Select, Subquery, Table, DBTable]) – Table on which to perform the operation.

 

 
Returns:

 
Processed table.

diff --git a/reference/api/_autosummary/cycquery.ops.AddDeltaColumn.html b/reference/api/_autosummary/cycquery.ops.AddDeltaColumn.html
index a63d33e..43a8ff7 100644
--- a/reference/api/_autosummary/cycquery.ops.AddDeltaColumn.html
+++ b/reference/api/_autosummary/cycquery.ops.AddDeltaColumn.html
@@ -235,11 +235,11 @@ 
cycquery.ops.AddDeltaColumn
 
Parameters:

 
    
-
  • add_to (Union[str, List[str]]) – Column names specifying to which columns is being added.
    • 
-
  • negative (Optional[bool]) – Subtract the object rather than adding.
    • 
-
  • new_col_labels (Union[str, List[str], None]) – If specified, create new columns with these labels. Otherwise,
+
  • add_to (Union[str, List[str]]) – Column names specifying to which columns is being added.
    • 
+
  • negative (Optional[bool]) – Subtract the object rather than adding.
    • 
+
  • new_col_labels (Union[str, List[str], None]) – If specified, create new columns with these labels. Otherwise,
 apply the function to the existing columns.
    • 
-
  • **delta_kwargs (Any) – The arguments used to create the Interval column.
    • 
+
  • **delta_kwargs (Any) – The arguments used to create the Interval column.
    • 
 

 

 

@@ -261,7 +261,7 @@ 
cycquery.ops.AddDeltaColumn
 
Parameters:

-
table (Union[Select, Subquery, Table, DBTable]) – Table on which to perform the operation.

+
table (Union[Select, Subquery, Table, DBTable]) – Table on which to perform the operation.

 

 
Returns:

 
Processed table.

diff --git a/reference/api/_autosummary/cycquery.ops.AddDeltaConstant.html b/reference/api/_autosummary/cycquery.ops.AddDeltaConstant.html
index 49bb333..584e7f1 100644
--- a/reference/api/_autosummary/cycquery.ops.AddDeltaConstant.html
+++ b/reference/api/_autosummary/cycquery.ops.AddDeltaConstant.html
@@ -235,9 +235,9 @@ 
cycquery.ops.AddDeltaConstant
 
Parameters:

 
    
-
  • add_to (Union[str, List[str]]) – Column names specifying to which columns is being added.
    • 
-
  • delta (timedelta) – A timedelta object.
    • 
-
  • new_col_labels (Union[str, List[str], None]) – If specified, create new columns with these labels. Otherwise,
+
  • add_to (Union[str, List[str]]) – Column names specifying to which columns is being added.
    • 
+
  • delta (timedelta) – A timedelta object.
    • 
+
  • new_col_labels (Union[str, List[str], None]) – If specified, create new columns with these labels. Otherwise,
 apply the function to the existing columns.
    • 
 

 

@@ -259,7 +259,7 @@ 
cycquery.ops.AddDeltaConstant
 
Parameters:

-
table (Union[Select, Subquery, Table, DBTable]) – Table on which to perform the operation.

+
table (Union[Select, Subquery, Table, DBTable]) – Table on which to perform the operation.

 

 
Returns:

 
Processed table.

diff --git a/reference/api/_autosummary/cycquery.ops.AddNumeric.html b/reference/api/_autosummary/cycquery.ops.AddNumeric.html
index 79e5733..f1a3df4 100644
--- a/reference/api/_autosummary/cycquery.ops.AddNumeric.html
+++ b/reference/api/_autosummary/cycquery.ops.AddNumeric.html
@@ -235,9 +235,9 @@ 
cycquery.ops.AddNumeric
 
Parameters:

 

 

@@ -261,7 +261,7 @@ 
cycquery.ops.AddNumeric
Process the table.

 

 
Parameters:

-
table (Union[Select, Subquery, Table, DBTable]) – Table on which to perform the operation.

+
table (Union[Select, Subquery, Table, DBTable]) – Table on which to perform the operation.

 

 
Returns:

 
Processed table.

diff --git a/reference/api/_autosummary/cycquery.ops.And.html b/reference/api/_autosummary/cycquery.ops.And.html
index 7c5545a..3d8912f 100644
--- a/reference/api/_autosummary/cycquery.ops.And.html
+++ b/reference/api/_autosummary/cycquery.ops.And.html
@@ -254,8 +254,8 @@ 
cycquery.ops.And
 
Parameters:

 

 

 
Returns:

diff --git a/reference/api/_autosummary/cycquery.ops.Apply.html b/reference/api/_autosummary/cycquery.ops.Apply.html
index b6282d6..d95c265 100644
--- a/reference/api/_autosummary/cycquery.ops.Apply.html
+++ b/reference/api/_autosummary/cycquery.ops.Apply.html
@@ -239,10 +239,10 @@ 
cycquery.ops.Apply
 
Parameters:

 

 

 

@@ -265,7 +265,7 @@ 
cycquery.ops.Apply
 
Parameters:

-
table (Union[Select, Subquery, Table, DBTable]) – Table on which to perform the operation.

+
table (Union[Select, Subquery, Table, DBTable]) – Table on which to perform the operation.

 

 
Returns:

 
Processed table.

diff --git a/reference/api/_autosummary/cycquery.ops.Cast.html b/reference/api/_autosummary/cycquery.ops.Cast.html
index b990d07..3bc1237 100644
--- a/reference/api/_autosummary/cycquery.ops.Cast.html
+++ b/reference/api/_autosummary/cycquery.ops.Cast.html
@@ -236,7 +236,7 @@ 
cycquery.ops.Cast
 
Parameters:

 

 

@@ -261,7 +261,7 @@ 
cycquery.ops.Cast
 
Parameters:

-
table (Union[Select, Subquery, Table, DBTable]) – Table on which to perform the operation.

+
table (Union[Select, Subquery, Table, DBTable]) – Table on which to perform the operation.

 

 
Returns:

 
Processed table.

diff --git a/reference/api/_autosummary/cycquery.ops.ConditionAfterDate.html b/reference/api/_autosummary/cycquery.ops.ConditionAfterDate.html
index 87fd7ff..682d60d 100644
--- a/reference/api/_autosummary/cycquery.ops.ConditionAfterDate.html
+++ b/reference/api/_autosummary/cycquery.ops.ConditionAfterDate.html
@@ -235,10 +235,10 @@ 
cycquery.ops.ConditionAfterDate
 
Parameters:

 
    
-
  • timestamp_col (str) – Timestamp column name.
    • 
-
  • timestamp (Union[str, datetime]) – A datetime object or str in YYYY-MM-DD format.
    • 
+
  • timestamp_col (str) – Timestamp column name.
    • 
+
  • timestamp (Union[str, datetime]) – A datetime object or str in YYYY-MM-DD format.
    • 
 
  • not – Take negation of condition.
    • 
-
  • binarize_col (Optional[str]) – If specified, create a Boolean column of name binarize_col instead of filtering.
    • 
+
  • binarize_col (Optional[str]) – If specified, create a Boolean column of name binarize_col instead of filtering.
    • 
 

 

 
@@ -260,8 +260,8 @@ 
cycquery.ops.ConditionAfterDate
 
Parameters:

 

 

 
Returns:

diff --git a/reference/api/_autosummary/cycquery.ops.ConditionBeforeDate.html b/reference/api/_autosummary/cycquery.ops.ConditionBeforeDate.html
index 3ee3094..7566985 100644
--- a/reference/api/_autosummary/cycquery.ops.ConditionBeforeDate.html
+++ b/reference/api/_autosummary/cycquery.ops.ConditionBeforeDate.html
@@ -235,10 +235,10 @@ 
cycquery.ops.ConditionBeforeDate
 
Parameters:

 
    
-
  • timestamp_col (str) – Timestamp column name.
    • 
-
  • timestamp (Union[str, datetime]) – A datetime object or str in YYYY-MM-DD format.
    • 
+
  • timestamp_col (str) – Timestamp column name.
    • 
+
  • timestamp (Union[str, datetime]) – A datetime object or str in YYYY-MM-DD format.
    • 
 
  • not – Take negation of condition.
    • 
-
  • binarize_col (Optional[str]) – If specified, create a Boolean column of name binarize_col instead of filtering.
    • 
+
  • binarize_col (Optional[str]) – If specified, create a Boolean column of name binarize_col instead of filtering.
    • 
 

 

 
@@ -260,8 +260,8 @@ 
cycquery.ops.ConditionBeforeDate
 
Parameters:

 

 

 
Returns:

diff --git a/reference/api/_autosummary/cycquery.ops.ConditionEndsWith.html b/reference/api/_autosummary/cycquery.ops.ConditionEndsWith.html
index d117c9a..fcfbc2a 100644
--- a/reference/api/_autosummary/cycquery.ops.ConditionEndsWith.html
+++ b/reference/api/_autosummary/cycquery.ops.ConditionEndsWith.html
@@ -235,11 +235,11 @@ 
cycquery.ops.ConditionEndsWith
 
Parameters:

 
    
-
  • col (str) – Column name on which to condition.
    • 
-
  • string (str) – String to end with.
    • 
+
  • col (str) – Column name on which to condition.
    • 
+
  • string (str) – String to end with.
    • 
 
  • not – Take negation of condition.
    • 
-
  • binarize_col (Optional[str]) – If specified, create a Boolean column of name binarize_col instead of filtering.
    • 
-
  • **cond_kwargs (Any) – Optional keyword arguments for processing the condition.
    • 
+
  • binarize_col (Optional[str]) – If specified, create a Boolean column of name binarize_col instead of filtering.
    • 
+
  • **cond_kwargs (Any) – Optional keyword arguments for processing the condition.
    • 
 

 

 
@@ -260,8 +260,8 @@ 
cycquery.ops.ConditionEndsWith
 
Parameters:

 

 

 
Returns:

diff --git a/reference/api/_autosummary/cycquery.ops.ConditionEquals.html b/reference/api/_autosummary/cycquery.ops.ConditionEquals.html
index f285fcc..80df546 100644
--- a/reference/api/_autosummary/cycquery.ops.ConditionEquals.html
+++ b/reference/api/_autosummary/cycquery.ops.ConditionEquals.html
@@ -235,11 +235,11 @@ 
cycquery.ops.ConditionEquals
 
Parameters:

 
    
-
  • col (str) – Column name on which to condition.
    • 
-
  • value (Any) – Value to equal.
    • 
+
  • col (str) – Column name on which to condition.
    • 
+
  • value (Any) – Value to equal.
    • 
 
  • not – Take negation of condition.
    • 
-
  • binarize_col (Optional[str]) – If specified, create a Boolean column of name binarize_col instead of filtering.
    • 
-
  • **cond_kwargs (Any) – Optional keyword arguments for processing the condition.
    • 
+
  • binarize_col (Optional[str]) – If specified, create a Boolean column of name binarize_col instead of filtering.
    • 
+
  • **cond_kwargs (Any) – Optional keyword arguments for processing the condition.
    • 
 

 

 
@@ -260,8 +260,8 @@ 
cycquery.ops.ConditionEquals
 
Parameters:

 

 

 
Returns:

diff --git a/reference/api/_autosummary/cycquery.ops.ConditionGreaterThan.html b/reference/api/_autosummary/cycquery.ops.ConditionGreaterThan.html
index a251d28..1060bbc 100644
--- a/reference/api/_autosummary/cycquery.ops.ConditionGreaterThan.html
+++ b/reference/api/_autosummary/cycquery.ops.ConditionGreaterThan.html
@@ -235,12 +235,12 @@ 
cycquery.ops.ConditionGreaterThan
 
Parameters:

 
    
-
  • col (str) – Column name on which to condition.
    • 
-
  • value (Any) – Value greater than.
    • 
-
  • equal (bool) – Include equality to the value.
    • 
+
  • col (str) – Column name on which to condition.
    • 
+
  • value (Any) – Value greater than.
    • 
+
  • equal (bool) – Include equality to the value.
    • 
 
  • not – Take negation of condition.
    • 
-
  • binarize_col (Optional[str]) – If specified, create a Boolean column of name binarize_col instead of filtering.
    • 
-
  • **cond_kwargs (Any) – Optional keyword arguments for processing the condition.
    • 
+
  • binarize_col (Optional[str]) – If specified, create a Boolean column of name binarize_col instead of filtering.
    • 
+
  • **cond_kwargs (Any) – Optional keyword arguments for processing the condition.
    • 
 

 

 
@@ -261,8 +261,8 @@ 
cycquery.ops.ConditionGreaterThan
 
Parameters:

 

 

 
Returns:

diff --git a/reference/api/_autosummary/cycquery.ops.ConditionIn.html b/reference/api/_autosummary/cycquery.ops.ConditionIn.html
index 08c96bf..ca09260 100644
--- a/reference/api/_autosummary/cycquery.ops.ConditionIn.html
+++ b/reference/api/_autosummary/cycquery.ops.ConditionIn.html
@@ -235,11 +235,11 @@ 
cycquery.ops.ConditionIn
 
Parameters:

 
    
-
  • col (str) – Column name on which to condition.
    • 
-
  • values (Union[Any, List[Any]]) – Values in which the column value must be.
    • 
+
  • col (str) – Column name on which to condition.
    • 
+
  • values (Union[Any, List[Any]]) – Values in which the column value must be.
    • 
 
  • not – Take negation of condition.
    • 
-
  • binarize_col (Optional[str]) – If specified, create a Boolean column of name binarize_col instead of filtering.
    • 
-
  • **cond_kwargs (Any) – Optional keyword arguments for processing the condition.
    • 
+
  • binarize_col (Optional[str]) – If specified, create a Boolean column of name binarize_col instead of filtering.
    • 
+
  • **cond_kwargs (Any) – Optional keyword arguments for processing the condition.
    • 
 

 

 
@@ -260,8 +260,8 @@ 
cycquery.ops.ConditionIn
 
Parameters:

 

 

 
Returns:

diff --git a/reference/api/_autosummary/cycquery.ops.ConditionInMonths.html b/reference/api/_autosummary/cycquery.ops.ConditionInMonths.html
index d21653a..ec4d4bc 100644
--- a/reference/api/_autosummary/cycquery.ops.ConditionInMonths.html
+++ b/reference/api/_autosummary/cycquery.ops.ConditionInMonths.html
@@ -235,10 +235,10 @@ 
cycquery.ops.ConditionInMonths
 
Parameters:

 
    
-
  • timestamp_col (str) – Timestamp column name.
    • 
-
  • months (Union[int, List[int]]) – Months in which the timestamps must be.
    • 
+
  • timestamp_col (str) – Timestamp column name.
    • 
+
  • months (Union[int, List[int]]) – Months in which the timestamps must be.
    • 
 
  • not – Take negation of condition.
    • 
-
  • binarize_col (Optional[str]) – If specified, create a Boolean column of name binarize_col instead of filtering.
    • 
+
  • binarize_col (Optional[str]) – If specified, create a Boolean column of name binarize_col instead of filtering.
    • 
 

 

 
@@ -260,8 +260,8 @@ 
cycquery.ops.ConditionInMonths
 
Parameters:

 

 

 
Returns:

diff --git a/reference/api/_autosummary/cycquery.ops.ConditionInYears.html b/reference/api/_autosummary/cycquery.ops.ConditionInYears.html
index e71066e..cfa1c06 100644
--- a/reference/api/_autosummary/cycquery.ops.ConditionInYears.html
+++ b/reference/api/_autosummary/cycquery.ops.ConditionInYears.html
@@ -235,10 +235,10 @@ 
cycquery.ops.ConditionInYears
 
Parameters:

 
    
-
  • timestamp_col (str) – Timestamp column name.
    • 
-
  • years (Union[int, List[int]]) – Years in which the timestamps must be.
    • 
+
  • timestamp_col (str) – Timestamp column name.
    • 
+
  • years (Union[int, List[int]]) – Years in which the timestamps must be.
    • 
 
