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manual_SPECFEM3D_GLOBE.tex
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\documentclass[oneside,english]{book}
\usepackage[T1]{fontenc}
%% DK DK we do not accept accented letters, use the old LaTeX syntax
%% DK DK for them instead: \'e \`e \"e \^e and so on.
%% DK DK \usepackage[latin1]{inputenc}
\usepackage[letterpaper]{geometry}
\geometry{verbose,tmargin=1in,bmargin=1in,lmargin=1in,rmargin=1in}
% table of contents and numbering
\usepackage{tocbibind}
\setcounter{secnumdepth}{3}
\setcounter{tocdepth}{3}
\usepackage{babel}
\usepackage{float}
\usepackage{textcomp}
\usepackage{amsmath}
\usepackage{amssymb}
\IfFileExists{url.sty}{\usepackage{url}}
{\newcommand{\url}{\texttt}}
% biblio
\usepackage[authoryear]{natbib}
% biblio GJI
\bibliographystyle{abbrvnat}
% fonts
\usepackage{times}
% figures
\usepackage[pdftex]{graphicx}
% we are running pdflatex, so convert .eps files to .pdf
%\usepackage{epstopdf}
% colors to show the corrections
\usepackage[dvipsnames,usenames]{xcolor}
\definecolor{light-gray}{rgb}{0.7,0.7,0.7}
\definecolor{dark-gray}{rgb}{0.1,0.1,0.3}
\definecolor{light-blue}{rgb}{0.7,0.7,0.9}
\definecolor{dark-blue}{rgb}{0.2,0.2,0.5}
% hyperlinks to sections and references
\usepackage[pdftex]{hyperref}
% more options
\hypersetup{
bookmarks=true,
bookmarksnumbered=true,
pdfpagemode=UseNone,
pdfstartview=FitH,
pdfpagelayout=SinglePage,
pdfborder={0 0 0},
colorlinks=true, % color links
citecolor=dark-gray, % citation links
filecolor=dark-gray, % file links
linkcolor=dark-gray, % internal link (rgb values)
urlcolor=dark-blue % external weblinks
}
% tables
\usepackage{longtable}
\usepackage{varioref}
\usepackage{booktabs}
% Latex generated graphics
\usepackage{tikz}
\usetikzlibrary{trees}
% create thumbnails
%\usepackage[pdftex]{thumbpdf}
\makeatletter
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% LyX specific LaTeX commands.
%% Because html converters don't know tabularnewline
\providecommand{\tabularnewline}{\\}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% Textclass specific LaTeX commands.
\newenvironment{lyxcode}
{\begin{list}{}{
\setlength{\rightmargin}{\leftmargin}
\setlength{\listparindent}{0pt}% needed for AMS classes
\raggedright
\setlength{\itemsep}{0pt}
\setlength{\parsep}{0pt}
\normalfont\ttfamily}%
\item[]}
{\end{list}}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% User specified LaTeX commands.
% colors for the text
\newcommand{\red}[1]{\textcolor{Red}{#1}}
% hyperlinks to sections and references
\newcommand{\urlwithparentheses}[1]{(\url{#1})}
\newcommand{\toall}[1]{\textbf{*** All: #1 ***}}
\newcommand{\tojeroen}[1]{\textbf{*** Jeroen: #1 ***}}
\newcommand{\tobrian}[1]{\textbf{*** Brian: #1 ***}}
\newcommand{\tovala}[1]{\textbf{*** Vala: #1 ***}}
\newcommand{\tovalabrian}[1]{\textbf{*** Vala \& Brian: #1 ***}}
\newcommand{\tovalaqinya}[1]{\textbf{*** Vala \& Qinya: #1 ***}}
\newcommand{\toqinya}[1]{\textbf{*** Qinya: #1 ***}}
\newcommand{\tomin}[1]{\textbf{*** Min: #1 ***}}
\newcommand{\toalessia}[1]{\textbf{*** Alessia: #1 ***}}
\newcommand{\todimitri}[1]{\textbf{*** Dimitri: #1 ***}}
\newcommand{\nexxi}{\mbox{\texttt{NEX\_XI}}}
\newcommand{\nexeta}{\mbox{\texttt{NEX\_ETA}}}
\newcommand{\nprocxi}{\mbox{\texttt{NPROC\_XI}}}
\newcommand{\nproceta}{\mbox{\texttt{NPROC\_ETA}}}
\newcommand{\nchunks}{\mbox{\texttt{NCHUNKS}}}
% BibTeX logo
\newcommand{\BibTeX}{{\rm B\kern-.05em{\sc i\kern-.025em b}\kern-.08em{T}\kern-.1667em\lower.7ex\hbox{E}\kern-.125emX}}
\makeatother
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% Start of document.
\begin{document}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% Title
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\thispagestyle{empty}
\begin{center}
\vspace*{-1.8truecm}
\noindent\makebox[\textwidth]{\noindent\includegraphics[width=0.83\paperwidth]{figures/specfem_3d_globe-cover.pdf}}
\end{center}
%
\title{\thispagestyle{empty}\textbf{SPECFEM3D\_GLOBE}\\
\textbf{User Manual}}
%
\author{$\copyright$ Princeton University (USA) and CNRS / University of Marseille (France),\\
ETH Z\"urich (Switzerland),\\
Version 8 . 0
}
% date of last edit
\date{\today}
\maketitle
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\include{authors}
\newpage{}
\include{sponsors}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% Table of contents
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\newpage{}
\tableofcontents{}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\include{01_introduction}
\include{02_getting_started}
\include{03_running_the_mesher}
\include{04_running_the_solver}
\include{05_regional_simulations}
\include{06_adjoint_simulations}
\include{07_doing_tomography}
\include{08_noise_simulations}
\include{09_gravity_calculations}
\include{10_graphics}
\include{11_running_scheduler}
\include{12_changing_the_model}
\include{13_post_processing}
\include{14_informations_for_developers}
\include{features}
\include{bug_reports}
\include{notes_and_acknowledgement}
\include{copyright_and_version}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% Bibliography
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\bibliography{bibliography}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% Appendix
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\appendix
%dummy comment inserted by tex2lyx to ensure that this paragraph is not empty
\include{A_reference_frame}
\include{B_non-dimensionalization_conventions}
\include{C_benchmarks}
\include{D_SAC_headers}
\include{E_channel_codes}
\include{F_troubleshooting}
\include{G_license}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\end{document}