Attempt 1 for scikit-learn__scikit-learn-13439
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Ensuring base repo exists for URL: https://github.com/scikit-learn/scikit-learn
Collecting pip
Using cached https://files.pythonhosted.org/packages/a4/6d/6463d49a933f547439d6b5b98b46af8742cc03ae83543e4d7688c2420f8b/pip-21.3.1-py3-none-any.whl
Collecting setuptools
Using cached https://files.pythonhosted.org/packages/b0/3a/88b210db68e56854d0bcf4b38e165e03be377e13907746f825790f3df5bf/setuptools-59.6.0-py3-none-any.whl
Collecting wheel
Using cached https://files.pythonhosted.org/packages/27/d6/003e593296a85fd6ed616ed962795b2f87709c3eee2bca4f6d0fe55c6d00/wheel-0.37.1-py2.py3-none-any.whl
Installing collected packages: pip, setuptools, wheel
Found existing installation: pip 18.1
Uninstalling pip-18.1:
Successfully uninstalled pip-18.1
Found existing installation: setuptools 40.6.2
Uninstalling setuptools-40.6.2:
Successfully uninstalled setuptools-40.6.2
Successfully installed pip-21.3.1 setuptools-59.6.0 wheel-0.37.1
Obtaining file:///home/ari/repos/swe-lite-raid/repos/venvs/scikit-learn_scikit-learn_7813f7efb5b2012412888b69e73d76f2df2b50b6
Preparing metadata (setup.py) ... done
Collecting numpy>=1.11.0
Downloading numpy-1.19.5-cp36-cp36m-manylinux2010_x86_64.whl (14.8 MB)
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Collecting scipy>=0.17.0
Downloading scipy-1.5.4-cp36-cp36m-manylinux1_x86_64.whl (25.9 MB)
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Collecting joblib>=0.11
Downloading joblib-1.1.1-py2.py3-none-any.whl (309 kB)
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Installing collected packages: numpy, scipy, joblib, scikit-learn
Running setup.py develop for scikit-learn
ERROR: Command errored out with exit status 1:
command: /home/ari/repos/swe-lite-raid/repos/venvs/scikit-learn_scikit-learn_7813f7efb5b2012412888b69e73d76f2df2b50b6/.venv/bin/python -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/home/ari/repos/swe-lite-raid/repos/venvs/scikit-learn_scikit-learn_7813f7efb5b2012412888b69e73d76f2df2b50b6/setup.py'"'"'; __file__='"'"'/home/ari/repos/swe-lite-raid/repos/venvs/scikit-learn_scikit-learn_7813f7efb5b2012412888b69e73d76f2df2b50b6/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' develop --no-deps
cwd: /home/ari/repos/swe-lite-raid/repos/venvs/scikit-learn_scikit-learn_7813f7efb5b2012412888b69e73d76f2df2b50b6/
Complete output (43 lines):
blas_opt_info:
blas_mkl_info:
customize UnixCCompiler
FOUND:
libraries = ['mkl_rt', 'pthread']
library_dirs = ['/opt/intel/oneapi/mkl/latest/lib']
define_macros = [('SCIPY_MKL_H', None), ('HAVE_CBLAS', None)]
include_dirs = ['/opt/intel/oneapi/mkl/latest', '/opt/intel/oneapi/mkl/latest/include', '/opt/intel/oneapi/mkl/latest/lib']
FOUND:
libraries = ['mkl_rt', 'pthread']
library_dirs = ['/opt/intel/oneapi/mkl/latest/lib']
define_macros = [('SCIPY_MKL_H', None), ('HAVE_CBLAS', None)]
include_dirs = ['/opt/intel/oneapi/mkl/latest', '/opt/intel/oneapi/mkl/latest/include', '/opt/intel/oneapi/mkl/latest/lib']
Partial import of sklearn during the build process.