  • not – Take negation of condition.
    • 
-
  • binarize_col (Optional[str]) – If specified, create a Boolean column of name binarize_col instead of filtering.
    • 
+
  • binarize_col (Optional[str]) – If specified, create a Boolean column of name binarize_col instead of filtering.
    • 
 

 

 
@@ -260,8 +260,8 @@ 
cycquery.ops.ConditionInYears
 
Parameters:

 

 

 
Returns:

diff --git a/reference/api/_autosummary/cycquery.ops.ConditionLessThan.html b/reference/api/_autosummary/cycquery.ops.ConditionLessThan.html
index 626ea40..83e024f 100644
--- a/reference/api/_autosummary/cycquery.ops.ConditionLessThan.html
+++ b/reference/api/_autosummary/cycquery.ops.ConditionLessThan.html
@@ -235,12 +235,12 @@ 
cycquery.ops.ConditionLessThan
 
Parameters:

 
    
-
  • col (str) – Column name on which to condition.
    • 
-
  • value (Any) – Value greater than.
    • 
-
  • equal (bool) – Include equality to the value.
    • 
+
  • col (str) – Column name on which to condition.
    • 
+
  • value (Any) – Value greater than.
    • 
+
  • equal (bool) – Include equality to the value.
    • 
 
  • not – Take negation of condition.
    • 
-
  • binarize_col (Optional[str]) – If specified, create a Boolean column of name binarize_col instead of filtering.
    • 
-
  • **cond_kwargs (Any) – Optional keyword arguments for processing the condition.
    • 
+
  • binarize_col (Optional[str]) – If specified, create a Boolean column of name binarize_col instead of filtering.
    • 
+
  • **cond_kwargs (Any) – Optional keyword arguments for processing the condition.
    • 
 

 

 
@@ -261,8 +261,8 @@ 
cycquery.ops.ConditionLessThan
 
Parameters:

 

 

 
Returns:

diff --git a/reference/api/_autosummary/cycquery.ops.ConditionLike.html b/reference/api/_autosummary/cycquery.ops.ConditionLike.html
index 2d6a1fe..70e3d03 100644
--- a/reference/api/_autosummary/cycquery.ops.ConditionLike.html
+++ b/reference/api/_autosummary/cycquery.ops.ConditionLike.html
@@ -235,10 +235,10 @@ 
cycquery.ops.ConditionLike
 
Parameters:

 
    
-
  • col (str) – Column to filter on.
    • 
-
  • pattern (str) – Pattern to filter on.
    • 
+
  • col (str) – Column to filter on.
    • 
+
  • pattern (str) – Pattern to filter on.
    • 
 
  • not – Take negation of condition.
    • 
-
  • binarize_col (Optional[str]) – If specified, create a Boolean column of name binarize_col instead of filtering.
    • 
+
  • binarize_col (Optional[str]) – If specified, create a Boolean column of name binarize_col instead of filtering.
    • 
 

 

 
@@ -260,8 +260,8 @@ 
cycquery.ops.ConditionLike
 
Parameters:

 

 

 
Returns:

diff --git a/reference/api/_autosummary/cycquery.ops.ConditionRegexMatch.html b/reference/api/_autosummary/cycquery.ops.ConditionRegexMatch.html
index fff2037..47128de 100644
--- a/reference/api/_autosummary/cycquery.ops.ConditionRegexMatch.html
+++ b/reference/api/_autosummary/cycquery.ops.ConditionRegexMatch.html
@@ -235,10 +235,10 @@ 
cycquery.ops.ConditionRegexMatch
 
Parameters:

 
    
-
  • col (str) – Column name on which to condition.
    • 
-
  • regex (str) – Regular expression to match.
    • 
+
  • col (str) – Column name on which to condition.
    • 
+
  • regex (str) – Regular expression to match.
    • 
 
  • not – Take negation of condition.
    • 
-
  • binarize_col (Optional[str]) – If specified, create a Boolean column of name binarize_col instead of filtering.
    • 
+
  • binarize_col (Optional[str]) – If specified, create a Boolean column of name binarize_col instead of filtering.
    • 
 

 

 
@@ -259,8 +259,8 @@ 
cycquery.ops.ConditionRegexMatch
 
Parameters:

 

 

 
Returns:

diff --git a/reference/api/_autosummary/cycquery.ops.ConditionStartsWith.html b/reference/api/_autosummary/cycquery.ops.ConditionStartsWith.html
index a3c35c4..1e22a39 100644
--- a/reference/api/_autosummary/cycquery.ops.ConditionStartsWith.html
+++ b/reference/api/_autosummary/cycquery.ops.ConditionStartsWith.html
@@ -239,7 +239,7 @@ 
cycquery.ops.ConditionStartsWithbool, default=False) – Take negation of condition.

 
  • binarize_col (str, optional) – If specified, create a Boolean column of name binarize_col instead of filtering.
    • 
-
  • **cond_kwargs (Any) – Optional keyword arguments for processing the condition.
    • 
+
  • **cond_kwargs (Any) – Optional keyword arguments for processing the condition.
    • 
 
 
    
 
@@ -260,8 +260,8 @@ 
    cycquery.ops.ConditionStartsWith
 
    Parameters:
    
 
    
 
    
 
    Returns:
    
diff --git a/reference/api/_autosummary/cycquery.ops.ConditionSubstring.html b/reference/api/_autosummary/cycquery.ops.ConditionSubstring.html
index 139ce93..dfaacb7 100644
--- a/reference/api/_autosummary/cycquery.ops.ConditionSubstring.html
+++ b/reference/api/_autosummary/cycquery.ops.ConditionSubstring.html
@@ -237,13 +237,13 @@ 
    cycquery.ops.ConditionSubstring
 
    Parameters:
    
 
      
-
    • col (str) – Column name on which to condition.
      • 
-
    • substrings (Union[str, List[str]]) – Substrings.
      • 
+
    • col (str) – Column name on which to condition.
      • 
+
    • substrings (Union[str, List[str]]) – Substrings.
      • 
 
    • any – If true, the row must have just one of the substrings. If false, it must
 have all of the substrings.
      • 
 
    • not – Take negation of condition.
      • 
-
    • binarize_col (Optional[str]) – If specified, create a Boolean column of name binarize_col instead of filtering.
      • 
-
    • **cond_kwargs (Any) – Optional keyword arguments for processing the condition.
      • 
+
    • binarize_col (Optional[str]) – If specified, create a Boolean column of name binarize_col instead of filtering.
      • 
+
    • **cond_kwargs (Any) – Optional keyword arguments for processing the condition.
      • 
 
    
 
    
 
@@ -265,8 +265,8 @@ 
    cycquery.ops.ConditionSubstring
 
    Parameters:
    
 
    
 
    
 
    Returns:
    
diff --git a/reference/api/_autosummary/cycquery.ops.Count.html b/reference/api/_autosummary/cycquery.ops.Count.html
index 81f55d3..110498c 100644
--- a/reference/api/_autosummary/cycquery.ops.Count.html
+++ b/reference/api/_autosummary/cycquery.ops.Count.html
@@ -234,7 +234,7 @@ 
    cycquery.ops.Count
 
    Parameters:
    
-
    col (str) – Column to count.
    
+
    col (str) – Column to count.
    
 
    
 
 
    Examples
    
@@ -253,7 +253,7 @@ 
    cycquery.ops.Count
 
    Parameters:
    
 
    
 
    
diff --git a/reference/api/_autosummary/cycquery.ops.Distinct.html b/reference/api/_autosummary/cycquery.ops.Distinct.html
index c608047..e728f24 100644
--- a/reference/api/_autosummary/cycquery.ops.Distinct.html
+++ b/reference/api/_autosummary/cycquery.ops.Distinct.html
@@ -234,7 +234,7 @@ 
    cycquery.ops.DistinctGet distinct rows.
    
 
    
 
    Parameters:
    
-
    cols (Union[str, List[str]]) – Columns to use for distinct.
    
+
    cols (Union[str, List[str]]) – Columns to use for distinct.
    
 
    
 
    
 
    Examples
    
@@ -253,7 +253,7 @@ 
    cycquery.ops.Distinct
    Process the table.
    
 
    
 
    Parameters:
    
-
    table (Union[Select, Subquery, Table, DBTable]) – Table on which to perform the operation.
    
+
    table (Union[Select, Subquery, Table, DBTable]) – Table on which to perform the operation.
    
 
    
 
    Returns:
    
 
    Processed table.
    
diff --git a/reference/api/_autosummary/cycquery.ops.Drop.html b/reference/api/_autosummary/cycquery.ops.Drop.html
index cc2b4cd..7f4426f 100644
--- a/reference/api/_autosummary/cycquery.ops.Drop.html
+++ b/reference/api/_autosummary/cycquery.ops.Drop.html
@@ -234,7 +234,7 @@ 
    cycquery.ops.Drop
 
    Parameters:
    
-
    cols (Union[str, List[str]]) – Columns to drop.
    
+
    cols (Union[str, List[str]]) – Columns to drop.
    
 
    
 
    
 
    Examples
    
@@ -253,7 +253,7 @@ 
    cycquery.ops.Drop
 
    Parameters:
    
-
    table (Union[Select, Subquery, Table, DBTable]) – Table on which to perform the operation.
    
+
    table (Union[Select, Subquery, Table, DBTable]) – Table on which to perform the operation.
    
 
    
 
    Returns:
    
 
    Processed table.
    
diff --git a/reference/api/_autosummary/cycquery.ops.DropEmpty.html b/reference/api/_autosummary/cycquery.ops.DropEmpty.html
index a20e6b5..5a14ae0 100644
--- a/reference/api/_autosummary/cycquery.ops.DropEmpty.html
+++ b/reference/api/_autosummary/cycquery.ops.DropEmpty.html
@@ -234,7 +234,7 @@ 
    cycquery.ops.DropEmptyRemove rows with empty values in some specified columns.
    
 
    
 
    Parameters:
    
-
    cols (Union[str, List[str]]) – Columns in which, if a value is empty, the corresponding row is removed.
    
+
    cols (Union[str, List[str]]) – Columns in which, if a value is empty, the corresponding row is removed.
    
 
    
 
    
 
    Examples
    
@@ -253,7 +253,7 @@ 
    cycquery.ops.DropEmpty
    Process the table.
    
 
    
 
    Parameters:
    
-
    table (Union[Select, Subquery, Table, DBTable]) – Table on which to perform the operation.
    
+
    table (Union[Select, Subquery, Table, DBTable]) – Table on which to perform the operation.
    
 
    
 
    Returns:
    
 
    Processed table.
    
diff --git a/reference/api/_autosummary/cycquery.ops.DropNulls.html b/reference/api/_autosummary/cycquery.ops.DropNulls.html
index cfad936..83a5a59 100644
--- a/reference/api/_autosummary/cycquery.ops.DropNulls.html
+++ b/reference/api/_autosummary/cycquery.ops.DropNulls.html
@@ -234,7 +234,7 @@ 
    cycquery.ops.DropNullsRemove rows with null values in some specified columns.
    
 
    
 
    Parameters:
    
-
    cols (Union[str, List[str]]) – Columns in which, if a value is null, the corresponding row is removed.
    
+
    cols (Union[str, List[str]]) – Columns in which, if a value is null, the corresponding row is removed.
    
 
    
 
    
 
    Examples
    
@@ -253,7 +253,7 @@ 
    cycquery.ops.DropNulls
    Process the table.
    
 
    
 
    Parameters:
    
-
    table (Union[Select, Subquery, Table, DBTable]) – Table on which to perform the operation.
    
+
    table (Union[Select, Subquery, Table, DBTable]) – Table on which to perform the operation.
    
 
    
 
    Returns:
    
 
    Processed table.
    
diff --git a/reference/api/_autosummary/cycquery.ops.ExtractTimestampComponent.html b/reference/api/_autosummary/cycquery.ops.ExtractTimestampComponent.html
index 9a62ff8..da0277b 100644
--- a/reference/api/_autosummary/cycquery.ops.ExtractTimestampComponent.html
+++ b/reference/api/_autosummary/cycquery.ops.ExtractTimestampComponent.html
@@ -235,9 +235,9 @@ 
    cycquery.ops.ExtractTimestampComponent
 
    Parameters:
    
 
      
-
    • timestamp_col (str) – Timestamp column from which to extract the time component.
      • 
-
    • extract_str (str) – Information to extract, e.g., “year”, “month”
      • 
-
    • label (str) – Column label for the extracted column.
      • 
+
    • timestamp_col (str) – Timestamp column from which to extract the time component.
      • 
+
    • extract_str (str) – Information to extract, e.g., “year”, “month”
      • 
+
    • label (str) – Column label for the extracted column.
      • 
 
    
 
    
 
    
@@ -257,7 +257,7 @@ 
    cycquery.ops.ExtractTimestampComponent
 
    Parameters:
    
-
    table (Union[Select, Subquery, Table, DBTable]) – Table on which to perform the operation.
    
+
    table (Union[Select, Subquery, Table, DBTable]) – Table on which to perform the operation.
    
 
    
 
    Returns:
    
 
    Processed table.
    
diff --git a/reference/api/_autosummary/cycquery.ops.FillNull.html b/reference/api/_autosummary/cycquery.ops.FillNull.html
index c437f2d..8c59b9e 100644
--- a/reference/api/_autosummary/cycquery.ops.FillNull.html
+++ b/reference/api/_autosummary/cycquery.ops.FillNull.html
@@ -235,9 +235,9 @@ 
    cycquery.ops.FillNull
 
    Parameters:
    
 
    
 
    
 
    
@@ -258,7 +258,7 @@ 
    cycquery.ops.FillNull
    Fill NULL values with a given value.
    
 
    
 
    Parameters:
    
-
    table (Union[Select, Subquery, Table, DBTable]) – Table on which to perform the operation.
    
+
    table (Union[Select, Subquery, Table, DBTable]) – Table on which to perform the operation.
    
 
    
 
    Returns:
    
 
    Table with NULL values filled.
    
diff --git a/reference/api/_autosummary/cycquery.ops.GroupByAggregate.html b/reference/api/_autosummary/cycquery.ops.GroupByAggregate.html
index b3f3f8f..ee9d7b1 100644
--- a/reference/api/_autosummary/cycquery.ops.GroupByAggregate.html
+++ b/reference/api/_autosummary/cycquery.ops.GroupByAggregate.html
@@ -235,13 +235,13 @@ 
    cycquery.ops.GroupByAggregate
 
    Parameters:
    
 
      
-
    • groupby_cols (Union[str, List[str]]) – Columns by which to group.
      • 
-
    • aggfuncs (Union[Dict[str, Sequence[str]], Dict[str, str]]) – Specify a dictionary of key-value pairs:
+
    • groupby_cols (Union[str, List[str]]) – Columns by which to group.
      • 
+
    • aggfuncs (Union[Dict[str, Sequence[str]], Dict[str, str]]) – Specify a dictionary of key-value pairs:
 column name: aggfunc string or
 column name: (aggfunc string, new column label)
 This labelling prevents the aggregation of the same column using multiple
 aggregation functions.
      • 
-
    • aggseps (Optional[Dict[str, str]]) – Specify a dictionary of key-value pairs:
+
    • aggseps (Optional[Dict[str, str]]) – Specify a dictionary of key-value pairs:
 column name: string_aggfunc separator
 If string_agg used as aggfunc for a column, then a separator must be provided
 for the same column.
      • 
@@ -266,7 +266,7 @@ 
      cycquery.ops.GroupByAggregate
 
      Parameters:
      
-
      table (Union[Select, Subquery, Table, DBTable]) – Table on which to perform the operation.
      
+
      table (Union[Select, Subquery, Table, DBTable]) – Table on which to perform the operation.
      
