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Intro to High Performance Computing for Life Sciences


University of Texas at Austin

May 18th, 2015, 1:00pm - 4:00pm

This class provides beginners and intermediate users with information on using resources at the Texas Advanced Computing Center and hands-on experience managing computational workflows using a Linux command line environment. The interactive lecture will emphasize common strategies used for interacting with clusters and high performance computing resources.

Participants must bring a laptop for the hands-on exercises. Instructions on creating a TACC account and installing required software will be distributed before the class to all registered participants.

Instructor: John Fonner

##Agenda

Time Topic
1:00 - 1:20 Overview of TACC and the user portal
1:20 - 1:40 Shell basics
1:40 - 2:00 File movement and management
2:00 - 2:20 Piping commands and looping
2:20 - 2:40 Coffee break
2:40 - 3:00 Life sciences software and modules
3:00 - 3:20 Job submission and management
3:20 - 3:40 Customizing environment settings
3:40 - 4:00 Catch-up time and questions