diff --git a/wdl/pipelines/HGSVC2Download.wdl b/wdl/pipelines/HGSVC2Download.wdl
deleted file mode 100755
index 607f397..0000000
--- a/wdl/pipelines/HGSVC2Download.wdl
+++ /dev/null
@@ -1,101 +0,0 @@
-version 1.0
-
-
-#
-workflow HGSVC2Download {
-    input {
-        Array[String] sample_ids
-        Array[File] bam_addresses
-        Int target_coverage
-        String remote_dir
-        Int n_cpus
-        Int ram_size_gb
-    }
-    parameter_meta {
-        remote_dir: "Root directory in the remote bucket. Every sample is stored in a subdirectory."
-    }
-    
-    scatter(i in range(length(sample_ids))) {
-        call HGSVC2DownloadImpl {
-            input:
-                sample_id = sample_ids[i],
-                bam_addresses = bam_addresses[i],
-                target_coverage = target_coverage,
-                remote_dir = remote_dir,
-                n_cpus = n_cpus,
-                ram_size_gb = ram_size_gb
-        }
-    }
-    
-    output {
-    }
-}
-
-
-task HGSVC2DownloadImpl {
-    input {
-        String sample_id
-        File bam_addresses
-        Int target_coverage
-        String remote_dir
-        Int n_cpus
-        Int ram_size_gb
-    }
-    parameter_meta {
-    }
-    
-    Int disk_size_gb = (3*target_coverage)*2 + 120
-    String docker_dir = "/hgsvc2"
-    String work_dir = "/cromwell_root/hgsvc2"
-    
-    command <<<
-        set -euxo pipefail
-        mkdir -p ~{work_dir}
-        cd ~{work_dir}
-        
-        GSUTIL_UPLOAD_THRESHOLD="-o GSUtil:parallel_composite_upload_threshold=150M"
-        GSUTIL_DELAY_S="600"
-        TIME_COMMAND="/usr/bin/time --verbose"
-        N_SOCKETS="$(lscpu | grep '^Socket(s):' | awk '{print $NF}')"
-        N_CORES_PER_SOCKET="$(lscpu | grep '^Core(s) per socket:' | awk '{print $NF}')"
-        N_THREADS=$(( 2 * ${N_SOCKETS} * ${N_CORES_PER_SOCKET} ))
-        
-        TARGET_N_BYTES=$(( ~{target_coverage} * 3000000000 * 2 ))
-        touch tmp1.fastq
-        while read ADDRESS; do
-            ${TIME_COMMAND} wget ${ADDRESS}
-            FILE_NAME=$(basename ${ADDRESS})
-            FILE_NAME=${FILE_NAME%.bam}
-            ${TIME_COMMAND} samtools fastq -@ ${N_THREADS} -n >> tmp1.fastq 
-            N_BYTES=$(wc -c tmp1.fastq)
-            if [ ${N_BYTES} -gt ${TARGET_N_BYTES} ]; then
-                break
-            fi
-        done < ~{bam_addresses}
-        head -c ${TARGET_N_BYTES} tmp1.fastq > tmp2.fastq
-        rm -f tmp1.fastq
-        N_ROWS=$(wc -l < tmp2.fastq)
-        N_ROWS=$(( (${N_ROWS}/4)*4 ))
-        head -n ${N_ROWS} tmp2.fastq | gzip > ~{sample_id}.fastq.gz
-        rm -f tmp2.fastq
-        while : ; do
-            TEST=$(gsutil ${GSUTIL_UPLOAD_THRESHOLD} -m cp ~{sample_id}.fastq.gz ~{remote_dir}/~{sample_id}/ && echo 0 || echo 1)
-            if [ ${TEST} -eq 1 ]; then
-                echo "Error uploading files. Trying again..."
-                sleep ${GSUTIL_DELAY_S}
-            else
-                break
-            fi
-        done
-    >>>
-    
-    output {
-    }
-    runtime {
-        docker: "fcunial/hgsvc2"
-        cpu: n_cpus
-        memory: ram_size_gb + "GB"
-        disks: "local-disk " + disk_size_gb + " HDD"
-        preemptible: 0
-    }
-}