You can install the development version of codexchain from
GitHub with:
# install.packages("devtools")devtools :: install_github(" andrewallenbruce/codexchain" # install.packages("remotes")remotes :: install_github(" andrewallenbruce/codexchain" # load librarycodexchain )National Library of Medicine’s ICD-10-CM 2023 API The International Classification of Diseases, 10th Revision, Clinical
Modification is the American modification of the World Health
Organization’s ICD-10, a medical coding system for classifying diagnoses
and reasons for healthcare visits.
Return the seven ICD-10-CM codes beginning with “A15”
codex_icd10(code = " A15" | >
gluedown :: md_table()
icd_10_cm_code
icd_10_cm_term
A15.0
Tuberculosis of lung
A15.4
Tuberculosis of intrathoracic lymph nodes
A15.5
Tuberculosis of larynx, trachea and bronchus
A15.6
Tuberculous pleurisy
A15.7
Primary respiratory tuberculosis
A15.8
Other respiratory tuberculosis
A15.9
Respiratory tuberculosis unspecified
Return the first 20 ICD-10-CM codes associated with tuberculosis
codex_icd10(term = " tuber" limit = 20 ) | >
gluedown :: md_table()
icd_10_cm_code
icd_10_cm_term
A15.0
Tuberculosis of lung
A15.4
Tuberculosis of intrathoracic lymph nodes
A15.5
Tuberculosis of larynx, trachea and bronchus
A15.6
Tuberculous pleurisy
A15.7
Primary respiratory tuberculosis
A15.8
Other respiratory tuberculosis
A15.9
Respiratory tuberculosis unspecified
A17.0
Tuberculous meningitis
A17.1
Meningeal tuberculoma
A17.81
Tuberculoma of brain and spinal cord
A17.82
Tuberculous meningoencephalitis
A17.83
Tuberculous neuritis
A17.89
Other tuberculosis of nervous system
A17.9
Tuberculosis of nervous system, unspecified
A18.01
Tuberculosis of spine
A18.02
Tuberculous arthritis of other joints
A18.03
Tuberculosis of other bones
A18.09
Other musculoskeletal tuberculosis
A18.10
Tuberculosis of genitourinary system, unspecified
A18.11
Tuberculosis of kidney and ureter
Return the two ICD-10-CM codes associated with pleurisy
codex_icd10(term = " pleurisy" | >
gluedown :: md_table()
icd_10_cm_code
icd_10_cm_term
R09.1
Pleurisy
A15.6
Tuberculous pleurisy
When searching for ICD-10-CM codes by letter, you must set the field
param to “code” or it will search for terms containing the letter as
well. For example, without field = "code", the following returns terms
containing the letter “Z”:
codex_icd10(code = " Z" limit = 10 ) | >
gluedown :: md_table()
icd_10_cm_code
icd_10_cm_term
A28.8
Other specified zoonotic bacterial diseases, not elsewhere classified
A28.9
Zoonotic bacterial disease, unspecified
A92.5
Zika virus disease
B02.0
Zoster encephalitis
B02.1
Zoster meningitis
B02.30
Zoster ocular disease, unspecified
B02.31
Zoster conjunctivitis
B02.32
Zoster iridocyclitis
B02.33
Zoster keratitis
B02.34
Zoster scleritis
With field = "code", it returns only codes containing “Z”:
codex_icd10(code = " z" field = " code" limit = 10 ) | >
gluedown :: md_table()
icd_10_cm_code
icd_10_cm_term
Z00.00
Encounter for general adult medical examination without abnormal findings
Z00.01
Encounter for general adult medical examination with abnormal findings
Z00.110
Health examination for newborn under 8 days old
Z00.111
Health examination for newborn 8 to 28 days old
Z00.121
Encounter for routine child health examination with abnormal findings
Z00.129
Encounter for routine child health examination without abnormal findings
Z00.2
Encounter for examination for period of rapid growth in childhood
Z00.3
Encounter for examination for adolescent development state
Z00.5
Encounter for examination of potential donor of organ and tissue
Z00.6
Encounter for examination for normal comparison and control in clinical research program
codex_icd10(term = " bmi adult" limit = 30 ) | >
gluedown :: md_table()
icd_10_cm_code
icd_10_cm_term
Z68.45
Body mass index [BMI] 70 or greater, adult
Z68.1
Body mass index [BMI] 19.9 or less, adult
Z68.20
