-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathserver.R
1608 lines (1582 loc) · 486 KB
/
server.R
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
library(shiny)
library(shinydashboard)
library(DT)
Patient_005=as.data.frame(read.table(text = " Driver SNV_Tumour_005 SNV_Organoid_005 INDEL_Tumour_005 INDEL_Organoid_005 Deletion_Organoid_005
ABCB1 * * * - - -
ACVR1B * * - - - -
ACVR2A * - - - - -
APC * * - - - -
ARID1A * * - - - -
ARID1B * * * - - -
ARID2 * * - - - -
AXIN1 * - * - - -
B2M * - - - - -
BRAF * * * * - -
C3orf62 * - - - - -
CCDC102B * * * * * -
CCND1 * * - - - -
CCND3 * - - - - -
CCNE1 * * - - - -
CD1A * - - - - -
CDH1 * - - - - -
CDK6 * - * - - -
CDKN1B * - - - - -
CDKN2A * - - * - *
CHD4 * * - - - -
CHL1 * * * - - -
COIL * - - - - -
CRISPLD1 * - - - - -
CTNNB1 * - * - - -
DNAH7 * * - - * -
EGFR * * * - - -
ELF3 * - - - - -
EPHA2 * - - - - -
EPHA3 * * * * - -
ERBB2 * - - - - -
FAM196B * - - - - -
FBXW7 * * * * - -
GATA4 * - - - - -
GATA6 * * - - - -
GATAD1 * - - - - -
GPATCH8 * - - - - -
HIST1H3B * - - - - -
JAK1 * - - - - -
KCNQ3 * * * - * -
KDM6A * - - * - -
KRAS * * - - - -
LIN7A * * - - - -
LRRK2 * - * - - -
MAP2K7 * - - - - -
MAP3K1 * - - - - -
MBD6 * - - - - -
MDM2 * - - - - -
MET * * - - - -
MSH3 * * - * - -
MUC6 * - - - * -
MYC * * - - - -
NAV3 * * * - * -
NIPBL * * - - * -
NOTCH1 * * - - - -
PBRM1 * - - * - -
PCDH17 * * * - - -
PIK3CA * - - - - -
PIK3R1 * * - - - -
POLQ * - - - - -
PPM1D * * - - - -
PTEN * * - - - -
RASA1 * * - - * -
RNF43 * - - - - -
RPL22 * - - - - -
SCN3A * * * - - -
SIN3A * - - - - -
SLIT2 * * * - * -
SMAD4 * * * * - -
SMARCA4 * * - - - -
STK11 * - * - - -
TGFBR2 * * - - - -
TP53 * - * - - -
TRPA1 * - - - - -
TSHZ3 * * - * - -
ZFHX3 * * * * * -
"))
annotated_snv_indel5=as.data.frame(read.table(text = " Sample SYMBOL Location Allele Consequence IMPACT Gene Feature_type Feature BIOTYPE EXON INTRON HGVSc HGVSp cDNA_position CDS_position Protein_position Amino_acids Codons Existing_variation DISTANCE STRAND FLAGS SYMBOL_SOURCE HGNC_ID TSL APPRIS SIFT PolyPhen AF FREQS CLIN_SIG SOMATIC PHENO PUBMED MOTIF_NAME MOTIF_POS HIGH_INF_POS MOTIF_SCORE_CHANGE
Organoid_005 PRDM16 1:3084364-3084365 - intron_variant MODIFIER ENSG00000142611 Transcript ENST00000270722 protein_coding - 16-Jan - - - - - - - - - 1 - HGNC HGNC:14000 1 P3 - - - - - - - - - - - -
Organoid_005 PRDM16 1:3084364-3084365 - intron_variant MODIFIER ENSG00000142611 Transcript ENST00000378391 protein_coding - 16-Jan - - - - - - - - - 1 - HGNC HGNC:14000 1 A2 - - - - - - - - - - - -
Organoid_005 PRDM16 1:3084364-3084365 - intron_variant MODIFIER ENSG00000142611 Transcript ENST00000511072 protein_coding - 15-Jan - - - - - - - - - 1 - HGNC HGNC:14000 5 A2 - - - - - - - - - - - -
Organoid_005 PRDM16 1:3084364-3084365 - intron_variant MODIFIER ENSG00000142611 Transcript ENST00000514189 protein_coding - 15-Jan - - - - - - - - - 1 - HGNC HGNC:14000 5 A2 - - - - - - - - - - - -
Organoid_005 PRDM16 1:3084364-3084365 - intron_variant,non_coding_transcript_variant MODIFIER ENSG00000142611 Transcript ENST00000607632 retained_intron - 1-Jan - - - - - - - - - 1 - HGNC HGNC:14000 2 - - - - - - - - - - - - -
Organoid_005 AL355602.1 1:4486968-4486969 - upstream_gene_variant MODIFIER ENSG00000284694 Transcript ENST00000641472 lincRNA - - - - - - - - - - 2594 -1 - Clone_based_ensembl_gene - - - - - - - - - - - - - - -
Organoid_005 AL365255.1 1:5621157-5621157 A intron_variant,non_coding_transcript_variant MODIFIER ENSG00000236948 Transcript ENST00000413887 lincRNA - 1-Jan - - - - - - - - - -1 - Clone_based_ensembl_gene - 5 - - - - - - - - - - - - -
"))
structural_variants5 = as.data.frame(read.delim(text = " Sample ID Type Chrom1 Start1 End1 Strand1 Chrom2 Start2 End2 Strand2 Score Filters Read.pairs...tumour Read.pairs...normal Split.reads...tumour Split.reads...normal MobileElement.node1 MobileElement.node2 FragileSite.node1 FragileSite.node2 endRetained.node1 GeneName.node1 endRetained.node2 GeneName.node2 FusionPrediction.node1 Details.node1 Runthrough.node1 TranscriptsRetained.node1 FusionPrediction.node2 Details.node2 Runthrough.node2 TranscriptsRetained.node2 Num.genes.deleted Genes.deleted EnsemblGeneID.node1 gene.chr.node1 gene.start.node1 gene.end.node1 GeneStrand.node1 EnsemblGeneID.node2 gene.chr.node2 gene.start.node2 gene.end.node2 GeneStrand.node2 Runthrough.node1.chr Runthrough.node1.start Runthrough.node1.end
Tumour_005 MantaBND:860:0:1:0:0:0:1_MantaBND:860:0:1:0:0:0:0 BND chr1 11982292 11982294 + chr5 94517801 94517803 + 34 PASS 2 0 2 0 - - - - 3' KIAA2013 3' MCTP1 - - - - - - - - 0 - ENSG00000116685 chr1 11979648 11986485 -1 ENSG00000175471 chr5 94039446 94620279 -1 - - -
Tumour_005 MantaBND:28611:0:1:0:0:0:0_MantaBND:28611:0:1:0:0:0:1 BND chr2 228195173 228195175 + chr12 53298839 53298841 + 83 PASS 9 0 12 0 - - - - 5' MFF 3' KRT8 FUSION+ 5' of MFF into 3' of KRT8 - - FUSION+ 5' of MFF into 3' of KRT8 - - 0 - ENSG00000168958 chr2 228189867 228222550 1 ENSG00000170421 chr12 53290977 53343738 -1 - - -
Tumour_005 MantaBND:36142:0:1:0:0:0:1_MantaBND:36142:0:1:0:0:0:0 BND chr3 114061508 114061509 + chr7 129112990 129112991 + 34 PASS 2 0 2 0 - - - - 3' ZBTB20 5' STRIP2 FUSION- 5' of STRIP2 into 3' of ZBTB20 - - FUSION- 5' of STRIP2 into 3' of ZBTB20 - 1 0 - ENSG00000181722 chr3 114056941 114866118 -1 ENSG00000128578 chr7 129074274 129128240 1 - - -
Tumour_005 MantaBND:52494:0:1:0:0:0:1_MantaBND:52494:0:1:0:0:0:0 BND chr4 188869446 188869450 + chr4 188894035 188894039 + 72 PASS 8 0 7 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_005 MantaBND:64687:0:1:0:0:0:0_MantaBND:64687:0:1:0:0:0:1 BND chr6 17480237 17480718 - chr8 106205145 106205693 - 56 PASS 9 0 0 0 - - - - 3' CAP2 3' RP11-127H5.1 - - - - - - - - 0 - ENSG00000112186 chr6 17393447 17558023 1 ENSG00000253350 chr8 105602961 106431488 1 - - -
Tumour_005 MantaBND:78527:0:1:0:1:0:1_MantaBND:78527:0:1:0:1:0:0 BND chr7 68439792 68439793 + chr19 6192766 6192767 - 51 PASS 4 0 7 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_005 MantaBND:96625:0:1:0:0:0:0_MantaBND:96625:0:1:0:0:0:1 BND chr13 49747105 49747107 - chr15 101716111 101716113 + 71 PASS 9 0 11 0 - - - - 3' FNDC3A 3' CHSY1 - - - - - - - - 0 - ENSG00000102531 chr13 49550048 49783915 1 ENSG00000131873 chr15 101715928 101792137 -1 - - -
Tumour_005 MantaBND:126343:0:1:0:0:0:1_MantaBND:126343:0:1:0:0:0:0 BND chr13 50064196 50064809 + chr13 50065000 50065704 + 44 PASS 8 0 0 0 - - - - 5' SETDB2 5' SETDB2 INTERNL PROB INV OR TDUP - 2 INTERNL PROB INV OR TDUP - 2 0 - ENSG00000136169 chr13 50018429 50069138 1 ENSG00000136169 chr13 50018429 50069138 1 - - -
Tumour_005 MantaBND:140138:0:1:0:0:0:1_MantaBND:140138:0:1:0:0:0:0 BND chr15 101626523 101626527 - chr15 101634017 101634021 - 49 PASS 8 0 2 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_005 MantaBND:147135:0:1:0:2:0:1_MantaBND:147135:0:1:0:2:0:0 BND chr17 26248947 26248950 + chr17 26250507 26250510 + 57 PASS 8 0 7 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_005 MantaBND:147300:0:1:0:0:0:1_MantaBND:147300:0:1:0:0:0:0 BND chr17 29309968 29309970 - chr17 35554806 35554808 - 78 PASS 11 0 7 0 - - - - 3' RNF135 5' ACACA FUSION- 5' of ACACA into 3' of RNF135 - - FUSION- 5' of ACACA into 3' of RNF135 - 15 0 - ENSG00000181481 chr17 29295803 29326929 1 ENSG00000132142 chr17 35441923 35766909 -1 - - -
Tumour_005 MantaBND:148341:0:1:0:2:0:0_MantaBND:148341:0:1:0:2:0:1 BND chr17 46688698 46688699 - chr19 21148105 21148106 + 45 PASS 2 0 8 0 - - - - 5' HOXB7 - - - - - - - - - - 0 - ENSG00000260027 chr17 46684594 46710934 -1 - NA - - - - - -
Tumour_005 MantaBND:163606:0:1:0:0:0:0_MantaBND:163606:0:1:0:0:0:1 BND chr21 19431227 19431228 - chrY 13479014 13479015 + 103 PASS 17 0 7 0 - - - - 3' CHODL - - - - - - - - - - 0 - ENSG00000154645 chr21 19273580 19639690 1 - NA - - - - - -
Tumour_005 MantaBND:163606:0:1:0:0:0:0_MantaBND:163606:0:1:0:0:0:1 BND chr21 19431227 19431228 - chrY 13479014 13479015 + 103 PASS 17 0 7 0 - - - - 5' AP000998.2 - - - - - - - - - - 0 - ENSG00000227330 chr21 19394687 19487222 -1 - NA - - - - - -
Tumour_005 MantaBND:172400:0:1:0:0:0:0_MantaBND:172400:0:1:0:0:0:1 BND chrY 3210952 3210955 - chrY 3212846 3212849 - 60 PASS 7 0 13 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_005 MantaBND:172421:0:1:0:0:0:0_MantaBND:172421:0:1:0:0:0:1 BND chrY 6098860 6098861 + chrY 14773605 14773606 + 51 PASS 3 0 6 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_005 MantaDEL:2:37970:37970:1:0:0 DEL chrY 13477158 13477163 + chrY 13477241 13477242 - 40 PASS 0 0 16 0 - - - - - - 3' DUX4L18 - - - - - - - - 0 - - NA - - - ENSG00000259029 chrY 13477233 13478499 1 - - -
Tumour_005 MantaDEL:2159:0:1:0:0:0 DEL chr1 28677074 28677079 + chr1 28706324 28706329 - 66 PASS 8 0 7 0 - - - - - - 3' PHACTR4 - - - - - - - - 0 - - NA - - - ENSG00000204138 chr1 28696114 28826881 1 - - -
Tumour_005 MantaDEL:14426:0:1:0:0:0 DEL chr1 245902589 245902590 + chr1 246007384 246007385 - 155 PASS 24 0 12 0 - - - - - - 5' SMYD3 - - - - - - - 8 0 - - NA - - - ENSG00000185420 chr1 245912642 246670614 -1 - - -
Tumour_005 MantaDEL:18444:0:1:0:0:0 DEL chr2 56345643 56345645 + chr2 56345829 56345830 - 66 PASS 9 0 11 0 - - - - 5' RP11-481J13.1 3' RP11-481J13.1 INTERNL 0 EXONS DELETED - - INTERNL 0 EXONS DELETED - - 0 - ENSG00000272180 chr2 56179293 56408787 1 ENSG00000272180 chr2 56179293 56408787 1 - - -
Tumour_005 MantaDEL:33181:0:1:0:0:0 DEL chr3 59766214 59766217 + chr3 59785325 59785328 - 163 PASS 21 0 14 0 - - FHIT FHIT - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_005 MantaDEL:33209:0:1:0:0:0 DEL chr3 60270545 60270548 + chr3 60705591 60705594 - 130 PASS 14 0 12 0 - - FHIT FHIT - - - - - - - - - - - - 2 RP11-641C17.4,RP11-641C17.2 - NA - - - - NA - - - - - -
Tumour_005 MantaDEL:34314:0:1:0:0:0 DEL chr3 77973091 77973093 + chr3 77991398 77991400 - 78 PASS 8 0 6 0 - - ROBO1 ROBO1 - - - - - - - - - - - - 1 AC134729.1 - NA - - - - NA - - - - - -
Tumour_005 MantaDEL:35180:0:1:0:0:0 DEL chr3 95972796 95972800 + chr3 95974511 95974515 - 120 PASS 18 0 10 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_005 MantaDEL:39684:0:1:0:0:0 DEL chr3 174839609 174839611 + chr3 174865243 174865245 - 56 PASS 5 0 4 0 - - NAALADL2 NAALADL2 5' NAALADL2 3' NAALADL2 INTERNL 1 EXONS DELETED - 7 INTERNL 1 EXONS DELETED - - 0 - ENSG00000177694 chr3 174156363 175523428 1 ENSG00000177694 chr3 174156363 175523428 1 - - -
Tumour_005 MantaDEL:44889:0:1:0:0:0 DEL chr4 57661423 57662069 + chr4 57664929 57665518 - 58 PASS 12 0 0 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_005 MantaDEL:53353:0:1:0:0:0 DEL chr5 660352 660354 + chr5 683268 683270 - 49 PASS 2 0 3 0 - - - - 5' CEP72 5' TPPP - - - 4 - - - - 1 AC026740.1 ENSG00000112877 chr5 612387 667283 1 ENSG00000171368 chr5 660883 693510 -1 - - -
Tumour_005 MantaDEL:56265:0:1:0:0:0 DEL chr7 40053310 40053314 + chr7 40084822 40084826 - 112 PASS 18 0 12 0 - - - - 5' CDK13 3' CDK13 INTERNL 0 EXONS DELETED - - INTERNL 0 EXONS DELETED - - 0 - ENSG00000065883 chr7 39989636 40136733 1 ENSG00000065883 chr7 39989636 40136733 1 - - -
Tumour_005 MantaDEL:56421:0:1:0:0:0 DEL chr5 50758855 50758859 + chr5 50762769 50762773 - 76 PASS 10 0 6 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_005 MantaDEL:65966:0:1:0:0:0 DEL chr6 32280118 32280685 + chr6 32286747 32287062 - 36 PASS 6 0 0 0 - - None None 3' C6orf10 5' C6orf10 INTERNL 2 EXONS DELETED - - INTERNL 2 EXONS DELETED - 2 0 - ENSG00000204296 chr6 32256303 32339684 -1 ENSG00000204296 chr6 32256303 32339684 -1 - - -
Tumour_005 MantaDEL:70339:0:1:0:0:0 DEL chr6 109713614 109713617 + chr6 109836932 109836935 - 66 PASS 8 0 3 0 - - - - 3' PPIL6 5' AK9 FUSION- 5' of AK9 into 3' of PPIL6 - - FUSION- 5' of AK9 into 3' of PPIL6 - 10 6 AL109947.1,RP5-919F19.5,AL109947.2,SMPD2,MICAL1,ZBTB24 ENSG00000185250 chr6 109711418 109762374 -1 ENSG00000155085 chr6 109814059 110012420 -1 - - -
Tumour_005 MantaDEL:74876:0:1:0:0:0 DEL chr7 15238738 15238739 + chr7 15240020 15240021 - 36 PASS 5 0 3 0 - - - - - - 5' AGMO - - - - - - - 3 0 - - NA - - - ENSG00000187546 chr7 15239943 15601640 -1 - - -
Tumour_005 MantaDEL:75054:0:1:0:0:0 DEL chr7 17435336 17435337 + chr7 17436107 17436108 - 48 PASS 7 0 4 0 - - - - 5' AC019117.1 3' AC019117.1 INTERNL 0 EXONS DELETED - - INTERNL 0 EXONS DELETED - - 0 - ENSG00000236318 chr7 17414491 17506288 1 ENSG00000236318 chr7 17414491 17506288 1 - - -
Tumour_005 MantaDEL:81291:0:1:0:0:0 DEL chr7 110655078 110655081 + chr7 110670526 110670529 - 103 PASS 12 0 7 0 - - IMMP2L IMMP2L 3' IMMP2L 5' IMMP2L INTERNL 0 EXONS DELETED - - INTERNL 0 EXONS DELETED - 2 0 - ENSG00000184903 chr7 110303110 111202573 -1 ENSG00000184903 chr7 110303110 111202573 -1 - - -
Tumour_005 MantaDEL:81312:0:1:0:0:0 DEL chr7 110577881 110577884 + chr7 110751135 110751138 - 106 PASS 18 0 12 0 - - IMMP2L IMMP2L 3' IMMP2L 5' IMMP2L INTERNL 3 EXONS DELETED - - INTERNL 3 EXONS DELETED - 2 1 snoU13 ENSG00000184903 chr7 110303110 111202573 -1 ENSG00000184903 chr7 110303110 111202573 -1 - - -
Tumour_005 MantaDEL:81312:0:1:0:0:0 DEL chr7 110577881 110577884 + chr7 110751135 110751138 - 106 PASS 18 0 12 0 - - IMMP2L IMMP2L 3' IMMP2L 3' LRRN3 - - - - - - - - 1 snoU13 ENSG00000184903 chr7 110303110 111202573 -1 ENSG00000173114 chr7 110731062 110765510 1 - - -
Tumour_005 MantaDEL:82743:0:1:0:0:0 DEL chr7 133622451 133622452 + chr7 133627755 133627756 - 111 PASS 19 0 13 0 - - EXOC4 EXOC4 - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_005 MantaDEL:84338:0:1:0:1:0 DEL chr7 156962616 156962622 + chr7 157108331 157108337 - 108 PASS 19 0 13 0 - - - - 5' UBE3C - - - - - - - - - - 5 RP4-814D15.2,RP4-814D15.1,RP5-1142J19.2,RP5-1142J19.1,RN7SL142P ENSG00000009335 chr7 156931607 157062066 1 - NA - - - - - -
Tumour_005 MantaDEL:84818:0:1:0:0:0 DEL chr8 2548843 2548847 + chr8 2568746 2568750 - 96 PASS 8 0 8 0 - - - - 3' RP11-134O21.1 5' RP11-134O21.1 INTERNL 3 EXONS DELETED - - INTERNL 3 EXONS DELETED - - 0 - ENSG00000254319 chr8 2523591 2585991 -1 ENSG00000254319 chr8 2523591 2585991 -1 - - -
Tumour_005 MantaDEL:87549:0:1:0:0:0 DEL chr8 48390229 48390232 + chr8 48446557 48446560 - 54 PASS 4 0 4 0 - - - - 5' SPIDR 3' SPIDR INTERNL 0 EXONS DELETED - 7 INTERNL 0 EXONS DELETED - - 2 RP11-697N18.3,RP11-697N18.4 ENSG00000164808 chr8 48173167 48648868 1 ENSG00000164808 chr8 48173167 48648868 1 - - -
Tumour_005 MantaDEL:94870:0:1:0:0:0 DEL chr9 36806631 36806635 + chr9 36809865 36809869 - 47 PASS 5 0 3 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_005 MantaDEL:104190:0:1:0:0:0 DEL chr10 68114715 68114718 + chr10 68332149 68332152 - 120 PASS 16 0 6 0 - - - - 3' CTNNA3 5' CTNNA3 INTERNL 2 EXONS DELETED - - INTERNL 2 EXONS DELETED - 3 1 snoR442 ENSG00000183230 chr10 67672276 69455927 -1 ENSG00000183230 chr10 67672276 69455927 -1 - - -
Tumour_005 MantaDEL:132292:0:1:0:0:0 DEL chr14 49545888 49545893 + chr14 49545952 49545953 - 40 PASS 0 0 5 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_005 MantaDEL:133642:0:1:0:0:0 DEL chr14 76468177 76468179 + chr14 76469944 76469946 - 82 PASS 13 0 8 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_005 MantaDEL:144586:0:1:0:0:0 DEL chr16 78676488 78676489 + chr16 78920642 78920643 - 58 PASS 3 0 5 0 - - WWOX WWOX 5' WWOX 3' WWOX INTERNL 3 EXONS DELETED - 9 INTERNL 3 EXONS DELETED - - 1 RPS3P7 ENSG00000186153 chr16 78133310 79246564 1 ENSG00000186153 chr16 78133310 79246564 1 - - -
Tumour_005 MantaDEL:144588:0:1:0:0:0 DEL chr16 78492281 78492284 + chr16 78649635 78649638 - 91 PASS 8 0 8 0 - - WWOX WWOX 5' WWOX 3' WWOX INTERNL 0 EXONS DELETED - 9 INTERNL 0 EXONS DELETED - - 2 RP11-264L1.4,RP11-264L1.3 ENSG00000186153 chr16 78133310 79246564 1 ENSG00000186153 chr16 78133310 79246564 1 - - -
Tumour_005 MantaDEL:144592:0:1:0:1:0 DEL chr16 78577557 78577558 + chr16 78789041 78789042 - 115 PASS 15 0 8 0 - - WWOX WWOX 5' WWOX 3' WWOX INTERNL 1 EXONS DELETED - 9 INTERNL 1 EXONS DELETED - - 0 - ENSG00000186153 chr16 78133310 79246564 1 ENSG00000186153 chr16 78133310 79246564 1 - - -
Tumour_005 MantaDEL:144593:0:1:0:0:0 DEL chr16 78545603 78545607 + chr16 78571937 78571941 - 128 PASS 15 0 12 0 - - WWOX WWOX 5' WWOX 3' WWOX INTERNL 0 EXONS DELETED - 9 INTERNL 0 EXONS DELETED - - 1 RP11-264L1.3 ENSG00000186153 chr16 78133310 79246564 1 ENSG00000186153 chr16 78133310 79246564 1 - - -
Tumour_005 MantaDEL:157644:0:1:0:0:0 DEL chr19 37130854 37130858 + chr19 37135305 37135309 - 61 PASS 9 0 5 0 - - - - 3' ZNF461 5' ZNF461 INTERNL 10 EXONS DELETED - - INTERNL 10 EXONS DELETED - 3 0 - ENSG00000197808 chr19 37128094 37157755 -1 ENSG00000197808 chr19 37128094 37157755 -1 - - -
Tumour_005 MantaDEL:160229:0:1:0:0:0 DEL chr20 14677597 14677598 + chr20 14833113 14833114 - 122 PASS 11 0 15 0 - - MACROD2 MACROD2 5' MACROD2 3' MACROD2 INTERNL 2 EXONS DELETED - 6 INTERNL 2 EXONS DELETED - - 1 RPS10P2 ENSG00000172264 chr20 13976015 16033842 1 ENSG00000172264 chr20 13976015 16033842 1 - - -
Tumour_005 MantaDEL:160239:0:1:0:0:0 DEL chr20 15000369 15000370 + chr20 15049400 15049401 - 56 PASS 6 0 4 0 - - MACROD2 MACROD2 5' MACROD2 3' MACROD2 INTERNL 0 EXONS DELETED - 9 INTERNL 0 EXONS DELETED - - 2 RNU6-1159P,RNU6-115P ENSG00000172264 chr20 13976015 16033842 1 ENSG00000172264 chr20 13976015 16033842 1 - - -