 
      
 
      Returns:
      
 
      Processed table.
      
diff --git a/reference/api/_autosummary/cycquery.ops.Join.html b/reference/api/_autosummary/cycquery.ops.Join.html
index d6a1581..5c64465 100644
--- a/reference/api/_autosummary/cycquery.ops.Join.html
+++ b/reference/api/_autosummary/cycquery.ops.Join.html
@@ -235,18 +235,18 @@ 
      cycquery.ops.Join
 
      Parameters:
      
 
        
-
      • join_table (Union[Select, Subquery, Table, DBTable]) – Table on which to join.
        • 
-
      • on (Union[str, List[str], Tuple[str], List[Tuple[str, str]], None]) – A list of strings or tuples representing columns on which to join.
+
      • join_table (Union[Select, Subquery, Table, DBTable]) – Table on which to join.
        • 
+
      • on (Union[str, List[str], Tuple[str], List[Tuple[str, str]], None]) – A list of strings or tuples representing columns on which to join.
 Strings represent columns of same name in both tables. A tuple of
 style (table_col, join_table_col) is used to join on columns of
 different names. Suggested to specify this parameter as opposed to
 cond.
        • 
-
      • on_to_type (Union[type, List[type], None]) – A list of types to which to convert the on columns before joining. Useful when
+
      • on_to_type (Union[type, List[type], None]) – A list of types to which to convert the on columns before joining. Useful when
 two columns have the same values but in different format, e.g., strings of int.
        • 
-
      • cond (Optional[BinaryExpression]) – Condition on which to join to tables.
        • 
-
      • table_cols (Union[str, List[str], None]) – Filters to keep only these columns from the table.
        • 
-
      • join_table_cols (Union[str, List[str], None]) – Filters to keep only these columns from the join_table.
        • 
-
      • isouter (Optional[bool]) – Flag to say if the join is a left outer join.
        • 
+
      • cond (Optional[BinaryExpression]) – Condition on which to join to tables.
        • 
+
      • table_cols (Union[str, List[str], None]) – Filters to keep only these columns from the table.
        • 
+
      • join_table_cols (Union[str, List[str], None]) – Filters to keep only these columns from the join_table.
        • 
+
      • isouter (Optional[bool]) – Flag to say if the join is a left outer join.
        • 
 
      
 
      
 
    
@@ -272,7 +272,7 @@ 
    cycquery.ops.Join
 
    Parameters:
    
-
    table (Union[Select, Subquery, Table, DBTable]) – Table on which to perform the operation.
    
+
    table (Union[Select, Subquery, Table, DBTable]) – Table on which to perform the operation.
    
 
    
 
    Returns:
    
 
    Processed table.
    
diff --git a/reference/api/_autosummary/cycquery.ops.Keep.html b/reference/api/_autosummary/cycquery.ops.Keep.html
index 9bdda01..2aa823c 100644
--- a/reference/api/_autosummary/cycquery.ops.Keep.html
+++ b/reference/api/_autosummary/cycquery.ops.Keep.html
@@ -234,7 +234,7 @@ 
    cycquery.ops.Keep
 
    Parameters:
    
-
    cols (Union[str, List[str]]) – The columns to keep.
    
+
    cols (Union[str, List[str]]) – The columns to keep.
    
 
    
 
 
    Examples
    
@@ -253,7 +253,7 @@ 
    cycquery.ops.Keep
 
    Parameters:
    
-
    table (Union[Select, Subquery, Table, DBTable]) – Table on which to perform the operation.
    
+
    table (Union[Select, Subquery, Table, DBTable]) – Table on which to perform the operation.
    
 
    
 
    Returns:
    
 
    Processed table.
    
diff --git a/reference/api/_autosummary/cycquery.ops.Limit.html b/reference/api/_autosummary/cycquery.ops.Limit.html
index d9c1192..db77bf0 100644
--- a/reference/api/_autosummary/cycquery.ops.Limit.html
+++ b/reference/api/_autosummary/cycquery.ops.Limit.html
@@ -234,7 +234,7 @@ 
    cycquery.ops.Limit
 
    Parameters:
    
-
    number (int) – Number of rows to return in the limit.
    
+
    number (int) – Number of rows to return in the limit.
    
 
    
 
 
    Examples
    
@@ -252,7 +252,7 @@ 
    cycquery.ops.Limit
 
    Parameters:
    
-
    table (Union[Select, Subquery, Table, DBTable]) – Table on which to perform the operation.
    
+
    table (Union[Select, Subquery, Table, DBTable]) – Table on which to perform the operation.
    
 
    
 
    Returns:
    
 
    Processed table.
    
diff --git a/reference/api/_autosummary/cycquery.ops.Literal.html b/reference/api/_autosummary/cycquery.ops.Literal.html
index 4370ad4..388a32b 100644
--- a/reference/api/_autosummary/cycquery.ops.Literal.html
+++ b/reference/api/_autosummary/cycquery.ops.Literal.html
@@ -235,8 +235,8 @@ 
    cycquery.ops.Literal
 
    Parameters:
    
 
      
-
    • value (Any) – Value of the literal, e.g., a string or integer.
      • 
-
    • col (str) – Label of the new literal column.
      • 
+
    • value (Any) – Value of the literal, e.g., a string or integer.
      • 
+
    • col (str) – Label of the new literal column.
      • 
 
    
 
    
 
@@ -255,7 +255,7 @@ 
    cycquery.ops.Literal
    Process the table.
    
 
    
 
    Parameters:
    
-
    table (Union[Select, Subquery, Table, DBTable]) – Table on which to perform the operation.
    
+
    table (Union[Select, Subquery, Table, DBTable]) – Table on which to perform the operation.
    
 
    
 
    Returns:
    
 
    Processed table.
    
diff --git a/reference/api/_autosummary/cycquery.ops.Or.html b/reference/api/_autosummary/cycquery.ops.Or.html
index 2c9f1aa..82e8027 100644
--- a/reference/api/_autosummary/cycquery.ops.Or.html
+++ b/reference/api/_autosummary/cycquery.ops.Or.html
@@ -234,7 +234,7 @@ 
    cycquery.ops.Or
 
    Parameters:
    
-
    cond_ops (Union[QueryOp, List[QueryOp]]) – Condition Query ops to combine.
    
+
    cond_ops (Union[QueryOp, List[QueryOp]]) – Condition Query ops to combine.
    
 
    
 
    
 
    Examples
    
@@ -254,8 +254,8 @@ 
    cycquery.ops.Or
 
    Parameters:
    
 
    
 
    
 
    Returns:
    
diff --git a/reference/api/_autosummary/cycquery.ops.OrderBy.html b/reference/api/_autosummary/cycquery.ops.OrderBy.html
index e61a9b0..8746ead 100644
--- a/reference/api/_autosummary/cycquery.ops.OrderBy.html
+++ b/reference/api/_autosummary/cycquery.ops.OrderBy.html
@@ -235,8 +235,8 @@ 
    cycquery.ops.OrderBy
 
    Parameters:
    
 
      
-
    • cols (Union[str, List[str]]) – Columns by which to order.
      • 
-
    • ascending (Union[bool, List[bool], None]) – Whether to order each columns by ascending (True) or descending (False).
+
    • cols (Union[str, List[str]]) – Columns by which to order.
      • 
+
    • ascending (Union[bool, List[bool], None]) – Whether to order each columns by ascending (True) or descending (False).
 If not provided, orders all by ascending.
      • 
 
    
 
    
@@ -259,7 +259,7 @@ 
    cycquery.ops.OrderBy
    Process the table.
    
 
    
 
    Parameters:
    
-
    table (Union[Select, Subquery, Table, DBTable]) – Table on which to perform the operation.
    
+
    table (Union[Select, Subquery, Table, DBTable]) – Table on which to perform the operation.
    
 
    
 
    Returns:
    
 
    Processed table.
    
diff --git a/reference/api/_autosummary/cycquery.ops.QueryOp.html b/reference/api/_autosummary/cycquery.ops.QueryOp.html
index 6585233..d3ccab2 100644
--- a/reference/api/_autosummary/cycquery.ops.QueryOp.html
+++ b/reference/api/_autosummary/cycquery.ops.QueryOp.html
@@ -243,7 +243,7 @@ 
    cycquery.ops.QueryOp
    Implement a calling function.
    
 
    
 
    Return type:
    
-
    Subquery
    
+
    Subquery
    
 
    
 
    
 
    
diff --git a/reference/api/_autosummary/cycquery.ops.RandomizeOrder.html b/reference/api/_autosummary/cycquery.ops.RandomizeOrder.html
index b85dc87..265d504 100644
--- a/reference/api/_autosummary/cycquery.ops.RandomizeOrder.html
+++ b/reference/api/_autosummary/cycquery.ops.RandomizeOrder.html
@@ -253,7 +253,7 @@ 
    cycquery.ops.RandomizeOrder
 
    Parameters:
    
-
    table (Union[Select, Subquery, Table, DBTable]) – Table on which to perform the operation.
    
+
    table (Union[Select, Subquery, Table, DBTable]) – Table on which to perform the operation.
    
 
    
 
    Returns:
    
 
    Processed table.
    
diff --git a/reference/api/_autosummary/cycquery.ops.Rename.html b/reference/api/_autosummary/cycquery.ops.Rename.html
index b85d88d..9d2ef72 100644
--- a/reference/api/_autosummary/cycquery.ops.Rename.html
+++ b/reference/api/_autosummary/cycquery.ops.Rename.html
@@ -235,8 +235,8 @@ 
    cycquery.ops.Rename
 
    Parameters:
    
 
      
-
    • rename_map (Dict[str, str]) – Map from an existing column name to another name.
      • 
-
    • check_exists (bool) – Whether to check if all of the keys in the map exist as columns.
      • 
+
    • rename_map (Dict[str, str]) – Map from an existing column name to another name.
      • 
+
    • check_exists (bool) – Whether to check if all of the keys in the map exist as columns.
      • 
 
    
 
    
 
@@ -255,7 +255,7 @@ 
    cycquery.ops.Rename
 
    Parameters:
    
-
    table (Union[Select, Subquery, Table, DBTable]) – Table on which to perform the operation.
    
+
    table (Union[Select, Subquery, Table, DBTable]) – Table on which to perform the operation.
    
 
    
 
    Returns:
    
 
    Processed table.
    
diff --git a/reference/api/_autosummary/cycquery.ops.Reorder.html b/reference/api/_autosummary/cycquery.ops.Reorder.html
index cc85d45..0f7287c 100644
--- a/reference/api/_autosummary/cycquery.ops.Reorder.html
+++ b/reference/api/_autosummary/cycquery.ops.Reorder.html
@@ -234,7 +234,7 @@ 
    cycquery.ops.ReorderReorder the columns in a table.
    
 
    
 
    Parameters:
    
-
    cols (List[str]) – Complete list of table column names in the new order.
    
+
    cols (List[str]) – Complete list of table column names in the new order.
    
 
    
 
    
 
    Examples
    
@@ -252,7 +252,7 @@ 
    cycquery.ops.Reorder
    Process the table.
    
 
    
 
    Parameters:
    
-
    table (Union[Select, Subquery, Table, DBTable]) – Table on which to perform the operation.
    
+
    table (Union[Select, Subquery, Table, DBTable]) – Table on which to perform the operation.
    
 
    
 
    Returns:
    
 
    Processed table.
    
diff --git a/reference/api/_autosummary/cycquery.ops.ReorderAfter.html b/reference/api/_autosummary/cycquery.ops.ReorderAfter.html
index 8b8da97..27edc75 100644
--- a/reference/api/_autosummary/cycquery.ops.ReorderAfter.html
+++ b/reference/api/_autosummary/cycquery.ops.ReorderAfter.html
@@ -235,8 +235,8 @@ 
    cycquery.ops.ReorderAfter
 
    Parameters:
    
 
      
-
    • cols (Union[str, List[str]]) – Ordered list of column names which will come after a specified column.
      • 
-
    • after (str) – Column name for the column after which the other columns will follow.
      • 
+
    • cols (Union[str, List[str]]) – Ordered list of column names which will come after a specified column.
      • 
+
    • after (str) – Column name for the column after which the other columns will follow.
      • 
 
    
 
    
 
    
@@ -255,7 +255,7 @@ 
    cycquery.ops.ReorderAfter
 
    Parameters:
    
-
    table (Union[Select, Subquery, Table, DBTable]) – Table on which to perform the operation.
    
+
    table (Union[Select, Subquery, Table, DBTable]) – Table on which to perform the operation.
    
 
    
 
    Returns:
    
 
    Processed table.
    
diff --git a/reference/api/_autosummary/cycquery.ops.Sequential.html b/reference/api/_autosummary/cycquery.ops.Sequential.html
index a32ae36..13a30dd 100644
--- a/reference/api/_autosummary/cycquery.ops.Sequential.html
+++ b/reference/api/_autosummary/cycquery.ops.Sequential.html
@@ -245,7 +245,7 @@ 
    cycquery.ops.SequentialInitialize the class.
    
 
    
 
    Parameters:
    
-
    args (QueryOp) – Query operations to be chained sequentially.
    
+
    args (QueryOp) – Query operations to be chained sequentially.
    
 
    
 
    
 
    Methods
    
@@ -271,7 +271,7 @@ 
    cycquery.ops.Sequential
    Add two Sequential objects.
    
 
    
 
    Parameters:
    
-
    other (Sequential) – Sequential object to be added.
    
+
    other (Sequential) – Sequential object to be added.
    
 
    
 
    Returns:
    
 
    Sequential object with the two Sequential objects chained.
    
@@ -288,7 +288,7 @@ 
    cycquery.ops.Sequential
    Execute the query operations on the table.
    
 
    
 
    Parameters:
    
-
    table (Union[Select, Subquery, Table, DBTable]) – Table to be queried.
    
+
    table (Union[Select, Subquery, Table, DBTable]) – Table to be queried.
    
 
    
 
    Returns:
    
 
    Query result after chaining the query operations.
    
@@ -305,7 +305,7 @@ 
    cycquery.ops.Sequential
    Initialize the class.
    
 
    
 
    Parameters:
    
-
    args (QueryOp) – Query operations to be chained sequentially.
    
+
    args (QueryOp) – Query operations to be chained sequentially.
    
 
    
 
    
 
    
@@ -333,7 +333,7 @@ 
    cycquery.ops.Sequential
    Extend the sequential query op with another sequential query op.
    
 
    
 
    Parameters:
    
-
    sequential (Sequential) – Sequential object to extend with.
    
+
    sequential (Sequential) – Sequential object to extend with.
    
 
    
 
    Returns:
    
 
    Sequential object with the other sequential query op extended.
    
@@ -351,7 +351,7 @@ 
    cycquery.ops.Sequential
 
    Parameters:
    
 
      
-
    • index (int) – Index to insert the query op at.
      • 
+
    • index (int) – Index to insert the query op at.
      • 
 
    • op – Query op to insert.
      • 
 
    
 
    
@@ -370,7 +370,7 @@ 
    cycquery.ops.Sequential
    Pop the query op at the given index.
    
 
    
 
    Parameters:
    
-
    key (Union[int, slice]) – Index of the query op to pop.
    
+
    key (Union[int, slice]) – Index of the query op to pop.
    
 
    
 
    Returns:
    
 
    Popped query op.
    
diff --git a/reference/api/_autosummary/cycquery.ops.Substring.html b/reference/api/_autosummary/cycquery.ops.Substring.html
index f50a4e8..f73f7aa 100644
--- a/reference/api/_autosummary/cycquery.ops.Substring.html
+++ b/reference/api/_autosummary/cycquery.ops.Substring.html
@@ -235,10 +235,10 @@ 
    cycquery.ops.Substring
 
    Parameters:
    
 
      
-
    • col (str) – Name of column which has string, where substring needs
+
    • col (str) – Name of column which has string, where substring needs
 to be extracted.
      • 
-
    • start_index (int) – Start index of substring.
      • 
-
    • stop_index (int) – Stop index of substring.
      • 
+
    • start_index (int) – Start index of substring.
      • 
+
    • stop_index (int) – Stop index of substring.
      • 
 
    • new_col_name – Name of the new column with extracted substring.
      • 
 
    
 
    
@@ -258,7 +258,7 @@ 
    cycquery.ops.Substring
    Process the table.
    