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/home/ari/repos/swe-lite-raid/repos/venvs/scikit-learn_scikit-learn_7813f7efb5b2012412888b69e73d76f2df2b50b6/setup.py", line 290, in <module>
setup_package()
File "/home/ari/repos/swe-lite-raid/repos/venvs/scikit-learn_scikit-learn_7813f7efb5b2012412888b69e73d76f2df2b50b6/setup.py", line 286, in setup_package
setup(**metadata)
File "/home/ari/repos/swe-lite-raid/repos/venvs/scikit-learn_scikit-learn_7813f7efb5b2012412888b69e73d76f2df2b50b6/.venv/lib/python3.6/site-packages/numpy/distutils/core.py", line 135, in setup
config = configuration()
File "/home/ari/repos/swe-lite-raid/repos/venvs/scikit-learn_scikit-learn_7813f7efb5b2012412888b69e73d76f2df2b50b6/setup.py", line 174, in configuration
config.add_subpackage('sklearn')
File "/home/ari/repos/swe-lite-raid/repos/venvs/scikit-learn_scikit-learn_7813f7efb5b2012412888b69e73d76f2df2b50b6/.venv/lib/python3.6/site-packages/numpy/distutils/misc_util.py", line 1020, in add_subpackage
caller_level = 2)
File "/home/ari/repos/swe-lite-raid/repos/venvs/scikit-learn_scikit-learn_7813f7efb5b2012412888b69e73d76f2df2b50b6/.venv/lib/python3.6/site-packages/numpy/distutils/misc_util.py", line 989, in get_subpackage
caller_level = caller_level + 1)
File "/home/ari/repos/swe-lite-raid/repos/venvs/scikit-learn_scikit-learn_7813f7efb5b2012412888b69e73d76f2df2b50b6/.venv/lib/python3.6/site-packages/numpy/distutils/misc_util.py", line 926, in _get_configuration_from_setup_py
config = setup_module.configuration(*args)
File "sklearn/setup.py", line 66, in configuration
config.add_subpackage('utils')
File "/home/ari/repos/swe-lite-raid/repos/venvs/scikit-learn_scikit-learn_7813f7efb5b2012412888b69e73d76f2df2b50b6/.venv/lib/python3.6/site-packages/numpy/distutils/misc_util.py", line 1020, in add_subpackage
caller_level = 2)
File "/home/ari/repos/swe-lite-raid/repos/venvs/scikit-learn_scikit-learn_7813f7efb5b2012412888b69e73d76f2df2b50b6/.venv/lib/python3.6/site-packages/numpy/distutils/misc_util.py", line 989, in get_subpackage
caller_level = caller_level + 1)
File "/home/ari/repos/swe-lite-raid/repos/venvs/scikit-learn_scikit-learn_7813f7efb5b2012412888b69e73d76f2df2b50b6/.venv/lib/python3.6/site-packages/numpy/distutils/misc_util.py", line 926, in _get_configuration_from_setup_py
config = setup_module.configuration(*args)
File "sklearn/utils/setup.py", line 8, in configuration
from Cython import Tempita
ModuleNotFoundError: No module named 'Cython'
----------------------------------------
ERROR: Command errored out with exit status 1: /home/ari/repos/swe-lite-raid/repos/venvs/scikit-learn_scikit-learn_7813f7efb5b2012412888b69e73d76f2df2b50b6/.venv/bin/python -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/home/ari/repos/swe-lite-raid/repos/venvs/scikit-learn_scikit-learn_7813f7efb5b2012412888b69e73d76f2df2b50b6/setup.py'"'"'; __file__='"'"'/home/ari/repos/swe-lite-raid/repos/venvs/scikit-learn_scikit-learn_7813f7efb5b2012412888b69e73d76f2df2b50b6/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' develop --no-deps Check the logs for full command output.
ERROR:root:Legacy venv setup failed with exit code 1
Command: (1, ['/home/ari/repos/swe-lite-raid/repos/venvs/scikit-learn_scikit-learn_7813f7efb5b2012412888b69e73d76f2df2b50b6/.venv/bin/pip', 'install', '-e', '.'])
Stdout: None
Stderr: None
ERROR:root:Failed to ensure base repo exists at /home/ari/repos/swe-lite-raid/repos/scikit-learn__scikit-learn: Legacy venv setup failed with exit code 1
Command: (1, ['/home/ari/repos/swe-lite-raid/repos/venvs/scikit-learn_scikit-learn_7813f7efb5b2012412888b69e73d76f2df2b50b6/.venv/bin/pip', 'install', '-e', '.'])
Stdout: None
Stderr: None
ERROR:root:Failed to setup repository at /home/ari/repos/swe-lite-raid/repos/scikit-learn__scikit-learn:
Error type: RuntimeError
Details: Legacy venv setup failed with exit code 1
Command: (1, ['/home/ari/repos/swe-lite-raid/repos/venvs/scikit-learn_scikit-learn_7813f7efb5b2012412888b69e73d76f2df2b50b6/.venv/bin/pip', 'install', '-e', '.'])
Stdout: None
Stderr: None
Error processing scikit-learn__scikit-learn-13439: Repository setup failed: Error type: RuntimeError
Details: Legacy venv setup failed with exit code 1
Command: (1, ['/home/ari/repos/swe-lite-raid/repos/venvs/scikit-learn_scikit-learn_7813f7efb5b2012412888b69e73d76f2df2b50b6/.venv/bin/pip', 'install', '-e', '.'])
Stdout: None
Stderr: None
ERROR:swe_lite_ra_aid:Error processing scikit-learn__scikit-learn-13439: Repository setup failed: Error type: RuntimeError
Details: Legacy venv setup failed with exit code 1
Command: (1, ['/home/ari/repos/swe-lite-raid/repos/venvs/scikit-learn_scikit-learn_7813f7efb5b2012412888b69e73d76f2df2b50b6/.venv/bin/pip', 'install', '-e', '.'])
Stdout: None
Stderr: None
Writing to /home/ari/repos/swe-lite-raid/predictions/ra_aid_predictions/scikit-learn__scikit-learn-13439-attempt1-20250115-164443.json with content length: 820
INFO:swe_lite_ra_aid:Writing to /home/ari/repos/swe-lite-raid/predictions/ra_aid_predictions/scikit-learn__scikit-learn-13439-attempt1-20250115-164443.json with content length: 820
Successfully wrote to /home/ari/repos/swe-lite-raid/predictions/ra_aid_predictions/scikit-learn__scikit-learn-13439-attempt1-20250115-164443.json
INFO:swe_lite_ra_aid:Successfully wrote to /home/ari/repos/swe-lite-raid/predictions/ra_aid_predictions/scikit-learn__scikit-learn-13439-attempt1-20250115-164443.json
No successful attempts with edited files
WARNING:swe_lite_ra_aid:No successful attempts with edited files