Tumour_005 MantaDEL:169236:0:1:0:0:0 DEL chrX 31740286 31740289 + chrX 31979875 31979878 - 116 PASS 16 0 10 0 - - - - 3' DMD 5' DMD INTERNL 10 EXONS DELETED - - INTERNL 10 EXONS DELETED - 9 0 - ENSG00000198947 chrX 31115794 33357558 -1 ENSG00000198947 chrX 31115794 33357558 -1 - - -
Tumour_005 MantaDEL:169709:0:1:0:0:0 DEL chrX 51697403 51697407 + chrX 51697492 51697493 - 41 PASS 0 0 7 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_005 MantaDEL:170704:0:1:0:0:0 DEL chrX 96703180 96703183 + chrX 96825597 96825600 - 120 PASS 25 0 16 0 - - DIAPH2 DIAPH2 5' DIAPH2 5' DIAPH2-AS1 - - - - - - - 1 0 - ENSG00000147202 chrX 95939662 96859996 1 ENSG00000236256 chrX 96686285 96897588 -1 - - -
Tumour_005 MantaDEL:170704:0:1:0:0:0 DEL chrX 96703180 96703183 + chrX 96825597 96825600 - 120 PASS 25 0 16 0 - - DIAPH2 DIAPH2 5' DIAPH2 3' DIAPH2 INTERNL 2 EXONS DELETED - - INTERNL 2 EXONS DELETED - - 0 - ENSG00000147202 chrX 95939662 96859996 1 ENSG00000147202 chrX 95939662 96859996 1 - - -
Tumour_005 MantaDEL:170704:0:1:0:0:0 DEL chrX 96703180 96703183 + chrX 96825597 96825600 - 120 PASS 25 0 16 0 - - DIAPH2 DIAPH2 3' DIAPH2-AS1 5' DIAPH2-AS1 INTERNL 6 EXONS DELETED - - INTERNL 6 EXONS DELETED - 1 0 - ENSG00000236256 chrX 96686285 96897588 -1 ENSG00000236256 chrX 96686285 96897588 -1 - - -
Tumour_005 MantaDEL:170704:0:1:0:0:0 DEL chrX 96703180 96703183 + chrX 96825597 96825600 - 120 PASS 25 0 16 0 - - DIAPH2 DIAPH2 3' DIAPH2-AS1 3' DIAPH2 - - - - - - - - 0 - ENSG00000236256 chrX 96686285 96897588 -1 ENSG00000147202 chrX 95939662 96859996 1 - - -
Tumour_005 MantaDEL:172004:0:1:0:0:0 DEL chrX 142864012 142864017 + chrX 142886842 142886847 - 100 PASS 13 0 12 0 - - - - 5' RP3-526F5.2 3' RP3-526F5.2 INTERNL 0 EXONS DELETED - - INTERNL 0 EXONS DELETED - - 0 - ENSG00000225970 chrX 142840832 142911228 1 ENSG00000225970 chrX 142840832 142911228 1 - - -
Tumour_005 MantaDEL:172098:0:1:0:0:0 DEL chrX 145262807 145262810 + chrX 145280065 145280068 - 53 PASS 6 0 5 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_005 MantaDEL:172421:1:2:0:0:0 DEL chrY 14770220 14770221 + chrY 14773313 14773314 - 124 PASS 16 0 11 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_005 MantaDUP:TANDEM:33260:0:1:0:0:0 DUP chr3 60882109 60882112 - chr3 60934155 60934158 + 126 PASS 21 0 13 0 - - FHIT FHIT - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_005 MantaDUP:TANDEM:33263:0:1:0:1:0 DUP chr3 60744344 60744345 - chr3 60806306 60806307 + 109 PASS 15 0 10 0 - - FHIT FHIT - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_005 MantaDUP:TANDEM:47014:0:1:0:0:0 DUP chr4 90981467 90981469 - chr4 91034873 91034875 + 60 PASS 7 0 4 0 - - CCSER1 CCSER1 - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_005 MantaDUP:TANDEM:73990:0:1:0:0:0 DUP chr7 3872619 3872622 - chr7 3961457 3961460 + 53 PASS 8 0 7 0 - - SDK1 SDK1 3' SDK1 5' SDK1 INTERNL PROB INV OR TDUP - - INTERNL PROB INV OR TDUP - - 0 - ENSG00000146555 chr7 3341080 4308632 1 ENSG00000146555 chr7 3341080 4308632 1 - - -
Tumour_005 MantaDUP:TANDEM:108457:0:1:0:0:0 DUP chr11 2143181 2143184 - chr11 2253820 2253823 + 75 PASS 13 0 8 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_005 MantaDUP:TANDEM:108956:0:1:0:0:0 DUP chr11 8558301 8558306 - chr11 42778260 42778265 + 66 PASS 9 0 4 0 - - - - 5' STK33 - - - - - - - - - - 0 - ENSG00000130413 chr11 8413418 8615836 -1 - NA - - - - - -
Tumour_005 MantaDUP:TANDEM:125749:0:1:0:1:0 DUP chr13 40719105 40719106 - chr13 47474178 47474179 + 79 PASS 12 0 9 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_005 MantaDUP:TANDEM:126403:0:1:0:0:0 DUP chr13 50737193 50737196 - chr13 50759510 50759513 + 77 PASS 10 0 10 0 - - - - 3' DLEU1 5' DLEU1 INTERNL PROB INV OR TDUP - - INTERNL PROB INV OR TDUP - 3 0 - ENSG00000176124 chr13 50656307 51297372 1 ENSG00000176124 chr13 50656307 51297372 1 - - -
Tumour_005 MantaDUP:TANDEM:130478:1:2:0:0:0 DUP chr14 19019096 19019671 - chr14 19023461 19024248 + 57 PASS 12 0 0 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_005 MantaDUP:TANDEM:136613:0:1:0:0:0 DUP chr15 41286633 41286653 - chr15 41290291 41290311 + 50 PASS 9 0 4 0 - - - - 5' INO80 3' INO80 INTERNL PROB INV OR TDUP - 3 INTERNL PROB INV OR TDUP - - 0 - ENSG00000128908 chr15 41271078 41408552 -1 ENSG00000128908 chr15 41271078 41408552 -1 - - -
Tumour_005 MantaDUP:TANDEM:142784:0:1:0:0:0 DUP chr16 48626050 48626051 - chr16 48628838 48628839 + 58 PASS 8 0 7 0 - - - - 5' N4BP1 3' N4BP1 INTERNL PROB INV OR TDUP - - INTERNL PROB INV OR TDUP - - 0 - ENSG00000102921 chr16 48572637 48654059 -1 ENSG00000102921 chr16 48572637 48654059 -1 - - -
Tumour_005 MantaDUP:TANDEM:145320:0:1:0:0:0 DUP chr16 88591847 88591850 - chr16 88748407 88748410 + 72 PASS 10 0 7 0 - - - - 5' RP11-21B21.4 5' SNAI3-AS1 - - - - - - - 4 0 - ENSG00000261744 chr16 88579368 88597461 -1 ENSG00000260630 chr16 88729706 88753594 1 - - -
Tumour_005 MantaDUP:TANDEM:145320:0:1:0:0:0 DUP chr16 88591847 88591850 - chr16 88748407 88748410 + 72 PASS 10 0 7 0 - - - - 5' RP11-21B21.4 3' SNAI3 FUSION+ 5' of RP11-21B21.4 into 3' of SNAI3 - - FUSION+ 5' of RP11-21B21.4 into 3' of SNAI3 - - 0 - ENSG00000261744 chr16 88579368 88597461 -1 ENSG00000185669 chr16 88744090 88752901 -1 - - -
Tumour_005 MantaDUP:TANDEM:145320:0:1:0:0:0 DUP chr16 88591847 88591850 - chr16 88748407 88748410 + 72 PASS 10 0 7 0 - - - - 3' ZFPM1 5' SNAI3-AS1 FUSION- 5' of SNAI3-AS1 into 3' of ZFPM1 - - FUSION- 5' of SNAI3-AS1 into 3' of ZFPM1 - 4 0 - ENSG00000179588 chr16 88519725 88603424 1 ENSG00000260630 chr16 88729706 88753594 1 - - -
Tumour_005 MantaDUP:TANDEM:145320:0:1:0:0:0 DUP chr16 88591847 88591850 - chr16 88748407 88748410 + 72 PASS 10 0 7 0 - - - - 3' ZFPM1 3' SNAI3 - - - - - - - - 0 - ENSG00000179588 chr16 88519725 88603424 1 ENSG00000185669 chr16 88744090 88752901 -1 - - -
Tumour_005 MantaDUP:TANDEM:163785:0:1:0:0:0 DUP chr21 21864274 21864275 - chr21 22404543 22404544 + 130 PASS 20 0 14 0 - - - - - - 5' NCAM2 - - - - - - - - 0 - - NA - - - ENSG00000154654 chr21 22370633 22915650 1 - - -
Tumour_005 MantaDUP:TANDEM:166351:0:1:0:0:0 DUP chr22 28718271 28718273 - chr22 28723825 28723827 + 72 PASS 8 0 12 0 - - - - 5' TTC28 3' TTC28 INTERNL PROB INV OR TDUP - 1 INTERNL PROB INV OR TDUP - - 0 - ENSG00000100154 chr22 28374004 29075853 -1 ENSG00000100154 chr22 28374004 29075853 -1 - - -
Tumour_005 MantaINS:10474:0:0:0:0:0 INS chr1 186383731 186383738 + chr1 186383731 186383732 - 50 PASS 0 0 11 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_005 MantaBND:2405:0:1:0:0:0:0_MantaBND:2405:0:1:0:0:0:1 BND chr1 33037270 33037741 - chr1 92093979 92094455 - 75 PASS 16 0 0 0 - - - - 3' RP1-27O5.3 - - - - - - - - - - 0 - ENSG00000254553 chr1 32930658 33066393 1 - NA - - - - - -
Organoid_005 MantaBND:2405:0:1:0:0:0:0_MantaBND:2405:0:1:0:0:0:1 BND chr1 33037270 33037741 - chr1 92093979 92094455 - 75 PASS 16 0 0 0 - - - - 3' ZBTB8A - - - - - - - - - - 0 - ENSG00000160062 chr1 33005028 33071540 1 - NA - - - - - -
Organoid_005 MantaBND:22928:1:4:0:0:0:1_MantaBND:22928:1:4:0:0:0:0 BND chr4 106482328 106482868 + chrX 9759689 9760011 - 86 PASS 3 0 0 0 - - - NLGN4X 5' ARHGEF38-IT1 3' SHROOM2 FUSION+ 5' of ARHGEF38-IT1 into 3' of SHROOM2 - - FUSION+ 5' of ARHGEF38-IT1 into 3' of SHROOM2 - - 0 - ENSG00000249885 chr4 106482748 106491395 1 ENSG00000146950 chrX 9754496 9917483 1 - - -
Organoid_005 MantaBND:22928:1:4:1:0:0:1_MantaBND:22928:1:4:1:0:0:0 BND chr4 106482322 106482912 - chrX 9760174 9760488 + 86 PASS 13 0 0 0 - - - NLGN4X - - 5' SHROOM2 - - - - - - - - 0 - - NA - - - ENSG00000146950 chrX 9754496 9917483 1 - - -
Organoid_005 MantaBND:44748:0:0:1:0:0:0_MantaBND:44748:0:0:1:0:0:1 BND chr4 60486209 60487040 + chr4 60486403 60487040 + 62 PASS 12 0 0 0 - - - - 3' RP11-725D20.1 3' RP11-725D20.1 INTERNL PROB INV OR TDUP - - INTERNL PROB INV OR TDUP - - 0 - ENSG00000249392 chr4 60416860 60496042 -1 ENSG00000249392 chr4 60416860 60496042 -1 - - -
Organoid_005 MantaBND:71529:0:1:0:0:0:0_MantaBND:71529:0:1:0:0:0:1 BND chr6 136712233 136712234 - chr11 29693359 29693360 + 82 PASS 5 0 12 0 - - - None 5' MAP7 - - - - - - - - - - 0 - ENSG00000135525 chr6 136663875 136871957 -1 - NA - - - - - -
Organoid_005 MantaBND:100959:0:0:1:0:0:0_MantaBND:100959:0:0:1:0:0:1 BND chr10 29421453 29421954 + chr10 29421844 29422208 + 39 PASS 3 0 0 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_005 MantaBND:100959:0:0:2:0:0:0_MantaBND:100959:0:0:2:0:0:1 BND chr10 29421399 29422119 - chr10 29421472 29422259 - 39 PASS 3 0 0 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_005 MantaBND:119706:0:1:0:0:0:1_MantaBND:119706:0:1:0:0:0:0 BND chr12 76695108 76695109 + chr15 53818577 53818578 + 32 PASS 2 0 2 0 - - - - 5' RP11-54A9.1 3' WDR72 FUSION+ 5' of RP11-54A9.1 into 3' of WDR72 - - FUSION+ 5' of RP11-54A9.1 into 3' of WDR72 - - 0 - ENSG00000257219 chr12 76653619 76698911 1 ENSG00000166415 chr15 53805938 54055075 -1 - - -
Organoid_005 MantaDEL:1:6414:6414:1:1:0 DEL chr4 101369602 101369607 + chr4 101369870 101369871 - 78 PASS 11 3 17 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_005 MantaDEL:32800:0:1:0:0:0 DEL chr3 60286144 60286148 + chr3 60393432 60393436 - 213 PASS 30 0 16 0 - - FHIT FHIT - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_005 MantaDEL:32803:0:1:0:0:0 DEL chr3 60348997 60349000 + chr3 60637697 60637700 - 231 PASS 24 0 13 0 - - FHIT FHIT - - - - - - - - - - - - 1 RP11-641C17.4 - NA - - - - NA - - - - - -
Organoid_005 MantaDEL:32814:0:1:0:0:0 DEL chr3 60436931 60436935 + chr3 60553406 60553410 - 167 PASS 5 0 11 0 - - FHIT FHIT - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_005 MantaDEL:80550:0:1:0:0:0 DEL chr7 110743380 110743384 + chr7 110795928 110795932 - 66 PASS 6 0 4 0 - - IMMP2L IMMP2L 3' IMMP2L 5' IMMP2L INTERNL 0 EXONS DELETED - - INTERNL 0 EXONS DELETED - 2 1 snoU13 ENSG00000184903 chr7 110303110 111202573 -1 ENSG00000184903 chr7 110303110 111202573 -1 - - -
Organoid_005 MantaDEL:80550:0:1:0:0:0 DEL chr7 110743380 110743384 + chr7 110795928 110795932 - 66 PASS 6 0 4 0 - - IMMP2L IMMP2L 5' LRRN3 5' IMMP2L - - - 1 - - - 2 1 snoU13 ENSG00000173114 chr7 110731062 110765510 1 ENSG00000184903 chr7 110303110 111202573 -1 - - -
Organoid_005 MantaDEL:81866:0:1:0:0:0 DEL chr7 133622451 133622452 + chr7 133627755 133627756 - 41 PASS 4 0 3 0 - - EXOC4 EXOC4 - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_005 MantaDEL:93302:0:1:0:0:0 DEL chr9 21874325 21874332 + chr9 22094582 22094589 - 327 PASS 30 0 31 0 - - - - 5' MTAP 3' CDKN2B-AS1 FUSION+ 5' of MTAP into 3' of CDKN2B-AS1 - 10 FUSION+ 5' of MTAP into 3' of CDKN2B-AS1 - - 6 C9orf53,CDKN2A,CDKN2B,RP11-149I2.5,RP11-149I2.4,UBA52P6 ENSG00000099810 chr9 21802542 21931646 1 ENSG00000240498 chr9 21994777 22121096 1 - - -
Organoid_005 MantaDEL:93302:0:1:0:0:0 DEL chr9 21874325 21874332 + chr9 22094582 22094589 - 327 PASS 30 0 31 0 - - - - 5' RP11-145E5.5 3' CDKN2B-AS1 FUSION+ 5' of RP11-145E5.5 into 3' of CDKN2B-AS1 - - FUSION+ 5' of RP11-145E5.5 into 3' of CDKN2B-AS1 - - 6 C9orf53,CDKN2A,CDKN2B,RP11-149I2.5,RP11-149I2.4,UBA52P6 ENSG00000264545 chr9 21802635 22032985 1 ENSG00000240498 chr9 21994777 22121096 1 - - -
Organoid_005 MantaDEL:116472:0:1:0:0:0 DEL chr12 13127390 13127395 + chr12 13128401 13128406 - 91 PASS 14 0 6 0 - - - - 5' RP11-392P7.6 3' RP11-392P7.6 INTERNL 0 EXONS DELETED - 3 INTERNL 0 EXONS DELETED - - 0 - ENSG00000247498 chr12 13080660 13137579 1 ENSG00000247498 chr12 13080660 13137579 1 - - -
Organoid_005 MantaDEL:116472:0:1:0:0:0 DEL chr12 13127390 13127395 + chr12 13128401 13128406 - 91 PASS 14 0 6 0 - - - - 5' RP11-392P7.6 5' HEBP1 - - - 3 - - - 2 0 - ENSG00000247498 chr12 13080660 13137579 1 ENSG00000013583 chr12 13127798 13153207 -1 - - -
Organoid_005 MantaDEL:133086:0:0:0:0:0 DEL chr14 85249058 85249059 + chr14 85249549 85249550 - 57 PASS 5 0 5 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_005 MantaDEL:143652:0:1:0:0:0 DEL chr16 78354282 78354283 + chr16 78451476 78451477 - 141 PASS 14 0 21 0 - - WWOX WWOX 5' WWOX 3' WWOX INTERNL 1 EXONS DELETED - 7 INTERNL 1 EXONS DELETED - - 1 LSM3P5 ENSG00000186153 chr16 78133310 79246564 1 ENSG00000186153 chr16 78133310 79246564 1 - - -
Organoid_005 MantaDEL:143686:0:1:0:0:0 DEL chr16 78569337 78569338 + chr16 78574855 78574856 - 316 PASS 24 0 19 0 - - WWOX WWOX 5' WWOX 3' WWOX INTERNL 0 EXONS DELETED - 9 INTERNL 0 EXONS DELETED - - 0 - ENSG00000186153 chr16 78133310 79246564 1 ENSG00000186153 chr16 78133310 79246564 1 - - -
Organoid_005 MantaDEL:143686:0:1:0:0:0 DEL chr16 78569337 78569338 + chr16 78574855 78574856 - 316 PASS 24 0 19 0 - - WWOX WWOX 5' RP11-264L1.3 3' WWOX FUSION+ 5' of RP11-264L1.3 into 3' of WWOX - - FUSION+ 5' of RP11-264L1.3 into 3' of WWOX - - 0 - ENSG00000261837 chr16 78568271 78569545 1 ENSG00000186153 chr16 78133310 79246564 1 - - -
Organoid_005 MantaDEL:143695:0:1:0:0:0 DEL chr16 78564790 78564791 + chr16 78663376 78663377 - 124 PASS 13 0 11 0 - - WWOX WWOX 5' WWOX 3' WWOX INTERNL 0 EXONS DELETED - 9 INTERNL 0 EXONS DELETED - - 1 RP11-264L1.3 ENSG00000186153 chr16 78133310 79246564 1 ENSG00000186153 chr16 78133310 79246564 1 - - -
Organoid_005 MantaDEL:143703:0:1:0:0:0 DEL chr16 78739458 78739463 + chr16 78846671 78846676 - 138 PASS 23 0 11 0 - - WWOX WWOX 5' WWOX 3' WWOX INTERNL 2 EXONS DELETED - 9 INTERNL 2 EXONS DELETED - - 0 - ENSG00000186153 chr16 78133310 79246564 1 ENSG00000186153 chr16 78133310 79246564 1 - - -
Organoid_005 MantaDEL:143734:0:1:0:0:0 DEL chr16 79122793 79122794 + chr16 79230539 79230540 - 61 PASS 5 0 4 0 - - WWOX WWOX 5' WWOX 3' WWOX INTERNL 1 EXONS DELETED - 10 INTERNL 1 EXONS DELETED - - 2 RP11-556H2.3,RP11-556H2.2 ENSG00000186153 chr16 78133310 79246564 1 ENSG00000186153 chr16 78133310 79246564 1 - - -
Organoid_005 MantaDEL:159342:0:1:0:0:0 DEL chr20 12418696 12418698 + chr20 12418784 12418785 - 84 PASS 0 0 15 0 - - MACROD2 MACROD2 - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_005 MantaDUP:TANDEM:25426:0:1:0:0:0 DUP chr2 187400853 187400858 - chr2 187428749 187428754 + 98 PASS 21 0 7 0 - - PDE1A PDE1A - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_005 MantaDUP:TANDEM:25957:0:1:0:0:0 DUP chr2 196274851 196274852 - chr2 196298614 196298615 + 109 PASS 20 0 10 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_005 MantaDUP:TANDEM:26519:0:1:0:0:0 DUP chr2 205770827 205770828 - chr2 205775086 205775087 + 113 PASS 19 0 18 0 - - PARD3B PARD3B 3' PARD3B 5' PARD3B INTERNL PROB INV OR TDUP - - INTERNL PROB INV OR TDUP - 1 0 - ENSG00000116117 chr2 205410516 206484886 1 ENSG00000116117 chr2 205410516 206484886 1 - - -
Organoid_005 MantaDUP:TANDEM:36465:0:1:0:0:0 DUP chr3 125415774 125416157 - chr3 125438140 125438506 + 31 PASS 7 0 0 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
"))
Patient_013=as.data.frame(read.table(text = " Driver SNV_Tumour_013 SNV_Organoid_013 INDEL_Tumour_013 INDEL_Organoid_013 Deletion_Tumour_013 Deletion_Organoid_013
ABCB1 * - * - - - -
ACVR1B * - - - - - -
ACVR2A * - - - - - -
APC * * * - - - -
ARID1A * - - * * * -
ARID1B * * * * * * *
ARID2 * - - * * - -
AXIN1 * - - - - - -
B2M * - - - - - -
BRAF * * * - - * -
C3orf62 * - - - - - -
CCDC102B * * - - - - *
CCND1 * - - - - - -
CCND3 * * * - * - -
CCNE1 * * - - - - -
CD1A * - - - * - -
CDH1 * * * - - - -
CDK6 * - - - - - -
CDKN1B * - - - - - -
CDKN2A * - - - * - -
CHD4 * - - - - - -
CHL1 * * * - * - -
COIL * - - - - - -
CRISPLD1 * - - - - - -
CTNNB1 * - - - - - -
DNAH7 * * * * * - -
EGFR * * * * * - -
ELF3 * - - - - - -
EPHA2 * - - - - - -
EPHA3 * * * * * - -
ERBB2 * - - - - - -
FAM196B * - - - - - -
FBXW7 * - * - - - -
GATA4 * - - - - - -
GATA6 * - - - - - *
GATAD1 * - - - - - -
GPATCH8 * - - - - - -
HIST1H3B * - - - - - -
JAK1 * - - - - - -
KCNQ3 * * * * * - -
KDM6A * * - - - - -
KRAS * * - - - - -
LIN7A * * * - - - -
LRRK2 * - - - * - -
MAP2K7 * - - - - - -
MAP3K1 * - - - * - -
MBD6 * - - - - - -
MDM2 * * * - - - -
MET * * * - - - -
MSH3 * * * - * - -
MUC6 * - - * * - -
MYC * - - - - * -
NAV3 * * * * * - -
NIPBL * * - - - * -
NOTCH1 * - * - - - -
PBRM1 * * * - - - -
PCDH17 * * * * * - -
PIK3CA * * * - - - -
PIK3R1 * - - - - - -
POLQ * * * - - - -
PPM1D * - - - - - -
PTEN * - - * * - -
RASA1 * * * - - * -
RNF43 * - - - - - -
RPL22 * - - - - - -
SCN3A * * * - - - -
SIN3A * - - - - - -
SLIT2 * * * * * - -
SMAD4 * * - - - - *
SMARCA4 * * - - - - -
STK11 * - - - - - -
TGFBR2 * - * - - - -
TP53 * - - - - - -
TRPA1 * - - - - * *
TSHZ3 * * - - - - -
ZFHX3 * * * * - - -
"))
annotated_snv_indel3=as.data.frame(read.table(text = " Sample SYMBOL Location Allele Consequence IMPACT Gene Feature_type Feature BIOTYPE EXON INTRON HGVSc HGVSp cDNA_position CDS_position Protein_position Amino_acids Codons Existing_variation DISTANCE STRAND FLAGS SYMBOL_SOURCE HGNC_ID TSL APPRIS SIFT PolyPhen AF FREQS CLIN_SIG SOMATIC PHENO PUBMED MOTIF_NAME MOTIF_POS HIGH_INF_POS MOTIF_SCORE_CHANGE
Organoid_013 PRDM16 1:3084364-3084365 - intron_variant MODIFIER ENSG00000142611 Transcript ENST00000270722 protein_coding - 16-Jan - - - - - - - - - 1 - HGNC HGNC:14000 1 P3 - - - - - - - - - - - -
Organoid_013 PRDM16 1:3084364-3084365 - intron_variant MODIFIER ENSG00000142611 Transcript ENST00000378391 protein_coding - 16-Jan - - - - - - - - - 1 - HGNC HGNC:14000 1 A2 - - - - - - - - - - - -