 
    
 
    Parameters:
    
-
    table (Union[Select, Subquery, Table, DBTable]) – Table on which to perform the operation.
    
+
    table (Union[Select, Subquery, Table, DBTable]) – Table on which to perform the operation.
    
 
    
 
    Returns:
    
 
    Processed table.
    
diff --git a/reference/api/_autosummary/cycquery.ops.Trim.html b/reference/api/_autosummary/cycquery.ops.Trim.html
index 25d4003..e74743b 100644
--- a/reference/api/_autosummary/cycquery.ops.Trim.html
+++ b/reference/api/_autosummary/cycquery.ops.Trim.html
@@ -235,8 +235,8 @@ 
    cycquery.ops.Trim
 
    Parameters:
    
 
    
 
    
@@ -259,7 +259,7 @@ 
    cycquery.ops.Trim
 
    Parameters:
    
-
    table (Union[Select, Subquery, Table, DBTable]) – Table on which to perform the operation.
    
+
    table (Union[Select, Subquery, Table, DBTable]) – Table on which to perform the operation.
    
 
    
 
    Returns:
    
 
    Processed table.
    
diff --git a/reference/api/_autosummary/cycquery.ops.Union.html b/reference/api/_autosummary/cycquery.ops.Union.html
index 5202a35..cb7badd 100644
--- a/reference/api/_autosummary/cycquery.ops.Union.html
+++ b/reference/api/_autosummary/cycquery.ops.Union.html
@@ -235,8 +235,8 @@ 
    cycquery.ops.Union
 
    Parameters:
    
 
    
 
    
 
    
@@ -256,7 +256,7 @@ 
    cycquery.ops.Union
 
    Parameters:
    
-
    table (Union[Select, Subquery, Table, DBTable]) – Table on which to perform the operation.
    
+
    table (Union[Select, Subquery, Table, DBTable]) – Table on which to perform the operation.
    
 
    
 
    Returns:
    
 
    Processed table.
    
