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Possible Performance Improvements #4

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jeslipp opened this issue Oct 5, 2017 · 1 comment

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jeslipp commented Oct 5, 2017

use pigz instead of gzip
use more cores for bowtie2 (maybe 2)
use more cores for featureCounts

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jeslipp commented Oct 6, 2017

more cores added for align and count step.

pigz requires change of docker container (add pigz).

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