Body mass index [BMI] 20.0-20.9, adult
Z68.21
Body mass index [BMI] 21.0-21.9, adult
Z68.22
Body mass index [BMI] 22.0-22.9, adult
Z68.23
Body mass index [BMI] 23.0-23.9, adult
Z68.24
Body mass index [BMI] 24.0-24.9, adult
Z68.25
Body mass index [BMI] 25.0-25.9, adult
Z68.26
Body mass index [BMI] 26.0-26.9, adult
Z68.27
Body mass index [BMI] 27.0-27.9, adult
Z68.28
Body mass index [BMI] 28.0-28.9, adult
Z68.29
Body mass index [BMI] 29.0-29.9, adult
Z68.30
Body mass index [BMI] 30.0-30.9, adult
Z68.31
Body mass index [BMI] 31.0-31.9, adult
Z68.32
Body mass index [BMI] 32.0-32.9, adult
Z68.33
Body mass index [BMI] 33.0-33.9, adult
Z68.34
Body mass index [BMI] 34.0-34.9, adult
Z68.35
Body mass index [BMI] 35.0-35.9, adult
Z68.36
Body mass index [BMI] 36.0-36.9, adult
Z68.37
Body mass index [BMI] 37.0-37.9, adult
Z68.38
Body mass index [BMI] 38.0-38.9, adult
Z68.39
Body mass index [BMI] 39.0-39.9, adult
Z68.41
Body mass index [BMI] 40.0-44.9, adult
Z68.42
Body mass index [BMI] 45.0-49.9, adult
Z68.43
Body mass index [BMI] 50.0-59.9, adult
Z68.44
Body mass index [BMI] 60.0-69.9, adult
NHANES :: NHANES | >
dplyr :: slice_sample(n = 30 ) | >
janitor :: clean_names() | >
dplyr :: filter(age > = 20 ) | >
dplyr :: select(age , weight , height ) | >
dplyr :: mutate(
weight = units :: set_units(weight , kg ),
height = units :: set_units(height , cm ),
body_mass_index = bmi_adult(weight = weight , height = height ),
icd_10_code = assign_bmi_icd(body_mass_index ),
bmi_status = assign_bmi_status(body_mass_index )) | >
gluedown :: md_table()
age
weight
height
body_mass_index
icd_10_code
bmi_status
62
99.0 [kg]
166.1 [cm]
35.88359 [kg/m^2]
Z68.35
Obese
79
103.6 [kg]
172.6 [cm]
34.77588 [kg/m^2]
Z68.34
Obese
47
87.6 [kg]
174.7 [cm]
28.70241 [kg/m^2]
Z68.28
Overweight
68
72.7 [kg]
159.2 [cm]
28.68457 [kg/m^2]
Z68.28
Overweight
52
58.7 [kg]
146.4 [cm]
27.38772 [kg/m^2]
Z68.27
Overweight
53
87.5 [kg]
163.7 [cm]
32.65207 [kg/m^2]
Z68.32
Obese
61
71.5 [kg]
160.6 [cm]
27.72139 [kg/m^2]
Z68.27
Overweight
73
66.8 [kg]
157.3 [cm]
26.99722 [kg/m^2]
Z68.26
Overweight
49
74.6 [kg]
177.1 [cm]
23.78492 [kg/m^2]
Z68.23
Healthy Weight
59
95.4 [kg]
173.7 [cm]
31.61904 [kg/m^2]
Z68.31
Obese
24
66.8 [kg]
164.4 [cm]
24.71570 [kg/m^2]
Z68.24
Healthy Weight
57
81.1 [kg]
165.9 [cm]
29.46647 [kg/m^2]
Z68.29
Overweight
52
83.9 [kg]
170.4 [cm]
28.89501 [kg/m^2]
Z68.28
Overweight
31
136.3 [kg]
180.9 [cm]
41.65036 [kg/m^2]
Z68.41
Obese
70
84.0 [kg]
180.5 [cm]
25.78249 [kg/m^2]
Z68.25
Overweight
52
39.3 [kg]
144.3 [cm]
18.87382 [kg/m^2]
Z68.1
Healthy Weight
76
69.4 [kg]
150.5 [cm]
30.63984 [kg/m^2]
Z68.30
Obese
32
87.2 [kg]
177.1 [cm]
27.80221 [kg/m^2]
Z68.27
Overweight
52
55.8 [kg]
160.7 [cm]
21.60740 [kg/m^2]
Z68.21
Healthy Weight
NLM’s MedlinePlus Connect API rx <- codex_medline(code_title = " Chantix 0.5 MG Oral Tablet" code_system = " rxcui" rx | > dplyr :: mutate(dplyr :: across(everything(), as.character )) | >
tidyr :: pivot_longer(cols = dplyr :: everything()) | >
gluedown :: md_table()
name
value
updated
2023-01-16 16:23:23
entry_title
Varenicline
source
U.S. National Library of Medicine
search_description
, RXNORM, Chantix 0.5 MG Oral Tablet, PAT
results_description
MedlinePlus Connect results for RXCUI
entry_link
https://medlineplus.gov/druginfo/meds/a606024.html?utm_source=mplusconnect&utm_medium=service
entry_summary
Varenicline is used along with education and counseling to help people stop smoking. Varenicline is in a class of medications called smoking cessation aids. It works by blocking the pleasant effects of nicotine (from smoking) on the brain.
Medicare Fee-for-Service Comprehensive Error Rate Testing API codex_cert(hcpcs = " 81595" decision = " Disagree" | >
dplyr :: select(- type_of_bill ,
- drg ,
- claim_control_number ) | >
gluedown :: md_table()
year
part
hcpcs_procedure_code
provider_type
review_decision
error_code
2021
1. Part B
81595