diff --git a/searchindex.js b/searchindex.js
index 3a66c90..117b997 100644
--- a/searchindex.js
+++ b/searchindex.js
@@ -1 +1 @@
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Get all female patients discharged in 2014 (limit to 100 rows).": [[64, "Example-1.-Get-all-female-patients-discharged-in-2014-(limit-to-100-rows)."]], "Example 2. Get all patient encounters with diagnoses (schizophrenia in diagnosisstring), discharged in the year 2015.": [[64, "Example-2.-Get-all-patient-encounters-with-diagnoses-(schizophrenia-in-diagnosisstring),-discharged-in-the-year-2015."]], "Example 3. Get potassium lab tests for patients discharged in the year 2014, for all teaching hospitals.": [[64, "Example-3.-Get-potassium-lab-tests-for-patients-discharged-in-the-year-2014,-for-all-teaching-hospitals."]], "Example 4. Get glucose medications (substring search) for female patients discharged in 2014.": [[64, "Example-4.-Get-glucose-medications-(substring-search)-for-female-patients-discharged-in-2014."]], "GEMINI tutorial": [[65, "GEMINI-tutorial"]], "Imports and instantiate GEMINIQuerier.": [[65, "Imports-and-instantiate-GEMINIQuerier."]], "Example 1a. Create a table with only one hospitalization per patient, keeping the most recent encounter for each patient. Sort the dataset by patient_id_hashed and discharge_date_time, and then keep the recent record.": [[65, "Example-1a.-Create-a-table-with-only-one-hospitalization-per-patient,-keeping-the-most-recent-encounter-for-each-patient.-Sort-the-dataset-by-patient_id_hashed-and-discharge_date_time,-and-then-keep-the-recent-record."]], "Example 1b. From the above set of encounters, take a subset of patients who were discharged between April 1, 2015 and March 31, 2016.": [[65, "Example-1b.-From-the-above-set-of-encounters,-take-a-subset-of-patients-who-were-discharged-between-April-1,-2015-and-March-31,-2016."]], "Example 1c. From the above set of encounters, get the total number of admissions for each hospital.": [[65, "Example-1c.-From-the-above-set-of-encounters,-get-the-total-number-of-admissions-for-each-hospital."]], "Example 2a. How many sodium tests were placed between Apr 1, 2015 and May 31, 2015 at hospital 101?": [[65, "Example-2a.-How-many-sodium-tests-were-placed-between-Apr-1,-2015-and-May-31,-2015-at-hospital-101?"]], "MIMIC-III tutorial": [[66, "MIMIC-III-tutorial"]], "Imports and instantiate MIMICIIIQuerier": [[66, "Imports-and-instantiate-MIMICIIIQuerier"]], "Example 1. Get all male patients with a mortality outcome.": [[66, "Example-1.-Get-all-male-patients-with-a-mortality-outcome."]], "Example 2. Get all female patient encounters with diagnoses (gastroenteritis in ICD-9 long title).": [[66, "Example-2.-Get-all-female-patient-encounters-with-diagnoses-(gastroenteritis-in-ICD-9-long-title)."]], "Example 3. Get potassium lab tests for female patients.": [[66, "Example-3.-Get-potassium-lab-tests-for-female-patients."]], "Example 4. Get AaDO2 carevue chart events for male patients that have a valuenum of less than 20.": [[66, "Example-4.-Get-AaDO2-carevue-chart-events-for-male-patients-that-have-a-valuenum-of-less-than-20."]], "MIMIC-IV tutorial": [[67, "MIMIC-IV-tutorial"]], "Imports and instantiate MIMICIVQuerier": [[67, "Imports-and-instantiate-MIMICIVQuerier"]], "Example 1. Get all patient admissions from 2021 or later (approx year of admission)": [[67, "Example-1.-Get-all-patient-admissions-from-2021-or-later-(approx-year-of-admission)"]], "Example 2. Get all patient encounters with diagnoses (schizophrenia in ICD-10 long title), in the year 2015.": [[67, "Example-2.-Get-all-patient-encounters-with-diagnoses-(schizophrenia-in-ICD-10-long-title),-in-the-year-2015."]], "Example 3. Advanced - uses ConditionRegexMatch from cyclops.query.ops. Get all patient encounters with diagnoses (ICD-9 long title contains schizophrenia and chronic ), in the year 2015.": [[67, "Example-3.-Advanced---uses-ConditionRegexMatch-from-cyclops.query.ops.-Get-all-patient-encounters-with-diagnoses-(ICD-9-long-title-contains-schizophrenia-and-chronic-),-in-the-year-2015."]], "Example 4. Get routine vital signs for patients from year 2015.": [[67, "Example-4.-Get-routine-vital-signs-for-patients-from-year-2015."]], "Example 5. Get hemoglobin lab tests for patients from year 2009.": [[67, "Example-5.-Get-hemoglobin-lab-tests-for-patients-from-year-2009."]], "Example 6. Get radiology reports and filter on keywords lymphadenopathy and infectious occurring together from year 2009.": [[67, "Example-6.-Get-radiology-reports-and-filter-on-keywords-lymphadenopathy-and-infectious-occurring-together-from-year-2009."]], "Example 7. Get all female patient encounters from year 2015, and return batches partitioned and indexed on subject_id.": [[67, "Example-7.-Get-all-female-patient-encounters-from-year-2015,-and-return-batches-partitioned-and-indexed-on-subject_id."]], "Example 8. Running a raw SQL string.": [[67, "Example-8.-Running-a-raw-SQL-string."]], "OMOP tutorial": [[68, "OMOP-tutorial"]], "Imports and instantiate OMOPQuerier.": [[68, "Imports-and-instantiate-OMOPQuerier."], [68, "id1"]], "Example 1. Get all patient visits in or after 2010.": [[68, "Example-1.-Get-all-patient-visits-in-or-after-2010."]], "Example 2. Get measurements for all visits in or after 2020.": [[68, "Example-2.-Get-measurements-for-all-visits-in-or-after-2020."]], "Example 1. Get all patient visits that ended in a mortality outcome in or after 2010.": [[68, "Example-1.-Get-all-patient-visits-that-ended-in-a-mortality-outcome-in-or-after-2010."]], "Example 2. Get all measurements for female patient visits with sepsis diagnoses, that ended in a mortality outcome.": [[68, "Example-2.-Get-all-measurements-for-female-patient-visits-with-sepsis-diagnoses,-that-ended-in-a-mortality-outcome."]]}, "indexentries": {"cycquery.base": [[4, "module-cycquery.base"]], "module": [[4, "module-cycquery.base"], [6, "module-cycquery.eicu"], [8, "module-cycquery.gemini"], [10, "module-cycquery.interface"], [12, "module-cycquery.mimiciii"], [14, "module-cycquery.mimiciv"], [16, "module-cycquery.omop"], [18, "module-cycquery.ops"], [62, "module-cycquery"]], "datasetquerier (class in cycquery.base)": [[5, "cycquery.base.DatasetQuerier"]], "db (datasetquerier attribute)": [[5, "cycquery.base.DatasetQuerier.db"]], "get_table() (datasetquerier method)": [[5, "cycquery.base.DatasetQuerier.get_table"]], "list_columns() (datasetquerier method)": [[5, "cycquery.base.DatasetQuerier.list_columns"]], "list_custom_tables() (datasetquerier method)": [[5, "cycquery.base.DatasetQuerier.list_custom_tables"]], "list_schemas() (datasetquerier method)": [[5, "cycquery.base.DatasetQuerier.list_schemas"]], "list_tables() (datasetquerier method)": [[5, "cycquery.base.DatasetQuerier.list_tables"]], "cycquery.eicu": [[6, "module-cycquery.eicu"]], "eicuquerier (class in cycquery.eicu)": [[7, "cycquery.eicu.EICUQuerier"]], "get_table() (eicuquerier method)": [[7, "cycquery.eicu.EICUQuerier.get_table"]], "list_columns() (eicuquerier method)": [[7, "cycquery.eicu.EICUQuerier.list_columns"]], "list_custom_tables() (eicuquerier method)": [[7, "cycquery.eicu.EICUQuerier.list_custom_tables"]], "list_schemas() (eicuquerier method)": [[7, "cycquery.eicu.EICUQuerier.list_schemas"]], "list_tables() (eicuquerier method)": [[7, "cycquery.eicu.EICUQuerier.list_tables"]], "cycquery.gemini": [[8, "module-cycquery.gemini"]], "geminiquerier (class in cycquery.gemini)": [[9, "cycquery.gemini.GEMINIQuerier"]], "care_units() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.care_units"]], "diagnoses() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.diagnoses"]], "get_table() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.get_table"]], "imaging() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.imaging"]], "ip_admin() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.ip_admin"]], "list_columns() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.list_columns"]], "list_custom_tables() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.list_custom_tables"]], "list_schemas() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.list_schemas"]], "list_tables() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.list_tables"]], "room_transfer() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.room_transfer"]], "cycquery.interface": [[10, "module-cycquery.interface"]], "queryinterface (class in cycquery.interface)": [[11, "cycquery.interface.QueryInterface"]], "__init__() (queryinterface method)": [[11, "cycquery.interface.QueryInterface.__init__"]], "clear_data() (queryinterface method)": [[11, "cycquery.interface.QueryInterface.clear_data"]], "data (queryinterface property)": [[11, "cycquery.interface.QueryInterface.data"]], "join() (queryinterface method)": [[11, "cycquery.interface.QueryInterface.join"]], "ops() (queryinterface method)": [[11, "cycquery.interface.QueryInterface.ops"]], "run() (queryinterface method)": [[11, "cycquery.interface.QueryInterface.run"]], "save() (queryinterface method)": [[11, "cycquery.interface.QueryInterface.save"]], "union() (queryinterface method)": [[11, "cycquery.interface.QueryInterface.union"]], "union_all() (queryinterface method)": [[11, "cycquery.interface.QueryInterface.union_all"]], "cycquery.mimiciii": [[12, "module-cycquery.mimiciii"]], "mimiciiiquerier (class in cycquery.mimiciii)": [[13, "cycquery.mimiciii.MIMICIIIQuerier"]], "chartevents() (mimiciiiquerier method)": [[13, "cycquery.mimiciii.MIMICIIIQuerier.chartevents"]], "diagnoses() (mimiciiiquerier method)": [[13, "cycquery.mimiciii.MIMICIIIQuerier.diagnoses"]], "get_table() (mimiciiiquerier method)": [[13, "cycquery.mimiciii.MIMICIIIQuerier.get_table"]], "labevents() (mimiciiiquerier method)": [[13, "cycquery.mimiciii.MIMICIIIQuerier.labevents"]], "list_columns() (mimiciiiquerier method)": [[13, "cycquery.mimiciii.MIMICIIIQuerier.list_columns"]], "list_custom_tables() (mimiciiiquerier method)": [[13, "cycquery.mimiciii.MIMICIIIQuerier.list_custom_tables"]], "list_schemas() (mimiciiiquerier method)": [[13, "cycquery.mimiciii.MIMICIIIQuerier.list_schemas"]], "list_tables() (mimiciiiquerier method)": [[13, "cycquery.mimiciii.MIMICIIIQuerier.list_tables"]], "cycquery.mimiciv": [[14, "module-cycquery.mimiciv"]], "mimicivquerier (class in cycquery.mimiciv)": [[15, "cycquery.mimiciv.MIMICIVQuerier"]], "chartevents() (mimicivquerier method)": [[15, "cycquery.mimiciv.MIMICIVQuerier.chartevents"]], "diagnoses() (mimicivquerier method)": [[15, "cycquery.mimiciv.MIMICIVQuerier.diagnoses"]], "get_table() (mimicivquerier method)": [[15, "cycquery.mimiciv.MIMICIVQuerier.get_table"]], "labevents() (mimicivquerier method)": [[15, "cycquery.mimiciv.MIMICIVQuerier.labevents"]], "list_columns() (mimicivquerier method)": [[15, "cycquery.mimiciv.MIMICIVQuerier.list_columns"]], "list_custom_tables() (mimicivquerier method)": [[15, "cycquery.mimiciv.MIMICIVQuerier.list_custom_tables"]], "list_schemas() (mimicivquerier method)": [[15, "cycquery.mimiciv.MIMICIVQuerier.list_schemas"]], "list_tables() (mimicivquerier method)": [[15, "cycquery.mimiciv.MIMICIVQuerier.list_tables"]], "patients() (mimicivquerier method)": [[15, "cycquery.mimiciv.MIMICIVQuerier.patients"]], "cycquery.omop": [[16, "module-cycquery.omop"]], "omopquerier (class in cycquery.omop)": [[17, "cycquery.omop.OMOPQuerier"]], "get_table() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.get_table"]], "list_columns() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.list_columns"]], "list_custom_tables() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.list_custom_tables"]], "list_schemas() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.list_schemas"]], "list_tables() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.list_tables"]], "map_concept_ids_to_name() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.map_concept_ids_to_name"]], "measurement() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.measurement"]], "observation() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.observation"]], "person() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.person"]], "visit_detail() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.visit_detail"]], "visit_occurrence() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.visit_occurrence"]], "cycquery.ops": [[18, "module-cycquery.ops"]], "addcolumn (class in cycquery.ops)": [[19, "cycquery.ops.AddColumn"]], "__call__() (addcolumn method)": [[19, "cycquery.ops.AddColumn.__call__"]], "adddeltacolumn (class in cycquery.ops)": [[20, "cycquery.ops.AddDeltaColumn"]], "__call__() (adddeltacolumn method)": [[20, "cycquery.ops.AddDeltaColumn.__call__"]], "adddeltaconstant (class in cycquery.ops)": [[21, "cycquery.ops.AddDeltaConstant"]], "__call__() (adddeltaconstant method)": [[21, "cycquery.ops.AddDeltaConstant.__call__"]], "addnumeric (class in cycquery.ops)": [[22, "cycquery.ops.AddNumeric"]], "__call__() (addnumeric method)": [[22, "cycquery.ops.AddNumeric.__call__"]], "and (class in cycquery.ops)": [[23, "cycquery.ops.And"]], "__call__() (and method)": [[23, "cycquery.ops.And.__call__"]], "apply (class in cycquery.ops)": [[24, "cycquery.ops.Apply"]], "__call__() (apply method)": [[24, "cycquery.ops.Apply.__call__"]], "cast (class in cycquery.ops)": [[25, "cycquery.ops.Cast"]], "__call__() (cast method)": [[25, "cycquery.ops.Cast.__call__"]], "conditionafterdate (class in cycquery.ops)": [[26, "cycquery.ops.ConditionAfterDate"]], "__call__() (conditionafterdate method)": [[26, "cycquery.ops.ConditionAfterDate.__call__"]], "conditionbeforedate (class in cycquery.ops)": [[27, "cycquery.ops.ConditionBeforeDate"]], "__call__() (conditionbeforedate method)": [[27, "cycquery.ops.ConditionBeforeDate.__call__"]], "conditionendswith (class in cycquery.ops)": [[28, "cycquery.ops.ConditionEndsWith"]], "__call__() (conditionendswith method)": [[28, "cycquery.ops.ConditionEndsWith.__call__"]], "conditionequals (class in cycquery.ops)": [[29, "cycquery.ops.ConditionEquals"]], "__call__() (conditionequals method)": [[29, "cycquery.ops.ConditionEquals.__call__"]], "conditiongreaterthan (class in cycquery.ops)": [[30, "cycquery.ops.ConditionGreaterThan"]], "__call__() (conditiongreaterthan method)": [[30, "cycquery.ops.ConditionGreaterThan.__call__"]], "conditionin (class in cycquery.ops)": [[31, "cycquery.ops.ConditionIn"]], "__call__() (conditionin method)": [[31, "cycquery.ops.ConditionIn.__call__"]], "conditioninmonths (class in cycquery.ops)": [[32, "cycquery.ops.ConditionInMonths"]], "__call__() (conditioninmonths method)": [[32, "cycquery.ops.ConditionInMonths.__call__"]], "conditioninyears (class in cycquery.ops)": [[33, "cycquery.ops.ConditionInYears"]], "__call__() (conditioninyears method)": [[33, "cycquery.ops.ConditionInYears.__call__"]], "conditionlessthan (class in cycquery.ops)": [[34, "cycquery.ops.ConditionLessThan"]], "__call__() (conditionlessthan method)": [[34, "cycquery.ops.ConditionLessThan.__call__"]], "conditionlike (class in cycquery.ops)": [[35, "cycquery.ops.ConditionLike"]], "__call__() (conditionlike method)": [[35, "cycquery.ops.ConditionLike.__call__"]], "conditionregexmatch (class in cycquery.ops)": [[36, "cycquery.ops.ConditionRegexMatch"]], "__call__() (conditionregexmatch method)": [[36, "cycquery.ops.ConditionRegexMatch.__call__"]], 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[[57, "cycquery.ops.ReorderAfter"]], "__call__() (reorderafter method)": [[57, "cycquery.ops.ReorderAfter.__call__"]], "sequential (class in cycquery.ops)": [[58, "cycquery.ops.Sequential"]], "__add__() (sequential method)": [[58, "cycquery.ops.Sequential.__add__"]], "__call__() (sequential method)": [[58, "cycquery.ops.Sequential.__call__"]], "__init__() (sequential method)": [[58, "cycquery.ops.Sequential.__init__"]], "append() (sequential method)": [[58, "cycquery.ops.Sequential.append"]], "extend() (sequential method)": [[58, "cycquery.ops.Sequential.extend"]], "insert() (sequential method)": [[58, "cycquery.ops.Sequential.insert"]], "pop() (sequential method)": [[58, "cycquery.ops.Sequential.pop"]], "substring (class in cycquery.ops)": [[59, "cycquery.ops.Substring"]], "__call__() (substring method)": [[59, "cycquery.ops.Substring.__call__"]], "trim (class in cycquery.ops)": [[60, "cycquery.ops.Trim"]], "__call__() (trim method)": [[60, "cycquery.ops.Trim.__call__"]], "union 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\ No newline at end of file
