diff --git a/docs/content/tools/shuffle.rst b/docs/content/tools/shuffle.rst index f94daec7..d9391b81 100755 --- a/docs/content/tools/shuffle.rst +++ b/docs/content/tools/shuffle.rst @@ -217,7 +217,7 @@ By default, ``shuffle`` requires that an interval's original length must be fully-contained within the chromosome. Yet there are cases where you might want to allow shuffled intervals to be relocated to a position in which the entire original interval cannot fit w/o exceeding -the end of the chromosome. By using the ``-noOverlapping`` option, +the end of the chromosome. By using the ``-allowBeyondChromEnd`` option, ``shuffle`` will allow intervals to be shuffled to locations that are so close to the chromosome end that the full length of the original record cannot be contained within the chromosome length. In such cases, the end coordinate