Organoid_013 PRDM16 1:3084364-3084365 - intron_variant MODIFIER ENSG00000142611 Transcript ENST00000511072 protein_coding - 15-Jan - - - - - - - - - 1 - HGNC HGNC:14000 5 A2 - - - - - - - - - - - -
Organoid_013 PRDM16 1:3084364-3084365 - intron_variant MODIFIER ENSG00000142611 Transcript ENST00000514189 protein_coding - 15-Jan - - - - - - - - - 1 - HGNC HGNC:14000 5 A2 - - - - - - - - - - - -
Organoid_013 PRDM16 1:3084364-3084365 - intron_variant,non_coding_transcript_variant MODIFIER ENSG00000142611 Transcript ENST00000607632 retained_intron - 1-Jan - - - - - - - - - 1 - HGNC HGNC:14000 2 - - - - - - - - - - - - -
Organoid_013 AL355602.1 1:4486968-4486969 - upstream_gene_variant MODIFIER ENSG00000284694 Transcript ENST00000641472 lincRNA - - - - - - - - - - 2594 -1 - Clone_based_ensembl_gene - - - - - - - - - - - - - - -
Organoid_013 AL365255.1 1:5621157-5621157 A intron_variant,non_coding_transcript_variant MODIFIER ENSG00000236948 Transcript ENST00000413887 lincRNA - 1-Jan - - - - - - - - - -1 - Clone_based_ensembl_gene - 5 - - - - - - - - - - - - -
Organoid_013 AL365255.1 1:5621157-5621157 A intron_variant,non_coding_transcript_variant MODIFIER ENSG00000236948 Transcript ENST00000637702 lincRNA - 2-Jan - - - - - - - - - -1 - Clone_based_ensembl_gene - 2 - - - - - - - - - - - - -
Organoid_013 SLC45A1 1:8348109-8348111 - downstream_gene_variant MODIFIER ENSG00000162426 Transcript ENST00000289877 protein_coding - - - - - - - - - - 3943 1 - HGNC HGNC:17939 1 A2 - - - - - - - - - - - -
Organoid_013 RERE 1:8348109-8348111 - downstream_gene_variant MODIFIER ENSG00000142599 Transcript ENST00000337907 protein_coding - - - - - - - - - - 4286 -1 - HGNC HGNC:9965 1 P2 - - - - - - - - - - - -
Organoid_013 RERE 1:8348109-8348111 - downstream_gene_variant MODIFIER ENSG00000142599 Transcript ENST00000377464 protein_coding - - - - - - - - - - 4295 -1 - HGNC HGNC:9965 5 A2 - - - - - - - - - - - -
Organoid_013 RERE 1:8348109-8348111 - downstream_gene_variant MODIFIER ENSG00000142599 Transcript ENST00000467350 processed_transcript - - - - - - - - - - 4798 -1 - HGNC HGNC:9965 3 - - - - - - - - - - - - -
Organoid_013 SLC45A1 1:8348109-8348111 - downstream_gene_variant MODIFIER ENSG00000162426 Transcript ENST00000471889 protein_coding - - - - - - - - - - 3945 1 - HGNC HGNC:17939 5 P2 - - - - - - - - - - - -
Organoid_013 SLC45A1 1:8348109-8348111 - downstream_gene_variant MODIFIER ENSG00000162426 Transcript ENST00000497660 retained_intron - - - - - - - - - - 3953 1 - HGNC HGNC:17939 1 - - - - - - - - - - - - -
"))
structural_variants3 = as.data.frame(read.delim(text = " Sample ID Type Chrom1 Start1 End1 Strand1 Chrom2 Start2 End2 Strand2 Score Filters Read.pairs...tumour Read.pairs...normal Split.reads...tumour Split.reads...normal MobileElement.node1 MobileElement.node2 FragileSite.node1 FragileSite.node2 endRetained.node1 GeneName.node1 endRetained.node2 GeneName.node2 FusionPrediction.node1 Details.node1 Runthrough.node1 TranscriptsRetained.node1 FusionPrediction.node2 Details.node2 Runthrough.node2 TranscriptsRetained.node2 Num.genes.deleted Genes.deleted EnsemblGeneID.node1 gene.chr.node1 gene.start.node1 gene.end.node1 GeneStrand.node1 EnsemblGeneID.node2 gene.chr.node2 gene.start.node2 gene.end.node2 GeneStrand.node2 Runthrough.node2.chr Runthrough.node2.start Runthrough.node2.end
Tumour_013 MantaBND:0:4068:13091:0:1:0:0_MantaBND:0:4068:13091:0:1:0:1 BND chr7 159126335 159126336 + chr7 159127779 159127780 + 47 PASS 4 0 10 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaBND:0:6167:41706:0:0:0:1_MantaBND:0:6167:41706:0:0:0:0 BND chr8 36535259 36535260 + chr8 130131818 130131819 + 70 PASS 2 0 11 0 - - - - 3' RP11-962G15.1 - - - - - - - - - - 0 - ENSG00000253363 chr8 36394909 36636682 -1 - NA - - - - - -
Tumour_013 MantaBND:0:7896:7897:0:0:0:1_MantaBND:0:7896:7897:0:0:0:0 BND chr5 151504886 151504887 + chrX 11731312 11731313 - 48 PASS 2 0 6 0 - - - NLGN4X 5' CTB-12O2.1 - - - - - - - - - - 0 - ENSG00000254226 chr5 151329132 151650009 1 - NA - - - - - -
Tumour_013 MantaBND:0:7995:7996:0:0:0:0_MantaBND:0:7995:7996:0:0:0:1 BND chr1 225083402 225083403 + chrX 11731435 11731436 + 56 PASS 4 0 13 0 - - USH2A NLGN4X - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaBND:0:7995:8001:0:0:0:1_MantaBND:0:7995:8001:0:0:0:0 BND chr4 108321931 108321933 + chrX 11731945 11731947 - 74 PASS 6 0 5 0 - - - NLGN4X - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaBND:0:7995:8001:1:0:0:1_MantaBND:0:7995:8001:1:0:0:0 BND chr4 108321582 108322058 - chrX 11732411 11732930 + 74 PASS 7 0 0 0 - - - NLGN4X - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaBND:0:7995:8002:0:0:0:0_MantaBND:0:7995:8002:0:0:0:1 BND chr4 81488319 81488323 - chrX 11732233 11732237 - 107 PASS 10 0 15 0 - - - NLGN4X 3' C4orf22 - - - - - - - - - - 0 - ENSG00000197826 chr4 81256874 81884910 1 - NA - - - - - -
Tumour_013 MantaBND:0:7995:8002:1:0:0:0_MantaBND:0:7995:8002:1:0:0:1 BND chr4 81488131 81488642 + chrX 11732435 11733011 + 107 PASS 11 0 0 0 - - - NLGN4X 5' C4orf22 - - - - - - - - - - 0 - ENSG00000197826 chr4 81256874 81884910 1 - NA - - - - - -
Tumour_013 MantaBND:0:7995:30937:0:0:0:1_MantaBND:0:7995:30937:0:0:0:0 BND chr20 38042687 38043266 + chrX 11731430 11731792 + 34 PASS 6 0 0 0 - - - NLGN4X - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaBND:0:7995:33293:0:0:0:1_MantaBND:0:7995:33293:0:0:0:0 BND chrX 11731411 11731824 + chrX 147680386 147681015 + 66 PASS 10 0 0 0 - - NLGN4X - - - 5' AFF2 - - - - - - - - 0 - - NA - - - ENSG00000155966 chrX 147582139 148082193 1 - - -
Tumour_013 MantaBND:0:10919:18192:0:0:0:1_MantaBND:0:10919:18192:0:0:0:0 BND chr11 22516794 22517254 + chr18 19709730 19710122 - 32 PASS 6 0 0 0 - - - - 5' RP11-34N19.1 - - - - - - - - - - 0 - ENSG00000255357 chr11 22513658 22524392 1 - NA - - - - - -
Tumour_013 MantaBND:0:13445:13447:1:0:0:1_MantaBND:0:13445:13447:1:0:0:0 BND chr2 11520706 11521032 + chr12 23675406 23675886 + 41 PASS 5 0 0 0 - - - SOX5 - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaBND:0:13585:13586:0:2:0:0_MantaBND:0:13585:13586:0:2:0:1 BND chr3 157966914 157966915 - chr22 29065911 29065912 + 77 PASS 11 0 9 0 - - - - 3' RSRC1 3' TTC28 - - - - - - - - 0 - ENSG00000174891 chr3 157823644 158263519 1 ENSG00000100154 chr22 28374004 29075853 -1 - - -
Tumour_013 MantaBND:0:20005:20006:0:0:0:1_MantaBND:0:20005:20006:0:0:0:0 BND chr12 24845166 24845171 - chr12 24846561 24846566 - 92 PASS 183 0 144 0 - - SOX5 SOX5 - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaBND:0:20649:20650:0:0:0:0_MantaBND:0:20649:20650:0:0:0:1 BND chr1 46008975 46008976 + chr12 22599313 22599314 + 42 PASS 11 0 12 0 - - - SOX5 - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaBND:0:35445:41706:0:2:0:1_MantaBND:0:35445:41706:0:2:0:0 BND chr8 36535035 36535038 + chr8 50452452 50452455 + 43 PASS 1 0 6 0 - - - - 3' RP11-962G15.1 3' RP11-738G5.2 - - - - - - - - 0 - ENSG00000253363 chr8 36394909 36636682 -1 ENSG00000253206 chr8 50448945 50466973 -1 - - -
Tumour_013 MantaBND:0:35445:42686:2:0:0:1_MantaBND:0:35445:42686:2:0:0:0 BND chr8 50275940 50276393 + chr8 50452416 50452904 + 42 PASS 5 0 0 0 - - - - - - 3' RP11-738G5.2 - - - - - - - - 0 - - NA - - - ENSG00000253206 chr8 50448945 50466973 -1 - - -
Tumour_013 MantaBND:0:35445:42686:4:0:0:1_MantaBND:0:35445:42686:4:0:0:0 BND chr8 50275513 50276060 - chr8 50452002 50452514 - 37 PASS 6 0 0 0 - - - - - - 5' RP11-738G5.2 - - - - - - - - 0 - - NA - - - ENSG00000253206 chr8 50448945 50466973 -1 - - -
Tumour_013 MantaBND:0:35445:43035:1:0:0:1_MantaBND:0:35445:43035:1:0:0:0 BND chr8 36558207 36558782 + chr8 50452390 50452907 + 45 PASS 6 0 0 0 - - - - 3' RP11-962G15.1 3' RP11-738G5.2 - - - - - - - - 0 - ENSG00000253363 chr8 36394909 36636682 -1 ENSG00000253206 chr8 50448945 50466973 -1 - - -
Tumour_013 MantaBND:0:35445:43419:0:0:0:0_MantaBND:0:35445:43419:0:0:0:1 BND chr8 15468163 15468164 - chr8 50452380 50452381 - 80 PASS 3 0 12 0 - - - - 3' TUSC3 5' RP11-738G5.2 FUSION- 5' of RP11-738G5.2 into 3' of TUSC3 - - FUSION- 5' of RP11-738G5.2 into 3' of TUSC3 - - 0 - ENSG00000104723 chr8 15274724 15624158 1 ENSG00000253206 chr8 50448945 50466973 -1 - - -
Tumour_013 MantaBND:0:35445:43419:2:0:0:1_MantaBND:0:35445:43419:2:0:0:0 BND chr8 15468226 15468630 + chr8 50452518 50452922 + 80 PASS 2 0 0 0 - - - - 5' TUSC3 3' RP11-738G5.2 FUSION+ 5' of TUSC3 into 3' of RP11-738G5.2 - - FUSION+ 5' of TUSC3 into 3' of RP11-738G5.2 - - 0 - ENSG00000104723 chr8 15274724 15624158 1 ENSG00000253206 chr8 50448945 50466973 -1 - - -
Tumour_013 MantaBND:0:37084:41706:0:2:0:0_MantaBND:0:37084:41706:0:2:0:1 BND chr8 36535259 36535260 + chr8 68743144 68743145 + 74 PASS 9 0 8 0 - - - - 3' RP11-962G15.1 - - - - - - - - - - 0 - ENSG00000253363 chr8 36394909 36636682 -1 - NA - - - - - -
Tumour_013 MantaBND:0:37364:42686:0:0:0:1_MantaBND:0:37364:42686:0:0:0:0 BND chr8 50275526 50275994 - chr8 55832715 55833140 - 35 PASS 6 0 0 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaBND:0:37712:39893:0:0:0:0_MantaBND:0:37712:39893:0:0:0:1 BND chr8 32550567 32550906 + chr8 40553589 40553968 + 47 PASS 7 0 0 0 - - - - 5' NRG1 3' ZMAT4 FUSION+ 5' of NRG1 into 3' of ZMAT4 - - FUSION+ 5' of NRG1 into 3' of ZMAT4 - - 0 - ENSG00000157168 chr8 31496902 32622548 1 ENSG00000165061 chr8 40388109 40755352 -1 - - -
Tumour_013 MantaBND:0:37712:42686:0:0:0:1_MantaBND:0:37712:42686:0:0:0:0 BND chr8 40553130 40553563 - chr8 50275658 50276072 - 81 PASS 7 0 0 0 - - - - 5' ZMAT4 - - - - - 5 - - - - 0 - ENSG00000165061 chr8 40388109 40755352 -1 - NA - - - - - -
Tumour_013 MantaBND:0:37712:42686:1:0:0:1_MantaBND:0:37712:42686:1:0:0:0 BND chr8 40553566 40554025 + chr8 50275930 50276544 + 81 PASS 9 0 0 0 - - - - 3' ZMAT4 - - - - - - - - - - 0 - ENSG00000165061 chr8 40388109 40755352 -1 - NA - - - - - -
Tumour_013 MantaBND:0:37712:44225:1:0:0:1_MantaBND:0:37712:44225:1:0:0:0 BND chr8 40553165 40553622 - chr8 92541942 92542444 - 48 PASS 6 0 0 0 - - - - 5' ZMAT4 - - - - - 5 - - - - 0 - ENSG00000165061 chr8 40388109 40755352 -1 - NA - - - - - -
Tumour_013 MantaBND:0:37825:42686:0:3:0:1_MantaBND:0:37825:42686:0:3:0:0 BND chr8 50276021 50276025 + chr8 130056304 130056308 + 62 PASS 1 0 15 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaBND:0:39893:42686:0:0:0:0_MantaBND:0:39893:42686:0:0:0:1 BND chr8 32550326 32551105 + chr8 50276064 50276507 + 56 PASS 7 0 0 0 - - - - 5' NRG1 - - - - - - - - - - 0 - ENSG00000157168 chr8 31496902 32622548 1 - NA - - - - - -
Tumour_013 MantaBND:0:39893:42686:3:0:0:0_MantaBND:0:39893:42686:3:0:0:1 BND chr8 32550080 32550498 - chr8 50275516 50275934 - 56 PASS 2 0 0 0 - - - - 3' NRG1 - - - - - - - - - - 0 - ENSG00000157168 chr8 31496902 32622548 1 - NA - - - - - -
Tumour_013 MantaBND:0:39893:44249:0:0:0:0_MantaBND:0:39893:44249:0:0:0:1 BND chr8 32550602 32550606 + chr8 130129801 130129805 + 57 PASS 0 0 10 0 - - - - 5' NRG1 - - - - - - - - - - 0 - ENSG00000157168 chr8 31496902 32622548 1 - NA - - - - - -
Tumour_013 MantaBND:0:40997:42686:0:0:0:0_MantaBND:0:40997:42686:0:0:0:1 BND chr8 36723805 36724251 + chr8 50275922 50276349 + 50 PASS 7 0 0 0 - - - - 5' KCNU1 - - - - - 2 - - - - 0 - ENSG00000215262 chr8 36641842 36793646 1 - NA - - - - - -
Tumour_013 MantaBND:0:41706:42936:0:0:0:0_MantaBND:0:41706:42936:0:0:0:1 BND chr8 36534542 36535023 - chr8 130055843 130056218 - 70 PASS 10 0 0 0 - - - - 5' RP11-962G15.1 - - - - - 1 - - - - 0 - ENSG00000253363 chr8 36394909 36636682 -1 - NA - - - - - -
Tumour_013 MantaBND:0:42554:42686:0:0:0:1_MantaBND:0:42554:42686:0:0:0:0 BND chr8 50276053 50276442 + chr8 77979412 77979977 + 53 PASS 10 0 0 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaBND:0:42572:43035:0:0:0:1_MantaBND:0:42572:43035:0:0:0:0 BND chr8 36557993 36557995 + chr8 79996288 79996290 + 69 PASS 1 0 14 0 - - - - 3' RP11-962G15.1 - - - - - - - - - - 0 - ENSG00000253363 chr8 36394909 36636682 -1 - NA - - - - - -
Tumour_013 MantaBND:0:42572:44107:0:2:0:1_MantaBND:0:42572:44107:0:2:0:0 BND chr8 77685326 77685329 - chr8 79996112 79996115 - 71 PASS 3 0 11 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaBND:0:43522:44225:0:0:0:1_MantaBND:0:43522:44225:0:0:0:0 BND chr8 55811557 55812163 + chr8 92542462 92542908 + 33 PASS 6 0 0 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaBND:1323:4:4:0:1:0:0_MantaBND:1323:4:4:0:1:0:1 BND chr2 223859916 223859917 + chr2 223860010 223860011 + 40 PASS 4 0 9 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaBND:5784:0:1:0:0:0:0_MantaBND:5784:0:1:0:0:0:1 BND chr1 83856348 83856846 + chr7 76476434 76476770 - 50 PASS 7 0 0 0 - - - - - - 3' UPK3B - - - - - - - - 0 - - NA - - - ENSG00000243566 chr7 76139745 76648340 1 - - -
Tumour_013 MantaBND:10871:1:3:0:0:0:1_MantaBND:10871:1:3:0:0:0:0 BND chr6 143560435 143560439 + chr22 41936837 41936841 + 48 PASS 2 0 5 0 - - - - 5' AIG1 3' POLR3H FUSION+ 5' of AIG1 into 3' of POLR3H - 4 FUSION+ 5' of AIG1 into 3' of POLR3H - - 0 - ENSG00000146416 chr6 143381633 143661441 1 ENSG00000100413 chr22 41921808 41940610 -1 - - -
Tumour_013 MantaBND:10871:5:6:0:2:0:1_MantaBND:10871:5:6:0:2:0:0 BND chr1 180253415 180253418 + chr6 143466440 143466443 - 47 PASS 5 0 2 0 - - - - - - 3' AIG1 - - - - - - - - 0 - - NA - - - ENSG00000146416 chr6 143381633 143661441 1 - - -
Tumour_013 MantaBND:10871:6:7:0:0:0:1_MantaBND:10871:6:7:0:0:0:0 BND chr6 143465622 143465623 - chr22 41727456 41727457 - 45 PASS 3 0 4 0 - - - - 3' AIG1 3' ZC3H7B - - - - - - - - 0 - ENSG00000146416 chr6 143381633 143661441 1 ENSG00000100403 chr22 41697526 41756151 1 - - -
Tumour_013 MantaBND:18953:0:1:0:1:0:1_MantaBND:18953:0:1:0:1:0:0 BND chr2 36245841 36245842 - chr7 64113626 64113627 - 30 PASS 2 0 2 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaBND:31664:0:1:0:1:0:1_MantaBND:31664:0:1:0:1:0:0 BND chr2 224944423 224944426 + chr4 12085489 12085492 - 34 PASS 3 0 3 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaBND:32087:0:1:0:0:0:0_MantaBND:32087:0:1:0:0:0:1 BND chr2 229924743 229924744 - chr11 123839050 123839051 + 63 PASS 9 0 5 0 - - - - 5' PID1 - - - - - - - - - - 0 - ENSG00000153823 chr2 229715242 230136001 -1 - NA - - - - - -
Tumour_013 MantaBND:32087:0:2:0:0:0:1_MantaBND:32087:0:2:0:0:0:0 BND chr2 229925028 229925031 + chr11 123486910 123486913 - 80 PASS 13 0 9 0 - - - - 3' PID1 3' GRAMD1B - - - - - - - - 0 - ENSG00000153823 chr2 229715242 230136001 -1 ENSG00000023171 chr11 123396344 123498482 1 - - -
Tumour_013 MantaBND:33161:0:1:0:0:0:1_MantaBND:33161:0:1:0:0:0:0 BND chr3 2025965 2025966 + chr19 32098472 32098473 - 54 PASS 4 0 5 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaBND:33161:1:2:0:1:0:1_MantaBND:33161:1:2:0:1:0:0 BND chr3 2023058 2023062 - chr19 32098620 32098624 + 48 PASS 1 0 6 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaBND:33161:1:3:0:0:0:0_MantaBND:33161:1:3:0:0:0:1 BND chr19 32098621 32098626 - chr19 32108479 32108484 - 50 PASS 2 0 8 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaBND:33161:3:6:0:0:0:1_MantaBND:33161:3:6:0:0:0:0 BND chr3 2070171 2070175 - chr19 32108476 32108480 + 43 PASS 4 0 2 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaBND:33161:5:6:0:1:0:1_MantaBND:33161:5:6:0:1:0:0 BND chr3 2070469 2070470 + chr19 32049221 32049222 + 31 PASS 3 0 2 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaBND:43547:8:12:0:0:0:0_MantaBND:43547:8:12:0:0:0:1 BND chr8 83620016 83620021 + chr8 87817341 87817346 + 79 PASS 11 0 8 0 - - - - - - 5' RP11-386D6.2 - - - - - - - - 0 - - NA - - - ENSG00000253778 chr8 87778163 87830786 1 - - -
Tumour_013 MantaBND:46866:0:1:0:0:0:1_MantaBND:46866:0:1:0:0:0:0 BND chr4 6636265 6636272 - chr11 65522283 65522290 - 31 PASS 2 0 2 0 - - - - - - 3' RP11-770G2.2 - - - - - - - - 0 - - NA - - - ENSG00000255557 chr11 65513200 65539056 1 - - -
Tumour_013 MantaBND:49230:0:1:0:0:0:1_MantaBND:49230:0:1:0:0:0:0 BND chr4 39843936 39843938 + chr4 60776804 60776806 + 53 PASS 6 0 3 0 - - - - 3' PDS5A - - - - - - - - - - 0 - ENSG00000121892 chr4 39824483 39979576 -1 - NA - - - - - -
Tumour_013 MantaBND:49241:0:1:0:0:0:1_MantaBND:49241:0:1:0:0:0:0 BND chr4 40117501 40117502 - chr4 60797719 60797720 - 68 PASS 5 0 7 0 - - - - 3' N4BP2 - - - - - - - - - - 0 - ENSG00000078177 chr4 40058446 40159872 1 - NA - - - - - -
Tumour_013 MantaBND:49409:0:1:0:0:0:1_MantaBND:49409:0:1:0:0:0:0 BND chr4 41995435 41995436 + chr4 43378399 43378400 + 51 PASS 3 0 3 0 - - - - 5' SLC30A9 - - - - - - - - - - 0 - ENSG00000014824 chr4 41992489 42092474 1 - NA - - - - - -
Tumour_013 MantaBND:49497:0:1:0:0:0:0_MantaBND:49497:0:1:0:0:0:1 BND chr4 43258744 43258746 - chr4 43526740 43526742 - 65 PASS 6 0 6 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaBND:52731:0:1:0:0:0:1_MantaBND:52731:0:1:0:0:0:0 BND chr4 91282197 91282199 - chr4 91295463 91295465 - 67 PASS 7 0 7 0 - - CCSER1 CCSER1 3' CCSER1 3' CCSER1 INTERNL PROB INV OR TDUP - - INTERNL PROB INV OR TDUP - - 0 - ENSG00000184305 chr4 91048686 92523064 1 ENSG00000184305 chr4 91048686 92523064 1 - - -
Tumour_013 MantaBND:59823:0:1:0:0:0:1_MantaBND:59823:0:1:0:0:0:0 BND chr4 189612623 189612627 + chr12 73046878 73046882 + 51 PASS 5 0 5 0 - - - - - - 5' TRHDE - - - - - - - 6 0 - - NA - - - ENSG00000072657 chr12 72481046 73059422 1 - - -
