Test your production ready Nextflow pipelines in an efficient and automated way. 🚀
-Getting Started Installation Source
+Getting Started Installation Source
A DSL language similar to Nextflow
Describes expected behavior using 'when' and 'then' blocks
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nf-test enables you to test all components of your data science pipeline: from end-to-end testing of the entire pipeline to specific tests of processes or even custom functions. This ensures that all testing is conducted consistently across your project.
-nextflow_pipeline {
diff --git a/installation/index.html b/installation/index.html
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GitHub
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GitHub
diff --git a/resources/index.html b/resources/index.html
index b74d9755..f8854d3c 100644
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GitHub
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GitHub
@@ -1372,44 +1372,44 @@ Reproducibility is an important attribute of all good science. This is specially true in the realm of bioinformatics, where software is hopefully being constantly updated, and pipelines are ideally being maintained. This blog post covers nf-test in the nf-core context.
- nf-core/bytesize: Making pipeline level tests with nf-test
+ nf-core/bytesize: Making pipeline level tests with nf-test
In this nf-core bytesize session, Maxime Garcia shows how to make pipeline level tests with nf-test. If you like snapshots, CI/CD, and testing, this is for you!
The presentation was recored as part of the nf-core/nft-utils series.
- nf-core/bytesize: nft-bam
+ nf-core/bytesize: nft-bam
Nicolas Vannieuwkerke presents nft-bam a nf-test plugin to get stable nf-test snapshots for SAM, BAM or CRAM files.
The presentation was recored as part of the nf-core/nft-bam series.
- nf-core/bytesize: Converting pytest modules to nf-test
+ nf-core/bytesize: Converting pytest modules to nf-test
Adam Talbot & Sateesh Peri do a live demo of converting nf-core DSL2 modules pytests to nf-test
The presentation was recored as part of the nf-core/bytesize series.
- nf-test: a simple but powerful testing framework for Nextflow pipelines
+ nf-test: a simple but powerful testing framework for Nextflow pipelines
Lukas Forer provides an overview of nf-test, its evolution over time and up-coming features.
The presentation was recorded as part of the 2023 Nextflow Summit in Barcelona.
- nf-test, a simple test framework specifically tailored for Nextflow pipelines
+ nf-test, a simple test framework specifically tailored for Nextflow pipelines
Sateesh Peri does a hands-on exploration of nf-test, a simple test framework specifically tailored for Nextflow pipelines.
Slides to follow along can be found here.
The presentation was recorded as part of the Workflows Community Meetup - All Things Groovy at the Wellcome Genome Campus.
- nf-core/bytesize: nf-test
+ nf-core/bytesize: nf-test
Edmund Miller shares with us his impressions about nf-test from a user perspective. nf-test is a simple test framework for Nextflow pipelines.
The presentation was recored as part of the nf-core/bytesize
- Episode 8: nf-test, mentorships and debugging resume
+ Episode 8: nf-test, mentorships and debugging resume
Phil Ewels, Chris Hakkaart and Marcel Ribeiro-Dantas chat about the nf-test framework for testing Nextflow pipelines.
diff --git a/sitemap.xml.gz b/sitemap.xml.gz
index 549c605eeec88b47bc56a6013c01f1d10e45ae47..482a3ee64cb094aa4c1ed664bae75644f542fbff 100644
GIT binary patch
delta 13
Ucmb=gXP58h;9&6bo5)@P02nm`XaE2J
delta 13
Ucmb=gXP58h;Ar5}n8;oM02y%uh5!Hn
diff --git a/tutorials/github-actions/index.html b/tutorials/github-actions/index.html
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