Clinical Laboratory (Billing Independently)
Disagree
Insufficient Documentation
2021
1. Part B
81595
Clinical Laboratory (Billing Independently)
Disagree
Insufficient Documentation
2021
1. Part B
81595
Clinical Laboratory (Billing Independently)
Disagree
Insufficient Documentation
2021
1. Part B
81595
Clinical Laboratory (Billing Independently)
Disagree
Insufficient Documentation
2021
1. Part B
81595
Clinical Laboratory (Billing Independently)
Disagree
Insufficient Documentation
2021
1. Part B
81595
Clinical Laboratory (Billing Independently)
Disagree
Insufficient Documentation
2021
1. Part B
81595
Clinical Laboratory (Billing Independently)
Disagree
Insufficient Documentation
2021
1. Part B
81595
Clinical Laboratory (Billing Independently)
Disagree
Insufficient Documentation
2021
1. Part B
81595
Clinical Laboratory (Billing Independently)
Disagree
Insufficient Documentation
2021
1. Part B
81595
Clinical Laboratory (Billing Independently)
Disagree
Insufficient Documentation
NCCI Procedure-to-Procedure Edits (PTP) API codex_ptp(column_1 = " 29000" | >
dplyr :: select(- record_number ) | >
head() | >
gluedown :: md_table()
quarter_begin_date
category
column_1
column_2
effective_date
deletion_date
modifier_indicator
ptp_edit_rationale
2022-10-01
DME Services
29000
29010
2013-04-01
NA
0
Mutually exclusive procedures
2022-10-01
DME Services
29000
29015
2013-04-01
NA
0
Mutually exclusive procedures
2022-10-01
DME Services
29000
29020
2013-04-01
2014-12-31
0
Mutually exclusive procedures
2022-10-01
DME Services
29000
29025
2013-04-01
2014-12-31
0
Mutually exclusive procedures
2022-10-01
DME Services
29000
29035
2013-04-01
NA
0
Mutually exclusive procedures
2022-10-01
DME Services
29000
29040
2013-04-01
NA
0
Mutually exclusive procedures
codex_ptp(column_2 = " L1951" | >
dplyr :: select(- record_number ) | >
head() | >
gluedown :: md_table()
quarter_begin_date
category
column_1
column_2
effective_date
deletion_date
modifier_indicator
ptp_edit_rationale
2022-10-01
DME Services
29305
L1951
2013-04-01
NA
1
Mutually exclusive procedures
2022-10-01
DME Services
29325
L1951
2013-04-01
NA
0
Mutually exclusive procedures
2022-10-01
DME Services
29345
L1951
2013-04-01
NA
1
Mutually exclusive procedures
2022-10-01
DME Services
29355
L1951
2013-04-01
NA
1
Mutually exclusive procedures
2022-10-01
DME Services
29358
L1951
2013-04-01
NA
1
Mutually exclusive procedures
2022-10-01
DME Services
29365
L1951
2013-04-01
NA
1
Mutually exclusive procedures
codex_ptp(category = " DME Services" | >
dplyr :: select(- record_number ) | >
head() | >
gluedown :: md_table()
quarter_begin_date
category
column_1
column_2
effective_date
deletion_date
modifier_indicator
ptp_edit_rationale
2022-10-01
DME Services
29000
29010
2013-04-01
NA
0
Mutually exclusive procedures
2022-10-01
DME Services
29000
29015
2013-04-01
NA
0
Mutually exclusive procedures
2022-10-01
DME Services
29000
29020
2013-04-01
2014-12-31
0
Mutually exclusive procedures
2022-10-01
DME Services
29000
29025
2013-04-01
2014-12-31
0
Mutually exclusive procedures
2022-10-01
DME Services
29000
29035
2013-04-01
NA
0
Mutually exclusive procedures
2022-10-01
DME Services
29000
29040
2013-04-01
NA
0
Mutually exclusive procedures
codex_ptp(modifier_indicator = " 0" | >
dplyr :: select(- record_number ) | >
head() | >
gluedown :: md_table()
quarter_begin_date
category
column_1
column_2
effective_date
deletion_date
modifier_indicator
ptp_edit_rationale
2022-10-01
DME Services
29000
29010
2013-04-01
NA
0
Mutually exclusive procedures
2022-10-01
DME Services
29000
29015
2013-04-01
NA
0
Mutually exclusive procedures
2022-10-01
DME Services
29000
29020
2013-04-01
2014-12-31
0
Mutually exclusive procedures
2022-10-01
DME Services
29000
29025
2013-04-01
2014-12-31
0
Mutually exclusive procedures
2022-10-01
DME Services
29000
29035
2013-04-01
NA
0
Mutually exclusive procedures
2022-10-01
DME Services
29000
29040
2013-04-01
NA
0
