avantonder/bacQC: Changelog

The format is based on Keep a Changelog and this project adheres to Semantic Versioning.

v2.0.0 - [05/11/24]

Significant recoding of pipeline to bring it more in line with current nf-core template.
Add Krona to produce graphical outputs of Bracken results. Path to Krona Taxonomy file will have to be specified with --kronadb.
Update FastQC from version 0.11.9 to version 0.12.1.
Update fastp from version 0.23.2 to version 0.23.4.
Update Kraken 2 from version 2.1.2 to version 2.1.3.
Update Bracken from version 2.7 to version 2.9.
Update MultiQC from version 1.13 to version 1.25.1. Report now includes Bracken outputs and Kraken 2 outputs.

v1.2 - [30/01/24]

Remove --brackendb parameter as redundant. Bracken will now use the database location specified with --krakendb.
Documentation updated.

v1.1 - [16/03/23]

Fix check_samplesheet.py bug
Various other fixes

v1.0 - [15/11/22]

Initial release of avantonder/bacQC, created with the nf-core template.