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"cycquery.ops.ConditionEndsWith": [[28, "cycquery-ops-conditionendswith"]], "cycquery.ops.ConditionEquals": [[29, "cycquery-ops-conditionequals"]], "cycquery.ops.ConditionGreaterThan": [[30, "cycquery-ops-conditiongreaterthan"]], "cycquery.ops.ConditionIn": [[31, "cycquery-ops-conditionin"]], "cycquery.ops.ConditionInMonths": [[32, "cycquery-ops-conditioninmonths"]], "cycquery.ops.ConditionInYears": [[33, "cycquery-ops-conditioninyears"]], "cycquery.ops.ConditionLessThan": [[34, "cycquery-ops-conditionlessthan"]], "cycquery.ops.ConditionLike": [[35, "cycquery-ops-conditionlike"]], "cycquery.ops.ConditionRegexMatch": [[36, "cycquery-ops-conditionregexmatch"]], "cycquery.ops.ConditionStartsWith": [[37, "cycquery-ops-conditionstartswith"]], "cycquery.ops.ConditionSubstring": [[38, "cycquery-ops-conditionsubstring"]], "cycquery.ops.Count": [[39, "cycquery-ops-count"]], "cycquery.ops.Distinct": [[40, "cycquery-ops-distinct"]], "cycquery.ops.Drop": [[41, "cycquery-ops-drop"]], "cycquery.ops.DropEmpty": [[42, "cycquery-ops-dropempty"]], "cycquery.ops.DropNulls": [[43, "cycquery-ops-dropnulls"]], "cycquery.ops.ExtractTimestampComponent": [[44, "cycquery-ops-extracttimestampcomponent"]], "cycquery.ops.FillNull": [[45, "cycquery-ops-fillnull"]], "cycquery.ops.GroupByAggregate": [[46, "cycquery-ops-groupbyaggregate"]], "cycquery.ops.Join": [[47, "cycquery-ops-join"]], "cycquery.ops.Keep": [[48, "cycquery-ops-keep"]], "cycquery.ops.Limit": [[49, "cycquery-ops-limit"]], "cycquery.ops.Literal": [[50, "cycquery-ops-literal"]], "cycquery.ops.Or": [[51, "cycquery-ops-or"]], "cycquery.ops.OrderBy": [[52, "cycquery-ops-orderby"]], "cycquery.ops.QueryOp": [[53, "cycquery-ops-queryop"]], "cycquery.ops.RandomizeOrder": [[54, "cycquery-ops-randomizeorder"]], "cycquery.ops.Rename": [[55, "cycquery-ops-rename"]], "cycquery.ops.Reorder": [[56, "cycquery-ops-reorder"]], "cycquery.ops.ReorderAfter": [[57, "cycquery-ops-reorderafter"]], "cycquery.ops.Sequential": [[58, "cycquery-ops-sequential"]], "cycquery.ops.Substring": [[59, "cycquery-ops-substring"]], "cycquery.ops.Trim": [[60, "cycquery-ops-trim"]], "cycquery.ops.Union": [[61, "cycquery-ops-union"]], "cycquery": [[62, "module-cycquery"]], "dataset APIs": [[62, "dataset-apis"]], "Tutorials": [[63, "tutorials"]], "eICU-CRD tutorial": [[64, "eICU-CRD-tutorial"]], "Imports and instantiate EICUQuerier": [[64, "Imports-and-instantiate-EICUQuerier"]], "Example 1. Get all female patients discharged in 2014 (limit to 100 rows).": [[64, "Example-1.-Get-all-female-patients-discharged-in-2014-(limit-to-100-rows)."]], "Example 2. Get all patient encounters with diagnoses (schizophrenia in diagnosisstring), discharged in the year 2015.": [[64, "Example-2.-Get-all-patient-encounters-with-diagnoses-(schizophrenia-in-diagnosisstring),-discharged-in-the-year-2015."]], "Example 3. Get potassium lab tests for patients discharged in the year 2014, for all teaching hospitals.": [[64, "Example-3.-Get-potassium-lab-tests-for-patients-discharged-in-the-year-2014,-for-all-teaching-hospitals."]], "Example 4. Get glucose medications (substring search) for female patients discharged in 2014.": [[64, "Example-4.-Get-glucose-medications-(substring-search)-for-female-patients-discharged-in-2014."]], "GEMINI tutorial": [[65, "GEMINI-tutorial"]], "Imports and instantiate GEMINIQuerier.": [[65, "Imports-and-instantiate-GEMINIQuerier."]], "Example 1a. Create a table with only one hospitalization per patient, keeping the most recent encounter for each patient. Sort the dataset by patient_id_hashed and discharge_date_time, and then keep the recent record.": [[65, "Example-1a.-Create-a-table-with-only-one-hospitalization-per-patient,-keeping-the-most-recent-encounter-for-each-patient.-Sort-the-dataset-by-patient_id_hashed-and-discharge_date_time,-and-then-keep-the-recent-record."]], "Example 1b. From the above set of encounters, take a subset of patients who were discharged between April 1, 2015 and March 31, 2016.": [[65, "Example-1b.-From-the-above-set-of-encounters,-take-a-subset-of-patients-who-were-discharged-between-April-1,-2015-and-March-31,-2016."]], "Example 1c. From the above set of encounters, get the total number of admissions for each hospital.": [[65, "Example-1c.-From-the-above-set-of-encounters,-get-the-total-number-of-admissions-for-each-hospital."]], "Example 2a. How many sodium tests were placed between Apr 1, 2015 and May 31, 2015 at hospital 101?": [[65, "Example-2a.-How-many-sodium-tests-were-placed-between-Apr-1,-2015-and-May-31,-2015-at-hospital-101?"]], "MIMIC-III tutorial": [[66, "MIMIC-III-tutorial"]], "Imports and instantiate MIMICIIIQuerier": [[66, "Imports-and-instantiate-MIMICIIIQuerier"]], "Example 1. Get all male patients with a mortality outcome.": [[66, "Example-1.-Get-all-male-patients-with-a-mortality-outcome."]], "Example 2. Get all female patient encounters with diagnoses (gastroenteritis in ICD-9 long title).": [[66, "Example-2.-Get-all-female-patient-encounters-with-diagnoses-(gastroenteritis-in-ICD-9-long-title)."]], "Example 3. Get potassium lab tests for female patients.": [[66, "Example-3.-Get-potassium-lab-tests-for-female-patients."]], "Example 4. Get AaDO2 carevue chart events for male patients that have a valuenum of less than 20.": [[66, "Example-4.-Get-AaDO2-carevue-chart-events-for-male-patients-that-have-a-valuenum-of-less-than-20."]], "MIMIC-IV tutorial": [[67, "MIMIC-IV-tutorial"]], "Imports and instantiate MIMICIVQuerier": [[67, "Imports-and-instantiate-MIMICIVQuerier"]], "Example 1. Get all patient admissions from 2021 or later (approx year of admission)": [[67, "Example-1.-Get-all-patient-admissions-from-2021-or-later-(approx-year-of-admission)"]], "Example 2. Get all patient encounters with diagnoses (schizophrenia in ICD-10 long title), in the year 2015.": [[67, "Example-2.-Get-all-patient-encounters-with-diagnoses-(schizophrenia-in-ICD-10-long-title),-in-the-year-2015."]], "Example 3. Advanced - uses ConditionRegexMatch from cyclops.query.ops. Get all patient encounters with diagnoses (ICD-9 long title contains schizophrenia and chronic ), in the year 2015.": [[67, "Example-3.-Advanced---uses-ConditionRegexMatch-from-cyclops.query.ops.-Get-all-patient-encounters-with-diagnoses-(ICD-9-long-title-contains-schizophrenia-and-chronic-),-in-the-year-2015."]], "Example 4. Get routine vital signs for patients from year 2015.": [[67, "Example-4.-Get-routine-vital-signs-for-patients-from-year-2015."]], "Example 5. Get hemoglobin lab tests for patients from year 2009.": [[67, "Example-5.-Get-hemoglobin-lab-tests-for-patients-from-year-2009."]], "Example 6. Get radiology reports and filter on keywords lymphadenopathy and infectious occurring together from year 2009.": [[67, "Example-6.-Get-radiology-reports-and-filter-on-keywords-lymphadenopathy-and-infectious-occurring-together-from-year-2009."]], "Example 7. Get all female patient encounters from year 2015, and return batches partitioned and indexed on subject_id.": [[67, "Example-7.-Get-all-female-patient-encounters-from-year-2015,-and-return-batches-partitioned-and-indexed-on-subject_id."]], "Example 8. Running a raw SQL string.": [[67, "Example-8.-Running-a-raw-SQL-string."]], "OMOP tutorial": [[68, "OMOP-tutorial"]], "Imports and instantiate OMOPQuerier.": [[68, "Imports-and-instantiate-OMOPQuerier."], [68, "id1"]], "Example 1. Get all patient visits in or after 2010.": [[68, "Example-1.-Get-all-patient-visits-in-or-after-2010."]], "Example 2. Get measurements for all visits in or after 2020.": [[68, "Example-2.-Get-measurements-for-all-visits-in-or-after-2020."]], "Example 1. Get all patient visits that ended in a mortality outcome in or after 2010.": [[68, "Example-1.-Get-all-patient-visits-that-ended-in-a-mortality-outcome-in-or-after-2010."]], "Example 2. Get all measurements for female patient visits with sepsis diagnoses, that ended in a mortality outcome.": [[68, "Example-2.-Get-all-measurements-for-female-patient-visits-with-sepsis-diagnoses,-that-ended-in-a-mortality-outcome."]]}, "indexentries": {"cycquery.base": [[4, "module-cycquery.base"]], "module": [[4, "module-cycquery.base"], [6, "module-cycquery.eicu"], [8, "module-cycquery.gemini"], [10, "module-cycquery.interface"], [12, "module-cycquery.mimiciii"], [14, "module-cycquery.mimiciv"], [16, "module-cycquery.omop"], [18, "module-cycquery.ops"], [62, "module-cycquery"]], "datasetquerier (class in cycquery.base)": [[5, "cycquery.base.DatasetQuerier"]], "db (datasetquerier attribute)": [[5, "cycquery.base.DatasetQuerier.db"]], "get_table() (datasetquerier method)": [[5, "cycquery.base.DatasetQuerier.get_table"]], "list_columns() (datasetquerier method)": [[5, "cycquery.base.DatasetQuerier.list_columns"]], "list_custom_tables() (datasetquerier method)": [[5, "cycquery.base.DatasetQuerier.list_custom_tables"]], "list_schemas() (datasetquerier method)": [[5, "cycquery.base.DatasetQuerier.list_schemas"]], "list_tables() (datasetquerier method)": [[5, "cycquery.base.DatasetQuerier.list_tables"]], "cycquery.eicu": [[6, "module-cycquery.eicu"]], "eicuquerier (class in cycquery.eicu)": [[7, "cycquery.eicu.EICUQuerier"]], "get_table() (eicuquerier method)": [[7, "cycquery.eicu.EICUQuerier.get_table"]], "list_columns() (eicuquerier method)": [[7, "cycquery.eicu.EICUQuerier.list_columns"]], "list_custom_tables() (eicuquerier method)": [[7, "cycquery.eicu.EICUQuerier.list_custom_tables"]], "list_schemas() (eicuquerier method)": [[7, "cycquery.eicu.EICUQuerier.list_schemas"]], "list_tables() (eicuquerier method)": [[7, "cycquery.eicu.EICUQuerier.list_tables"]], "cycquery.gemini": [[8, "module-cycquery.gemini"]], "geminiquerier (class in cycquery.gemini)": [[9, "cycquery.gemini.GEMINIQuerier"]], "care_units() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.care_units"]], "diagnoses() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.diagnoses"]], "get_table() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.get_table"]], "imaging() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.imaging"]], "ip_admin() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.ip_admin"]], "list_columns() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.list_columns"]], "list_custom_tables() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.list_custom_tables"]], "list_schemas() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.list_schemas"]], "list_tables() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.list_tables"]], "room_transfer() (geminiquerier method)": [[9, "cycquery.gemini.GEMINIQuerier.room_transfer"]], "cycquery.interface": [[10, "module-cycquery.interface"]], "queryinterface (class in cycquery.interface)": [[11, "cycquery.interface.QueryInterface"]], "__init__() (queryinterface method)": [[11, "cycquery.interface.QueryInterface.__init__"]], "clear_data() (queryinterface method)": [[11, "cycquery.interface.QueryInterface.clear_data"]], "data (queryinterface property)": [[11, "cycquery.interface.QueryInterface.data"]], "join() (queryinterface method)": [[11, "cycquery.interface.QueryInterface.join"]], "ops() (queryinterface method)": [[11, "cycquery.interface.QueryInterface.ops"]], "run() (queryinterface method)": [[11, "cycquery.interface.QueryInterface.run"]], "save() (queryinterface method)": [[11, "cycquery.interface.QueryInterface.save"]], "union() (queryinterface method)": [[11, "cycquery.interface.QueryInterface.union"]], "union_all() (queryinterface method)": [[11, "cycquery.interface.QueryInterface.union_all"]], "cycquery.mimiciii": [[12, "module-cycquery.mimiciii"]], "mimiciiiquerier (class in cycquery.mimiciii)": [[13, "cycquery.mimiciii.MIMICIIIQuerier"]], "chartevents() (mimiciiiquerier method)": [[13, "cycquery.mimiciii.MIMICIIIQuerier.chartevents"]], "diagnoses() (mimiciiiquerier method)": [[13, "cycquery.mimiciii.MIMICIIIQuerier.diagnoses"]], "get_table() (mimiciiiquerier method)": [[13, "cycquery.mimiciii.MIMICIIIQuerier.get_table"]], "labevents() (mimiciiiquerier method)": [[13, "cycquery.mimiciii.MIMICIIIQuerier.labevents"]], "list_columns() (mimiciiiquerier method)": [[13, "cycquery.mimiciii.MIMICIIIQuerier.list_columns"]], "list_custom_tables() (mimiciiiquerier method)": [[13, "cycquery.mimiciii.MIMICIIIQuerier.list_custom_tables"]], "list_schemas() (mimiciiiquerier method)": [[13, "cycquery.mimiciii.MIMICIIIQuerier.list_schemas"]], "list_tables() (mimiciiiquerier method)": [[13, "cycquery.mimiciii.MIMICIIIQuerier.list_tables"]], "cycquery.mimiciv": [[14, "module-cycquery.mimiciv"]], "mimicivquerier (class in cycquery.mimiciv)": [[15, "cycquery.mimiciv.MIMICIVQuerier"]], "chartevents() (mimicivquerier method)": [[15, "cycquery.mimiciv.MIMICIVQuerier.chartevents"]], "diagnoses() (mimicivquerier method)": [[15, "cycquery.mimiciv.MIMICIVQuerier.diagnoses"]], "get_table() (mimicivquerier method)": [[15, "cycquery.mimiciv.MIMICIVQuerier.get_table"]], "labevents() (mimicivquerier method)": [[15, "cycquery.mimiciv.MIMICIVQuerier.labevents"]], "list_columns() (mimicivquerier method)": [[15, "cycquery.mimiciv.MIMICIVQuerier.list_columns"]], "list_custom_tables() (mimicivquerier method)": [[15, "cycquery.mimiciv.MIMICIVQuerier.list_custom_tables"]], "list_schemas() (mimicivquerier method)": [[15, "cycquery.mimiciv.MIMICIVQuerier.list_schemas"]], "list_tables() (mimicivquerier method)": [[15, "cycquery.mimiciv.MIMICIVQuerier.list_tables"]], "patients() (mimicivquerier method)": [[15, "cycquery.mimiciv.MIMICIVQuerier.patients"]], "cycquery.omop": [[16, "module-cycquery.omop"]], "omopquerier (class in cycquery.omop)": [[17, "cycquery.omop.OMOPQuerier"]], "get_table() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.get_table"]], "list_columns() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.list_columns"]], "list_custom_tables() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.list_custom_tables"]], "list_schemas() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.list_schemas"]], "list_tables() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.list_tables"]], "map_concept_ids_to_name() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.map_concept_ids_to_name"]], "measurement() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.measurement"]], "observation() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.observation"]], "person() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.person"]], "visit_detail() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.visit_detail"]], "visit_occurrence() (omopquerier method)": [[17, "cycquery.omop.OMOPQuerier.visit_occurrence"]], "cycquery.ops": [[18, "module-cycquery.ops"]], "addcolumn (class in cycquery.ops)": [[19, "cycquery.ops.AddColumn"]], "__call__() (addcolumn method)": [[19, "cycquery.ops.AddColumn.__call__"]], "adddeltacolumn (class in cycquery.ops)": [[20, "cycquery.ops.AddDeltaColumn"]], "__call__() (adddeltacolumn method)": [[20, "cycquery.ops.AddDeltaColumn.__call__"]], "adddeltaconstant (class in cycquery.ops)": [[21, "cycquery.ops.AddDeltaConstant"]], "__call__() (adddeltaconstant method)": [[21, "cycquery.ops.AddDeltaConstant.__call__"]], "addnumeric (class in cycquery.ops)": [[22, "cycquery.ops.AddNumeric"]], "__call__() (addnumeric method)": [[22, "cycquery.ops.AddNumeric.__call__"]], "and (class in cycquery.ops)": [[23, "cycquery.ops.And"]], "__call__() (and method)": [[23, "cycquery.ops.And.__call__"]], "apply (class in cycquery.ops)": [[24, "cycquery.ops.Apply"]], "__call__() (apply method)": [[24, "cycquery.ops.Apply.__call__"]], "cast (class in cycquery.ops)": [[25, "cycquery.ops.Cast"]], "__call__() (cast method)": [[25, "cycquery.ops.Cast.__call__"]], "conditionafterdate (class in cycquery.ops)": [[26, "cycquery.ops.ConditionAfterDate"]], "__call__() (conditionafterdate method)": [[26, "cycquery.ops.ConditionAfterDate.__call__"]], "conditionbeforedate (class in cycquery.ops)": [[27, "cycquery.ops.ConditionBeforeDate"]], "__call__() (conditionbeforedate method)": [[27, "cycquery.ops.ConditionBeforeDate.__call__"]], "conditionendswith (class in cycquery.ops)": [[28, "cycquery.ops.ConditionEndsWith"]], "__call__() (conditionendswith method)": [[28, "cycquery.ops.ConditionEndsWith.__call__"]], "conditionequals (class in cycquery.ops)": [[29, "cycquery.ops.ConditionEquals"]], "__call__() (conditionequals method)": [[29, "cycquery.ops.ConditionEquals.__call__"]], "conditiongreaterthan (class in cycquery.ops)": [[30, "cycquery.ops.ConditionGreaterThan"]], "__call__() (conditiongreaterthan method)": [[30, "cycquery.ops.ConditionGreaterThan.__call__"]], "conditionin (class in cycquery.ops)": [[31, "cycquery.ops.ConditionIn"]], "__call__() (conditionin method)": [[31, "cycquery.ops.ConditionIn.__call__"]], "conditioninmonths (class in cycquery.ops)": [[32, "cycquery.ops.ConditionInMonths"]], "__call__() (conditioninmonths method)": [[32, "cycquery.ops.ConditionInMonths.__call__"]], "conditioninyears (class in cycquery.ops)": [[33, "cycquery.ops.ConditionInYears"]], "__call__() (conditioninyears method)": [[33, "cycquery.ops.ConditionInYears.__call__"]], "conditionlessthan (class in cycquery.ops)": [[34, "cycquery.ops.ConditionLessThan"]], "__call__() (conditionlessthan method)": [[34, "cycquery.ops.ConditionLessThan.__call__"]], "conditionlike (class in cycquery.ops)": [[35, "cycquery.ops.ConditionLike"]], "__call__() (conditionlike method)": [[35, "cycquery.ops.ConditionLike.__call__"]], "conditionregexmatch (class in cycquery.ops)": [[36, "cycquery.ops.ConditionRegexMatch"]], "__call__() (conditionregexmatch method)": [[36, "cycquery.ops.ConditionRegexMatch.__call__"]], "conditionstartswith (class in cycquery.ops)": [[37, "cycquery.ops.ConditionStartsWith"]], "__call__() (conditionstartswith method)": [[37, "cycquery.ops.ConditionStartsWith.__call__"]], "conditionsubstring (class in cycquery.ops)": [[38, "cycquery.ops.ConditionSubstring"]], "__call__() (conditionsubstring method)": [[38, "cycquery.ops.ConditionSubstring.__call__"]], "count (class in cycquery.ops)": [[39, "cycquery.ops.Count"]], "__call__() (count method)": [[39, "cycquery.ops.Count.__call__"]], "distinct (class in cycquery.ops)": [[40, "cycquery.ops.Distinct"]], "__call__() (distinct method)": [[40, "cycquery.ops.Distinct.__call__"]], "drop (class in cycquery.ops)": [[41, "cycquery.ops.Drop"]], "__call__() (drop method)": [[41, "cycquery.ops.Drop.__call__"]], "dropempty (class in cycquery.ops)": [[42, "cycquery.ops.DropEmpty"]], "__call__() (dropempty method)": [[42, "cycquery.ops.DropEmpty.__call__"]], "dropnulls (class in cycquery.ops)": [[43, "cycquery.ops.DropNulls"]], "__call__() (dropnulls method)": [[43, "cycquery.ops.DropNulls.__call__"]], "extracttimestampcomponent (class in cycquery.ops)": [[44, "cycquery.ops.ExtractTimestampComponent"]], "__call__() (extracttimestampcomponent method)": [[44, "cycquery.ops.ExtractTimestampComponent.__call__"]], "fillnull (class in cycquery.ops)": [[45, "cycquery.ops.FillNull"]], "__call__() (fillnull method)": [[45, "cycquery.ops.FillNull.__call__"]], "groupbyaggregate (class in cycquery.ops)": [[46, "cycquery.ops.GroupByAggregate"]], "__call__() (groupbyaggregate method)": [[46, "cycquery.ops.GroupByAggregate.__call__"]], "join (class in cycquery.ops)": [[47, "cycquery.ops.Join"]], "__call__() (join method)": [[47, "cycquery.ops.Join.__call__"]], "keep (class in cycquery.ops)": [[48, "cycquery.ops.Keep"]], "__call__() (keep method)": [[48, "cycquery.ops.Keep.__call__"]], "limit (class in cycquery.ops)": [[49, "cycquery.ops.Limit"]], "__call__() (limit method)": [[49, "cycquery.ops.Limit.__call__"]], "literal (class in cycquery.ops)": [[50, "cycquery.ops.Literal"]], "__call__() (literal method)": [[50, "cycquery.ops.Literal.__call__"]], "or (class in cycquery.ops)": [[51, "cycquery.ops.Or"]], "__call__() (or method)": [[51, "cycquery.ops.Or.__call__"]], "orderby (class in cycquery.ops)": [[52, "cycquery.ops.OrderBy"]], "__call__() (orderby method)": [[52, "cycquery.ops.OrderBy.__call__"]], "queryop (class in cycquery.ops)": [[53, "cycquery.ops.QueryOp"]], "__call__() (queryop method)": [[53, "cycquery.ops.QueryOp.__call__"]], "randomizeorder (class in cycquery.ops)": [[54, "cycquery.ops.RandomizeOrder"]], "__call__() (randomizeorder method)": [[54, "cycquery.ops.RandomizeOrder.__call__"]], "rename (class in cycquery.ops)": [[55, "cycquery.ops.Rename"]], "__call__() (rename method)": [[55, "cycquery.ops.Rename.__call__"]], "reorder (class in cycquery.ops)": [[56, "cycquery.ops.Reorder"]], "__call__() (reorder method)": [[56, "cycquery.ops.Reorder.__call__"]], "reorderafter (class in cycquery.ops)": [[57, "cycquery.ops.ReorderAfter"]], "__call__() (reorderafter method)": [[57, "cycquery.ops.ReorderAfter.__call__"]], "sequential (class in cycquery.ops)": [[58, "cycquery.ops.Sequential"]], "__add__() (sequential method)": [[58, "cycquery.ops.Sequential.__add__"]], "__call__() (sequential method)": [[58, "cycquery.ops.Sequential.__call__"]], "__init__() (sequential method)": [[58, "cycquery.ops.Sequential.__init__"]], "append() (sequential method)": [[58, "cycquery.ops.Sequential.append"]], "extend() (sequential method)": [[58, "cycquery.ops.Sequential.extend"]], "insert() (sequential method)": [[58, "cycquery.ops.Sequential.insert"]], "pop() (sequential method)": [[58, "cycquery.ops.Sequential.pop"]], "substring (class in cycquery.ops)": [[59, "cycquery.ops.Substring"]], "__call__() (substring method)": [[59, "cycquery.ops.Substring.__call__"]], "trim (class in cycquery.ops)": [[60, "cycquery.ops.Trim"]], "__call__() (trim method)": [[60, "cycquery.ops.Trim.__call__"]], "union (class in cycquery.ops)": [[61, "cycquery.ops.Union"]], "__call__() (union method)": [[61, "cycquery.ops.Union.__call__"]], "cycquery": [[62, "module-cycquery"]]}})
\ No newline at end of file
diff --git a/tutorials/eicu.html b/tutorials/eicu.html
index 9bd29cc..4deaa49 100644
--- a/tutorials/eicu.html
+++ b/tutorials/eicu.html
@@ -478,7 +478,7 @@ 
    Imports and instantiate 
 