Tumour_013 MantaBND:60948:0:1:0:0:0:0_MantaBND:60948:0:1:0:0:0:1 BND chr5 11122698 11122699 - chr5 11130192 11130193 - 32 PASS 3 0 5 0 - - - - 5' CTNND2 5' CTNND2 INTERNL PROB INV OR TDUP - 9 INTERNL PROB INV OR TDUP - 9 0 - ENSG00000169862 chr5 10971952 11904155 -1 ENSG00000169862 chr5 10971952 11904155 -1 - - -
Tumour_013 MantaBND:63142:0:1:0:0:0:1_MantaBND:63142:0:1:0:0:0:0 BND chr5 38416523 38416526 + chr12 25058656 25058659 + 51 PASS 11 0 19 0 - - - SOX5 5' EGFLAM - - - - - 1 - - - - 0 - ENSG00000164318 chr5 38258511 38465123 1 - NA - - - - - -
Tumour_013 MantaBND:63142:0:1:1:0:0:0_MantaBND:63142:0:1:1:0:0:1 BND chr5 38416356 38416360 - chr12 25059359 25059363 + 42 PASS 9 0 8 0 - - - SOX5 3' EGFLAM - - - - - - - - - - 0 - ENSG00000164318 chr5 38258511 38465123 1 - NA - - - - - -
Tumour_013 MantaBND:63442:0:1:0:0:0:1_MantaBND:63442:0:1:0:0:0:0 BND chr5 43356147 43356152 + chr5 44020012 44020017 + 57 PASS 8 0 4 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaBND:68852:0:1:0:0:0:1_MantaBND:68852:0:1:0:0:0:0 BND chr5 133279247 133279249 - chr5 136196163 136196165 - 59 PASS 7 0 8 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaBND:71608:0:1:0:0:0:1_MantaBND:71608:0:1:0:0:0:0 BND chr5 174331778 174331781 + chr5 174332793 174332796 + 47 PASS 9 0 3 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaBND:71619:0:1:0:0:0:1_MantaBND:71619:0:1:0:0:0:0 BND chr5 174307107 174307110 - chr5 174335601 174335604 - 88 PASS 13 0 12 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaBND:71785:0:1:0:0:0:1_MantaBND:71785:0:1:0:0:0:0 BND chr5 177039044 177039049 + chr5 177041400 177041405 + 98 PASS 26 0 18 0 - - - - 5' RP11-1277A3.1 5' RP11-1277A3.1 INTERNL PROB INV OR TDUP - - INTERNL PROB INV OR TDUP - - 0 - ENSG00000247679 chr5 177038254 177046755 1 ENSG00000247679 chr5 177038254 177046755 1 - - -
Tumour_013 MantaBND:71902:0:1:0:1:0:1_MantaBND:71902:0:1:0:1:0:0 BND chr5 178196091 178196092 - chr10 216144 216145 - 152 PASS 25 0 18 0 - - - - 5' AACSP1 3' ZMYND11 FUSION+ 5' of AACSP1 into 3' of ZMYND11 - - FUSION+ 5' of AACSP1 into 3' of ZMYND11 - - 0 - ENSG00000250420 chr5 178191862 178245436 -1 ENSG00000015171 chr10 180405 300577 1 - - -
Tumour_013 MantaBND:71971:0:1:0:1:0:1_MantaBND:71971:0:1:0:1:0:0 BND chr5 178451000 178451001 + chr10 547597 547598 + 72 PASS 8 0 4 0 - - - - 5' ZNF879 3' DIP2C FUSION+ 5' of ZNF879 into 3' of DIP2C - - FUSION+ 5' of ZNF879 into 3' of DIP2C - - 0 - ENSG00000234284 chr5 178450753 178462065 1 ENSG00000151240 chr10 320130 735683 -1 - - -
Tumour_013 MantaBND:76864:0:3:0:0:0:1_MantaBND:76864:0:3:0:0:0:0 BND chr6 62739086 62739521 + chr12 31231639 31232241 + 61 PASS 12 0 0 0 - - - - 3' KHDRBS2 5' DDX11 FUSION- 5' of DDX11 into 3' of KHDRBS2 - - FUSION- 5' of DDX11 into 3' of KHDRBS2 - - 0 - ENSG00000112232 chr6 62389865 62996132 -1 ENSG00000013573 chr12 31226779 31257725 1 - - -
Tumour_013 MantaBND:76864:0:4:0:0:0:0_MantaBND:76864:0:4:0:0:0:1 BND chr6 62739093 62739095 + chr13 23261682 23261684 - 92 PASS 1 0 26 0 - - - - 3' KHDRBS2 - - - - - - - - - - 0 - ENSG00000112232 chr6 62389865 62996132 -1 - NA - - - - - -
Tumour_013 MantaBND:76864:3:5:0:0:0:1_MantaBND:76864:3:5:0:0:0:0 BND chr12 31231937 31231942 + chr13 23261805 23261810 + 108 PASS 20 0 25 0 - - - - 5' DDX11 - - - - - - - - - - 0 - ENSG00000013573 chr12 31226779 31257725 1 - NA - - - - - -
Tumour_013 MantaBND:85772:0:1:0:0:0:1_MantaBND:85772:0:1:0:0:0:0 BND chr7 17471399 17471403 + chr7 20056769 20056773 + 69 PASS 12 0 6 0 - - - - 5' AC019117.1 3' AC005062.2 FUSION+ 5' of AC019117.1 into 3' of AC005062.2 - - FUSION+ 5' of AC019117.1 into 3' of AC005062.2 - - 0 - ENSG00000236318 chr7 17414491 17506288 1 ENSG00000243004 chr7 19958604 20180076 -1 - - -
Tumour_013 MantaBND:85772:1:2:0:0:0:1_MantaBND:85772:1:2:0:0:0:0 BND chr7 20049498 20049501 - chr7 20056831 20056834 - 69 PASS 15 0 9 0 - - - - 5' AC005062.2 5' AC005062.2 INTERNL PROB INV OR TDUP - 1 INTERNL PROB INV OR TDUP - 1 0 - ENSG00000243004 chr7 19958604 20180076 -1 ENSG00000243004 chr7 19958604 20180076 -1 - - -
Tumour_013 MantaBND:88872:0:9:1:0:0:1_MantaBND:88872:0:9:1:0:0:0 BND chr7 62342025 62342316 - chr11 54848432 54848746 - 33 PASS 6 0 0 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaBND:93093:0:1:0:0:0:0_MantaBND:93093:0:1:0:0:0:1 BND chr7 117768397 117768398 - chr7 128880316 128880317 - 59 PASS 9 0 7 0 - - - - - - 3' AHCYL2 - - - - - - - - 0 - - NA - - - ENSG00000158467 chr7 128864864 129070052 1 - - -
Tumour_013 MantaBND:94884:0:2:1:0:0:0_MantaBND:94884:0:2:1:0:0:1 BND chr7 141013280 141013281 - chr7 141256147 141256148 - 49 PASS 4 0 5 0 - - - - 3' TMEM178B 3' AGK - - - - - - - - 0 - ENSG00000261115 chr7 140774032 141180180 1 ENSG00000006530 chr7 141250989 141355044 1 - - -
Tumour_013 MantaBND:96693:0:1:0:0:0:0_MantaBND:96693:0:1:0:0:0:1 BND chr8 3237336 3237341 - chr8 77856152 77856157 - 54 PASS 6 0 7 0 - - - - 5' CSMD1 - - - - - 4 - - - - 0 - ENSG00000183117 chr8 2792875 4852494 -1 - NA - - - - - -
Tumour_013 MantaBND:96700:0:1:0:0:0:1_MantaBND:96700:0:1:0:0:0:0 BND chr8 3292293 3292296 - chr8 65647310 65647313 - 121 PASS 16 0 26 0 - - - - 5' CSMD1 5' CYP7B1 - - - 4 - - - - 0 - ENSG00000183117 chr8 2792875 4852494 -1 ENSG00000172817 chr8 65500320 65711318 -1 - - -
Tumour_013 MantaBND:96704:0:1:0:0:0:1_MantaBND:96704:0:1:0:0:0:0 BND chr8 3339535 3339539 + chr8 5705527 5705531 + 182 PASS 32 0 26 0 - - - - 3' CSMD1 - - - - - - - - - - 0 - ENSG00000183117 chr8 2792875 4852494 -1 - NA - - - - - -
Tumour_013 MantaBND:96716:0:1:0:0:0:1_MantaBND:96716:0:1:0:0:0:0 BND chr8 3290361 3290362 + chr8 130044758 130044759 + 136 PASS 19 0 25 0 - - - - 3' CSMD1 - - - - - - - - - - 0 - ENSG00000183117 chr8 2792875 4852494 -1 - NA - - - - - -
Tumour_013 MantaBND:96768:0:1:0:0:0:0_MantaBND:96768:0:1:0:0:0:1 BND chr8 3887369 3887375 - chr8 64900362 64900368 - 147 PASS 28 0 17 0 - - - - 5' CSMD1 5' RP11-32K4.1 - - - - - - - 1 0 - ENSG00000183117 chr8 2792875 4852494 -1 ENSG00000253554 chr8 64599737 65281115 -1 - - -
Tumour_013 MantaBND:100875:0:1:0:0:0:0_MantaBND:100875:0:1:0:0:0:1 BND chr8 65428760 65428761 + chr8 85341429 85341430 + 130 PASS 27 0 23 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaBND:101056:2:3:0:0:0:0_MantaBND:101056:2:3:0:0:0:1 BND chr8 77857278 77857279 - chr8 77864526 77864527 - 70 PASS 7 0 12 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaBND:101644:0:1:0:0:0:0_MantaBND:101644:0:1:0:0:0:1 BND chr8 77865571 77865574 - chr8 78192254 78192257 - 78 PASS 16 0 4 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaBND:102865:0:1:0:0:0:0_MantaBND:102865:0:1:0:0:0:1 BND chr8 96747643 96747644 - chr8 117128042 117128043 - 148 PASS 30 0 21 0 - - - - 3' KB-1047C11.2 5' LINC00536 FUSION- 5' of LINC00536 into 3' of KB-1047C11.2 - - FUSION- 5' of LINC00536 into 3' of KB-1047C11.2 - - 0 - ENSG00000253773 chr8 96216684 96822364 1 ENSG00000249917 chr8 116962736 117337297 -1 - - -
Tumour_013 MantaBND:119491:0:1:0:0:0:0_MantaBND:119491:0:1:0:0:0:1 BND chr10 74048790 74049096 - chr17 41168670 41169323 + 49 PASS 7 0 0 0 - - - - - - 3' VAT1 - - - - - - - - 0 - - NA - - - ENSG00000108828 chr17 41166622 41177140 -1 - - -
Tumour_013 MantaBND:126048:0:1:0:0:0:0_MantaBND:126048:0:1:0:0:0:1 BND chr11 33799954 33799955 + chr11 40070291 40070292 + 45 PASS 4 0 4 0 - - None - 5' RP11-646J21.6 - - - - - - - - - - 0 - ENSG00000255272 chr11 33797734 33801041 1 - NA - - - - - -
Tumour_013 MantaBND:128550:0:1:0:0:0:0_MantaBND:128550:0:1:0:0:0:1 BND chr11 71504826 71505381 - chr11 72235051 72235522 - 40 PASS 6 0 0 0 - - - - 3' FAM86C1 - - - - - - - - - - 0 - ENSG00000158483 chr11 71498556 71512282 1 - NA - - - - - -
Tumour_013 MantaBND:133025:0:1:0:0:0:1_MantaBND:133025:0:1:0:0:0:0 BND chr12 4745490 4746149 + chr12 4748995 4749706 + 57 PASS 11 0 0 0 - - - - 3' AKAP3 3' AKAP3 INTERNL PROB INV OR TDUP - - INTERNL PROB INV OR TDUP - - 0 - ENSG00000111254 chr12 4724674 4758213 -1 ENSG00000111254 chr12 4724674 4758213 -1 - - -
Tumour_013 MantaBND:133025:0:1:0:0:0:1_MantaBND:133025:0:1:0:0:0:0 BND chr12 4745490 4746149 + chr12 4748995 4749706 + 57 PASS 11 0 0 0 - - - - 3' AKAP3 5' RP11-500M8.7 FUSION- 5' of RP11-500M8.7 into 3' of AKAP3 - - FUSION- 5' of RP11-500M8.7 into 3' of AKAP3 - - 0 - ENSG00000111254 chr12 4724674 4758213 -1 ENSG00000272921 chr12 4714110 4771809 1 - - -
Tumour_013 MantaBND:133025:0:1:0:0:0:1_MantaBND:133025:0:1:0:0:0:0 BND chr12 4745490 4746149 + chr12 4748995 4749706 + 57 PASS 11 0 0 0 - - - - 5' RP11-500M8.7 3' AKAP3 FUSION+ 5' of RP11-500M8.7 into 3' of AKAP3 - - FUSION+ 5' of RP11-500M8.7 into 3' of AKAP3 - - 0 - ENSG00000272921 chr12 4714110 4771809 1 ENSG00000111254 chr12 4724674 4758213 -1 - - -
Tumour_013 MantaBND:133025:0:1:0:0:0:1_MantaBND:133025:0:1:0:0:0:0 BND chr12 4745490 4746149 + chr12 4748995 4749706 + 57 PASS 11 0 0 0 - - - - 5' RP11-500M8.7 5' RP11-500M8.7 INTERNL PROB INV OR TDUP - - INTERNL PROB INV OR TDUP - - 0 - ENSG00000272921 chr12 4714110 4771809 1 ENSG00000272921 chr12 4714110 4771809 1 - - -
Tumour_013 MantaBND:133025:0:2:0:0:0:0_MantaBND:133025:0:2:0:0:0:1 BND chr12 4745751 4745756 - chr12 6402194 6402199 - 83 PASS 11 0 6 0 - - - - 3' RP11-500M8.7 - - - - - - - - - - 0 - ENSG00000272921 chr12 4714110 4771809 1 - NA - - - - - -
Tumour_013 MantaBND:133025:0:2:0:0:0:0_MantaBND:133025:0:2:0:0:0:1 BND chr12 4745751 4745756 - chr12 6402194 6402199 - 83 PASS 11 0 6 0 - - - - 5' AKAP3 - - - - - 2 - - - - 0 - ENSG00000111254 chr12 4724674 4758213 -1 - NA - - - - - -
Tumour_013 MantaBND:134325:0:1:0:0:0:1_MantaBND:134325:0:1:0:0:0:0 BND chr12 21559627 21559628 - chr12 21562400 21562401 - 191 PASS 109 0 105 0 - - SOX5 SOX5 5' SLCO1A2 5' SLCO1A2 INTERNL PROB INV OR TDUP - - INTERNL PROB INV OR TDUP - - 0 - ENSG00000084453 chr12 21417534 21572528 -1 ENSG00000084453 chr12 21417534 21572528 -1 - - -
Tumour_013 MantaBND:134417:0:1:0:0:0:1_MantaBND:134417:0:1:0:0:0:0 BND chr12 22037022 22037024 - chr12 25398481 25398483 - 82 PASS 93 0 65 0 - - SOX5 SOX5 3' RP11-729I10.2 - - - - - - - - - - 0 - ENSG00000257022 chr12 21980144 22040891 1 - NA - - - - - -
Tumour_013 MantaBND:134417:0:1:0:0:0:1_MantaBND:134417:0:1:0:0:0:0 BND chr12 22037022 22037024 - chr12 25398481 25398483 - 82 PASS 93 0 65 0 - - SOX5 SOX5 5' ABCC9 - - - - - 2 - - - - 0 - ENSG00000069431 chr12 21950335 22094336 -1 - NA - - - - - -
Tumour_013 MantaBND:134579:0:1:0:0:0:1_MantaBND:134579:0:1:0:0:0:0 BND chr12 23246069 23246072 + chr12 23246972 23246975 + 34 PASS 16 0 20 0 - - SOX5 SOX5 5' RP11-114G22.1 5' RP11-114G22.1 INTERNL PROB INV OR TDUP - 7 INTERNL PROB INV OR TDUP - 7 0 - ENSG00000256995 chr12 22852793 23327057 1 ENSG00000256995 chr12 22852793 23327057 1 - - -
Tumour_013 MantaBND:134662:0:1:0:0:0:1_MantaBND:134662:0:1:0:0:0:0 BND chr12 23802545 23802546 + chr12 23803838 23803839 + 57 PASS 40 0 34 0 - - SOX5 SOX5 - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaBND:134765:0:1:0:0:0:1_MantaBND:134765:0:1:0:0:0:0 BND chr12 24662633 24662636 - chr12 24663826 24663829 - 59 PASS 116 1 84 0 - - SOX5 SOX5 5' RP11-444D3.1 5' RP11-444D3.1 INTERNL PROB INV OR TDUP - - INTERNL PROB INV OR TDUP - - 0 - ENSG00000255864 chr12 24366190 24715524 -1 ENSG00000255864 chr12 24366190 24715524 -1 - - -
Tumour_013 MantaBND:141931:0:1:0:0:0:1_MantaBND:141931:0:1:0:0:0:0 BND chr12 123802971 123802976 - chr16 88378957 88378962 + 79 PASS 14 0 11 0 - - - - 5' SBNO1 - - - - - - - - - - 0 - ENSG00000139697 chr12 123773656 123849390 -1 - NA - - - - - -
Tumour_013 MantaBND:141931:0:2:0:0:0:1_MantaBND:141931:0:2:0:0:0:0 BND chr12 123803458 123803463 + chr12 124085599 124085604 + 114 PASS 15 0 13 0 - - - - 3' SBNO1 - - - - - - - - - - 0 - ENSG00000139697 chr12 123773656 123849390 -1 - NA - - - - - -
Tumour_013 MantaBND:141931:0:2:2:0:0:0_MantaBND:141931:0:2:2:0:0:1 BND chr12 123803518 123803519 - chr12 124085739 124085740 - 114 PASS 2 0 14 0 - - - - 5' SBNO1 - - - - - - - - - - 0 - ENSG00000139697 chr12 123773656 123849390 -1 - NA - - - - - -
Tumour_013 MantaBND:141931:2:2:4:0:0:0_MantaBND:141931:2:2:4:0:0:1 BND chr12 124085904 124085905 - chr12 124086129 124086130 - 77 PASS 12 0 18 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaBND:141931:2:3:0:0:0:0_MantaBND:141931:2:3:0:0:0:1 BND chr12 124086650 124086651 + chr16 88004095 88004096 - 79 PASS 22 1 20 0 - - - - 5' DDX55 3' BANP FUSION+ 5' of DDX55 into 3' of BANP - - FUSION+ 5' of DDX55 into 3' of BANP - - 0 - ENSG00000111364 chr12 124086624 124105488 1 ENSG00000172530 chr16 87982850 88110924 1 - - -
Tumour_013 MantaBND:165162:0:1:0:0:0:1_MantaBND:165162:0:1:0:0:0:0 BND chr16 56647549 56647552 + chr16 56720017 56720020 + 83 PASS 11 0 9 0 - - - - - - 5' RP11-343H19.2 - - - - - - - - 0 - - NA - - - ENSG00000259827 chr16 56716382 56721719 1 - - -
Tumour_013 MantaBND:165162:0:2:0:0:0:1_MantaBND:165162:0:2:0:0:0:0 BND chr16 56647542 56647545 - chr16 57077195 57077198 - 77 PASS 9 0 9 0 - - - - - - 3' NLRC5 - - - - - - - - 0 - - NA - - - ENSG00000140853 chr16 57023397 57117443 1 - - -
Tumour_013 MantaBND:167573:0:1:0:0:0:0_MantaBND:167573:0:1:0:0:0:1 BND chr17 31140 31555 + chr17 1085680 1086172 + 84 PASS 10 0 0 0 - - - - - - 3' ABR - - - - - - - - 0 - - NA - - - ENSG00000159842 chr17 906758 1132315 -1 - - -
Tumour_013 MantaBND:167573:0:1:0:0:0:0_MantaBND:167573:0:1:0:0:0:1 BND chr17 31140 31555 + chr17 1085680 1086172 + 84 PASS 10 0 0 0 - - - - - - 5' AC016292.1 - - - - - - - - 0 - - NA - - - ENSG00000235361 chr17 1085187 1088380 1 - - -
Tumour_013 MantaBND:167581:0:1:0:0:0:1_MantaBND:167581:0:1:0:0:0:0 BND chr17 33853 33856 - chr17 1087055 1087058 - 71 PASS 10 0 8 0 - - - - 5' AC108004.2 5' ABR - - - - - - - 1 0 - ENSG00000273172 chr17 33615 41378 -1 ENSG00000159842 chr17 906758 1132315 -1 - - -
Tumour_013 MantaBND:167581:0:1:0:0:0:1_MantaBND:167581:0:1:0:0:0:0 BND chr17 33853 33856 - chr17 1087055 1087058 - 71 PASS 10 0 8 0 - - - - 5' AC108004.2 3' AC016292.1 FUSION+ 5' of AC108004.2 into 3' of AC016292.1 - - FUSION+ 5' of AC108004.2 into 3' of AC016292.1 - - 0 - ENSG00000273172 chr17 33615 41378 -1 ENSG00000235361 chr17 1085187 1088380 1 - - -
Tumour_013 MantaBND:169415:0:1:0:0:0:1_MantaBND:169415:0:1:0:0:0:0 BND chr17 25598608 25598611 + chr17 25943617 25943620 + 69 PASS 11 0 6 0 - - - - - - 5' KSR1 - - - - - - - 11 0 - - NA - - - ENSG00000141068 chr17 25783670 25953461 1 - - -
Tumour_013 MantaBND:169421:0:1:0:0:0:1_MantaBND:169421:0:1:0:0:0:0 BND chr17 25748628 25748632 - chr17 25954466 25954470 - 58 PASS 6 0 4 0 - - - - 3' TBC1D3P5 3' AC015688.3 - - - - - - - - 0 - ENSG00000266433 chr17 25744716 25758649 1 ENSG00000266728 chr17 25950390 25967803 1 - - -
Tumour_013 MantaBND:179734:0:1:0:0:0:1_MantaBND:179734:0:1:0:0:0:0 BND chr19 14507251 14507630 + chr19 14877489 14878010 + 34 PASS 14 1 0 0 - - - - 5' CD97 3' EMR2 FUSION+ 5' of CD97 into 3' of EMR2 - 2 FUSION+ 5' of CD97 into 3' of EMR2 - - 0 - ENSG00000123146 chr19 14491313 14519537 1 ENSG00000127507 chr19 14843205 14889353 -1 - - -
Tumour_013 MantaDEL:0:4695:4696:0:0:0 DEL chr3 60410783 60410785 + chr3 60646640 60646642 - 63 PASS 6 0 4 0 - - FHIT FHIT - - - - - - - - - - - - 1 RP11-641C17.4 - NA - - - - NA - - - - - -
Tumour_013 MantaDEL:0:35445:42686:3:0:0 DEL chr8 50275991 50276529 + chr8 50451982 50452526 - 67 PASS 12 0 0 0 - - - - - - 5' RP11-738G5.2 - - - - - - - - 1 RP11-738G5.1 - NA - - - ENSG00000253206 chr8 50448945 50466973 -1 - - -
Tumour_013 MantaDEL:0:36098:42655:0:1:0 DEL chr8 77776521 77776522 + chr8 77860617 77860618 - 69 PASS 2 0 12 0 - - - - - - - - - - - - - - - - 1 RP11-48D4.2 - NA - - - - NA - - - - - -
