shape_base.py:873: VisibleDeprecationWarning

[pdeperio]

(Benign) warning appearing during MC processing:

/cvmfs/xenon.opensciencegrid.org/releases/anaconda/2.4/envs/pax_v6.1.0/lib/python3.4/site-packages/numpy/lib/shape_base.py:873: VisibleDeprecationWarning: using a non-integer number instead of an integer will result in an error in the future

Does not appear in Midway processing (numpy=1.11.1), so might be from newer version on CVMFS (numpy=1.11.2).

Would be nice to suppress/fix this to clean up logs and facilitate (real) error searching.

Note, to load CVMFS environment on Midway:

export PATH="/cvmfs/xenon.opensciencegrid.org/releases/anaconda/2.4/bin:$PATH"
source activate pax_v6.1.0

[JelleAalbers]

I agree. We'll have to do something like http://stackoverflow.com/questions/22373927/get-traceback-of-warnings to show where the warning actually comes from.

[tunnell]

Can we not change version on CVMFS to match Midway for now? @JelleAalbers are you just suggesting we add np.seterr(invalid='raise') in core?

[JelleAalbers]

Yes, just to figure out where it comes from. Maybe in plugin.py so it gets loaded everywhere.