update_data.yml

name: Daily update data
on:
  schedule:
    - cron: '0 14 * * *'
  workflow_dispatch:

jobs:
  update-data:
    runs-on: ubuntu-latest
    steps:
    - name: Checkout source code
      uses: actions/checkout@v3

    - name: Setup python
      uses: actions/setup-python@v4
      with:
        python-version: '3.9'
        cache: 'pip'
        cache-dependency-path: '.github/env/requirements.txt'

    - name: Install dependencies
      run: |
        sudo apt-get update -qq
        sudo apt-get install libkrb5-dev
        python -m pip install --upgrade pip
        pip install -r .github/env/requirements.txt

    - name: Update sequences
      run: |
        python .github/scripts/update_seqs.py

    - name: Update cases
      continue-on-error: true
      run: |
        python .github/scripts/update_cases.py

    - name: Save new cases
      uses: actions/upload-artifact@v3
      with:
        name: NewCases
        path: new_cases.csv

    - name: Verify Changed files
      uses: tj-actions/verify-changed-files@v13
      id: verify-changed-files
      with:
        files: |
          resources/sequences.csv
          resources/cases.csv

    - name: Update growth rates
      run: | 
        python .github/scripts/update_growth_rates.py

    - name: Commit changed files
      if: steps.verify-changed-files.outputs.files_changed == 'true'
      run: |
        git config --global user.name 'watronfire'
        git config --global user.email 'snowboardman007@gmail.com'
        git commit -am "Automated update of cases and sequences on $(date +'%Y-%m-%d')"
        git push