Tumour_013 MantaDEL:0:37041:37712:0:0:0 DEL chr8 40553686 40553689 + chr8 130129702 130129705 - 82 PASS 8 0 14 0 - - - - 3' ZMAT4 - - - - - - - - - - 1206 C8orf59,GS1-251I9.2,GS1-251I9.4,CA13,RN7SL777P,CTD-2114J12.1,MIR4661,snoU13,RP11-122C21.1,RN7SKP231,RP11-122C21.4,MRPS16P1,GS1-5L10.1,RP11-777J24.1,RP11-700E23.3,RP11-567J20.3,RP11-700E23.2,RP11-770E5.1,RP11-700E23.1,RP11-587H10.1,RP11-567J20.2,RP11-587H10.2,AC026904.1,AC091096.1,RP11-100L22.1,RP11-567J20.1,RP11-770E5.3,RP11-770E5.2,RP11-22C8.1,RP11-10H3.1,RP11-100L22.2,RN7SKP294,RFPL4AP7,RP11-100L22.4,RP11-738G5.1,RP11-100L22.3,PSAT1P1,CTD-3239E11.2,RP11-109P6.2,RP11-401N18.1,RP11-759A9.1,IRF5P1,RP11-759A9.2,LINC00535,CYCSP22,RP11-139G7.1,SNORA7,RP11-401H2.1,RP11-119N19.1,RP11-11C20.1,RP11-11C20.3,RP11-110G21.2,RP11-110G21.1,RP11-546K22.3,RP11-546K22.1,RP11-388K12.1,RP11-388K12.2,RNA5SP274,ZNF317P1,CTD-2006H14.2,RP11-10N23.2,RP11-10N23.4,RP11-10N23.5,RP3-388N13.3,RP3-388N13.2,MIR378D2,PSMA2P2,RPL34P18,AC105081.1,KB-1184D12.1,KB-1247B1.1,RPS4XP10,RP11-267M23.3,RP11-267M23.4,RP11-267M23.6,RP11-267M23.5,RP11-267M23.7,RP11-219B4.5,RP11-22C11.2,RP11-22C11.1,RP11-219B4.6,KB-1090H4.2,Y_RNA,KB-1608C10.2,RP11-546K22.2,RP11-26M5.3,RP11-26M5.2,RP11-1023P17.2,RPL34P17,CTD-3214K23.1,RP11-182E14.1,AC009800.1,AC016113.1,RP11-347C18.5,RP11-162D9.1,RP11-347C18.1,RP11-162D9.3,RP11-347C18.3,RP11-347C18.4,RNU6-1209P,RP11-1081M5.2,MIR3150A,RP11-1081M5.1,RP11-400K9.3,RP11-400K9.4,RP11-400K9.1,RP11-400K9.2,RP11-463C14.1,RP11-1070A24.2,RP11-1070A24.1,RNU6-1331P,RP11-30L15.4,RP11-30L15.6,TDGF1P5,RNU6ATAC32P,RP11-626A5.2,RP11-320N21.2,RP11-767C6.1,KB-1047C11.2,KB-1047C11.1,RP11-328L11.1,RP11-90D11.1,RNU6-690P,AC116154.1,RP11-31K23.1,RP11-31K23.2,RP11-44N17.1,RP11-44N17.2,KB-1043D8.8,KB-1043D8.6,CA1,KB-1448A5.1,RNU6-1172P,KB-1958F4.2,KB-1958F4.1,KB-1000E4.2,U3,KB-1683C8.1,RNU7-177P,KB-1907C4.2,RNU105C,RN7SL250P,RP11-53M11.4,RP11-53M11.2,KB-1589B1.4,RP11-53M11.3,SUMO2P18,RPS23P1,KB-1208A12.3,SNORA72,RNU6-703P,RNU6-914P,KB-1458E12.1,RP11-56A10.1,KB-1517D11.2,KB-1517D11.4,RNU6-748P,KB-1205A7.2,KB-1205A7.1,RPL19P14,RP11-550I15.1,RP11-44N12.4,SBF1P1,MRP63P7,RP11-628E19.2,AC100817.1,RNA5SP265,RP11-318K15.2,SNORA1,AC018607.1,RN7SL798P,RP11-446E9.2,RN7SL323P,RP11-446E9.1,SNORD54,CTA-397H3.3,NPM1P21,SNORA3,RP11-140I16.3,RP11-140I16.2,SDR16C6P,RP11-17A4.2,SEPT10P1,LINC00968,RP11-17A4.3,RP11-17A4.1,RP11-17A4.4,RP11-33E15.1,CA3,RN7SKP85,RP11-44N12.5,RP11-44N12.2,RP11-410L14.2,AC104986.1,RP11-410L14.1,CTD-2340D6.2,CTD-2340D6.1,AP004290.1,AP004289.2,AP004289.1,RNU6-13P,MIR599,AC032027.1,MIR875,CA2,RN7SL350P,RNA5SP266,AC018442.1,RP11-402L5.1,RP11-402L5.2,SNORD77,MIR1273A,RP11-513O17.2,RP11-316J7.4,KB-1991G8.1,KB-173C10.2,MIR4471,KB-173C10.1,KB-1615E4.2,KB-1615E4.3,GAPDHP62,KB-1083B1.1,RNU6-1092P,AP001205.1,RNU6ATAC41P,RPS20P23,RNU4-83P,RPS26P6,AC025674.1,RP11-521I2.3,RN7SL685P,RP11-302J23.1,KB-1460A1.1,RP11-513O17.1,KB-1460A1.2,RP11-513O17.3,LINC00588,RN7SKP249,KB-1460A1.3,KB-1460A1.5,RNU6-596P,RP11-756K15.2,KB-1410C5.5,KB-1410C5.1,KB-1410C5.2,KB-1410C5.3,RNU7-67P,KB-1410C5.4,NACAP1,DUXAP2,KB-1930G5.3,RN7SL563P,KB-1930G5.4,KB-1562D12.1,KB-1562D12.2,KB-1562D12.3,KB-1107E3.1,MIR5680,KB-1073A2.1,KB-431C1.4,SUMO2P19,KB-431C1.5,KB-1980E6.2,RNU6ATAC8P,HSPE1P14,RPS12P15,RNU6-1224P,POU5F1P2,KB-1042C11.1,REXO1L1P,AP003356.1,KB-1732A1.1,REXO1L11P,REXO1L10P,ATP6V0D2,KB-1254G8.1,KB-1507C5.3,RPL5P24,AP003354.1,KB-1507C5.4,NPM1P52,KB-1639H6.2,MTND1P5,KB-1639H6.7,KB-1639H6.8,AP003550.1,KB-1639H6.4,MIR3151,PSKH2,RP11-318M2.2,RPL30P10,RP11-246K15.1,RNU7-174P,RP11-388G22.1,CTD-2339F6.1,RP11-44D19.1,RP11-1112C15.1,RP11-1112C15.2,RP11-648L3.2,RP11-648L3.1,RP11-716D16.1,RP11-114M5.1,RP11-114M5.3,AC068522.4,RNU4-50P,RP11-328K2.1,RP11-25K19.1,RP11-318M2.3,RP11-1C8.6,RNU6-1011P,RP11-1C8.5,RP11-1C8.7,RP11-1C8.4,RP11-5A11.1,SNORA51,RP11-5A11.2,SLC7A13,RNA5SP267,RP11-379I19.2,RP11-771F20.1,AP001572.1,RP11-379I19.1,AP003471.1,AP003471.2,AP003471.3,RP11-379I19.3,MIR548A3,NDUFA5P2,AC012564.1,RP11-200A13.1,RP11-200A13.3,RP11-960H2.2,RP11-200A13.2,RP11-574O7.1,RP11-960H2.1,TMCC1P1,RP11-273P3.1,RP11-642D21.2,RP11-642D21.1,RP11-27P7.1,SLC2A13P1,RP11-152P17.1,RP11-163N6.2,PDCL3P1,AC022555.1,RNU6-1202P,RP11-91I20.4,RP11-91I20.3,RP11-91I20.2,RP11-91I20.1,WWP1,RP11-33I11.2,RP11-33I11.3,AC022182.1,AC022182.2,AC022182.3,NPM1P6,RP11-787D18.2,RP11-787D18.1,KRT8P3,RN7SKP97,MIR4470,RP11-280G9.1,RP11-705O24.1,RP11-152P17.2,RP11-152P17.3,SLC16A14P1,RP11-778D12.2,RP11-395G23.3,RP11-649G15.2,TAGLN2P1,RP11-705O24.3,RP11-705O24.2,RNU7-84P,HMGB1P46,AP000428.1,RP11-705O24.4,PGAM1P13,CTD-2571E19.1,RNA5SP275,NRBF2P4,AP001331.1,CTD-2571E19.3,RP11-35G22.1,RPS17P14,RP11-577N1.1,RP11-577N1.2,RP11-25P11.2,RP11-790J24.1,RP11-790J24.2,RP11-1084E5.1,RP11-122A21.2,RP11-419L20.2,SNORD112,RP11-25D10.2,RNU2-67P,RP11-25D10.1,RP11-696P8.2,RP11-403P13.1,RP11-211F2.1,CTD-2544L4.1,RP11-238I10.1,KB-1299A7.2,KB-1299A7.1,RP11-946L20.1,RP11-946L20.2,RP11-946L20.4,RP11-114O8.1,EEF1A1P37,RP11-1101K5.1,RP11-1101K5.2,RP11-58O3.1,RP11-58O3.2,RNU4-37P,AC024996.1,RPL30P16,MIR2053,RP11-709P2.1,AC107890.1,RP11-267L5.1,RP11-393K19.1,RP11-192P9.1,AF178030.2,LINC00536,XRCC6P4,RP11-442A17.2,RP11-659E9.2,RP11-659E9.4,RP11-16E18.1,YTHDF3-AS1,RP11-16E18.3,RN7SL135P,CTD-3046C4.1,IFITM8P,RP11-45K10.2,RP11-573J24.1,RN7SKP135,RP11-32K4.1,RP11-579E24.2,RP11-579E24.1,COX6CP8,LINC00966,MIR124-2,RP11-21C4.4,RP11-21C4.5,RNA5SP276,AC103863.1,AF130343.1,RP11-536K17.1,RAD21-AS1,MIR3610,RN7SL228P,RP11-1059L18.1,RP11-654G14.1,RN7SL826P,SNORA31,RPS10P16,RPS26P35,RNU6-12P,RP11-278I4.1,RP11-278I4.2,MAL2,RP11-4K16.2,SNORA32,RP11-775B15.2,RP11-775B15.3,RP11-99I9.2,RN7SKP153,RN7SL396P,KB-1471A8.1,RNA5SP277,RP11-760H22.2,CTC-820M8.1,RP11-713M15.1,RP11-713M15.2,RP11-369K17.1,AC011626.1,RP11-369K17.2,AC027238.1,RPL35AP19,AC022909.1,HAS2-AS1,RP11-3G20.1,RP11-3G20.2,RP11-785H20.1,RP11-398G24.2,MRPS36P3,RP11-94A24.1,RP11-96B2.1,LINC01151,RP11-973F15.2,AC016405.1,RP11-44N11.2,RP11-44N11.3,RP11-44N11.1,AC016405.2,RP11-557C18.4,RP11-557C18.3,RNY4P5,HMGB1P19,RP11-539E17.5,RP11-539E17.3,FAM83A-AS1,MIR4663,UBA52P5,RNU6-628P,RP11-468O2.1,RNU6-875P,MIR548D1,DUTP2,IMPDH1P6,RP11-174I12.2,RN7SKP155,CTD-2552K11.2,RP11-245A18.1,FER1L6-AS1,RP11-959I15.4,FER1L6-AS2,RP11-959I15.1,ARF1P3,RP11-37N22.1,RNU6-756P,RP11-383J24.1,RP11-383J24.2,RP11-383J24.6,RNF139-AS1,RP11-158K1.3,RP11-532M24.1,RP11-1082L8.4,MIR4662A,RP11-1082L8.3,LINC00964,RP11-1082L8.1,RMDN1,RP11-465K16.1,RNU6-356P,MIR548AO,RPS29P2,CTD-3080F16.3,RNU6-895P,SNORD65,RP11-21C4.1,RP11-15G16.1,KRT18P37,RP11-1D12.1,RP11-1D12.2,RP11-360L9.4,RP11-89A16.1,RPL31P41,RP11-678D18.1,CTD-3025N20.2,CTD-3025N20.3,RP11-707M3.3,CTD-2532N20.1,AC084082.3,LINC00967,RP11-346I3.4,RP11-346I3.2,RNU6-1324P,PTTG3P,SNHG6,RP11-360L9.7,RP11-360L9.8,MIR486,RP11-930P14.1,SNORD87,RP11-409C19.2,AC109335.1,RNA5SP268,RP11-453N18.1,RP11-7F18.2,RP11-7F18.1,RP11-343B22.2,AC022861.1,RP11-396J6.1,NDUFS5P6,RP11-403D15.2,RP11-930P14.2,RP11-403D15.1,RPL31P40,RN7SL149P,RPS15AP25,AC090571.1,RNA5SP269,RP11-589C21.1,RP11-865I6.2,RP11-589C21.2,RP11-600K15.1,RP11-589C21.6,RNU7-102P,GS1-44D20.1,RP11-589C21.5,RP11-21C17.1,RP11-744J10.3,RP11-231D20.2,RP11-744J10.2,RN7SKP29,RP11-102F4.2,RP11-159H10.4,RP11-159H10.3,RPL5P23,RP11-1007J8.1,RP11-159H10.1,RP11-503E24.2,RN7SL675P,RNA5SP270,SDCBPP2,RP11-503E24.3,RP11-412B14.1,SUMO2P20,RNU1-101P,RP11-152C15.1,RP11-412B14.2,RN7SL806P,BTF3P12,MIR4469,RNU1-124P,RP11-598P20.3,RP11-333A23.1,Metazoa_SRP,RP11-333A23.4,VN1R46P,RP11-333A23.2,RP11-726G23.2,CPNE3,RN7SL19P,RP11-326E22.1,TRAPPC2P2,AC099805.1,RP11-1144P22.1,RP11-281N10.1,U8,AC104012.1,RP11-726G23.11,RPS20P20,RP11-142A23.1,RP11-656G20.1,RP11-1082L8.2,RP11-6D1.3,KIAA0196-AS1,RN7SL329P,RP11-550A5.2,RN7SL590P,RP11-136O12.2,RP11-697B24.1,RNA5SP271,RNU6-442P,RP11-351E7.2,LINC00861,RP11-351E7.1,HAUS1P3,SOD1P3,RP11-622O11.4,KNOP1P5,RP11-313C15.1,RP11-622O11.5,AC090573.1,RFPL4AP5,RP11-65D17.1,RP11-103H7.1,RP11-103H7.2,RNU6-869P,RP11-103H7.3,RP11-103H7.5,RP11-89K10.1,RP11-89K10.2,RNU11-4P,RP11-351C8.1,PCAT1,RP11-359P18.2,PCAT2,PRNCR1,RP11-726G23.3,CASC19,CCAT1,AFG3L2P1,CASC8,RP11-726G23.7,RP11-726G23.10,RP11-382A18.3,RP11-382A18.2,RP11-726G23.8,CASC11,POTEA,PVT1,RP11-1145L24.1,RP11-531A24.3,RNU6-285P,MIR1205,RP11-531A24.7,RNU1-106P,RP11-531A24.5,RNU4-25P,MIR1207,RP11-956J14.1,MIR1208,RP11-956J14.2,RN7SKP226,RP11-434I12.5,RP11-89M16.1,RP11-434I12.2,RP11-434I12.3,AC068570.1,RP11-434I12.4,STAU2-AS1,RP11-181D18.4,RP11-116B19.2,VENTXP6,RP11-463D19.1,RP11-99A14.1,GYG1P1,RPS20P21,RP11-367E12.4,RNU6-1300P,RP11-6I2.3,RNU6-104P,RP11-726G23.12,AC022616.1,RP11-726G23.6,RN7SKP41,CNGB3,RP11-359P18.1,RP11-359P18.7,RP11-359P18.8,SNX18P27,RP11-359P18.5,CYP4F44P,RP11-359P18.6,AC134698.1,RP11-643N23.2,RP11-643N23.1,AC113134.1,HSPA8P13,ASNSP1,RP11-790L1.3,ASNSP4,RP11-101E19.8,TRIM60P15,LINC00293,MTND1P7,RNU6-656P,RP11-101E19.4,RPS3AP32,MTND6P20,RNU6-1197P,RP11-6I2.4,RP1-16A9.1,CTD-2320G14.2,MIR5681A,RP11-730G20.2,RP11-730G20.1,RP11-758M4.4,RP11-758M4.3,RP11-3N13.2,RP11-300E4.2,RP11-697M17.2,CASC9,HIGD1AP6,PKMP4,AC016194.1,RNU2-54P,RP11-706J10.2,LINC01109,LINC01111,ZFHX4-AS1,RP11-115I9.1,MRPL9P1,RP11-48D4.2,hsa-mir-3149,HIGD1AP18,AC105242.1,RP11-38H17.1,RP11-91P17.1,RNU6-1220P,RP11-594N15.2,RP11-594N15.3,RP11-578O24.2,PRKRIRP7,RP11-79H23.3,AC009941.1,RP11-1114I9.1,RP11-758H6.1,RPL3P9,RP11-27N21.3,RP11-26J3.1,RNU7-85P,RP11-26J3.3,RP11-92K15.3,RP11-92K15.1,RN7SL41P,MIR5708,RP11-941H19.1,RP11-941H19.3,RP11-941H19.2,SNORA20,RP11-775E10.1,RNU6-1213P,RP11-48B3.3,RP11-48B3.4,RPSAP47,RP11-48B3.2,RNU2-71P,SLC25A51P3,RN7SL107P,CKS1BP7,RNU11-6P,RN7SL308P,HMGB1P41,RP11-172E10.1,RP11-1149M10.1,RP11-1149M10.2,RP11-363E6.1,RP11-101E19.7,RP11-350F16.1,RP11-350F16.2,MAPK6PS4,UBE2HP1,RN7SKP32,RP11-363E6.4,AC026241.1,RP11-1134I14.2,RP11-363E6.3,RP11-157I4.4,RP11-257P3.3,FTH1P11,IMPA1P,RNU6-819P,RPL10AP2,NIPA2P4,RPS26P34,SLC10A5P1,RP13-923O23.6,HNRNPA1P36,NDUFA5P12,RP11-1134I14.4,RP11-1134I14.8,ATP6V1G1P2,RP11-1134I14.6,IGLV8OR8-1,RP11-697N18.3,RP11-697N18.4,RP11-697N18.1,RP11-697N18.2,RNU6-665P,AC103686.1,RNU6-519P,RP11-769N21.2,CTD-2210A23.1,RNU6-295P,RPL29P19,RP11-354A14.1,RP11-99H20.1,HNRNPA1P4,RP11-653B10.1,RP11-731N10.1,CTD-2272D18.1,CTD-2272D18.2,RP11-296C13.1,RP11-813B8.1,RP11-51M18.1,RP11-120I21.2,TPM3P3,RP11-120I21.3,AC103816.1,RNU6-1040P,RP11-509P12.1,RP11-98H4.1,RP11-98H4.4,ACTBP6,IGJP1,RP11-146E23.2,RP11-219B4.7,RP11-219B4.3,RP11-317J10.2,RP11-317J10.4,RP11-59O2.1,REXO1L8P,REXO1L3P,REXO1L12P,REXO1L9P,REXO1L2P,CTA-392E5.1,RP11-216N21.1,RP11-216N21.2,CTD-3118D11.2,CTD-3118D11.3,CTD-2284J15.1,NTAN1P2,SLC2A3P4,RP11-298P6.5,GOLGA2P1,AC013751.1,UBE2Q2P10,RP11-386D6.1,RP11-386D6.2,RP11-386D6.3,AF121898.3,AF121898.2,AF121898.1,SOX5P,CTB-118P15.2,RP11-586K2.1,RNA5SP272,RP11-69I13.1,RP11-642C5.1,RP11-255L13.1,KRT8P4,RP11-37B2.1,COX6B1P6,RNU6-925P,LINC00534,AF070718.1,RNA5SP273,AB015752.3,LINC01030,RP11-68L18.1,RP11-68L18.2,RP11-662G23.1,GS1-251I9.3,CNBD1,DCAF4L2,MMP16,RIPK2,OSGIN2,NBN,DECR1,CALB1,TMEM64,NECAB1,C8orf88,TMEM55A,OTUD6B,LRRC69,SLC26A7,RUNX1T1,SFRP1,GOLGA7,GINS4,TRIQK,AC117834.1,C8orf87,AC016885.1,FAM92A1,AGPAT6,NKX6-3,ANK1,RBM12B,RBM12B-AS1,TMEM67,PDP1,CDH17,GEM,RAD54B,FSBP,KIAA1429,KAT6A,AP3M2,AC023632.1,ESRP1,PLAT,DPY19L4,INTS8,IKBKB,CCNE2,NDUFAF6,POLB,TP53INP1,PLEKHF2,C8orf37,GDF6,UQCRB,DKK4,VDAC3,MTERFD1,PTDSS1,SLC20A2,SMIM19,CHRNB3,CHRNA6,SDC2,THAP1,RNF170,CPQ,HOOK3,TSPYL5,MTDH,LAPTM4B,RP11-598P20.5,MATN2,FNTA,POMK,HGSNAT,RPL30,C8orf47,SPIDR,HRSP12,POP1,NIPAL2,STK3,KCNS2,OSR2,CEBPD,VPS13B,PRKDC,MCM4,COX6C,RGS22,FBXO43,POLR2K,SPAG1,UBE2V2,EFCAB1,SNAI2,C8orf22,RP11-738G5.2,RNF19A,SNTG1,ANKRD46,SNX31,PABPC1,PXDNL,PCMTD1,AC090186.1,ST18,FAM150A,RB1CC1,NPBWR1,OPRK1,ATP6V1H,YWHAZ,ZNF706,RGS20,GRHL2,NCALD,TCEA1,RRM2B,LYPLA1,UBR5,MRPL15,SOX17,RP1,XKR4,RP11-386G21.1,RP11-386G21.2,TMEM68,KB-1980E6.3,ODF1,KLF10,TGS1,AZIN1,LYN,KB-1507C5.2,RPS20,MOS,PLAG1,ATP6V1C1,C8orf56,BAALC,CHCHD7,FZD6,CTHRC1,SLC25A32,SDR16C5,PENK,DCAF13,IMPAD1,FAM110B,UBXN2B,CYP7A1,SDCBP,RIMS2,NSMAF,DPYS,DCSTAMP,LRP12,RP11-127H5.1,ZFPM2,TOX,CA8,RAB2A,CHD7,OXR1,CLVS1,ABRA,ANGPT1,ASPH,RSPO2,EIF3E,EMC2,TMEM74,TRHR,NUDCD1,ENY2,NKAIN3,PKHD1L1,GGH,TTPA,YTHDF3,BHLHE22,EBAG9,CYP7B1,ARMC1,MTFR1,SYBU,PDE7A,RP11-422N16.3,KCNV1,DNAJC5B,TRIM55,CSMD3,CRH,RRS1,ADHFE1,C8orf46,MYBL1,RP11-67H2.1,TRPS1,EIF3H,UTP23,VCPIP1,C8orf44-SGK3,C8orf44,RAD21,SGK3,MCMDC2,AARD,SLC30A8,TCF24,PPP1R42,MED30,EXT1,COPS5,SAMD12,AC023590.1,TNFRSF11B,COLEC10,NOV,CSPP1,ENPP2,TAF2,DSCC1,ARFGEF1,DEPTOR,COL14A1,CPA6,PREX2,MRPL13,MTBP,RP11-664D7.4,SNTB1,C8orf34,HAS2,ZHX2,DERL1,TBC1D31,SULF1,FAM83A,C8orf76,SLCO5A1,ZHX1-C8ORF76,ZHX1,AC090574.1,PRDM14,NCOA2,ATAD2,TRAM1,AC120194.1,RP11-382J12.1,WDYHV1,LACTB2,XKR9,FBXO32,EYA1,KLHL38,ANXA13,FAM91A1,FER1L6,TMEM65,TRMT12,RNF139,RP11-1102P16.1,TATDN1,RP11-383H13.1,MSC,TRPA1,KCNB2,TERF1,NDUFB9,SBSPON,MTSS1,RPL7,RDH10,ZNF572,SQLE,STAU2,KIAA0196,RP11-463D19.2,UBE2W,NSMCE2,TRIB1,FAM84B,POU5F1B,TCEB1,MYC,TMEM75,TMEM70 ENSG00000165061 chr8 40388109 40755352 -1 - NA - - - - - -
Tumour_013 MantaDEL:0:37084:43654:0:2:0 DEL chr8 68743132 68743134 + chr8 130131741 130131743 - 55 PASS 2 0 9 0 - - - - - - - - - - - - - - - - 812 C8orf59,GS1-251I9.2,GS1-251I9.4,CA13,RN7SL777P,CTD-2114J12.1,MIR4661,snoU13,RP11-122C21.1,RN7SKP231,RP11-122C21.4,MRPS16P1,GS1-5L10.1,RP11-777J24.1,RP11-700E23.3,RP11-700E23.2,RP11-700E23.1,RP11-587H10.1,RP11-587H10.2,AC091096.1,RP11-100L22.1,RP11-100L22.2,RP11-100L22.4,RP11-100L22.3,CTD-3239E11.2,IRF5P1,LINC00535,RP11-388K12.1,RP11-388K12.2,RNA5SP274,ZNF317P1,CTD-2006H14.2,RP11-10N23.2,RP11-10N23.4,RP11-10N23.5,RP3-388N13.3,RP3-388N13.2,MIR378D2,PSMA2P2,RPL34P18,AC105081.1,KB-1184D12.1,KB-1247B1.1,RPS4XP10,RP11-267M23.3,RP11-267M23.4,RP11-267M23.6,RP11-267M23.5,RP11-267M23.7,RP11-219B4.5,RP11-22C11.2,RP11-22C11.1,RP11-219B4.6,KB-1090H4.2,Y_RNA,KB-1608C10.2,RP11-347C18.5,RP11-347C18.1,RP11-347C18.3,RP11-347C18.4,RNU6-1209P,MIR3150A,RP11-320N21.2,KB-1047C11.2,KB-1047C11.1,RP11-328L11.1,RP11-90D11.1,RNU6-690P,AC116154.1,RP11-31K23.1,RP11-31K23.2,RP11-44N17.1,RP11-44N17.2,KB-1043D8.8,KB-1043D8.6,CA1,KB-1448A5.1,RNU6-1172P,KB-1958F4.2,KB-1958F4.1,KB-1000E4.2,U3,KB-1683C8.1,RNU7-177P,KB-1907C4.2,KB-1589B1.4,SUMO2P18,RPS23P1,KB-1208A12.3,SNORA72,RNU6-703P,RNU6-914P,KB-1458E12.1,KB-1517D11.2,KB-1517D11.4,RNU6-748P,KB-1205A7.2,KB-1205A7.1,RPL19P14,RP11-44N12.4,MRP63P7,CA3,RN7SKP85,RP11-44N12.5,RP11-44N12.2,RP11-410L14.2,AC104986.1,RP11-410L14.1,CTD-2340D6.2,CTD-2340D6.1,AP004290.1,AP004289.2,AP004289.1,MIR599,MIR875,CA2,RN7SL350P,AC018442.1,RP11-402L5.1,RP11-402L5.2,SNORD77,MIR1273A,RP11-316J7.4,KB-1991G8.1,KB-173C10.2,MIR4471,KB-173C10.1,KB-1615E4.2,KB-1615E4.3,GAPDHP62,KB-1083B1.1,RNU6-1092P,AP001205.1,RNU6ATAC41P,RPS20P23,RNU4-83P,RPS26P6,RP11-521I2.3,RN7SL685P,RP11-302J23.1,KB-1460A1.1,KB-1460A1.2,RN7SKP249,KB-1460A1.3,KB-1460A1.5,KB-1410C5.5,KB-1410C5.1,KB-1410C5.2,KB-1410C5.3,RNU7-67P,KB-1410C5.4,NACAP1,DUXAP2,KB-1930G5.3,RN7SL563P,KB-1930G5.4,KB-1562D12.1,KB-1562D12.2,KB-1562D12.3,KB-1107E3.1,MIR5680,KB-1073A2.1,KB-431C1.4,SUMO2P19,KB-431C1.5,KB-1980E6.2,RNU6ATAC8P,HSPE1P14,RPS12P15,RNU6-1224P,POU5F1P2,KB-1042C11.1,REXO1L1P,AP003356.1,KB-1732A1.1,REXO1L11P,REXO1L10P,ATP6V0D2,KB-1254G8.1,KB-1507C5.3,RPL5P24,AP003354.1,KB-1507C5.4,NPM1P52,KB-1639H6.2,MTND1P5,KB-1639H6.7,KB-1639H6.8,AP003550.1,KB-1639H6.4,MIR3151,PSKH2,RP11-318M2.2,RP11-318M2.3,RP11-1C8.6,RNU6-1011P,RP11-1C8.5,RP11-1C8.7,RP11-1C8.4,RP11-5A11.1,RP11-5A11.2,SLC7A13,RP11-771F20.1,AP001572.1,AP003471.1,AP003471.2,AP003471.3,MIR548A3,NDUFA5P2,AC012564.1,RP11-200A13.1,RP11-200A13.3,RP11-200A13.2,RP11-574O7.1,TMCC1P1,RP11-273P3.1,RP11-642D21.2,RP11-642D21.1,RP11-152P17.1,WWP1,RP11-152P17.2,RP11-152P17.3,SLC16A14P1,RP11-778D12.2,RP11-395G23.3,RP11-649G15.2,TAGLN2P1,RNU7-84P,HMGB1P46,AP000428.1,PGAM1P13,RNA5SP275,NRBF2P4,AP001331.1,RP11-35G22.1,RPS17P14,RP11-25P11.2,RP11-790J24.1,RP11-790J24.2,RP11-1084E5.1,RP11-122A21.2,RP11-419L20.2,SNORD112,RP11-25D10.2,RNU2-67P,RP11-25D10.1,RP11-696P8.2,RP11-403P13.1,RP11-211F2.1,CTD-2544L4.1,RP11-238I10.1,KB-1299A7.2,KB-1299A7.1,RP11-946L20.1,RP11-946L20.2,RP11-946L20.4,RP11-114O8.1,EEF1A1P37,RP11-1101K5.1,RP11-1101K5.2,RP11-58O3.1,RP11-58O3.2,RNU4-37P,AC024996.1,RPL30P16,MIR2053,RP11-709P2.1,AC107890.1,RP11-267L5.1,RP11-393K19.1,RP11-192P9.1,AF178030.2,LINC00536,RNA5SP276,AC103863.1,AF130343.1,RP11-536K17.1,RAD21-AS1,MIR3610,RN7SL228P,RP11-1059L18.1,RP11-654G14.1,RN7SL826P,SNORA31,RPS10P16,RPS26P35,RNU6-12P,RP11-278I4.1,RP11-278I4.2,MAL2,RP11-4K16.2,SNORA32,RP11-775B15.2,RP11-775B15.3,RP11-99I9.2,RN7SKP153,RN7SL396P,KB-1471A8.1,RNA5SP277,RP11-760H22.2,CTC-820M8.1,RP11-713M15.1,RP11-713M15.2,RP11-369K17.1,AC011626.1,RP11-369K17.2,AC027238.1,RPL35AP19,AC022909.1,HAS2-AS1,RP11-3G20.1,RP11-3G20.2,RP11-785H20.1,RP11-398G24.2,MRPS36P3,RP11-94A24.1,RP11-96B2.1,LINC01151,RP11-973F15.2,AC016405.1,RP11-44N11.2,RP11-44N11.3,RP11-44N11.1,AC016405.2,RP11-557C18.4,RP11-557C18.3,RNY4P5,HMGB1P19,RP11-539E17.5,RP11-539E17.3,FAM83A-AS1,MIR4663,UBA52P5,RNU6-628P,RP11-468O2.1,RNU6-875P,MIR548D1,DUTP2,IMPDH1P6,RP11-174I12.2,RN7SKP155,CTD-2552K11.2,RP11-245A18.1,FER1L6-AS1,RP11-959I15.4,FER1L6-AS2,RP11-959I15.1,ARF1P3,RP11-37N22.1,RNU6-756P,RP11-383J24.1,RP11-383J24.2,RP11-383J24.6,RNF139-AS1,RP11-158K1.3,RP11-532M24.1,RP11-1082L8.4,MIR4662A,RP11-1082L8.3,LINC00964,RP11-1082L8.1,RMDN1,NDUFS5P6,RP11-403D15.2,RP11-403D15.1,RPL31P40,RPS15AP25,RNA5SP269,RP11-865I6.2,RP11-600K15.1,RNU7-102P,GS1-44D20.1,RP11-21C17.1,RP11-744J10.3,RP11-744J10.2,RN7SKP29,RP11-102F4.2,RP11-159H10.4,RP11-159H10.3,RP11-159H10.1,RN7SL675P,RNA5SP270,SDCBPP2,SUMO2P20,RNU1-101P,RP11-152C15.1,BTF3P12,RP11-333A23.1,Metazoa_SRP,RP11-333A23.4,RP11-333A23.2,CPNE3,RN7SL19P,RP11-326E22.1,TRAPPC2P2,AC099805.1,RP11-1144P22.1,RP11-281N10.1,U8,AC104012.1,RPS20P20,RP11-142A23.1,RP11-656G20.1,RP11-1082L8.2,RP11-6D1.3,KIAA0196-AS1,RN7SL329P,RP11-550A5.2,RN7SL590P,RP11-136O12.2,RP11-697B24.1,RNA5SP271,RNU6-442P,RP11-351E7.2,LINC00861,RP11-351E7.1,HAUS1P3,SOD1P3,RP11-622O11.4,KNOP1P5,RP11-313C15.1,RP11-622O11.5,AC090573.1,RFPL4AP5,RP11-65D17.1,RP11-103H7.1,RP11-103H7.2,RNU6-869P,RP11-103H7.3,RP11-103H7.5,RP11-89K10.1,RP11-89K10.2,RNU11-4P,RP11-351C8.1,PCAT1,PCAT2,PRNCR1,CASC19,CCAT1,CASC8,RP11-382A18.3,RP11-382A18.2,CASC11,PVT1,RP11-1145L24.1,RP11-531A24.3,RNU6-285P,MIR1205,RP11-531A24.7,RNU1-106P,RP11-531A24.5,RNU4-25P,MIR1207,RP11-956J14.1,MIR1208,RP11-956J14.2,RN7SKP226,RP11-434I12.5,RP11-89M16.1,RP11-434I12.2,RP11-434I12.3,AC068570.1,RP11-434I12.4,STAU2-AS1,RP11-181D18.4,RP11-116B19.2,VENTXP6,RP11-463D19.1,RP11-99A14.1,GYG1P1,RPS20P21,RP11-367E12.4,RNU6-1300P,RP11-6I2.3,CNGB3,RPS3AP32,RNU6-1197P,RP11-6I2.4,RP1-16A9.1,CTD-2320G14.2,MIR5681A,RP11-730G20.2,RP11-730G20.1,RP11-758M4.4,RP11-758M4.3,RP11-3N13.2,RP11-300E4.2,RP11-697M17.2,CASC9,HIGD1AP6,PKMP4,AC016194.1,RNU2-54P,RP11-706J10.2,LINC01109,LINC01111,ZFHX4-AS1,RP11-115I9.1,MRPL9P1,RP11-48D4.2,hsa-mir-3149,HIGD1AP18,AC105242.1,RP11-38H17.1,RP11-91P17.1,RNU6-1220P,RP11-594N15.2,RP11-594N15.3,RP11-578O24.2,PRKRIRP7,RP11-79H23.3,AC009941.1,RP11-1114I9.1,RP11-758H6.1,RPL3P9,RP11-27N21.3,RP11-26J3.1,RNU7-85P,RP11-26J3.3,RP11-92K15.3,RP11-92K15.1,RN7SL41P,MIR5708,RP11-941H19.1,RP11-941H19.3,RP11-941H19.2,SNORA20,RP11-775E10.1,RNU6-1213P,RP11-48B3.3,RP11-48B3.4,RPSAP47,RP11-48B3.2,RNU2-71P,SLC25A51P3,RN7SL107P,CKS1BP7,RNU11-6P,RN7SL308P,HMGB1P41,RP11-172E10.1,RP11-1149M10.1,RP11-1149M10.2,RP11-363E6.1,UBE2HP1,RP11-363E6.4,RP11-363E6.3,RP11-157I4.4,RP11-257P3.3,FTH1P11,IMPA1P,NIPA2P4,RPS26P34,SLC10A5P1,RP13-923O23.6,HNRNPA1P36,RP11-354A14.1,RP11-99H20.1,HNRNPA1P4,RP11-653B10.1,RP11-731N10.1,CTD-2272D18.1,CTD-2272D18.2,RP11-296C13.1,RP11-813B8.1,RP11-51M18.1,RP11-120I21.2,TPM3P3,RP11-120I21.3,AC103816.1,RNU6-1040P,RP11-509P12.1,RP11-98H4.1,RP11-98H4.4,ACTBP6,IGJP1,RP11-146E23.2,RP11-219B4.7,RP11-219B4.3,RP11-317J10.2,RP11-317J10.4,RP11-59O2.1,REXO1L8P,REXO1L3P,REXO1L12P,REXO1L9P,REXO1L2P,CTA-392E5.1,RP11-216N21.1,RP11-216N21.2,CTD-3118D11.2,CTD-3118D11.3,CTD-2284J15.1,NTAN1P2,SLC2A3P4,RP11-298P6.5,GOLGA2P1,AC013751.1,UBE2Q2P10,RP11-386D6.1,RP11-386D6.2,RP11-386D6.3,AF121898.3,AF121898.2,AF121898.1,SOX5P,CTB-118P15.2,RP11-586K2.1,RNA5SP272,RP11-69I13.1,RP11-642C5.1,RP11-255L13.1,KRT8P4,RP11-37B2.1,COX6B1P6,RNU6-925P,LINC00534,AF070718.1,RNA5SP273,AB015752.3,LINC01030,RP11-68L18.1,RP11-68L18.2,RP11-662G23.1,GS1-251I9.3,CNBD1,DCAF4L2,MMP16,RIPK2,OSGIN2,NBN,DECR1,CALB1,TMEM64,NECAB1,C8orf88,TMEM55A,OTUD6B,LRRC69,SLC26A7,RUNX1T1,TRIQK,AC117834.1,C8orf87,AC016885.1,FAM92A1,RBM12B,RBM12B-AS1,TMEM67,PDP1,CDH17,GEM,RAD54B,FSBP,KIAA1429,AC023632.1,ESRP1,DPY19L4,INTS8,CCNE2,NDUFAF6,TP53INP1,PLEKHF2,C8orf37,GDF6,UQCRB,MTERFD1,PTDSS1,SDC2,CPQ,TSPYL5,MTDH,LAPTM4B,MATN2,RPL30,C8orf47,HRSP12,POP1,NIPAL2,STK3,KCNS2,OSR2,VPS13B,COX6C,RGS22,FBXO43,POLR2K,SPAG1,RNF19A,ANKRD46,SNX31,PABPC1,YWHAZ,ZNF706,GRHL2,NCALD,RRM2B,UBR5,KB-1980E6.3,ODF1,KLF10,AZIN1,KB-1507C5.2,ATP6V1C1,C8orf56,BAALC,FZD6,CTHRC1,SLC25A32,DCAF13,RIMS2,DPYS,DCSTAMP,LRP12,RP11-127H5.1,ZFPM2,OXR1,ABRA,ANGPT1,RSPO2,EIF3E,EMC2,TMEM74,TRHR,NUDCD1,ENY2,PKHD1L1,EBAG9,SYBU,RP11-422N16.3,KCNV1,CSMD3,RP11-67H2.1,TRPS1,EIF3H,UTP23,RAD21,AARD,SLC30A8,MED30,EXT1,SAMD12,AC023590.1,TNFRSF11B,COLEC10,NOV,ENPP2,TAF2,DSCC1,DEPTOR,COL14A1,PREX2,MRPL13,MTBP,RP11-664D7.4,SNTB1,C8orf34,HAS2,ZHX2,DERL1,TBC1D31,SULF1,FAM83A,C8orf76,SLCO5A1,ZHX1-C8ORF76,ZHX1,AC090574.1,PRDM14,NCOA2,ATAD2,TRAM1,AC120194.1,RP11-382J12.1,WDYHV1,LACTB2,XKR9,FBXO32,EYA1,KLHL38,ANXA13,FAM91A1,FER1L6,TMEM65,TRMT12,RNF139,RP11-1102P16.1,TATDN1,RP11-383H13.1,MSC,TRPA1,KCNB2,TERF1,NDUFB9,SBSPON,MTSS1,RPL7,RDH10,ZNF572,SQLE,STAU2,KIAA0196,RP11-463D19.2,UBE2W,NSMCE2,TRIB1,FAM84B,POU5F1B,TCEB1,MYC,TMEM75,TMEM70 - NA - - - - NA - - - - - -
Tumour_013 MantaDEL:0:37364:43419:0:1:0 DEL chr8 15468186 15468187 + chr8 55833122 55833123 - 56 PASS 0 0 9 0 - - - - 5' TUSC3 - - - - - - - - - - 664 PPAPDC1B,WHSC1L1,RP11-567J20.3,RP11-770E5.1,RNU6-1086P,RP11-16P20.2,RP11-567J20.2,MIR3622B,AC026904.1,RP11-16P20.3,RP11-567J20.1,RP11-770E5.3,snoU13,RNU6-1276P,RP11-770E5.2,RP11-22C8.1,RP11-1149M3.2,RP11-10H3.1,MIR4287,RN7SKP294,RFPL4AP7,RP11-597M17.3,RP11-597M17.2,RP11-738G5.1,PSAT1P1,RP11-597M17.1,RP11-109P6.2,RP11-380I10.2,RP11-401N18.1,RP11-759A9.1,RP11-380I10.3,RP11-759A9.2,RP11-380I10.4,RPL5P22,CYCSP22,RP11-181B11.1,RNU6-178P,RP11-139G7.1,RP11-181B11.2,SNORA7,RP11-401H2.1,MIR4288,RP11-119N19.1,RNA5SP259,EXTL3-AS1,RP11-11C20.1,RP11-11C20.3,RP11-110G21.2,RP11-110G21.1,RP11-662B19.2,RP11-662B19.1,HMBOX1-IT1,RNA5SP260,RP11-546K22.3,RP11-546K22.1,CTD-2647L4.4,CTD-2647L4.5,CTD-2647L4.1,RN7SL781P,HMGB1P23,AC084262.1,AC084262.2,AC084262.3,RP4-676L2.1,RP11-486M23.1,RP11-486M23.2,RPL17P33,RP11-546K22.2,LINC00589,RP11-26M5.3,AC145110.1,RP11-26M5.2,RP11-1023P17.2,RPL34P17,CTD-3214K23.1,RP11-182E14.1,AC009800.1,AC016113.1,RP11-162D9.1,RP11-162D9.3,RP11-1081M5.2,RP11-1081M5.1,RP11-400K9.3,RP11-400K9.4,RP11-400K9.1,RP11-400K9.2,RP11-463C14.1,RP11-1070A24.2,RP11-1070A24.1,RNU6-1331P,RP11-30L15.4,RP11-30L15.6,RP11-94H18.1,TDGF1P5,RNU6ATAC32P,RP11-626A5.2,RP11-767C6.1,RP11-94H18.2,RP11-489E7.1,FAM183CP,AC131254.1,MIR3148,MAP2K1P1,RNU6-1218P,RP11-489E7.4,RPS15AP24,RP11-51J9.5,RP11-51J9.4,RP11-51J9.6,HSPA8P11,CTD-2345M20.2,CTD-3107M8.1,CTD-3107M8.2,TUBBP1,RNU105C,RBPMS-AS1,RN7SL250P,RP11-53M11.4,RP11-53M11.2,RP11-53M11.3,CTD-2373N4.5,RNU5A-3P,RP11-56A10.1,RP11-550I15.1,UBXN8,LETM2,RP11-465K4.4,RP5-1009N12.1,RP11-293D9.2,SUMO2P16,RP11-363L24.3,RP11-363L24.2,RP11-566H8.3,RP11-566H8.2,RP11-566H8.1,RNA5SP261,NRG1-IT1,NRG1-IT2,RNA5SP262,RNA5SP263,NRG1-IT3,RP11-1002K11.1,RNU6-663P,RP11-11N9.4,MTND1P6,MTND2P32,RANP9,AC104037.1,RP11-451O18.1,RNU6-528P,RP11-722E23.2,RP11-359B20.1,SNORD13,RP11-359B20.5,SNORA70,RP11-10D7.5,RN7SL621P,RP11-317N12.1,RP11-10D7.2,RN7SL457P,VENTXP5,RP1-273G13.1,RP1-273G13.2,RP1-273G13.3,RP11-431M3.1,RP1-84O15.2,RP11-431M3.2,RP1-84O15.1,RP11-258J10.1,RP11-734J24.1,AC098612.1,LSM12P1,FGFR1,RP11-473J6.1,RP11-89M20.2,RP11-89M20.1,RN7SKP201,RP11-593P24.2,MTND6P19,RP11-593P24.3,RP11-139F9.1,RNU6-533P,RP11-593P24.4,RP11-962G15.1,RPL23P10,RNA5SP264,TPT1P8,AC090453.1,RP11-419C23.1,SMARCE1P4,RP11-527N22.1,RP11-527N22.2,RP11-150O12.1,RP11-150O12.2,RP11-150O12.6,RP11-150O12.5,RP11-150O12.3,RP11-150O12.4,RP11-346L1.2,RNU6-607P,RP11-863K10.2,RP11-863K10.4,RN7SL709P,AC144573.1,KB-1836B5.3,KB-1836B5.1,KB-1836B5.4,RP11-90P5.4,RP11-90P5.5,RP11-90P5.2,RP11-90P5.7,RP11-90P5.1,RP11-513D5.5,RP11-513D5.2,RP11-350N15.5,RP11-350N15.3,RP11-350N15.6,RP11-350N15.4,RPS20P22,RP11-675F6.3,RP11-675F6.4,RNF5P1,RP11-495O10.1,Y_RNA,RP11-723D22.2,RP11-723D22.3,CTD-2544N14.3,SNORD38,RPL3P10,RP11-1113C11.2,ADAM5,RP11-235P11.1,PPM1AP1,ADAM3A,RP11-77B22.1,RP11-77B22.2,RP11-447G11.1,MRPL49P2,RP11-13N12.2,RP11-13N12.1,RN7SL474P,RP11-468H14.2,RP11-468H14.1,RP11-242F4.2,ADAM24P,MIR548V,RP11-326L2.1,RNA5SP256,RP11-156K13.1,RP11-806O11.1,RP11-156K13.2,RP11-156K13.3,CTD-2547L16.1,CTD-2547L16.3,CTD-2547L16.2,NATP,RP11-685B14.1,RP11-685B14.3,RP11-161I2.1,RP11-122L4.1,RPL35P6,AC090420.1,AC123767.1,SNORA62,RP11-420B22.1,RP11-420B22.2,RP11-1080G15.1,CTD-2024D23.1,AC136365.1,KB-1582A10.1,KB-1582A10.2,RP11-44K6.3,RP11-1080G15.2,RP11-618M23.1,RP11-44K6.2,RP11-44K6.4,RP11-618M23.2,RP11-44K6.5,RP11-618M23.4,RP11-1105O14.1,AC100802.3,RP11-359E19.1,RP11-359E19.2,RP11-470M17.2,RPL30P9,RNU6-892P,LZTS1-AS1,CTA-392C11.1,RP11-563N12.2,RP11-404E12.1,U3,RP11-108E14.1,CTA-392C11.2,TMEM97P2,RP11-301G7.1,RP11-369E15.1,RP11-465K16.1,RNU6-356P,RP11-369E15.3,MIR548AO,RP11-369E15.4,RPS29P2,CTD-3080F16.3,RNU6-895P,SNORD65,RP11-369E15.2,RP11-421P23.1,RP11-15G16.1,KRT18P37,RP11-360L9.4,RP11-421P23.2,AC021613.1,RP11-24P4.1,AC009695.1,AC022716.1,OR6R2P,AC091171.1,AC105206.1,MIR320A,CTD-2530N21.4,CTD-2036J7.1,RNU6-336P,RP11-382J24.2,RP11-582J16.4,RP11-582J16.3,RP11-582J16.5,CTD-3247F14.2,RP11-459E5.1,RP11-360L9.7,RP11-360L9.8,MIR486,RP11-930P14.1,RP11-87E22.2,RP11-930P14.2,RN7SL149P,AC090571.1,SNORD112,RP11-589C21.1,RP11-589C21.2,RP11-589C21.6,RP11-589C21.5,RP11-231D20.2,RPL5P23,RP11-1007J8.1,RP11-503E24.2,RP11-503E24.3,RP11-412B14.1,RP11-87E22.1,RN7SL303P,RP11-875O11.1,RP11-412B14.2,RN7SL806P,MIR4469,RP11-875O11.2,RNU1-124P,RP11-598P20.3,RP11-875O11.3,RP11-1149O23.2,VN1R46P,RP11-1149O23.1,RP11-726G23.2,RP11-1149O23.3,RP11-1149O23.4,RP11-177H13.2,CTC-756D1.2,RP11-726G23.11,CTC-756D1.1,CTC-756D1.3,RNU4-71P,RP11-583M2.2,RP11-175E9.1,RP11-359P18.2,RP11-726G23.3,AFG3L2P1,RP11-726G23.7,RP11-726G23.10,RP11-726G23.8,POTEA,RP11-213G6.2,AC012119.1,RP11-175E9.2,SNORA67,RNU1-148P,RP11-203E8.1,RP11-624C23.1,RP11-561E1.1,GS1-72M22.1,NEFL,CTD-2168K21.2,CTD-2168K21.1,RP11-429O2.1,RN7SL651P,RP11-395I14.2,RP11-219J21.1,RP11-219J21.2,RP11-299D14.2,AC090103.1,RNA5SP258,RP11-98P2.1,SDAD1P1,RP11-14I17.2,RP11-14I17.1,RP11-14I17.3,RP11-1G11.2,RNU6-104P,RP11-726G23.12,RP11-384C12.1,AC022616.1,RP11-726G23.6,COX6B1P4,RP11-613H2.1,RN7SKP41,RP11-359P18.1,MIR548H4,RP11-359P18.7,RP11-359P18.8,SNX18P27,RP11-359P18.5,CYP4F44P,RP11-359P18.6,AC134698.1,RP11-643N23.2,RP11-643N23.1,AC113134.1,HSPA8P13,ASNSP1,RP11-790L1.3,ASNSP4,RP11-613H2.2,RP11-101E19.8,AC090150.1,RP11-521M14.1,GULOP,TRIM60P15,LINC00293,MTND1P7,RNU6-656P,RP11-101E19.4,MTND6P20,RP11-101E19.7,RP11-350F16.1,RP11-350F16.2,MAPK6PS4,RN7SKP32,AC026241.1,RP11-1134I14.2,C8orf86,RNU6-819P,RPL10AP2,NDUFA5P12,RP11-1134I14.4,RP11-1134I14.8,ATP6V1G1P2,RP11-1134I14.6,IGLV8OR8-1,RP11-697N18.3,RP11-697N18.4,RP11-697N18.1,RP11-697N18.2,RNU6-665P,AC103686.1,RNU6-519P,RP11-769N21.2,CTD-2210A23.1,RNU6-295P,RPL29P19,TACC1,PLEKHA2,MSR1,FGF20,MICU3,HTRA4,TM2D2,ZDHHC2,CNOT7,ADAM9,VPS37A,MTMR7,SLC7A2,ADAM32,PDGFRL,MTUS1,ADAM18,ADAM2,FGL1,PCM1,IDO1,IDO2,C8orf4,ZMAT4,ASAH1,SFRP1,GOLGA7,GINS4,NAT1,NAT2,PSD3,AGPAT6,SH2D4A,NKX6-3,CSGALNACT1,INTS10,ANK1,LPL,SLC18A1,ATP6V1B2,LZTS1,GFRA2,DOK2,XPO7,KAT6A,AP3M2,NPM2,PLAT,FGF17,DMTN,IKBKB,FAM160B2,NUDT18,HR,REEP4,POLB,LGI3,DKK4,SFTPC,VDAC3,BMP1,SLC20A2,SMIM19,CHRNB3,CHRNA6,THAP1,RNF170,HOOK3,RP11-598P20.5,FNTA,POMK,PHYHIP,POLR3D,HGSNAT,PIWIL2,SLC39A14,SPIDR,PPP3CC,SORBS3,CEBPD,PRKDC,PDLIM2,AC037459.4,C8orf58,MCM4,CCAR2,BIN3,UBE2V2,EFCAB1,EGR3,PEBP4,RHOBTB2,SNAI2,C8orf22,RP11-738G5.2,SNTG1,TNFRSF10B,PXDNL,PCMTD1,TNFRSF10C,TNFRSF10D,TNFRSF10A,CHMP7,R3HCC1,AC090186.1,LOXL2,ST18,ENTPD4,FAM150A,RB1CC1,SLC25A37,NPBWR1,OPRK1,AC051642.1,FP15737,NKX3-1,NKX2-6,STC1,ADAM28,ATP6V1H,RGS20,ADAMDEC1,ADAM7,TCEA1,NEFM,DOCK5,LYPLA1,MRPL15,SOX17,RP1,GNRH1,KCTD9,CDCA2,EBF2,PPP2R2A,BNIP3L,PNMA2,DPYSL2,ADRA1A,RP11-521M14.2,STMN4,TRIM35,PTK2B,CHRNA2,EPHX2,CLU,SCARA3,CCDC25,ESCO2,PBK,SCARA5,NUGGC,ELP3,PNOC,ZNF395,FBXO16,FZD3,EXTL3,INTS9,HMBOX1,KIF13B,DUSP4,TMEM66,LEPROTL1,MBOAT4,DCTN6,RBPMS,GTF2E2,SMIM18,GSR,PPP2CB,TEX15,PURG,WRN,NRG1,FUT10,TTI2,MAK16,RNF122,DUSP26,UNC5D,AC012215.1,KCNU1,ZNF703,RP11-863K10.7,ERLIN2,PROSC,GPR124,BRF2,RAB11FIP1,GOT1L1,ADRB3,EIF4EBP1,ASH2L,STAR,LSM1,BAG4,DDHD2 ENSG00000104723 chr8 15274724 15624158 1 - NA - - - - - -
Tumour_013 MantaDEL:0:39018:42655:0:0:0 DEL chr8 72307116 72307766 + chr8 77776105 77776462 - 52 PASS 7 0 0 0 - - - - - - - - - - - - - - - - 77 TRAPPC2P2,AC099805.1,RP11-1144P22.1,RP11-281N10.1,U8,AC104012.1,RPS20P20,RP11-142A23.1,RP11-656G20.1,RNA5SP271,RP11-351E7.2,RP11-351E7.1,HAUS1P3,RP11-313C15.1,RP11-1145L24.1,RP11-531A24.3,RNU6-285P,RP11-531A24.7,RP11-531A24.5,RP11-956J14.1,RP11-956J14.2,RP11-434I12.5,RP11-434I12.2,RP11-434I12.3,RP11-434I12.4,STAU2-AS1,RP11-181D18.4,RP11-116B19.2,VENTXP6,RP11-463D19.1,RP11-99A14.1,Metazoa_SRP,GYG1P1,Y_RNA,RPS20P21,RP11-367E12.4,RNU6-1300P,RP11-6I2.3,RPS3AP32,RNU6-1197P,RP11-6I2.4,RP1-16A9.1,CTD-2320G14.2,MIR5681A,RP11-730G20.2,RP11-730G20.1,RP11-758M4.4,RP11-758M4.3,RP11-3N13.2,RP11-300E4.2,RP11-697M17.2,CASC9,HIGD1AP6,PKMP4,AC016194.1,snoU13,RNU2-54P,RP11-706J10.2,LINC01109,LINC01111,ZFHX4-AS1,RP11-115I9.1,MRPL9P1,RP11-1102P16.1,RP11-383H13.1,MSC,TRPA1,KCNB2,TERF1,SBSPON,RPL7,RDH10,STAU2,RP11-463D19.2,UBE2W,TCEB1,TMEM70 - NA - - - - NA - - - - - -
Tumour_013 MantaDEL:0:39893:42686:2:0:0 DEL chr8 32550560 32550966 + chr8 50275629 50276026 - 52 PASS 3 0 0 0 - - - - 5' NRG1 - - - - - - - - - - 287 PPAPDC1B,WHSC1L1,RP11-567J20.3,RP11-770E5.1,RP11-567J20.2,AC026904.1,RP11-567J20.1,RP11-770E5.3,RP11-770E5.2,RP11-22C8.1,RP11-10H3.1,RN7SKP294,RFPL4AP7,LETM2,RP11-1002K11.1,RNU6-663P,RP11-11N9.4,MTND1P6,MTND2P32,RANP9,AC104037.1,RP11-451O18.1,RNU6-528P,RP11-722E23.2,RP11-359B20.1,SNORD13,RP11-359B20.5,SNORA70,RP11-10D7.5,RN7SL621P,RP11-317N12.1,RP11-10D7.2,RN7SL457P,VENTXP5,RP1-273G13.1,RP1-273G13.2,RP1-273G13.3,RP11-431M3.1,RP1-84O15.2,RP11-431M3.2,RP1-84O15.1,RP11-258J10.1,RP11-734J24.1,AC098612.1,LSM12P1,FGFR1,RP11-473J6.1,RP11-89M20.2,RP11-89M20.1,RN7SKP201,RP11-593P24.2,MTND6P19,RP11-593P24.3,RP11-139F9.1,RNU6-533P,RP11-593P24.4,RP11-962G15.1,RPL23P10,RNA5SP264,TPT1P8,AC090453.1,RP11-419C23.1,SMARCE1P4,RP11-527N22.1,RP11-527N22.2,RP11-150O12.1,RP11-150O12.2,RP11-150O12.6,RP11-150O12.5,RP11-150O12.3,RP11-150O12.4,RP11-346L1.2,RNU6-607P,RP11-863K10.2,RP11-863K10.4,RN7SL709P,AC144573.1,KB-1836B5.3,KB-1836B5.1,KB-1836B5.4,RP11-90P5.4,RP11-90P5.5,RP11-90P5.2,RP11-90P5.7,RP11-90P5.1,RP11-513D5.5,RP11-513D5.2,RP11-350N15.5,RP11-350N15.3,RP11-350N15.6,RP11-350N15.4,RPS20P22,RP11-675F6.3,RP11-675F6.4,RNF5P1,RP11-495O10.1,Y_RNA,RP11-723D22.2,RP11-723D22.3,CTD-2544N14.3,SNORD38,RPL3P10,RP11-1113C11.2,ADAM5,ADAM3A,RP11-122L4.1,AC123767.1,CTD-2024D23.1,AC136365.1,KB-1582A10.1,KB-1582A10.2,RP11-44K6.3,RP11-44K6.2,RP11-44K6.4,RP11-44K6.5,RP11-359E19.1,RP11-359E19.2,RP11-470M17.2,CTA-392C11.1,CTA-392C11.2,RP11-301G7.1,RP11-465K16.1,RNU6-356P,MIR548AO,RPS29P2,CTD-3080F16.3,RNU6-895P,SNORD65,RP11-15G16.1,KRT18P37,RP11-360L9.4,RP11-360L9.7,RP11-360L9.8,MIR486,RP11-930P14.1,RP11-930P14.2,RN7SL149P,AC090571.1,SNORD112,RP11-589C21.1,RP11-589C21.2,RP11-589C21.6,RP11-589C21.5,snoU13,RP11-231D20.2,RPL5P23,RP11-1007J8.1,RP11-503E24.2,RP11-503E24.3,RP11-412B14.1,RP11-412B14.2,RN7SL806P,MIR4469,RNU1-124P,RP11-598P20.3,VN1R46P,RP11-726G23.2,RP11-726G23.11,RP11-359P18.2,RP11-726G23.3,AFG3L2P1,RP11-726G23.7,RP11-726G23.10,RP11-726G23.8,POTEA,RNU6-104P,RP11-726G23.12,AC022616.1,RP11-726G23.6,U3,RN7SKP41,RP11-359P18.1,RP11-359P18.7,RP11-359P18.8,SNX18P27,RP11-359P18.5,CYP4F44P,RP11-359P18.6,AC134698.1,RP11-643N23.2,RP11-643N23.1,AC113134.1,HSPA8P13,ASNSP1,RP11-790L1.3,ASNSP4,RP11-101E19.8,TRIM60P15,LINC00293,MTND1P7,RNU6-656P,RP11-101E19.4,MTND6P20,RP11-101E19.7,RP11-350F16.1,RP11-350F16.2,MAPK6PS4,RN7SKP32,AC026241.1,RP11-1134I14.2,C8orf86,RNU6-819P,RPL10AP2,NDUFA5P12,RP11-1134I14.4,RP11-1134I14.8,ATP6V1G1P2,RP11-1134I14.6,IGLV8OR8-1,RP11-697N18.3,RP11-697N18.4,RP11-697N18.1,RP11-697N18.2,RNU6-665P,AC103686.1,RNU6-519P,RP11-769N21.2,CTD-2210A23.1,RNU6-295P,RPL29P19,TACC1,PLEKHA2,HTRA4,TM2D2,ADAM9,ADAM32,ADAM18,ADAM2,IDO1,IDO2,C8orf4,ZMAT4,SFRP1,GOLGA7,GINS4,AGPAT6,NKX6-3,ANK1,KAT6A,AP3M2,PLAT,IKBKB,POLB,DKK4,VDAC3,SLC20A2,SMIM19,CHRNB3,CHRNA6,THAP1,RNF170,HOOK3,RP11-598P20.5,FNTA,POMK,HGSNAT,SPIDR,CEBPD,PRKDC,MCM4,UBE2V2,EFCAB1,SNAI2,C8orf22,FUT10,TTI2,MAK16,RNF122,DUSP26,UNC5D,AC012215.1,KCNU1,ZNF703,RP11-863K10.7,ERLIN2,PROSC,GPR124,BRF2,RAB11FIP1,GOT1L1,ADRB3,EIF4EBP1,ASH2L,STAR,LSM1,BAG4,DDHD2 ENSG00000157168 chr8 31496902 32622548 1 - NA - - - - - -
Tumour_013 MantaDEL:0:43382:44107:1:3:0 DEL chr8 36533626 36533631 + chr8 77685377 77685382 - 68 PASS 6 0 7 0 - - - - 3' RP11-962G15.1 - - - - - - - - - - 612 PPAPDC1B,WHSC1L1,RP11-567J20.3,RP11-770E5.1,RP11-567J20.2,AC026904.1,RP11-567J20.1,RP11-770E5.3,RP11-770E5.2,RP11-22C8.1,RP11-10H3.1,RN7SKP294,RFPL4AP7,RP11-738G5.1,PSAT1P1,RP11-109P6.2,RP11-401N18.1,RP11-759A9.1,RP11-759A9.2,CYCSP22,RP11-139G7.1,SNORA7,RP11-401H2.1,RP11-119N19.1,RP11-11C20.1,RP11-11C20.3,RP11-110G21.2,RP11-110G21.1,RP11-546K22.3,RP11-546K22.1,RP11-546K22.2,RP11-26M5.3,RP11-26M5.2,RP11-1023P17.2,RPL34P17,CTD-3214K23.1,RP11-182E14.1,AC009800.1,AC016113.1,RP11-162D9.1,RP11-162D9.3,RP11-1081M5.2,RP11-1081M5.1,RP11-400K9.3,RP11-400K9.4,RP11-400K9.1,RP11-400K9.2,RP11-463C14.1,RP11-1070A24.2,RP11-1070A24.1,RNU6-1331P,RP11-30L15.4,RP11-30L15.6,TDGF1P5,RNU6ATAC32P,RP11-626A5.2,RP11-767C6.1,RNU105C,RN7SL250P,RP11-53M11.4,RP11-53M11.2,RP11-53M11.3,RP11-56A10.1,RP11-550I15.1,SBF1P1,RP11-628E19.2,AC100817.1,RNA5SP265,RP11-318K15.2,SNORA1,AC018607.1,RN7SL798P,RP11-446E9.2,RN7SL323P,RP11-446E9.1,SNORD54,CTA-397H3.3,NPM1P21,SNORA3,RP11-140I16.3,RP11-140I16.2,SDR16C6P,RP11-17A4.2,SEPT10P1,LINC00968,LETM2,RP11-17A4.3,RP11-17A4.1,RP11-17A4.4,RP11-33E15.1,RNU6-13P,AC032027.1,RNA5SP266,RP11-513O17.2,AC025674.1,RP11-513O17.1,RP11-513O17.3,LINC00588,RNU6-596P,RP11-756K15.2,RPL30P10,RP11-246K15.1,RNU7-174P,RP11-388G22.1,CTD-2339F6.1,RP11-44D19.1,RP11-1112C15.1,RP11-1112C15.2,RP11-648L3.2,RP11-648L3.1,RP11-716D16.1,RP11-114M5.1,RP11-114M5.3,AC068522.4,snoU13,RNU4-50P,RP11-328K2.1,RP11-25K19.1,SNORA51,RNA5SP267,RP11-379I19.2,RP11-379I19.1,RP11-379I19.3,RP11-960H2.2,RP11-960H2.1,RP11-27P7.1,SLC2A13P1,RP11-163N6.2,PDCL3P1,AC022555.1,RNU6-1202P,FGFR1,RP11-91I20.4,RP11-91I20.3,RP11-91I20.2,RP11-91I20.1,RNA5SP264,TPT1P8,AC090453.1,RP11-419C23.1,SMARCE1P4,RP11-527N22.1,RP11-527N22.2,RP11-150O12.1,RP11-33I11.2,RP11-33I11.3,AC022182.1,RP11-150O12.2,RP11-150O12.6,RP11-150O12.5,AC022182.2,RP11-150O12.3,AC022182.3,NPM1P6,RP11-787D18.2,RP11-787D18.1,KRT8P3,RN7SKP97,MIR4470,RP11-280G9.1,RP11-705O24.1,RP11-705O24.3,RP11-705O24.2,RP11-705O24.4,CTD-2571E19.1,CTD-2571E19.3,RP11-577N1.1,RP11-577N1.2,RP11-150O12.4,RP11-346L1.2,RNU6-607P,RP11-863K10.2,RP11-863K10.4,RN7SL709P,AC144573.1,KB-1836B5.3,KB-1836B5.1,KB-1836B5.4,RP11-90P5.4,RP11-90P5.5,RP11-90P5.2,RP11-90P5.7,RP11-90P5.1,RP11-513D5.5,RP11-513D5.2,RP11-350N15.5,XRCC6P4,RP11-350N15.3,RP11-442A17.2,RP11-350N15.6,RP11-350N15.4,RPS20P22,RP11-659E9.2,RP11-659E9.4,RP11-16E18.1,YTHDF3-AS1,RP11-675F6.3,RP11-675F6.4,RP11-16E18.3,RNF5P1,RP11-495O10.1,RN7SL135P,CTD-3046C4.1,Y_RNA,RP11-723D22.2,RP11-723D22.3,CTD-2544N14.3,SNORD38,RPL3P10,IFITM8P,RP11-1113C11.2,RP11-45K10.2,RP11-573J24.1,ADAM5,RN7SKP135,RP11-32K4.1,RP11-579E24.2,RP11-579E24.1,COX6CP8,LINC00966,MIR124-2,RP11-21C4.4,RP11-21C4.5,ADAM3A,RP11-122L4.1,AC123767.1,CTD-2024D23.1,AC136365.1,KB-1582A10.1,KB-1582A10.2,RP11-44K6.3,RP11-44K6.2,RP11-44K6.4,RP11-44K6.5,RP11-359E19.1,RP11-359E19.2,RP11-470M17.2,CTA-392C11.1,CTA-392C11.2,RP11-301G7.1,RP11-465K16.1,RNU6-356P,MIR548AO,RPS29P2,CTD-3080F16.3,RNU6-895P,SNORD65,RP11-21C4.1,RP11-15G16.1,KRT18P37,RP11-1D12.1,RP11-1D12.2,RP11-360L9.4,RP11-89A16.1,RPL31P41,RP11-678D18.1,CTD-3025N20.2,CTD-3025N20.3,RP11-707M3.3,CTD-2532N20.1,AC084082.3,LINC00967,RP11-346I3.4,RP11-346I3.2,RNU6-1324P,PTTG3P,SNHG6,RP11-360L9.7,RP11-360L9.8,MIR486,RP11-930P14.1,SNORD87,RP11-409C19.2,AC109335.1,RNA5SP268,RP11-453N18.1,RP11-7F18.2,RP11-7F18.1,RP11-343B22.2,AC022861.1,RP11-396J6.1,NDUFS5P6,RP11-403D15.2,RP11-930P14.2,RP11-403D15.1,RPL31P40,RN7SL149P,RPS15AP25,AC090571.1,SNORD112,RNA5SP269,RP11-589C21.1,RP11-865I6.2,RP11-589C21.2,RP11-600K15.1,RP11-589C21.6,RNU7-102P,GS1-44D20.1,RP11-589C21.5,RP11-21C17.1,RP11-744J10.3,RP11-231D20.2,RP11-744J10.2,RN7SKP29,RP11-102F4.2,RP11-159H10.4,RP11-159H10.3,RPL5P23,RP11-1007J8.1,RP11-159H10.1,RP11-503E24.2,RN7SL675P,RNA5SP270,SDCBPP2,RP11-503E24.3,RP11-412B14.1,SUMO2P20,RNU1-101P,RP11-152C15.1,RP11-412B14.2,RN7SL806P,BTF3P12,MIR4469,RNU1-124P,RP11-598P20.3,RP11-333A23.1,Metazoa_SRP,RP11-333A23.4,VN1R46P,RP11-333A23.2,RP11-726G23.2,RN7SL19P,RP11-326E22.1,TRAPPC2P2,AC099805.1,RP11-1144P22.1,RP11-281N10.1,U8,AC104012.1,RP11-726G23.11,RPS20P20,RP11-142A23.1,RP11-656G20.1,RNA5SP271,RP11-351E7.2,RP11-351E7.1,HAUS1P3,RP11-313C15.1,RP11-359P18.2,RP11-726G23.3,AFG3L2P1,RP11-726G23.7,RP11-726G23.10,RP11-726G23.8,POTEA,RP11-1145L24.1,RP11-531A24.3,RNU6-285P,RP11-531A24.7,RP11-531A24.5,RP11-956J14.1,RP11-956J14.2,RP11-434I12.5,RP11-434I12.2,RP11-434I12.3,RP11-434I12.4,STAU2-AS1,RP11-181D18.4,RP11-116B19.2,VENTXP6,RP11-463D19.1,RP11-99A14.1,GYG1P1,RPS20P21,RP11-367E12.4,RNU6-1300P,RP11-6I2.3,RNU6-104P,RP11-726G23.12,AC022616.1,RP11-726G23.6,U3,RN7SKP41,RP11-359P18.1,RP11-359P18.7,RP11-359P18.8,SNX18P27,RP11-359P18.5,CYP4F44P,RP11-359P18.6,AC134698.1,RP11-643N23.2,RP11-643N23.1,AC113134.1,HSPA8P13,ASNSP1,RP11-790L1.3,ASNSP4,RP11-101E19.8,TRIM60P15,LINC00293,MTND1P7,RNU6-656P,RP11-101E19.4,RPS3AP32,MTND6P20,RNU6-1197P,RP11-6I2.4,RP1-16A9.1,CTD-2320G14.2,MIR5681A,RP11-730G20.2,RP11-730G20.1,RP11-758M4.4,RP11-758M4.3,RP11-3N13.2,RP11-300E4.2,RP11-697M17.2,CASC9,HIGD1AP6,PKMP4,AC016194.1,RNU2-54P,RP11-706J10.2,LINC01109,LINC01111,ZFHX4-AS1,RP11-115I9.1,MRPL9P1,RP11-101E19.7,RP11-350F16.1,RP11-350F16.2,MAPK6PS4,RN7SKP32,AC026241.1,RP11-1134I14.2,C8orf86,RNU6-819P,RPL10AP2,NDUFA5P12,RP11-1134I14.4,RP11-1134I14.8,ATP6V1G1P2,RP11-1134I14.6,IGLV8OR8-1,RP11-697N18.3,RP11-697N18.4,RP11-697N18.1,RP11-697N18.2,RNU6-665P,AC103686.1,RNU6-519P,RP11-769N21.2,CTD-2210A23.1,RNU6-295P,RPL29P19,TACC1,PLEKHA2,HTRA4,TM2D2,ADAM9,ADAM32,ADAM18,ADAM2,IDO1,IDO2,C8orf4,ZMAT4,SFRP1,GOLGA7,GINS4,AGPAT6,NKX6-3,ANK1,KAT6A,AP3M2,PLAT,IKBKB,POLB,DKK4,VDAC3,SLC20A2,SMIM19,CHRNB3,CHRNA6,THAP1,RNF170,HOOK3,RP11-598P20.5,FNTA,POMK,HGSNAT,SPIDR,CEBPD,PRKDC,MCM4,UBE2V2,EFCAB1,SNAI2,C8orf22,RP11-738G5.2,SNTG1,PXDNL,PCMTD1,AC090186.1,ST18,FAM150A,RB1CC1,NPBWR1,OPRK1,ATP6V1H,RGS20,TCEA1,LYPLA1,MRPL15,SOX17,RP1,XKR4,RP11-386G21.1,RP11-386G21.2,TMEM68,TGS1,LYN,RPS20,MOS,PLAG1,CHCHD7,SDR16C5,PENK,IMPAD1,FAM110B,UBXN2B,CYP7A1,SDCBP,NSMAF,TOX,CA8,RAB2A,CHD7,CLVS1,ASPH,NKAIN3,GGH,TTPA,YTHDF3,BHLHE22,CYP7B1,ARMC1,MTFR1,PDE7A,DNAJC5B,TRIM55,CRH,RRS1,ADHFE1,C8orf46,MYBL1,VCPIP1,C8orf44-SGK3,C8orf44,SGK3,MCMDC2,TCF24,PPP1R42,COPS5,CSPP1,ARFGEF1,CPA6,PREX2,RP11-664D7.4,C8orf34,SULF1,KCNU1,ZNF703,RP11-863K10.7,ERLIN2,PROSC,SLCO5A1,AC090574.1,PRDM14,GPR124,NCOA2,BRF2,RAB11FIP1,TRAM1,AC120194.1,RP11-382J12.1,GOT1L1,ADRB3,EIF4EBP1,LACTB2,ASH2L,XKR9,EYA1,STAR,LSM1,BAG4,DDHD2,RP11-1102P16.1,RP11-383H13.1,MSC,TRPA1,KCNB2,TERF1,SBSPON,RPL7,RDH10,STAU2,RP11-463D19.2,UBE2W,TCEB1,TMEM70 ENSG00000253363 chr8 36394909 36636682 -1 - NA - - - - - -
Tumour_013 MantaDEL:0:43419:44107:0:1:0 DEL chr8 15468250 15468253 + chr8 77685336 77685339 - 84 PASS 1 0 17 0 - - - - 5' TUSC3 - - - - - - - - - - 971 PPAPDC1B,WHSC1L1,RP11-567J20.3,RP11-770E5.1,RNU6-1086P,RP11-16P20.2,RP11-567J20.2,MIR3622B,AC026904.1,RP11-16P20.3,RP11-567J20.1,RP11-770E5.3,snoU13,RNU6-1276P,RP11-770E5.2,RP11-22C8.1,RP11-1149M3.2,RP11-10H3.1,MIR4287,RN7SKP294,RFPL4AP7,RP11-597M17.3,RP11-597M17.2,RP11-738G5.1,PSAT1P1,RP11-597M17.1,RP11-109P6.2,RP11-380I10.2,RP11-401N18.1,RP11-759A9.1,RP11-380I10.3,RP11-759A9.2,RP11-380I10.4,RPL5P22,CYCSP22,RP11-181B11.1,RNU6-178P,RP11-139G7.1,RP11-181B11.2,SNORA7,RP11-401H2.1,MIR4288,RP11-119N19.1,RNA5SP259,EXTL3-AS1,RP11-11C20.1,RP11-11C20.3,RP11-110G21.2,RP11-110G21.1,RP11-662B19.2,RP11-662B19.1,HMBOX1-IT1,RNA5SP260,RP11-546K22.3,RP11-546K22.1,CTD-2647L4.4,CTD-2647L4.5,CTD-2647L4.1,RN7SL781P,HMGB1P23,AC084262.1,AC084262.2,AC084262.3,RP4-676L2.1,RP11-486M23.1,RP11-486M23.2,RPL17P33,RP11-546K22.2,LINC00589,RP11-26M5.3,AC145110.1,RP11-26M5.2,RP11-1023P17.2,RPL34P17,CTD-3214K23.1,RP11-182E14.1,AC009800.1,AC016113.1,RP11-162D9.1,RP11-162D9.3,RP11-1081M5.2,RP11-1081M5.1,RP11-400K9.3,RP11-400K9.4,RP11-400K9.1,RP11-400K9.2,RP11-463C14.1,RP11-1070A24.2,RP11-1070A24.1,RNU6-1331P,RP11-30L15.4,RP11-30L15.6,RP11-94H18.1,TDGF1P5,RNU6ATAC32P,RP11-626A5.2,RP11-767C6.1,RP11-94H18.2,RP11-489E7.1,FAM183CP,AC131254.1,MIR3148,MAP2K1P1,RNU6-1218P,RP11-489E7.4,RPS15AP24,RP11-51J9.5,RP11-51J9.4,RP11-51J9.6,HSPA8P11,CTD-2345M20.2,CTD-3107M8.1,CTD-3107M8.2,TUBBP1,RNU105C,RBPMS-AS1,RN7SL250P,RP11-53M11.4,RP11-53M11.2,RP11-53M11.3,CTD-2373N4.5,RNU5A-3P,RP11-56A10.1,RP11-550I15.1,SBF1P1,RP11-628E19.2,AC100817.1,UBXN8,RNA5SP265,RP11-318K15.2,SNORA1,AC018607.1,RN7SL798P,RP11-446E9.2,RN7SL323P,RP11-446E9.1,SNORD54,CTA-397H3.3,NPM1P21,SNORA3,RP11-140I16.3,RP11-140I16.2,SDR16C6P,RP11-17A4.2,SEPT10P1,LINC00968,LETM2,RP11-17A4.3,RP11-17A4.1,RP11-17A4.4,RP11-33E15.1,RNU6-13P,AC032027.1,RNA5SP266,RP11-513O17.2,AC025674.1,RP11-513O17.1,RP11-513O17.3,LINC00588,RNU6-596P,RP11-756K15.2,RP11-465K4.4,RP5-1009N12.1,RP11-293D9.2,SUMO2P16,RP11-363L24.3,RP11-363L24.2,RP11-566H8.3,RP11-566H8.2,RP11-566H8.1,RNA5SP261,NRG1-IT1,NRG1-IT2,RNA5SP262,RNA5SP263,NRG1-IT3,RP11-1002K11.1,RNU6-663P,RP11-11N9.4,MTND1P6,RPL30P10,RP11-246K15.1,RNU7-174P,RP11-388G22.1,CTD-2339F6.1,RP11-44D19.1,RP11-1112C15.1,RP11-1112C15.2,RP11-648L3.2,RP11-648L3.1,RP11-716D16.1,MTND2P32,RANP9,AC104037.1,RP11-451O18.1,RNU6-528P,RP11-114M5.1,RP11-722E23.2,RP11-359B20.1,RP11-114M5.3,AC068522.4,SNORD13,RP11-359B20.5,SNORA70,RP11-10D7.5,RNU4-50P,RP11-328K2.1,RP11-25K19.1,RN7SL621P,RP11-317N12.1,SNORA51,RNA5SP267,RP11-10D7.2,RP11-379I19.2,RP11-379I19.1,RN7SL457P,VENTXP5,RP11-379I19.3,RP1-273G13.1,RP11-960H2.2,RP1-273G13.2,RP11-960H2.1,RP11-27P7.1,SLC2A13P1,RP1-273G13.3,RP11-163N6.2,RP11-431M3.1,RP1-84O15.2,RP11-431M3.2,RP1-84O15.1,PDCL3P1,RP11-258J10.1,RP11-734J24.1,AC022555.1,AC098612.1,LSM12P1,RNU6-1202P,FGFR1,RP11-91I20.4,RP11-91I20.3,RP11-91I20.2,RP11-91I20.1,RP11-473J6.1,RP11-89M20.2,RP11-89M20.1,RN7SKP201,RP11-593P24.2,MTND6P19,RP11-593P24.3,RP11-139F9.1,RNU6-533P,RP11-593P24.4,RP11-962G15.1,RPL23P10,RNA5SP264,TPT1P8,AC090453.1,RP11-419C23.1,SMARCE1P4,RP11-527N22.1,RP11-527N22.2,RP11-150O12.1,RP11-33I11.2,RP11-33I11.3,AC022182.1,RP11-150O12.2,RP11-150O12.6,RP11-150O12.5,AC022182.2,RP11-150O12.3,AC022182.3,NPM1P6,RP11-787D18.2,RP11-787D18.1,KRT8P3,RN7SKP97,MIR4470,RP11-280G9.1,RP11-705O24.1,RP11-705O24.3,RP11-705O24.2,RP11-705O24.4,CTD-2571E19.1,CTD-2571E19.3,RP11-577N1.1,RP11-577N1.2,RP11-150O12.4,RP11-346L1.2,RNU6-607P,RP11-863K10.2,RP11-863K10.4,RN7SL709P,AC144573.1,KB-1836B5.3,KB-1836B5.1,KB-1836B5.4,RP11-90P5.4,RP11-90P5.5,RP11-90P5.2,RP11-90P5.7,RP11-90P5.1,RP11-513D5.5,RP11-513D5.2,RP11-350N15.5,XRCC6P4,RP11-350N15.3,RP11-442A17.2,RP11-350N15.6,RP11-350N15.4,RPS20P22,RP11-659E9.2,RP11-659E9.4,RP11-16E18.1,YTHDF3-AS1,RP11-675F6.3,RP11-675F6.4,RP11-16E18.3,RNF5P1,RP11-495O10.1,RN7SL135P,CTD-3046C4.1,Y_RNA,RP11-723D22.2,RP11-723D22.3,CTD-2544N14.3,SNORD38,RPL3P10,IFITM8P,RP11-1113C11.2,RP11-45K10.2,RP11-573J24.1,ADAM5,RN7SKP135,RP11-32K4.1,RP11-579E24.2,RP11-579E24.1,COX6CP8,LINC00966,MIR124-2,RP11-21C4.4,RP11-21C4.5,RP11-235P11.1,PPM1AP1,ADAM3A,RP11-77B22.1,RP11-77B22.2,RP11-447G11.1,MRPL49P2,RP11-13N12.2,RP11-13N12.1,RN7SL474P,RP11-468H14.2,RP11-468H14.1,RP11-242F4.2,ADAM24P,MIR548V,RP11-326L2.1,RNA5SP256,RP11-156K13.1,RP11-806O11.1,RP11-156K13.2,RP11-156K13.3,CTD-2547L16.1,CTD-2547L16.3,CTD-2547L16.2,NATP,RP11-685B14.1,RP11-685B14.3,RP11-161I2.1,RP11-122L4.1,RPL35P6,AC090420.1,AC123767.1,SNORA62,RP11-420B22.1,RP11-420B22.2,RP11-1080G15.1,CTD-2024D23.1,AC136365.1,KB-1582A10.1,KB-1582A10.2,RP11-44K6.3,RP11-1080G15.2,RP11-618M23.1,RP11-44K6.2,RP11-44K6.4,RP11-618M23.2,RP11-44K6.5,RP11-618M23.4,RP11-1105O14.1,AC100802.3,RP11-359E19.1,RP11-359E19.2,RP11-470M17.2,RPL30P9,RNU6-892P,LZTS1-AS1,CTA-392C11.1,RP11-563N12.2,RP11-404E12.1,U3,RP11-108E14.1,CTA-392C11.2,TMEM97P2,RP11-301G7.1,RP11-369E15.1,RP11-465K16.1,RNU6-356P,RP11-369E15.3,MIR548AO,RP11-369E15.4,RPS29P2,CTD-3080F16.3,RNU6-895P,SNORD65,RP11-369E15.2,RP11-21C4.1,RP11-421P23.1,RP11-15G16.1,KRT18P37,RP11-1D12.1,RP11-1D12.2,RP11-360L9.4,RP11-421P23.2,RP11-89A16.1,RPL31P41,RP11-678D18.1,AC021613.1,CTD-3025N20.2,RP11-24P4.1,AC009695.1,AC022716.1,CTD-3025N20.3,RP11-707M3.3,OR6R2P,CTD-2532N20.1,AC084082.3,AC091171.1,LINC00967,AC105206.1,MIR320A,RP11-346I3.4,RP11-346I3.2,CTD-2530N21.4,CTD-2036J7.1,RNU6-1324P,RNU6-336P,PTTG3P,SNHG6,RP11-382J24.2,RP11-582J16.4,RP11-582J16.3,RP11-582J16.5,CTD-3247F14.2,RP11-459E5.1,RP11-360L9.7,RP11-360L9.8,MIR486,RP11-930P14.1,RP11-87E22.2,SNORD87,RP11-409C19.2,AC109335.1,RNA5SP268,RP11-453N18.1,RP11-7F18.2,RP11-7F18.1,RP11-343B22.2,AC022861.1,RP11-396J6.1,NDUFS5P6,RP11-403D15.2,RP11-930P14.2,RP11-403D15.1,RPL31P40,RN7SL149P,RPS15AP25,AC090571.1,SNORD112,RNA5SP269,RP11-589C21.1,RP11-865I6.2,RP11-589C21.2,RP11-600K15.1,RP11-589C21.6,RNU7-102P,GS1-44D20.1,RP11-589C21.5,RP11-21C17.1,RP11-744J10.3,RP11-231D20.2,RP11-744J10.2,RN7SKP29,RP11-102F4.2,RP11-159H10.4,RP11-159H10.3,RPL5P23,RP11-1007J8.1,RP11-159H10.1,RP11-503E24.2,RN7SL675P,RNA5SP270,SDCBPP2,RP11-503E24.3,RP11-412B14.1,SUMO2P20,RNU1-101P,RP11-152C15.1,RP11-87E22.1,RN7SL303P,RP11-875O11.1,RP11-412B14.2,RN7SL806P,BTF3P12,MIR4469,RP11-875O11.2,RNU1-124P,RP11-598P20.3,RP11-875O11.3,RP11-333A23.1,Metazoa_SRP,RP11-333A23.4,RP11-1149O23.2,VN1R46P,RP11-1149O23.1,RP11-333A23.2,RP11-726G23.2,RP11-1149O23.3,RN7SL19P,RP11-326E22.1,TRAPPC2P2,RP11-1149O23.4,AC099805.1,RP11-1144P22.1,RP11-177H13.2,RP11-281N10.1,CTC-756D1.2,U8,AC104012.1,RP11-726G23.11,CTC-756D1.1,RPS20P20,CTC-756D1.3,RP11-142A23.1,RNU4-71P,RP11-656G20.1,RP11-583M2.2,RP11-175E9.1,RNA5SP271,RP11-351E7.2,RP11-351E7.1,HAUS1P3,RP11-313C15.1,RP11-359P18.2,RP11-726G23.3,AFG3L2P1,RP11-726G23.7,RP11-726G23.10,RP11-726G23.8,POTEA,RP11-1145L24.1,RP11-531A24.3,RNU6-285P,RP11-531A24.7,RP11-531A24.5,RP11-956J14.1,RP11-213G6.2,RP11-956J14.2,AC012119.1,RP11-175E9.2,RP11-434I12.5,SNORA67,RP11-434I12.2,RP11-434I12.3,RNU1-148P,RP11-203E8.1,RP11-434I12.4,RP11-624C23.1,STAU2-AS1,RP11-181D18.4,RP11-116B19.2,VENTXP6,RP11-463D19.1,RP11-99A14.1,GYG1P1,RP11-561E1.1,RPS20P21,RP11-367E12.4,RNU6-1300P,RP11-6I2.3,GS1-72M22.1,NEFL,CTD-2168K21.2,CTD-2168K21.1,RP11-429O2.1,RN7SL651P,RP11-395I14.2,RP11-219J21.1,RP11-219J21.2,RP11-299D14.2,AC090103.1,RNA5SP258,RP11-98P2.1,SDAD1P1,RP11-14I17.2,RP11-14I17.1,RP11-14I17.3,RP11-1G11.2,RNU6-104P,RP11-726G23.12,RP11-384C12.1,AC022616.1,RP11-726G23.6,COX6B1P4,RP11-613H2.1,RN7SKP41,RP11-359P18.1,MIR548H4,RP11-359P18.7,RP11-359P18.8,SNX18P27,RP11-359P18.5,CYP4F44P,RP11-359P18.6,AC134698.1,RP11-643N23.2,RP11-643N23.1,AC113134.1,HSPA8P13,ASNSP1,RP11-790L1.3,ASNSP4,RP11-613H2.2,RP11-101E19.8,AC090150.1,RP11-521M14.1,GULOP,TRIM60P15,LINC00293,MTND1P7,RNU6-656P,RP11-101E19.4,RPS3AP32,MTND6P20,RNU6-1197P,RP11-6I2.4,RP1-16A9.1,CTD-2320G14.2,MIR5681A,RP11-730G20.2,RP11-730G20.1,RP11-758M4.4,RP11-758M4.3,RP11-3N13.2,RP11-300E4.2,RP11-697M17.2,CASC9,HIGD1AP6,PKMP4,AC016194.1,RNU2-54P,RP11-706J10.2,LINC01109,LINC01111,ZFHX4-AS1,RP11-115I9.1,MRPL9P1,RP11-101E19.7,RP11-350F16.1,RP11-350F16.2,MAPK6PS4,RN7SKP32,AC026241.1,RP11-1134I14.2,C8orf86,RNU6-819P,RPL10AP2,NDUFA5P12,RP11-1134I14.4,RP11-1134I14.8,ATP6V1G1P2,RP11-1134I14.6,IGLV8OR8-1,RP11-697N18.3,RP11-697N18.4,RP11-697N18.1,RP11-697N18.2,RNU6-665P,AC103686.1,RNU6-519P,RP11-769N21.2,CTD-2210A23.1,RNU6-295P,RPL29P19,TACC1,PLEKHA2,MSR1,FGF20,MICU3,HTRA4,TM2D2,ZDHHC2,CNOT7,ADAM9,VPS37A,MTMR7,SLC7A2,ADAM32,PDGFRL,MTUS1,ADAM18,ADAM2,FGL1,PCM1,IDO1,IDO2,C8orf4,ZMAT4,ASAH1,SFRP1,GOLGA7,GINS4,NAT1,NAT2,PSD3,AGPAT6,SH2D4A,NKX6-3,CSGALNACT1,INTS10,ANK1,LPL,SLC18A1,ATP6V1B2,LZTS1,GFRA2,DOK2,XPO7,KAT6A,AP3M2,NPM2,PLAT,FGF17,DMTN,IKBKB,FAM160B2,NUDT18,HR,REEP4,POLB,LGI3,DKK4,SFTPC,VDAC3,BMP1,SLC20A2,SMIM19,CHRNB3,CHRNA6,THAP1,RNF170,HOOK3,RP11-598P20.5,FNTA,POMK,PHYHIP,POLR3D,HGSNAT,PIWIL2,SLC39A14,SPIDR,PPP3CC,SORBS3,CEBPD,PRKDC,PDLIM2,AC037459.4,C8orf58,MCM4,CCAR2,BIN3,UBE2V2,EFCAB1,EGR3,PEBP4,RHOBTB2,SNAI2,C8orf22,RP11-738G5.2,SNTG1,TNFRSF10B,PXDNL,PCMTD1,TNFRSF10C,TNFRSF10D,TNFRSF10A,CHMP7,R3HCC1,AC090186.1,LOXL2,ST18,ENTPD4,FAM150A,RB1CC1,SLC25A37,NPBWR1,OPRK1,AC051642.1,FP15737,NKX3-1,NKX2-6,STC1,ADAM28,ATP6V1H,RGS20,ADAMDEC1,ADAM7,TCEA1,NEFM,DOCK5,LYPLA1,MRPL15,SOX17,RP1,XKR4,RP11-386G21.1,RP11-386G21.2,GNRH1,KCTD9,TMEM68,CDCA2,TGS1,EBF2,LYN,PPP2R2A,RPS20,BNIP3L,MOS,PLAG1,CHCHD7,PNMA2,DPYSL2,SDR16C5,PENK,ADRA1A,IMPAD1,FAM110B,RP11-521M14.2,STMN4,UBXN2B,CYP7A1,SDCBP,TRIM35,NSMAF,PTK2B,TOX,CA8,RAB2A,CHD7,CHRNA2,EPHX2,CLVS1,CLU,ASPH,SCARA3,CCDC25,ESCO2,NKAIN3,PBK,GGH,TTPA,YTHDF3,BHLHE22,CYP7B1,ARMC1,SCARA5,NUGGC,MTFR1,ELP3,PDE7A,PNOC,DNAJC5B,ZNF395,FBXO16,TRIM55,FZD3,EXTL3,CRH,RRS1,INTS9,ADHFE1,HMBOX1,C8orf46,KIF13B,MYBL1,DUSP4,TMEM66,VCPIP1,C8orf44-SGK3,C8orf44,LEPROTL1,MBOAT4,DCTN6,SGK3,RBPMS,MCMDC2,GTF2E2,TCF24,PPP1R42,SMIM18,COPS5,GSR,PPP2CB,TEX15,PURG,CSPP1,WRN,NRG1,ARFGEF1,FUT10,CPA6,PREX2,TTI2,MAK16,RNF122,RP11-664D7.4,DUSP26,C8orf34,UNC5D,AC012215.1,SULF1,KCNU1,ZNF703,RP11-863K10.7,ERLIN2,PROSC,SLCO5A1,AC090574.1,PRDM14,GPR124,NCOA2,BRF2,RAB11FIP1,TRAM1,AC120194.1,RP11-382J12.1,GOT1L1,ADRB3,EIF4EBP1,LACTB2,ASH2L,XKR9,EYA1,STAR,LSM1,BAG4,DDHD2,RP11-1102P16.1,RP11-383H13.1,MSC,TRPA1,KCNB2,TERF1,SBSPON,RPL7,RDH10,STAU2,RP11-463D19.2,UBE2W,TCEB1,TMEM70 ENSG00000104723 chr8 15274724 15624158 1 - NA - - - - - -
Tumour_013 MantaDEL:0:44107:44266:0:0:0 DEL chr8 77685510 77685512 + chr8 85624197 85624199 - 84 PASS 5 0 12 0 - - - - - - - - - - - - - - - - 74 RP11-48D4.2,hsa-mir-3149,HIGD1AP18,AC105242.1,RP11-38H17.1,RP11-91P17.1,RNU6-1220P,RP11-594N15.2,RP11-594N15.3,RP11-578O24.2,PRKRIRP7,RP11-79H23.3,AC009941.1,RP11-1114I9.1,RP11-758H6.1,RPL3P9,RP11-27N21.3,RP11-26J3.1,RNU7-85P,RP11-26J3.3,RP11-92K15.3,RP11-92K15.1,RN7SL41P,MIR5708,RP11-941H19.1,RP11-941H19.3,RP11-941H19.2,SNORA20,RP11-775E10.1,RNU6-1213P,Y_RNA,RP11-48B3.3,RP11-48B3.4,RPSAP47,RP11-48B3.2,RNU2-71P,SLC25A51P3,RN7SL107P,CKS1BP7,RNU11-6P,RN7SL308P,HMGB1P41,RP11-172E10.1,RP11-1149M10.1,RP11-1149M10.2,RP11-363E6.1,UBE2HP1,RP11-363E6.4,RP11-363E6.3,RP11-157I4.4,RP11-257P3.3,FTH1P11,IMPA1P,NIPA2P4,RPS26P34,SLC10A5P1,RP13-923O23.6,HNRNPA1P36,RP11-354A14.1,RP11-99H20.1,HNRNPA1P4,RP11-653B10.1,RP11-731N10.1,CTD-2272D18.1,CTD-2272D18.2,RP11-296C13.1,RP11-813B8.1,RP11-51M18.1,RP11-120I21.2,TPM3P3,RP11-120I21.3,AC103816.1,RNU6-1040P,RP11-509P12.1 - NA - - - - NA - - - - - -
Tumour_013 MantaDEL:201:0:1:0:0:0 DEL chr1 2892036 2892040 + chr1 5624480 5624484 - 47 PASS 4 0 4 0 - - - - - - - - - - - - - - - - 37 ACTRT2,PRDM16,ARHGEF16,MEGF6,TPRG1L,WRAP73,TP73,CCDC27,SMIM1,LRRC47,CEP104,DFFB,C1orf174,AJAP1,LINC00982,AL008733.1,RP1-163G9.2,RP11-22L13.1,RP11-168F9.2,MIR551A,RP11-46F15.2,RP5-1092A11.5,RP5-1092A11.2,TP73-AS1,RN7SL574P,RP1-286D6.5,AL691523.1,LINC01134,RP13-614K11.1,RP13-614K11.2,RP11-374C13.1,RP5-1166F10.1,RP1-37J18.1,RP1-37J18.2,RP11-542C10.1,RP1-58B11.1,MIR4417 - NA - - - - NA - - - - - -
