From 18551999beb35feb983aa45a9adcc5b09bcf7a5b Mon Sep 17 00:00:00 2001 From: Lance Parsons Date: Tue, 16 Nov 2021 20:32:29 -0500 Subject: [PATCH] Prepare for release 0.3.0 Updated cran-comments.md Added revdep to check downstream dependencies. --- .Rbuildignore | 1 + DESCRIPTION | 2 +- NEWS.md | 6 ++--- cran-comments.md | 16 ++++-------- revdep/.gitignore | 7 +++++ revdep/README.md | 64 ++++++++++++++++++++++++++++++++++++++++++++++ revdep/cran.md | 7 +++++ revdep/email.yml | 5 ++++ revdep/failures.md | 1 + revdep/problems.md | 1 + 10 files changed, 95 insertions(+), 15 deletions(-) create mode 100644 revdep/.gitignore create mode 100644 revdep/README.md create mode 100644 revdep/cran.md create mode 100644 revdep/email.yml create mode 100644 revdep/failures.md create mode 100644 revdep/problems.md diff --git a/.Rbuildignore b/.Rbuildignore index 83a2db3..8d7c8de 100644 --- a/.Rbuildignore +++ b/.Rbuildignore @@ -9,3 +9,4 @@ ^CRAN-RELEASE$ ^\.github$ ^\.lintr$ +^revdep$ diff --git a/DESCRIPTION b/DESCRIPTION index 59f1371..dc77b90 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,7 +1,7 @@ Package: accucor Type: Package Title: Natural Abundance Correction of Mass Spectrometer Data -Version: 0.2.4.9000 +Version: 0.3.0 Authors@R: c( person(given = "Xiaoyang", family = "Su", diff --git a/NEWS.md b/NEWS.md index 693a75d..eefee45 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,10 +1,10 @@ -# accucor 0.2.4.9000 +# accucor 0.3.0 * Added reference to package description -* Properly recognize new El-Maven column "adductName" as a non-sample column +* Properly recognize new El-Maven column "adductName" as a non-sample column (#26, @lparsons) * Export lower level functions for isotope correction: `carbon_isotope_correction`, `deuterium_isotope_correction`, and - `nitrogen_isotope_correction` + `nitrogen_isotope_correction` (#29, @lparsons) # accucor 0.2.4 diff --git a/cran-comments.md b/cran-comments.md index 36c6d7c..5e00577 100644 --- a/cran-comments.md +++ b/cran-comments.md @@ -1,21 +1,15 @@ -## Resubmission -This is a resubmission. In this version I have: - -* Fixed a broken URL in README.md - ## Test environments + Testing via R CMD checks using GitHub Actions with following matrix: * os: windows-latest, r: 'release' * os: macOS-latest, r: 'release' -* os: ubuntu-20.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest" -* os: ubuntu-20.04, r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest" +* os: ubuntu-latest, r: 'release' +* os: ubuntu-latest, r: 'devel', http-user-agent: 'release' +* os: ubuntu-latest, r: 'oldrel-1' ## R CMD check results -There were no ERRORs, WARNINGs. - -There was 1 NOTE: -* This is my first submission to CRAN +There were no ERRORs, WARNINGs, or NOTEs. ## Downstream dependencies diff --git a/revdep/.gitignore b/revdep/.gitignore new file mode 100644 index 0000000..111ab32 --- /dev/null +++ b/revdep/.gitignore @@ -0,0 +1,7 @@ +checks +library +checks.noindex +library.noindex +cloud.noindex +data.sqlite +*.html diff --git a/revdep/README.md b/revdep/README.md new file mode 100644 index 0000000..31f7c60 --- /dev/null +++ b/revdep/README.md @@ -0,0 +1,64 @@ +# Platform + +|field |value | +|:--------|:------------------------------------| +|version |R version 4.1.2 (2021-11-01) | +|os |Ubuntu 20.04.3 LTS | +|system |x86_64, linux-gnu | +|ui |RStudio | +|language |(EN) | +|collate |en_US.UTF-8 | +|ctype |en_US.UTF-8 | +|tz |America/New_York | +|date |2021-11-16 | +|rstudio |2021.09.1+372 Ghost Orchid (desktop) | +|pandoc |2.5 @ /usr/bin/pandoc | + +# Dependencies + +|package |old |new |Δ | +|:-----------|:------|:------|:--| +|accucor |0.2.4 |0.3.0 |* | +|bit |4.0.4 |4.0.4 | | +|bit64 |4.0.5 |4.0.5 | | +|cellranger |1.1.0 |1.1.0 | | +|CHNOSZ |1.4.1 |1.4.1 | | +|cli |3.1.0 |3.1.0 | | +|clipr |0.7.1 |0.7.1 | | +|cpp11 |0.4.1 |0.4.1 | | +|crayon |1.4.2 |1.4.2 | | +|dplyr |1.0.7 |1.0.7 | | +|ellipsis |0.3.2 |0.3.2 | | +|fansi |0.5.0 |0.5.0 | | +|generics |0.1.1 |0.1.1 | | +|glue |1.5.0 |1.5.0 | | +|gsubfn |0.7 |NA |* | +|hms |1.1.1 |1.1.1 | | +|lifecycle |1.0.1 |1.0.1 | | +|magrittr |2.0.1 |2.0.1 | | +|nnls |1.4 |1.4 | | +|pillar |1.6.4 |1.6.4 | | +|pkgconfig |2.0.3 |2.0.3 | | +|prettyunits |1.1.1 |1.1.1 | | +|progress |1.2.2 |1.2.2 | | +|proto |1.0.0 |NA |* | +|purrr |0.3.4 |0.3.4 | | +|R6 |2.5.1 |2.5.1 | | +|Rcpp |1.0.7 |1.0.7 | | +|readr |2.1.0 |2.1.0 | | +|readxl |1.3.1 |1.3.1 | | +|rematch |1.0.1 |1.0.1 | | +|rlang |0.4.12 |0.4.12 | | +|stringi |1.7.5 |1.7.5 | | +|stringr |1.4.0 |1.4.0 | | +|tibble |3.1.6 |3.1.6 | | +|tidyselect |1.1.1 |1.1.1 | | +|tzdb |0.2.0 |0.2.0 | | +|utf8 |1.2.2 |1.2.2 | | +|vctrs |0.3.8 |0.3.8 | | +|vroom |1.5.6 |1.5.6 | | +|withr |2.4.2 |2.4.2 | | +|writexl |1.4.0 |1.4.0 | | + +# Revdeps + diff --git a/revdep/cran.md b/revdep/cran.md new file mode 100644 index 0000000..33114b6 --- /dev/null +++ b/revdep/cran.md @@ -0,0 +1,7 @@ +## revdepcheck results + +We checked 0 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package. + + * We saw 0 new problems + * We failed to check 0 packages + diff --git a/revdep/email.yml b/revdep/email.yml new file mode 100644 index 0000000..0c5cef8 --- /dev/null +++ b/revdep/email.yml @@ -0,0 +1,5 @@ +release_date: ??? +rel_release_date: ??? +my_news_url: ??? +release_version: ??? +release_details: ??? diff --git a/revdep/failures.md b/revdep/failures.md new file mode 100644 index 0000000..9a20736 --- /dev/null +++ b/revdep/failures.md @@ -0,0 +1 @@ +*Wow, no problems at all. :)* \ No newline at end of file diff --git a/revdep/problems.md b/revdep/problems.md new file mode 100644 index 0000000..9a20736 --- /dev/null +++ b/revdep/problems.md @@ -0,0 +1 @@ +*Wow, no problems at all. :)* \ No newline at end of file