vcf2adam support

[skprasadu]

Team,

I am trying the exercise from @ https://aws.amazon.com/blogs/big-data/interactive-analysis-of-genomic-datasets-using-amazon-athena/ and when I am trying to convert from vcf2adam to convert to Parquet format. It is exiting telling vcf2adam is not supported only fasta2adam is supported. Can someone help?

I have already posted an issue in 1731
Krishna

[rstrahan]

The latest ADAM commits (since release 0,22) have deprecated 'vcf2adam' in favor of 'transformVariants'. It works the same way - see:
adam-submit transformVariants -help