    
 
    -2023-11-08 15:58:24,363 INFO cycquery.orm    - Database setup, ready to run queries!
+2023-11-23 22:37:47,310 INFO cycquery.orm    - Database setup, ready to run queries!
 
    
 
    
 
    
@@ -542,8 +542,8 @@ 
    Example 1. Get all female patients discharged in 2014 (limit to 100 rows).
 
    
 
    -2023-11-08 15:58:25,008 INFO cycquery.orm    - Query returned successfully!
-2023-11-08 15:58:25,009 INFO cycquery.utils.profile - Finished executing function run_query in 0.037633 s
+2023-11-23 22:37:48,180 INFO cycquery.orm    - Query returned successfully!
+2023-11-23 22:37:48,181 INFO cycquery.utils.profile - Finished executing function run_query in 0.052660 s
 
    
 
    
 
    
@@ -578,8 +578,8 @@ 
    Example 2. Get all patient encounters with diagnoses (
 
    -2023-11-08 15:58:25,109 INFO cycquery.orm    - Query returned successfully!
-2023-11-08 15:58:25,109 INFO cycquery.utils.profile - Finished executing function run_query in 0.085164 s
+2023-11-23 22:37:48,281 INFO cycquery.orm    - Query returned successfully!
+2023-11-23 22:37:48,282 INFO cycquery.utils.profile - Finished executing function run_query in 0.080187 s
    @@ -620,8 +620,8 @@

    Example 3. Get potassium lab tests for patients discharged in the year 2014, 

    -2023-11-08 15:58:25,170 INFO cycquery.orm    - Query returned successfully!
-2023-11-08 15:58:25,171 INFO cycquery.utils.profile - Finished executing function run_query in 0.039931 s
+2023-11-23 22:37:48,344 INFO cycquery.orm    - Query returned successfully!
+2023-11-23 22:37:48,346 INFO cycquery.utils.profile - Finished executing function run_query in 0.039138 s
    @@ -660,8 +660,8 @@

    Example 4. Get glucose medications (substring search) for female patients di 

    -2023-11-08 15:58:25,293 INFO cycquery.orm    - Query returned successfully!
-2023-11-08 15:58:25,294 INFO cycquery.utils.profile - Finished executing function run_query in 0.102749 s
+2023-11-23 22:37:48,542 INFO cycquery.orm    - Query returned successfully!
+2023-11-23 22:37:48,543 INFO cycquery.utils.profile - Finished executing function run_query in 0.173201 s
    diff --git a/tutorials/eicu.ipynb b/tutorials/eicu.ipynb index 489380c..ba4bca6 100644 --- a/tutorials/eicu.ipynb +++ b/tutorials/eicu.ipynb @@ -35,10 +35,10 @@ "id": "75a140e0-fb27-4319-862f-be54397abe5c", "metadata": { "execution": { - "iopub.execute_input": "2023-11-08T20:58:23.351005Z", - "iopub.status.busy": "2023-11-08T20:58:23.350547Z", - "iopub.status.idle": "2023-11-08T20:58:24.957533Z", - "shell.execute_reply": "2023-11-08T20:58:24.956511Z" + "iopub.execute_input": "2023-11-24T03:37:45.960929Z", + "iopub.status.busy": "2023-11-24T03:37:45.960436Z", + "iopub.status.idle": "2023-11-24T03:37:48.112756Z", + "shell.execute_reply": "2023-11-24T03:37:48.111242Z" }, "tags": [] }, @@ -47,7 +47,7 @@ "name": "stderr", "output_type": "stream", "text": [ - "2023-11-08 15:58:24,363 \u001b[1;37mINFO\u001b[0m cycquery.orm - Database setup, ready to run queries!\n" + "2023-11-23 22:37:47,310 \u001b[1;37mINFO\u001b[0m cycquery.orm - Database setup, ready to run queries!\n" ] }, { @@ -124,10 +124,10 @@ "id": "c1efa964-8978-4a0e-9892-5ea4ce9953a3", "metadata": { "execution": { - "iopub.execute_input": "2023-11-08T20:58:24.964872Z", - "iopub.status.busy": "2023-11-08T20:58:24.964337Z", - "iopub.status.idle": "2023-11-08T20:58:25.013089Z", - "shell.execute_reply": "2023-11-08T20:58:25.012179Z" + "iopub.execute_input": "2023-11-24T03:37:48.119689Z", + "iopub.status.busy": "2023-11-24T03:37:48.118927Z", + "iopub.status.idle": "2023-11-24T03:37:48.187108Z", + "shell.execute_reply": "2023-11-24T03:37:48.185534Z" }, "tags": [] }, @@ -136,14 +136,14 @@ "name": "stderr", "output_type": "stream", "text": [ - "2023-11-08 15:58:25,008 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n" + "2023-11-23 22:37:48,180 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ - "2023-11-08 15:58:25,009 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.037633 s\n" + "2023-11-23 22:37:48,181 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.052660 s\n" ] }, { @@ -180,10 +180,10 @@ "id": "a7ab5fa3-e26b-47a7-818f-1bf367a55760", "metadata": { "execution": { - "iopub.execute_input": "2023-11-08T20:58:25.017769Z", - "iopub.status.busy": "2023-11-08T20:58:25.017327Z", - "iopub.status.idle": "2023-11-08T20:58:25.115727Z", - "shell.execute_reply": "2023-11-08T20:58:25.112667Z" + "iopub.execute_input": "2023-11-24T03:37:48.193117Z", + "iopub.status.busy": "2023-11-24T03:37:48.192679Z", + "iopub.status.idle": "2023-11-24T03:37:48.287590Z", + "shell.execute_reply": "2023-11-24T03:37:48.286710Z" }, "tags": [] }, @@ -192,14 +192,14 @@ "name": "stderr", "output_type": "stream", "text": [ - "2023-11-08 15:58:25,109 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n" + "2023-11-23 22:37:48,281 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ - "2023-11-08 15:58:25,109 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.085164 s\n" + "2023-11-23 22:37:48,282 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.080187 s\n" ] }, { @@ -236,10 +236,10 @@ "id": "24043abc-1878-4e00-8229-36d4a0368b98", "metadata": { "execution": { - "iopub.execute_input": "2023-11-08T20:58:25.119414Z", - "iopub.status.busy": "2023-11-08T20:58:25.119033Z", - "iopub.status.idle": "2023-11-08T20:58:25.174911Z", - "shell.execute_reply": "2023-11-08T20:58:25.174135Z" + "iopub.execute_input": "2023-11-24T03:37:48.291826Z", + "iopub.status.busy": "2023-11-24T03:37:48.291374Z", + "iopub.status.idle": "2023-11-24T03:37:48.351296Z", + "shell.execute_reply": "2023-11-24T03:37:48.350078Z" }, "tags": [] }, @@ -248,14 +248,14 @@ "name": "stderr", "output_type": "stream", "text": [ - "2023-11-08 15:58:25,170 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n" + "2023-11-23 22:37:48,344 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ - "2023-11-08 15:58:25,171 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.039931 s\n" + "2023-11-23 22:37:48,346 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.039138 s\n" ] }, { @@ -298,10 +298,10 @@ "id": "f6142f27-e8d1-453c-bfe2-2265d9ff1914", "metadata": { "execution": { - "iopub.execute_input": "2023-11-08T20:58:25.178567Z", - "iopub.status.busy": "2023-11-08T20:58:25.178246Z", - "iopub.status.idle": "2023-11-08T20:58:25.296987Z", - "shell.execute_reply": "2023-11-08T20:58:25.296451Z" + "iopub.execute_input": "2023-11-24T03:37:48.356834Z", + "iopub.status.busy": "2023-11-24T03:37:48.356507Z", + "iopub.status.idle": "2023-11-24T03:37:48.548821Z", + "shell.execute_reply": "2023-11-24T03:37:48.547656Z" }, "tags": [] }, @@ -310,14 +310,14 @@ "name": "stderr", "output_type": "stream", "text": [ - "2023-11-08 15:58:25,293 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n" + "2023-11-23 22:37:48,542 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ - "2023-11-08 15:58:25,294 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.102749 s\n" + "2023-11-23 22:37:48,543 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.173201 s\n" ] }, { diff --git a/tutorials/mimiciii.html b/tutorials/mimiciii.html index 82323b4..efafc26 100644 --- a/tutorials/mimiciii.html +++ b/tutorials/mimiciii.html @@ -478,7 +478,7 @@

    Imports and instantiate 
    -2023-11-08 15:58:32,875 INFO cycquery.orm    - Database setup, ready to run queries!
+2023-11-23 22:37:58,713 INFO cycquery.orm    - Database setup, ready to run queries!

    @@ -512,8 +512,8 @@

    Example 1. Get all male patients with a mortality outcome. 
    -2023-11-08 15:58:37,986 INFO cycquery.orm    - Query returned successfully!
-2023-11-08 15:58:37,987 INFO cycquery.utils.profile - Finished executing function run_query in 0.026587 s
+2023-11-23 22:38:05,599 INFO cycquery.orm    - Query returned successfully!
+2023-11-23 22:38:05,600 INFO cycquery.utils.profile - Finished executing function run_query in 0.040093 s

    @@ -553,8 +553,8 @@

    Example 2. Get all female patient encounters with diagnoses ( 
    -2023-11-08 15:58:38,292 INFO cycquery.orm    - Query returned successfully!
-2023-11-08 15:58:38,293 INFO cycquery.utils.profile - Finished executing function run_query in 0.276888 s
+2023-11-23 22:38:05,735 INFO cycquery.orm    - Query returned successfully!
+2023-11-23 22:38:05,737 INFO cycquery.utils.profile - Finished executing function run_query in 0.098095 s

    @@ -586,8 +586,8 @@

    Example 3. Get potassium lab tests for female patients. 
    -2023-11-08 15:58:38,367 INFO cycquery.orm    - Query returned successfully!
-2023-11-08 15:58:38,368 INFO cycquery.utils.profile - Finished executing function run_query in 0.035920 s
+2023-11-23 22:38:05,812 INFO cycquery.orm    - Query returned successfully!
+2023-11-23 22:38:05,813 INFO cycquery.utils.profile - Finished executing function run_query in 0.036237 s

    @@ -624,8 +624,8 @@

    Example 4. Get AaDO2 carevue chart events for male patients that have a 
    -2023-11-08 15:59:50,841 INFO cycquery.orm    - Query returned successfully!
-2023-11-08 15:59:50,843 INFO cycquery.utils.profile - Finished executing function run_query in 72.434316 s
+2023-11-23 22:39:15,290 INFO cycquery.orm    - Query returned successfully!
+2023-11-23 22:39:15,291 INFO cycquery.utils.profile - Finished executing function run_query in 69.433935 s

    diff --git a/tutorials/mimiciii.ipynb b/tutorials/mimiciii.ipynb index a8f5c3f..902e83e 100644 --- a/tutorials/mimiciii.ipynb +++ b/tutorials/mimiciii.ipynb @@ -35,10 +35,10 @@ "id": "75a140e0-fb27-4319-862f-be54397abe5c", "metadata": { "execution": { - "iopub.execute_input": "2023-11-08T20:58:28.037604Z", - "iopub.status.busy": "2023-11-08T20:58:28.036692Z", - "iopub.status.idle": "2023-11-08T20:58:37.951891Z", - "shell.execute_reply": "2023-11-08T20:58:37.950982Z" + "iopub.execute_input": "2023-11-24T03:37:51.294382Z", + "iopub.status.busy": "2023-11-24T03:37:51.293870Z", + "iopub.status.idle": "2023-11-24T03:38:05.548744Z", + "shell.execute_reply": "2023-11-24T03:38:05.547219Z" }, "tags": [] }, @@ -47,7 +47,7 @@ "name": "stderr", "output_type": "stream", "text": [ - "2023-11-08 15:58:32,875 \u001b[1;37mINFO\u001b[0m cycquery.orm - Database setup, ready to run queries!\n" + "2023-11-23 22:37:58,713 \u001b[1;37mINFO\u001b[0m cycquery.orm - Database setup, ready to run queries!\n" ] }, { @@ -94,10 +94,10 @@ "id": "c1efa964-8978-4a0e-9892-5ea4ce9953a3", "metadata": { "execution": { - "iopub.execute_input": "2023-11-08T20:58:37.957179Z", - "iopub.status.busy": "2023-11-08T20:58:37.956551Z", - "iopub.status.idle": "2023-11-08T20:58:37.992438Z", - "shell.execute_reply": "2023-11-08T20:58:37.991351Z" + "iopub.execute_input": "2023-11-24T03:38:05.553142Z", + "iopub.status.busy": "2023-11-24T03:38:05.552360Z", + "iopub.status.idle": "2023-11-24T03:38:05.607873Z", + "shell.execute_reply": "2023-11-24T03:38:05.606106Z" }, "tags": [] }, @@ -106,14 +106,14 @@ "name": "stderr", "output_type": "stream", "text": [ - "2023-11-08 15:58:37,986 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n" + "2023-11-23 22:38:05,599 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ - "2023-11-08 15:58:37,987 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.026587 s\n" + "2023-11-23 22:38:05,600 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.040093 s\n" ] }, { @@ -150,10 +150,10 @@ "id": "a7ab5fa3-e26b-47a7-818f-1bf367a55760", "metadata": { "execution": { - "iopub.execute_input": "2023-11-08T20:58:37.997862Z", - "iopub.status.busy": "2023-11-08T20:58:37.997405Z", - "iopub.status.idle": "2023-11-08T20:58:38.299295Z", - "shell.execute_reply": "2023-11-08T20:58:38.298124Z" + "iopub.execute_input": "2023-11-24T03:38:05.614722Z", + "iopub.status.busy": "2023-11-24T03:38:05.614197Z", + "iopub.status.idle": "2023-11-24T03:38:05.745131Z", + "shell.execute_reply": "2023-11-24T03:38:05.743247Z" }, "tags": [] }, @@ -162,14 +162,14 @@ "name": "stderr", "output_type": "stream", "text": [ - "2023-11-08 15:58:38,292 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n" + "2023-11-23 22:38:05,735 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ - "2023-11-08 15:58:38,293 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.276888 s\n" + "2023-11-23 22:38:05,737 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.098095 s\n" ] }, { @@ -211,10 +211,10 @@ "id": "24043abc-1878-4e00-8229-36d4a0368b98", "metadata": { "execution": { - "iopub.execute_input": "2023-11-08T20:58:38.303326Z", - "iopub.status.busy": "2023-11-08T20:58:38.302648Z", - "iopub.status.idle": "2023-11-08T20:58:38.375033Z", - "shell.execute_reply": "2023-11-08T20:58:38.373805Z" + "iopub.execute_input": "2023-11-24T03:38:05.752104Z", + "iopub.status.busy": "2023-11-24T03:38:05.751362Z", + "iopub.status.idle": "2023-11-24T03:38:05.820035Z", + "shell.execute_reply": "2023-11-24T03:38:05.818165Z" }, "tags": [] }, @@ -223,14 +223,14 @@ "name": "stderr", "output_type": "stream", "text": [ - "2023-11-08 15:58:38,367 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n" + "2023-11-23 22:38:05,812 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ - "2023-11-08 15:58:38,368 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.035920 s\n" + "2023-11-23 22:38:05,813 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.036237 s\n" ] }, { @@ -264,10 +264,10 @@ "id": "f6142f27-e8d1-453c-bfe2-2265d9ff1914", "metadata": { "execution": { - "iopub.execute_input": "2023-11-08T20:58:38.380024Z", - "iopub.status.busy": "2023-11-08T20:58:38.379453Z", - "iopub.status.idle": "2023-11-08T20:59:50.851658Z", - "shell.execute_reply": "2023-11-08T20:59:50.849805Z" + "iopub.execute_input": "2023-11-24T03:38:05.829013Z", + "iopub.status.busy": "2023-11-24T03:38:05.828515Z", + "iopub.status.idle": "2023-11-24T03:39:15.295462Z", + "shell.execute_reply": "2023-11-24T03:39:15.294591Z" }, "tags": [] }, @@ -276,14 +276,14 @@ "name": "stderr", "output_type": "stream", "text": [ - "2023-11-08 15:59:50,841 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n" + "2023-11-23 22:39:15,290 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ - "2023-11-08 15:59:50,843 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 72.434316 s\n" + "2023-11-23 22:39:15,291 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 69.433935 s\n" ] }, { diff --git a/tutorials/mimiciv.html b/tutorials/mimiciv.html index cfc46d8..50a5fe8 100644 --- a/tutorials/mimiciv.html +++ b/tutorials/mimiciv.html @@ -482,7 +482,7 @@

    Imports and instantiate 
    -2023-11-08 15:59:56,113 INFO cycquery.orm    - Database setup, ready to run queries!
+2023-11-23 22:39:20,348 INFO cycquery.orm    - Database setup, ready to run queries!