Mutually exclusive procedures
codex_ptp(column_1 = " 29000" modifier_indicator = " 1" | >
dplyr :: select(- record_number ) | >
head() | >
gluedown :: md_table()
quarter_begin_date
category
column_1
column_2
effective_date
deletion_date
modifier_indicator
ptp_edit_rationale
2022-10-01
Outpatient Hospital Services
29000
0213T
2010-10-01
NA
1
Misuse of column two code with column one code
2022-10-01
Outpatient Hospital Services
29000
0214T
2015-10-01
NA
1
Misuse of column two code with column one code
2022-10-01
Outpatient Hospital Services
29000
0215T
2015-10-01
NA
1
Misuse of column two code with column one code
2022-10-01
Outpatient Hospital Services
29000
0216T
2010-10-01
NA
1
Misuse of column two code with column one code
2022-10-01
Outpatient Hospital Services
29000
0217T
2015-10-01
NA
1
Misuse of column two code with column one code
2022-10-01
Outpatient Hospital Services
29000
0218T
2015-10-01
NA
1
Misuse of column two code with column one code
codex_ptp(ptp_edit_rationale = " Mutually exclusive procedures" explain = TRUE ) | >
dplyr :: select(- record_number ) | >
head() | >
gluedown :: md_table()
quarter_begin_date
category
hcpcs_comprehensive
hcpcs_component
effective_date
deletion_date
modifier_use
reasoning
2022-10-01
DME Services
29000
29010
2013-04-01
NA
Allowed (0)
Mutually exclusive procedures
2022-10-01
DME Services
29000
29015
2013-04-01
NA
Allowed (0)
Mutually exclusive procedures
2022-10-01
DME Services
29000
29020
2013-04-01
2014-12-31
Allowed (0)
Mutually exclusive procedures
2022-10-01
DME Services
29000
29025
2013-04-01
2014-12-31
Allowed (0)
Mutually exclusive procedures
2022-10-01
DME Services
29000
29035
2013-04-01
NA
Allowed (0)
Mutually exclusive procedures
2022-10-01
DME Services
29000
29040
2013-04-01
NA
Allowed (0)
Mutually exclusive procedures
NCCI Medically Unlikely Edits (MUEs) API codex_mue(category = " Practitioner Services" hcpcscpt_code = " G0121" | >
dplyr :: select(- record_number ) | >
dplyr :: arrange(desc(quarter_begin_date )) | >
gluedown :: md_table()
quarter_begin_date
category
hcpcs_code
mue_value
mue_rationale
2022-10-01
Practitioner Services
G0121
1
Anatomic Consideration
2022-07-01
Practitioner Services
G0121
1
Anatomic Consideration
2022-04-01
Practitioner Services
G0121
1
Anatomic Consideration
2022-01-01
Practitioner Services
G0121
1
Anatomic Consideration
2021-10-01
Practitioner Services
G0121
1
Anatomic Consideration
2021-07-01
Practitioner Services
G0121
1
Anatomic Consideration
2021-04-01
practitioner services
G0121
1
Anatomic Consideration
2021-01-01
Practitioner Services
G0121
1
Anatomic Consideration
2020-10-01
Practitioner Services
G0121
1
Anatomic Consideration
2020-07-01
Practitioner Services
G0121
1
Anatomic Consideration
2020-04-01
Practitioner Services
G0121
1
Anatomic Consideration
2020-01-01
Practitioner Services
G0121
1
Anatomic Consideration
2019-10-01
Practitioner Services
G0121
1
Anatomic Consideration
2019-07-01
Practitioner Services
G0121
1
Anatomic Consideration
2019-04-01
Practitioner Services
G0121
1
Anatomic Consideration
2019-01-01
Practitioner Services
G0121
1
Anatomic Consideration
2018-10-01
Practitioner Services
G0121
1
Anatomic Consideration
2018-07-01
Practitioner Services
G0121
1
Anatomic Consideration
2018-04-01
Practitioner Services
G0121
1
Anatomic Consideration
2018-01-01
Practitioner Services
G0121
1
Anatomic Consideration
codex_mue(category = " DME Services" mue_value = " 2" mue_rationale = " Code Descriptor / CPT Instruction" | >
dplyr :: select(- record_number ) | >
dplyr :: filter(quarter_begin_date > = as.Date(" 2022-10-01" | >
dplyr :: arrange(desc(quarter_begin_date )) | >
gluedown :: md_table()
quarter_begin_date
category
hcpcs_code
mue_value
mue_rationale
2022-10-01
DME Services
A4635
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
A4636
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
E0111
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
E0113
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
E0116
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
E0117
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
E0154
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
E0157
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
E0159
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
E0175
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
E0310
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
E0952
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
E0959
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
E0960
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
E0961
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
E0973
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
E0974
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
E1020
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
E2205
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
E2206
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
E2207
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
E2211
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
E2212
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
E2213
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
E2216
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
E2218
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
E2220
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
E2224
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
E2227
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
E2228
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
E2358
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
E2359
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
E2361
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
E2363
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
E2365
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
E2368
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
E2369
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
E2370
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
E2371
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
E2381
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
E2382
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
E2383
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
E2386
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
E2388
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
E2390
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
E2619
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
K0051
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
K0065
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
K0069
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
K0070
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
K0071
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
K0072
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
K0077
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
K0733
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
L1070
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
L1080
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
L1100
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
L1110
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
L2182
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
L2184
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
L2186
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
L3600
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
L3610
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
L3620
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
L3630
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
L5280
2
Code Descriptor / CPT Instruction
2022-10-01
DME Services
L5341
2
Code Descriptor / CPT Instruction
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