pyproject.toml

[build-system]
build-backend = "setuptools.build_meta"
requires = [
    "setuptools",
    "wheel",
]

[project]
name = 'local_pcangsd'
version = '0.0.2'
authors = [
    {name = "Alexis Simon", email = "alexis.simon@normalesup.org"},
]
description = "Perform local PCA on low-coverage data."
readme = 'README.md'
requires-python = '>=3.6,<3.10'
license = {text = "MIT"}
classifiers = [
    'Development Status :: 1 - Planning',
    'Programming Language :: Python :: 3',
    'License :: OSI Approved :: MIT License',
    'Operating System :: OS Independent',
    'Topic :: Scientific/Engineering :: Bio-Informatics',
]

# Too much of a mess dealing with dependencies, use conda
# dependencies = [
#     'pandas',
#     'dask',
#     'xarray',
#     'sgkit>=0.5',
#     'numpy<1.22',
#     'scipy<1.10',
#     'pcangsd @ git+https://github.com/alxsimon/pcangsd.git',# fork for install
# ]

[project.optional-dependencies]
doc = [
    "sphinx>4,<=4.2.0",
    "sphinx_autodoc_typehints>=1.14.0",
    "sphinx-book-theme",
    "pydata-sphinx-theme",
]

[project.scripts]
local_pcangsd = 'lp_cli:main'

[project.urls]
documentation = 'https://alxsimon.github.io/local_pcangsd'
repository = 'https://github.com/alxsim/local_pcangsd'