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Reproduce all ipynb files of Dynamo 1 #10

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Starlitnightly opened this issue Oct 17, 2024 · 0 comments
Open
12 of 13 tasks

Reproduce all ipynb files of Dynamo 1 #10

Starlitnightly opened this issue Oct 17, 2024 · 0 comments

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@Starlitnightly
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Starlitnightly commented Oct 17, 2024 •
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Conventional scRNA-seq

  • notebooks/zebrafish
  • notebooks/zebrafish_topography_analysis_tutorial

Differential geometry

  • notebooks/tutorial_hsc_dynamo_megakaryocytes_appearance
  • notebooks/tutorial_hsc_dynamo_cellwise_analysis
  • notebooks/tutorial_hsc_dynamo_basophil_lineage
  • notebooks/Differential_geometry

Labeling scRNA-seq

  • notebooks/scNT_seq_readthedocs
  • notebooks/tutorial_hsc_velocity
  • notebooks/scEU_seq_organoid_analysis_kinetic
  • notebooks/scEU_seq_rpe1_analysis_kinetic

Preprocessing

  • notebooks/tutorial_preprocess

Vector field predictions

  • notebooks/lap_tutorial
  • notebooks/perturbation_tutorial
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