    @@ -527,8 +527,8 @@

    Example 1. Get all patient admissions from 2021 or later (approx year of adm 

    -2023-11-08 15:59:58,225 INFO cycquery.orm    - Query returned successfully!
-2023-11-08 15:59:58,226 INFO cycquery.utils.profile - Finished executing function run_query in 0.290448 s
+2023-11-23 22:39:23,281 INFO cycquery.orm    - Query returned successfully!
+2023-11-23 22:39:23,282 INFO cycquery.utils.profile - Finished executing function run_query in 0.199134 s
    @@ -573,8 +573,8 @@

    Example 2. Get all patient encounters with diagnoses ( 
    -2023-11-08 15:59:59,040 INFO cycquery.orm    - Query returned successfully!
-2023-11-08 15:59:59,041 INFO cycquery.utils.profile - Finished executing function run_query in 0.772522 s
+2023-11-23 22:39:23,934 INFO cycquery.orm    - Query returned successfully!
+2023-11-23 22:39:23,935 INFO cycquery.utils.profile - Finished executing function run_query in 0.611809 s

    @@ -619,8 +619,8 @@

    Example 3. Advanced - uses 
    -2023-11-08 16:00:00,676 INFO cycquery.orm    - Query returned successfully!
-2023-11-08 16:00:00,676 INFO cycquery.utils.profile - Finished executing function run_query in 1.594978 s
+2023-11-23 22:39:25,453 INFO cycquery.orm    - Query returned successfully!
+2023-11-23 22:39:25,454 INFO cycquery.utils.profile - Finished executing function run_query in 1.474806 s

    @@ -661,8 +661,8 @@

    Example 4. Get routine vital signs for patients from year 2015. 
    -2023-11-08 16:01:24,568 INFO cycquery.orm    - Query returned successfully!
-2023-11-08 16:01:24,569 INFO cycquery.utils.profile - Finished executing function run_query in 83.843559 s
+2023-11-23 22:40:50,768 INFO cycquery.orm    - Query returned successfully!
+2023-11-23 22:40:50,770 INFO cycquery.utils.profile - Finished executing function run_query in 85.286734 s

    @@ -703,8 +703,8 @@

    Example 5. Get hemoglobin lab tests for patients from year 2009. 
    -2023-11-08 16:02:34,956 INFO cycquery.orm    - Query returned successfully!
-2023-11-08 16:02:34,957 INFO cycquery.utils.profile - Finished executing function run_query in 70.321969 s
+2023-11-23 22:41:57,034 INFO cycquery.orm    - Query returned successfully!
+2023-11-23 22:41:57,035 INFO cycquery.utils.profile - Finished executing function run_query in 66.222633 s

    @@ -751,8 +751,8 @@

    Example 6. Get radiology reports and filter on keywords 
    -2023-11-08 16:02:42,459 INFO cycquery.orm    - Query returned successfully!
-2023-11-08 16:02:42,460 INFO cycquery.utils.profile - Finished executing function run_query in 7.464549 s
+2023-11-23 22:42:04,740 INFO cycquery.orm    - Query returned successfully!
+2023-11-23 22:42:04,741 INFO cycquery.utils.profile - Finished executing function run_query in 7.664807 s

    @@ -795,8 +795,8 @@

    Example 7. Get all female patient encounters from year 2015, and return batc 

    -2023-11-08 16:02:42,811 INFO cycquery.orm    - Query returned successfully!
-2023-11-08 16:02:42,812 INFO cycquery.utils.profile - Finished executing function run_query in 0.303958 s
+2023-11-23 22:42:05,089 INFO cycquery.orm    - Query returned successfully!
+2023-11-23 22:42:05,091 INFO cycquery.utils.profile - Finished executing function run_query in 0.307930 s
    @@ -824,8 +824,8 @@

    Example 8. Running a raw SQL string. 
    -2023-11-08 16:02:42,930 INFO cycquery.orm    - Query returned successfully!
-2023-11-08 16:02:42,931 INFO cycquery.utils.profile - Finished executing function run_query in 0.005479 s
+2023-11-23 22:42:05,255 INFO cycquery.orm    - Query returned successfully!
+2023-11-23 22:42:05,256 INFO cycquery.utils.profile - Finished executing function run_query in 0.006093 s

    diff --git a/tutorials/mimiciv.ipynb b/tutorials/mimiciv.ipynb index cb5e76f..ea6a450 100644 --- a/tutorials/mimiciv.ipynb +++ b/tutorials/mimiciv.ipynb @@ -35,10 +35,10 @@ "id": "53009e6b", "metadata": { "execution": { - "iopub.execute_input": "2023-11-08T20:59:53.164611Z", - "iopub.status.busy": "2023-11-08T20:59:53.163531Z", - "iopub.status.idle": "2023-11-08T20:59:57.917159Z", - "shell.execute_reply": "2023-11-08T20:59:57.916509Z" + "iopub.execute_input": "2023-11-24T03:39:17.251584Z", + "iopub.status.busy": "2023-11-24T03:39:17.251090Z", + "iopub.status.idle": "2023-11-24T03:39:23.055796Z", + "shell.execute_reply": "2023-11-24T03:39:23.054025Z" }, "tags": [] }, @@ -47,7 +47,7 @@ "name": "stderr", "output_type": "stream", "text": [ - "2023-11-08 15:59:56,113 \u001b[1;37mINFO\u001b[0m cycquery.orm - Database setup, ready to run queries!\n" + "2023-11-23 22:39:20,348 \u001b[1;37mINFO\u001b[0m cycquery.orm - Database setup, ready to run queries!\n" ] }, { @@ -105,10 +105,10 @@ "id": "cdfadaa4-6fd6-4fd7-85cf-e012aa0799e1", "metadata": { "execution": { - "iopub.execute_input": "2023-11-08T20:59:57.923978Z", - "iopub.status.busy": "2023-11-08T20:59:57.923542Z", - "iopub.status.idle": "2023-11-08T20:59:58.229935Z", - "shell.execute_reply": "2023-11-08T20:59:58.229080Z" + "iopub.execute_input": "2023-11-24T03:39:23.064812Z", + "iopub.status.busy": "2023-11-24T03:39:23.063994Z", + "iopub.status.idle": "2023-11-24T03:39:23.287136Z", + "shell.execute_reply": "2023-11-24T03:39:23.286185Z" } }, "outputs": [ @@ -116,14 +116,14 @@ "name": "stderr", "output_type": "stream", "text": [ - "2023-11-08 15:59:58,225 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n" + "2023-11-23 22:39:23,281 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ - "2023-11-08 15:59:58,226 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.290448 s\n" + "2023-11-23 22:39:23,282 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.199134 s\n" ] }, { @@ -160,10 +160,10 @@ "id": "a89a9cf0", "metadata": { "execution": { - "iopub.execute_input": "2023-11-08T20:59:58.236848Z", - "iopub.status.busy": "2023-11-08T20:59:58.236425Z", - "iopub.status.idle": "2023-11-08T20:59:59.044896Z", - "shell.execute_reply": "2023-11-08T20:59:59.044057Z" + "iopub.execute_input": "2023-11-24T03:39:23.293585Z", + "iopub.status.busy": "2023-11-24T03:39:23.293148Z", + "iopub.status.idle": "2023-11-24T03:39:23.940880Z", + "shell.execute_reply": "2023-11-24T03:39:23.939536Z" } }, "outputs": [ @@ -171,14 +171,14 @@ "name": "stderr", "output_type": "stream", "text": [ - "2023-11-08 15:59:59,040 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n" + "2023-11-23 22:39:23,934 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ - "2023-11-08 15:59:59,041 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.772522 s\n" + "2023-11-23 22:39:23,935 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.611809 s\n" ] }, { @@ -225,10 +225,10 @@ "id": "03936cee", "metadata": { "execution": { - "iopub.execute_input": "2023-11-08T20:59:59.052927Z", - "iopub.status.busy": "2023-11-08T20:59:59.052214Z", - "iopub.status.idle": "2023-11-08T21:00:00.680747Z", - "shell.execute_reply": "2023-11-08T21:00:00.679704Z" + "iopub.execute_input": "2023-11-24T03:39:23.946975Z", + "iopub.status.busy": "2023-11-24T03:39:23.946309Z", + "iopub.status.idle": "2023-11-24T03:39:25.457594Z", + "shell.execute_reply": "2023-11-24T03:39:25.456988Z" } }, "outputs": [ @@ -236,14 +236,14 @@ "name": "stderr", "output_type": "stream", "text": [ - "2023-11-08 16:00:00,676 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n" + "2023-11-23 22:39:25,453 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ - "2023-11-08 16:00:00,676 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 1.594978 s\n" + "2023-11-23 22:39:25,454 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 1.474806 s\n" ] }, { @@ -290,10 +290,10 @@ "id": "56a72377", "metadata": { "execution": { - "iopub.execute_input": "2023-11-08T21:00:00.693159Z", - "iopub.status.busy": "2023-11-08T21:00:00.692376Z", - "iopub.status.idle": "2023-11-08T21:01:24.573202Z", - "shell.execute_reply": "2023-11-08T21:01:24.572230Z" + "iopub.execute_input": "2023-11-24T03:39:25.464551Z", + "iopub.status.busy": "2023-11-24T03:39:25.464222Z", + "iopub.status.idle": "2023-11-24T03:40:50.775556Z", + "shell.execute_reply": "2023-11-24T03:40:50.774359Z" } }, "outputs": [ @@ -301,14 +301,14 @@ "name": "stderr", "output_type": "stream", "text": [ - "2023-11-08 16:01:24,568 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n" + "2023-11-23 22:40:50,768 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ - "2023-11-08 16:01:24,569 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 83.843559 s\n" + "2023-11-23 22:40:50,770 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 85.286734 s\n" ] }, { @@ -351,10 +351,10 @@ "id": "bce11f81", "metadata": { "execution": { - "iopub.execute_input": "2023-11-08T21:01:24.582030Z", - "iopub.status.busy": "2023-11-08T21:01:24.581316Z", - "iopub.status.idle": "2023-11-08T21:02:34.961093Z", - "shell.execute_reply": "2023-11-08T21:02:34.960174Z" + "iopub.execute_input": "2023-11-24T03:40:50.782326Z", + "iopub.status.busy": "2023-11-24T03:40:50.781679Z", + "iopub.status.idle": "2023-11-24T03:41:57.040652Z", + "shell.execute_reply": "2023-11-24T03:41:57.039479Z" } }, "outputs": [ @@ -362,14 +362,14 @@ "name": "stderr", "output_type": "stream", "text": [ - "2023-11-08 16:02:34,956 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n" + "2023-11-23 22:41:57,034 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ - "2023-11-08 16:02:34,957 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 70.321969 s\n" + "2023-11-23 22:41:57,035 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 66.222633 s\n" ] }, { @@ -412,10 +412,10 @@ "id": "f00d270c-d78f-4dc0-8dae-ff4d52958c8b", "metadata": { "execution": { - "iopub.execute_input": "2023-11-08T21:02:34.968980Z", - "iopub.status.busy": "2023-11-08T21:02:34.968364Z", - "iopub.status.idle": "2023-11-08T21:02:42.464279Z", - "shell.execute_reply": "2023-11-08T21:02:42.463297Z" + "iopub.execute_input": "2023-11-24T03:41:57.048159Z", + "iopub.status.busy": "2023-11-24T03:41:57.047467Z", + "iopub.status.idle": "2023-11-24T03:42:04.748038Z", + "shell.execute_reply": "2023-11-24T03:42:04.746509Z" }, "tags": [] }, @@ -424,14 +424,14 @@ "name": "stderr", "output_type": "stream", "text": [ - "2023-11-08 16:02:42,459 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n" + "2023-11-23 22:42:04,740 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ - "2023-11-08 16:02:42,460 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 7.464549 s\n" + "2023-11-23 22:42:04,741 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 7.664807 s\n" ] }, { @@ -480,10 +480,10 @@ "id": "28683d70-376e-4d9b-883d-1a7de634e455", "metadata": { "execution": { - "iopub.execute_input": "2023-11-08T21:02:42.470041Z", - "iopub.status.busy": "2023-11-08T21:02:42.469517Z", - "iopub.status.idle": "2023-11-08T21:02:42.920573Z", - "shell.execute_reply": "2023-11-08T21:02:42.919792Z" + "iopub.execute_input": "2023-11-24T03:42:04.756972Z", + "iopub.status.busy": "2023-11-24T03:42:04.756682Z", + "iopub.status.idle": "2023-11-24T03:42:05.243227Z", + "shell.execute_reply": "2023-11-24T03:42:05.242242Z" } }, "outputs": [ @@ -491,14 +491,14 @@ "name": "stderr", "output_type": "stream", "text": [ - "2023-11-08 16:02:42,811 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n" + "2023-11-23 22:42:05,089 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ - "2023-11-08 16:02:42,812 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.303958 s\n" + "2023-11-23 22:42:05,091 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.307930 s\n" ] }, { @@ -543,10 +543,10 @@ "id": "a853deec", "metadata": { "execution": { - "iopub.execute_input": "2023-11-08T21:02:42.924505Z", - "iopub.status.busy": "2023-11-08T21:02:42.924128Z", - "iopub.status.idle": "2023-11-08T21:02:42.935013Z", - "shell.execute_reply": "2023-11-08T21:02:42.934289Z" + "iopub.execute_input": "2023-11-24T03:42:05.249047Z", + "iopub.status.busy": "2023-11-24T03:42:05.248572Z", + "iopub.status.idle": "2023-11-24T03:42:05.260818Z", + "shell.execute_reply": "2023-11-24T03:42:05.259788Z" }, "tags": [] }, @@ -555,14 +555,14 @@ "name": "stderr", "output_type": "stream", "text": [ - "2023-11-08 16:02:42,930 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n" + "2023-11-23 22:42:05,255 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ - "2023-11-08 16:02:42,931 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.005479 s\n" + "2023-11-23 22:42:05,256 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.006093 s\n" ] }, { diff --git a/tutorials/omop.html b/tutorials/omop.html index f7e38d1..2d4e12d 100644 --- a/tutorials/omop.html +++ b/tutorials/omop.html @@ -487,7 +487,7 @@

    Imports and instantiate 
    -2023-11-08 16:02:46,669 INFO cycquery.orm    - Database setup, ready to run queries!
+2023-11-23 22:42:09,381 INFO cycquery.orm    - Database setup, ready to run queries!

    @@ -561,8 +561,8 @@

    Example 1. Get all patient visits in or after 2010. 
    -2023-11-08 16:02:48,170 INFO cycquery.orm    - Query returned successfully!
-2023-11-08 16:02:48,172 INFO cycquery.utils.profile - Finished executing function run_query in 0.067953 s
+2023-11-23 22:42:10,882 INFO cycquery.orm    - Query returned successfully!
+2023-11-23 22:42:10,884 INFO cycquery.utils.profile - Finished executing function run_query in 0.062023 s

    @@ -620,8 +620,8 @@

    Example 2. Get measurements for all visits in or after 2020. 
    -2023-11-08 16:02:48,313 INFO cycquery.orm    - Query returned successfully!
-2023-11-08 16:02:48,314 INFO cycquery.utils.profile - Finished executing function run_query in 0.061197 s
+2023-11-23 22:42:10,992 INFO cycquery.orm    - Query returned successfully!
+2023-11-23 22:42:10,993 INFO cycquery.utils.profile - Finished executing function run_query in 0.059403 s

    @@ -667,7 +667,7 @@

    Imports and instantiate 
    -2023-11-08 16:02:53,687 INFO cycquery.orm    - Database setup, ready to run queries!
+2023-11-23 22:42:17,739 INFO cycquery.orm    - Database setup, ready to run queries!

    @@ -707,8 +707,8 @@

    Example 1. Get all patient visits that ended in a mortality outcome in or af 

    -2023-11-08 16:03:01,176 INFO cycquery.orm    - Query returned successfully!
-2023-11-08 16:03:01,177 INFO cycquery.utils.profile - Finished executing function run_query in 0.922518 s
+2023-11-23 22:42:25,667 INFO cycquery.orm    - Query returned successfully!
+2023-11-23 22:42:25,668 INFO cycquery.utils.profile - Finished executing function run_query in 0.932004 s
    @@ -764,8 +764,8 @@

    Example 2. Get all measurements for female patient visits with 
    -2023-11-08 16:03:17,750 INFO cycquery.orm    - Query returned successfully!
-2023-11-08 16:03:17,752 INFO cycquery.utils.profile - Finished executing function run_query in 16.504966 s
+2023-11-23 22:42:41,542 INFO cycquery.orm    - Query returned successfully!
+2023-11-23 22:42:41,543 INFO cycquery.utils.profile - Finished executing function run_query in 15.802630 s

    @@ -793,7 +793,7 @@

    Example 2. Get all measurements for female patient visits with