Tumour_013 MantaDEL:1124:0:1:0:0:0 DEL chr1 15526643 15526645 + chr1 33134778 33134780 - 62 PASS 6 0 6 0 - - - - 5' TMEM51 3' RBBP4 FUSION+ 5' of TMEM51 into 3' of RBBP4 - - FUSION+ 5' of TMEM51 into 3' of RBBP4 - - 489 RP3-467K16.2,RP3-467K16.7,RP3-467K16.4,SCARNA21,RP4-680D5.8,RP4-680D5.2,CHCHD2P6,RNU7-179P,RP4-680D5.4,RP4-680D5.9,AL121992.1,RP11-288I21.1,RP11-169K16.4,RP11-169K16.6,RP11-169K16.7,RP11-169K16.8,RP11-169K16.9,snoU13,RP1-134O19.3,RP11-5P18.1,RP11-5P18.3,TBC1D3P6,RP11-5P18.5,RP11-5P18.10,RP11-276H7.2,RP11-276H7.3,ARHGEF19-AS1,ANO7P1,MT1XP1,RP11-430L17.1,RP4-798A10.2,CROCCP3,RNU1-1,RP4-798A10.7,RP4-798A10.4,U1,RP5-875O13.6,AL355149.1,RP5-1182A14.5,CROCCP2,MST1P2,RNU1-3,AL021920.1,EIF1AXP1,ESPNP,RNU1-4,CROCCP4,MST1L,RP11-108M9.1,RP11-108M9.2,MIR3675,USP48,RP11-108M9.4,RP11-108M9.5,RNU1-2,RP11-108M9.6,RP1-37C10.3,Y_RNA,RP11-380J14.1,MIR3972,PADI6,RP1-20B21.4,AC004824.1,RP11-473A10.2,RP11-174G17.2,RP11-174G17,RP11-422P22.1,RP1-8B22.1,RP1-8B22.2,MIR4695,MIR1290,RP5-1126H10.2,AL137127.1,RP1-43E13.2,RP4-657E11.10,RNU6-1099P,RN7SL85P,RN7SL277P,RNU4-28P,RP5-1056L3.1,RPS14P3,RP11-91K11.2,RN7SL304P,RP3-340N1.2,UBXN10-AS1,RP3-340N1.6,RP4-745E8.2,LINC01141,RP4-749H3.2,RPS4XP4,PINK1-AS,AL391357.1,RP5-930J4.5,RP5-930J4.2,RP5-930J4.4,RNU7-200P,MIR1256,RPS15AP6,RP11-487E1.2,HSPE1P27,AL031005.1,RP3-329E20.2,RP5-1071N3.1,PPP1R11P1,RP11-293F5.8,RP11-293F5.1,NBPF2P,HS6ST1P1,CROCCP5,PFN1P10,RP11-63N8.3,AL359815.1,RP11-132G19.3,RP11-26H16.1,RN7SL421P,RN7SL386P,RNU6-1022P,RN7SL768P,RN7SL186P,RNU6-776P,RP1-224A6.3,LINC00339,CDC42-IT1,RP1-224A6.8,RP1-224A6.9,MIR4418,RP11-415K20.1,ZBTB40-IT1,MIR4684,AL611946.1,RP11-69E9.1,MIR4253,RP1-74M1.3,RP1-184J9.2,MIR3115,MIR4419A,RP5-979D14.1,RNU6-514P,RNU6-135P,RP5-1057J7.1,RP5-1057J7.6,RP5-1057J7.7,RP4-654C18.1,RP1-150O5.3,RP11-223J15.2,RP5-886K2.1,RN7SL532P,RP5-886K2.3,RN7SL24P,RP11-4M23.2,RP11-4M23.3,MIR378F,RP11-4M23.4,RP11-4M23.7,RP11-293P20.2,RP11-293P20.4,RP11-10N16.2,AL590683.1,AL590683.2,RP11-10N16.3,RN7SL857P,RP4-594I10.3,RP11-496D1.2,RNU6-1208P,RP11-84D1.1,RP11-84D1.2,MIR4425,RP4-799D16.1,RP4-781L3.1,RP4-706G24.1,RP3-465N24.6,RP3-465N24.5,SDHDP6,RP11-335G20.7,RNU6-1171P,RP3-469D22.1,AL031284.1,RP11-70P17.1,RP1-187B23.1,RP1-317E23.3,RP1-317E23.7,RP1-125I3.2,SNRPFP2,RP1-125I3.4,MIR3917,AL033528.1,RNU6-110P,SCARNA17,SCARNA18,AL391650.1,RP11-96L14.7,RP11-231P20.2,RP11-231P20.5,RP11-569G9.7,RN7SL490P,RP3-476K8.4,RP3-476K8.3,DPPA2P2,MIR1976,RN7SL679P,RP11-492M19.3,RP4-785J1.1,RP5-968P14.2,RN7SL501P,RN7SL165P,RP1-50O24.6,RP11-344H11.4,RP11-344H11.5,OSTCP2,RP11-40H20.5,CHCHD3P3,NPM1P39,SNRPEP7,RP11-40H20.4,RP11-4K3__A.3,RNU6-48P,RP11-4K3__A.5,RP1-144C9.2,RP4-752I6.1,RP1-159A19.4,RP1-159A19.3,RP11-288L9.1,RP11-288L9.4,RNU6-949P,CHMP1AP1,RNU6-424P,RP3-426I6.2,RPEP3,RP3-426I6.5,RP3-426I6.6,RNU6-1245P,SCARNA1,RP11-460I13.2,RP11-460I13.6,RN7SL559P,SPCS2P4,RP5-1053E7.2,RP5-1053E7.3,RNU6-176P,RNU7-29P,RP5-1092A3.4,RP5-1092A3.5,RP1-308E4.1,RNU6ATAC27P,SNHG3,LDLRAD2,SNORA73B,PRDX3P2,SNHG12,SNORD99,RP11-442N24__B.1,RNU11,SCARNA24,RP1-212P9.2,RP1-212P9.3,HSPG2,RP4-604A21.1,RP11-242O24.3,RP11-242O24.5,RP11-467D18.2,AL645859.1,RP3-437I16.1,AL139151.1,RP11-810H18.1,AC092265.1,RP4-656G21.1,AL645944.1,RP11-179G8.1,RP11-111I12.1,RP5-893G23.1,RP3-357I16.1,RP4-591L5.1,RP4-591L5.2,MATN1-AS1,MIR4420,RP5-1125N11.1,RP1-65J11.1,RN7SKP91,RP1-65J11.5,SNORD103A,SNORD103B,SNORD85,RP11-201O14.1,RP11-201O14.2,SEPW1P,RP11-490K7.1,RP11-490K7.4,RP11-266K22.2,RP11-439L8.2,RNU6-40P,RP11-439L8.3,RP11-439L8.4,RP11-73M7.1,RP11-73M7.6,RP11-73M7.9,MIR4254,RP11-84A19.3,RP11-84A19.2,RP11-84A19.4,RP4-534N18.2,RP11-277A4.4,MIR5585,RP4-622L5.2,RP4-622L5.7,MTMR9LP,RP4-811H24.9,GAPDHP20,RP11-395N6.4,LRRC37A12P,RN7SL122P,CELA3B,CELA3A,CDC42,WNT4,ZBTB40,EPHA8,C1QA,C1QC,C1QB,EPHB2,LACTBL1,C1orf234,KDM1A,LUZP1,HTR1D,HNRNPR,ZNF436,C1orf213,TCEA3,ASAP3,E2F2,ID3,MDS2,RPL11,TCEB3,PITHD1,LYPLA2,GALE,HMGCL,FUCA1,CNR2,PNRC2,SRSF10,MYOM3,IL22RA1,IFNLR1,GRHL3,STPG1,NIPAL3,RCAN3,NCMAP,SRRM1,CLIC4,RUNX3,SYF2,C1orf63,RHD,TMEM50A,RHCE,TMEM57,LDLRAP1,MAN1C1,SEPN1,RP1-317E23.6,MTFR1L,AL020996.1,AUNIP,PAQR7,STMN1,PAFAH2,EXTL1,SLC30A2,TRIM63,PDIK1L,FAM110D,ZNF593,CNKSR1,CATSPER4,CEP85,SH3BGRL3,UBXN11,CD52,AIM1L,ZNF683,LIN28A,DHDDS,HMGN2,RPS6KA1,ARID1A,PIGV,ZDHHC18,SFN,GPN2,GPATCH3,NUDC,NR0B2,C1orf172,TRNP1,FAM46B,SLC9A1,WDTC1,TMEM222,SYTL1,MAP3K6,FCN3,CD164L2,GPR3,WASF2,AHDC1,FGR,IFI6,FAM76A,STX12,PPP1R8,AL109927.1,THEMIS2,RPA2,SMPDL3B,XKR8,EYA3,PTAFR,DNAJC8,AL353354.1,AL353354.2,ATPIF1,SESN2,MED18,PHACTR4,RCC1,TRNAU1AP,TAF12,RAB42,GMEB1,YTHDF2,OPRD1,EPB41,TMEM200B,SRSF4,MECR,PTPRU,MATN1,LAPTM5,SDC3,PUM1,NKAIN1,SNRNP40,ZCCHC17,FABP3,SERINC2,AC114494.1,TINAGL1,HCRTR1,PEF1,COL16A1,BAI2,SPOCD1,PTP4A2,AL136115.1,KHDRBS1,TMEM39B,KPNA6,TXLNA,CCDC28B,IQCC,DCDC2B,TMEM234,EIF3I,FAM167B,LCK,HDAC1,MARCKSL1,TSSK3,FAM229A,BSDC1,RP1-27O5.3,ZBTB8B,ZBTB8A,ZBTB8OS,FHAD1,EFHD2,CTRC,CELA2A,CELA2B,CASP9,DNAJC16,AGMAT,DDI2,RSC1A1,PLEKHM2 ENSG00000171729 chr1 15479028 15546976 1 ENSG00000162521 chr1 33116743 33151812 1 - - -
Tumour_013 MantaDEL:2199:0:1:0:0:0 DEL chr1 28607234 28607239 + chr1 32754532 32754537 - 59 PASS 6 0 7 0 - - - - 5' SESN2 - - - - - - - - - - 106 Y_RNA,RP1-308E4.1,RNU6ATAC27P,SNHG3,SNORA73B,snoU13,PRDX3P2,SNHG12,SNORD99,RP11-442N24__B.1,RNU11,SCARNA24,RP1-212P9.2,RP1-212P9.3,RP4-604A21.1,RP11-242O24.3,RP11-242O24.5,RP11-467D18.2,AL645859.1,RP3-437I16.1,AL139151.1,RP11-810H18.1,AC092265.1,RP4-656G21.1,AL645944.1,RP11-179G8.1,RP11-111I12.1,RP5-893G23.1,RP3-357I16.1,RP4-591L5.1,RP4-591L5.2,MATN1-AS1,MIR4420,RP5-1125N11.1,RP1-65J11.1,RN7SKP91,RP1-65J11.5,SNORD103A,SNORD103B,SNORD85,RP11-201O14.1,RP11-201O14.2,SEPW1P,RP11-490K7.1,RP11-490K7.4,RP11-266K22.2,RP11-439L8.2,RNU6-40P,RP11-439L8.3,RP11-439L8.4,RP11-73M7.1,RP11-73M7.6,RP11-73M7.9,MIR4254,RP11-84A19.3,RP11-84A19.2,RP11-84A19.4,RP4-534N18.2,RP11-277A4.4,MIR5585,RP4-622L5.2,RP4-622L5.7,MTMR9LP,MED18,PHACTR4,RCC1,TRNAU1AP,TAF12,RAB42,GMEB1,YTHDF2,OPRD1,EPB41,TMEM200B,SRSF4,MECR,PTPRU,MATN1,LAPTM5,SDC3,PUM1,NKAIN1,SNRNP40,ZCCHC17,FABP3,SERINC2,AC114494.1,TINAGL1,HCRTR1,PEF1,COL16A1,BAI2,SPOCD1,PTP4A2,AL136115.1,KHDRBS1,TMEM39B,KPNA6,TXLNA,CCDC28B,IQCC,DCDC2B,TMEM234,EIF3I,FAM167B,LCK ENSG00000130766 chr1 28586038 28609002 1 - NA - - - - - -
Tumour_013 MantaDEL:10871:6:6:1:0:0 DEL chr6 143465738 143465739 + chr6 143466189 143466190 - 53 PASS 3 0 13 0 - - - - 5' AIG1 3' AIG1 INTERNL 0 EXONS DELETED - 1 INTERNL 0 EXONS DELETED - - 0 - ENSG00000146416 chr6 143381633 143661441 1 ENSG00000146416 chr6 143381633 143661441 1 - - -
Tumour_013 MantaDEL:11320:0:1:0:0:0 DEL chr1 187124756 187124759 + chr1 187127157 187127160 - 128 PASS 19 0 15 0 - - - - 5' LINC01036 3' LINC01036 INTERNL 0 EXONS DELETED - - INTERNL 0 EXONS DELETED - - 0 - ENSG00000236030 chr1 187061974 187329455 1 ENSG00000236030 chr1 187061974 187329455 1 - - -
Tumour_013 MantaDEL:15835:0:1:0:0:0 DEL chr1 246013974 246013978 + chr1 246021928 246021932 - 151 PASS 22 0 16 0 - - - - 3' SMYD3 5' SMYD3 INTERNL 4 EXONS DELETED - - INTERNL 4 EXONS DELETED - 6 0 - ENSG00000185420 chr1 245912642 246670614 -1 ENSG00000185420 chr1 245912642 246670614 -1 - - -
Tumour_013 MantaDEL:21537:0:1:0:0:0 DEL chr2 72527239 72527240 + chr2 72603483 72603484 - 62 PASS 7 0 10 0 - - - - 3' EXOC6B 5' EXOC6B INTERNL 3 EXONS DELETED - - INTERNL 3 EXONS DELETED - 4 0 - ENSG00000144036 chr2 72403113 73053170 -1 ENSG00000144036 chr2 72403113 73053170 -1 - - -
Tumour_013 MantaDEL:23118:0:1:0:0:0 DEL chr2 104131025 104131026 + chr2 105184545 105184546 - 84 PASS 13 0 4 0 - - - - - - - - - - - - - - - - 12 AC018880.1,AC018880.2,AC013727.1,AC013727.2,RP11-76I14.1,AC096554.1,AHCYP3,AC068535.2,AC068535.3,LINC01102,LINC01103,U3 - NA - - - - NA - - - - - -
Tumour_013 MantaDEL:23835:0:1:0:0:0 DEL chr2 115551596 115551600 + chr2 115650317 115650321 - 87 PASS 12 0 10 0 - - - - 5' DPP10 3' DPP10 INTERNL 0 EXONS DELETED - - INTERNL 0 EXONS DELETED - - 2 DPP10-AS3,DPP10-AS2 ENSG00000175497 chr2 115199876 116603328 1 ENSG00000175497 chr2 115199876 116603328 1 - - -
Tumour_013 MantaDEL:37019:0:1:0:0:0 DEL chr3 60386448 60386453 + chr3 60391618 60391623 - 62 PASS 12 0 4 0 - - FHIT FHIT - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaDEL:37027:0:1:0:0:0 DEL chr3 60454965 60454968 + chr3 60587591 60587594 - 54 PASS 4 0 3 0 - - FHIT FHIT - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaDEL:39084:0:1:0:0:0 DEL chr3 90282978 90282980 + chr3 90325109 90325111 - 58 PASS 4 0 5 0 - - - - 3' PROSP - - - - - - - - - - 1 HSPE1P19 ENSG00000189002 chr3 90251466 90306565 -1 - NA - - - - - -
Tumour_013 MantaDEL:39694:0:1:0:0:0 DEL chr3 102925632 102925636 + chr3 102984336 102984340 - 68 PASS 8 0 7 0 - - - - - - - - - - - - - - - - 1 NDUFA4P2 - NA - - - - NA - - - - - -
Tumour_013 MantaDEL:43950:0:1:0:0:0 DEL chr3 165101019 165101025 + chr3 165101219 165101220 - 49 PASS 9 1 8 0 - - - - 5' RP11-85M11.2 3' RP11-85M11.2 INTERNL 0 EXONS DELETED - - INTERNL 0 EXONS DELETED - - 0 - ENSG00000244128 chr3 164924748 165373211 1 ENSG00000244128 chr3 164924748 165373211 1 - - -
Tumour_013 MantaDEL:55847:0:0:1:0:0 DEL chr4 137594455 137594458 + chr4 137594862 137594863 - 81 PASS 11 0 10 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaDEL:56195:0:1:0:0:0 DEL chr4 142479560 142479562 + chr4 142503343 142503345 - 87 PASS 11 0 8 0 - - - - - - - - - - - - - - - - 1 RP11-208N20.1 - NA - - - - NA - - - - - -
Tumour_013 MantaDEL:60946:0:1:0:0:0 DEL chr5 11166666 11166667 + chr5 43842249 43842250 - 61 PASS 9 0 5 0 - - - - 3' CTNND2 - - - - - - - - - - 415 RP11-152K4.1,Y_RNA,RNU6-363P,RP11-5N11.2,RP11-5N11.1,RP11-5N11.3,RP11-5N11.4,RP11-5N11.5,RP11-5N11.6,RP11-5N11.7,RNU6-358P,CTD-2290C23.1,snoU13,RNU6-760P,CTD-2290C23.2,RPL5P14,AC025458.1,TPT1P5,CTD-2206G10.2,MIR4279,CTD-2152M20.2,CTD-2186M15.3,CTD-2186M15.1,RNU6-1079P,RNU6-378P,AC008949.1,MIR579,CTD-2290P7.1,CTD-2004A9.1,AC026703.2,CTD-2218G20.1,CTD-2066L21.3,CTD-2218G20.2,CTD-2066L21.1,CTD-2066L21.2,CTD-2017D15.1,RP11-36C20.1,RP11-113I22.1,CTD-2203K17.1,CTD-2233C11.3,CTD-2233C11.2,RNU6-923P,RP11-1084J3.1,RP11-1084J3.3,RP11-1250I15.3,RP11-1023L17.1,RP11-1023L17.2,RP11-1325J9.1,CTD-2024P10.2,CTD-2024P10.1,CTD-2517O10.6,CTD-2517O10.5,RPL21P54,AC010368.1,CTD-2046J7.1,U3,RNU7-130P,CTD-2113L7.1,RP11-79C6.1,RP11-79C6.3,CTD-2197M16.1,MIR580,RNU6-1305P,NADK2-AS1,RNA5SP181,CTD-2282P23.1,CTD-2353F22.1,CTD-2653M23.3,KRT18P31,RPS4XP6,CTD-2284O10.3,OFD1P17,RN7SL37P,CTD-2124B8.2,RNU7-75P,RP11-648M2.1,RP11-648M2.2,RNU6-1190P,RNU6-484P,AC008869.1,GDNF-AS1,CTD-2194L12.2,CTD-2194L12.3,CTD-2130F23.2,CTD-2130F23.1,CTD-2116N24.1,AC074129.1,CTD-2207A17.1,EGFLAM-AS4,EGFLAM-AS3,EGFLAM-AS2,EGFLAM-AS1,CTD-2108O9.4,CTD-2263F21.1,LIFR-AS1,NUP155,MIR3650,CTD-2196P11.2,RP11-122C5.1,CTD-2127H9.1,RP11-122C5.2,RP11-122C5.3,AIG1P1,GOLGA5P1,CTD-2078B5.2,CCDC11P1,INTS6P1,GCSHP1,LINC00603,KRT18P56,LINC00604,RNU1-150P,AC108105.1,SNORA63,SNORA57,SNORD72,RNU7-161P,RP11-301A5.2,CTD-2122P11.1,OXCT1-AS1,CTD-2062O1.1,CTD-2156G10.1,MTHFD2P6,RP11-112L7.1,SERBP1P6,CTD-2265D6.2,RP11-116B13.1,CTD-2325A15.5,CTD-2325A15.3,CTD-2325A15.2,CTD-2201E18.4,CTD-2201E18.2,ADAMTS12,CTD-2201E18.1,CTD-2201E18.5,CTD-2201E18.3,CTD-2035E11.3,CTD-2035E11.4,AC025171.1,CTD-2035E11.5,RP11-447H19.3,RP11-447H19.2,AC010368.2,SPEF2,BASP1,CDH18,RP11-447H19.1,CTD-2636A23.2,RP11-159F24.2,RP11-159F24.3,EEF1A1P19,RP11-159F24.6,RP11-159F24.5,NNT-AS1,CTD-2210P15.2,RPL29P12,RXFP3,CDH12,WDR70,SLC45A2,GDNF,AMACR,PRDM9,EGFLAM,C5orf17,RP11-1084J3.4,C1QTNF3,CDH10,IL7R,LIFR,CDH9,CDH6,CAPSL,RAI14,UGT3A1,DROSHA,UGT3A2,LMBRD2,OSMR,DNAH5,SKP2,RICTOR,RNU6-679P,RP11-308B16.2,CT49,AC106771.1,RP11-419C19.3,RP11-419C19.1,TTC23L,RP11-419C19.2,AC016553.1,CTC-305H11.1,RPS23P5,CTD-2042D5.1,CTC-232H10.1,CTB-51A17.1,CTD-2165H16.3,CCT6P2,EEF1A1P13,CTD-2165H16.4,RBBP4P1,MIR4637,CTB-40H15.4,UQCRBP3,HNRNPKP5,AC016575.1,SEPHS2P1,U8,RP1-251I12.1,RP1-137K24.1,MARK2P5,CTD-2313D3.1,NADK2,CTD-2350J17.1,MIR887,RNA5SP178,RP11-19O2.1,RP11-19O2.2,NACAP6,RP1-167G20.1,RP1-167G20.2,RP11-260E18.1,CTC-461F20.1,RNA5SP179,CTB-55B8.1,RNU6-660P,CTD-2228A4.1,RAD1,AC091878.1,RNA5SP180,DCAF13P2,RNU6-1003P,CTD-2139B15.1,TRIO,RN7SKP133,FTH1P10,FYB,CTD-2139B15.2,CTD-2139B15.5,CTD-2139B15.4,RP11-321E2.3,RP11-321E2.4,RP11-321E2.5,RP11-321E2.13,RP11-321E2.12,RP11-321E2.6,RP11-321E2.11,RP11-321E2.10,RP11-321E2.2,RP11-321E2.7,RP11-321E2.8,RP11-321E2.9,RP11-432M8.2,RP11-432M8.1,RP11-432M8.3,RP11-432M8.4,RP11-432M8.5,RP11-432M8.7,RP11-432M8.6,RP11-432M8.8,RP11-432M8.9,RP11-432M8.20,RP11-432M8.10,RP11-432M8.11,RP11-432M8.12,RP11-432M8.13,C5orf22,RP11-432M8.15,RP11-432M8.14,RP11-432M8.16,RP11-432M8.18,RP11-432M8.17,BRIX1,RP11-432M8.19,RP11-454P21.1,RPL36AP21,SNORD81,RN7SL58P,CTD-2023M8.1,UBE2V1P12,CTD-2151L9.2,RP11-81B23.1,RP11-124N3.3,RP11-124N3.2,RPL32P14,HSPD1P15,AC118463.1,RP11-61K20.1,RP11-420O16.2,RP11-420O16.1,RANBP3L,RP11-774D14.1,CTD-2333M24.1,RP11-697E23.1,RP11-811J10.1,RP11-374A4.1,GUSBP1,RP11-823P9.3,AC138951.1,RP11-360I2.1,RP11-804N13.1,AC140132.1,HSPD1P1,RP11-855C21.1,PMCHL1,GCNT1P2,CTD-2234B20.1,RN7SL572P,CTD-2272G21.3,CTD-2272G21.2,CTD-2272G21.1,PDZD2,CTD-2351A8.1,RP11-197O8.1,SNORA40,CTD-2138O14.1,CTD-2015B23.2,CTD-2074D8.1,RP11-116O11.1,RP11-116O11.2,RP11-12P19.2,RP11-12P19.1,SNORD29,RP11-730N24.1,DNAJC21,RP11-730N24.2,RP11-549K20.1,RP11-184E9.1,RP11-192H6.2,RP11-184E9.2,CTD-2306M5.1,RNU6-374P,MSNP1,RNU4-43P,RP11-351N6.1,CTD-2533K21.3,CTD-2533K21.2,CTD-2533K21.1,CTD-2533K21.4,CTD-2194F12.1,RNU6-738P,CTD-3007L5.1,SLC1A3,LINC01021,AC010455.1,RP11-560A7.1,CTD-2061E9.1,RNU6-909P,CTD-2134P3.1,CTD-2134P3.2,CTD-2269E23.3,LSP1P3,CTD-2269E23.2,SUCLG2P4,AC008964.1,SNORA18,RP11-42L13.2,RP11-42L13.3,C9,CTD-2118P12.1,CTD-2010I22.2,UBL5P1,CTD-2011G17.1,CTD-2057J6.2,CTD-2057J6.1,RN7SKP207,RP11-136H13.1,RP11-136H13.2,RPL19P11,CTD-2127O16.2,RP11-152K4.2,DAB2,AGXT2,GOLPH3,NIPBL,MTMR12,PRLR,PTGER4,TTC33,PRKAA1,FAM105A,FAM105B,ANKH,C5orf42,RPL37,ZFR,CARD6,C7,FBXL7,11-Mar,MROH2B,ZNF622,FAM134B,MYO10,SUB1,NPR3,C6,AC026703.1,TARS,PLCXD3,OXCT1,C5orf51,FBXO4,GHR,CCDC152,SEPP1,ANXA2R,ZNF131,NIM1K,HMGCS1,CCL28,C5orf28,C5orf34,PAIP1,NNT ENSG00000169862 chr5 10971952 11904155 -1 - NA - - - - - -
Tumour_013 MantaDEL:61442:0:1:0:0:0 DEL chr5 17625424 17625428 + chr5 17827291 17827295 - 77 PASS 11 0 10 0 - - CDH18 CDH18 - - 3' RP11-454P21.1 - - - - - - - - 9 RP11-432M8.11,RP11-432M8.12,RP11-432M8.13,RP11-432M8.15,RP11-432M8.14,RP11-432M8.16,RP11-432M8.18,RP11-432M8.17,RP11-432M8.19 - NA - - - ENSG00000249937 chr5 17684693 17955966 1 - - -
Tumour_013 MantaDEL:66040:0:1:0:0:0 DEL chr5 86487299 86487303 + chr5 87400271 87400275 - 70 PASS 9 0 4 0 - - - - - - - - - - - - - - - - 9 RN7SL629P,RNU6-606P,CTC-428H11.2,RNU6-727P,CTD-2316B1.1,CTD-2316B1.2,AC008394.1,RASA1,CCNH - NA - - - - NA - - - - - -
Tumour_013 MantaDEL:75866:0:1:0:0:0 DEL chr6 45820943 45820947 + chr6 45821510 45821511 - 46 PASS 4 0 7 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaDEL:76086:0:1:0:0:0 DEL chr6 48828534 48828538 + chr6 48846102 48846106 - 81 PASS 13 0 7 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaDEL:80863:0:1:0:0:0 DEL chr6 121779612 121779613 + chr6 122222105 122222106 - 67 PASS 9 0 5 0 - - - - - - - - - - - - - - - - 8 RP1-172I22.1,RNU4-76P,RNU2-8P,RP11-129H15.1,SLC25A5P7,RP11-129H15.3,RP11-129H15.4,HMGB3P18 - NA - - - - NA - - - - - -
Tumour_013 MantaDEL:81258:0:1:0:0:0 DEL chr6 128357827 128357829 + chr6 128581184 128581186 - 79 PASS 7 0 8 0 - - - - 3' PTPRK 5' PTPRK INTERNL 20 EXONS DELETED - - INTERNL 20 EXONS DELETED - 4 0 - ENSG00000152894 chr6 128289924 128841870 -1 ENSG00000152894 chr6 128289924 128841870 -1 - - -
Tumour_013 MantaDEL:81258:0:1:0:0:0 DEL chr6 128357827 128357829 + chr6 128581184 128581186 - 79 PASS 7 0 8 0 - - - - 5' RP11-103C16.2 5' PTPRK - - - - - - - 4 0 - ENSG00000227945 chr6 128349031 128406393 1 ENSG00000152894 chr6 128289924 128841870 -1 - - -
Tumour_013 MantaDEL:83180:0:1:0:0:0 DEL chr6 157153872 157153873 + chr6 157507152 157507153 - 140 PASS 25 0 18 0 - - - - 5' ARID1B 3' ARID1B INTERNL 24 EXONS DELETED - - INTERNL 24 EXONS DELETED - - 2 RP11-2J18.1,RP1-137K2.2 ENSG00000049618 chr6 157099063 157531913 1 ENSG00000049618 chr6 157099063 157531913 1 - - -
Tumour_013 MantaDEL:88127:0:1:0:0:0 DEL chr7 49553416 49553419 + chr7 49602108 49602111 - 48 PASS 5 0 4 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaDEL:92587:0:1:0:0:0 DEL chr7 110052996 110052998 + chr7 110091448 110091450 - 60 PASS 10 0 3 0 - - IMMP2L IMMP2L - - 5' AC003088.1 - - - - - - - - 0 - - NA - - - ENSG00000226965 chr7 110072296 110174811 -1 - - -
Tumour_013 MantaDEL:94187:0:1:0:0:0 DEL chr7 131474125 131474126 + chr7 151993889 151993890 - 72 PASS 8 0 10 0 - - EXOC4 - - - 5' KMT2C - - - - - - - 2 457 CCT4P1,RP4-813F11.4,RNU4-74P,RP5-1173P7.1,RP5-914M6.1,RP5-842K16.1,RP5-842K16.2,RP11-744I24.3,RP11-744I24.2,RP5-894A10.2,KDM7A,OR9A2,OR6V1,PIP,TAS2R39,LRRC61,ZBED6CL,RP5-894A10.6,RARRES2,WEE2-AS1,RNU1-82P,TAS2R6,RP5-1154E9.7,MTND2P5,TAS2R40,AC073342.1,MTND1P3,MYL6P4,AC073647.1,OR9A3P,OR9A1P,GSTK1,OR9N1P,MOXD2P,REPIN1,SLC37A3,U66059.29,U66059.58,PRSS3P3,TRBV1,TRBV7-5,TRBV12-2,TRBV11-2,TRBV12-1,TRBV8-2,TRBV5-2,TRBV8-1,TRBV21-1,TRBV22-1,TRBVA,ZNF775,TRBV26,TRBVB,PGBD4P1,PRSS3P1,TMEM139,GIMAP8,AGBL3,GIMAP7,PRSS3P2,WBP1LP1,RP11-114L10.2,OR9P1P,OR6W1P,AC073342.12,RN7SL535P,RN7SL481P,HINT1P1,CASP2,C7orf49,GIMAP4,GIMAP6,GIMAP2,GIMAP1,GIMAP5,RP11-563K23.1,AC093673.5,EPHA1-AS1,TAS2R62P,OR2R1P,AC073264.10,PAICSP5,TMEM176B,TMEM140,AC083862.1,WDR91,CLCN1,CTAGE15,RNU6-162P,AC073264.6,RAB19,MKRN1,FAM115B,RNU6-267P,RP11-61L23.2,TMEM176A,PAICSP6,RP11-307I2.1,FAM115D,RP4-669B10.3,RP4-669B10.6,OR2Q1P,SLC16A1P1,OR2A41P,OR2A15P,OR2A13P,OR2A3P,FAM131B,OR2AO1P,AC004889.1,RP4-545C24.1,OR2A20P,DENND2A,OR2A1-AS1,AOC1,ZYX,ARHGEF34P,OR2A9P,RP4-545C24.5,RNU6ATAC40P,EEF1A1P10,RN7SKP174,EI24P4,KCNH2,AC073310.4,ADCK2,RPL7P59,AC004911.2,AC073055.2,AC006007.1,RN7SL207P,AC084872.1,AC006004.1,DUTP3,RANP2,MIR548F4,AC005518.2,STRA8,CNOT4,RP4-777G9.1,RNU6-1184P,RNA5SP249,RN7SL456P,U3,RN7SL72P,AC005229.5,AC005229.7,RP5-1136G13.1,RP5-1136G13.2,AC005229.1,RNU7-20P,RN7SL569P,RNY5,RNY4,RNY3,RNY1,RNU6-650P,COX6B1P1,RN7SL521P,RP4-800G7.1,RP4-800G7.3,RP4-800G7.2,NDUFB2,NOS3,SNORD112,AC004941.5,NPM1P12,AC004941.3,EPHA1,RP11-143I21.1,NUP205,ZNF767,BRAF,TAS2R60,TAS2R41,OR10AC1P,SSPO,FAM115C,MRPS33,TMEM178B,AGK,CTAGE6,FAM115A,C7orf73,SLC13A4,FAM180A,OR2F2,OR2F1,OR6B1,MTPN,AC015987.2,LUZP6,CHRM2,KIAA1147,RP4-751H13.7,ATP6V0E2-AS1,RP11-445N20.3,RP11-728K20.3,OR2A5,OR2A25,OR2A12,OR2A2,OR2A14,CTAGE4,ARHGEF35,OR2A42,OR2A7,CTAGE8,PTN,OR2A1,ARHGEF5,ABCB8,DGKI,RP11-728K20.1,RP11-728K20.2,WEE2,SSBP1,RP11-545G3.1,RP4-584D14.7,RP4-584D14.5,RP4-584D14.6,LINC00996,RP11-511P7.4,STRADBP1,ALDH7A1P3,RP11-632K21.7,RP11-632K21.3,RP11-632K21.6,RP5-1051J4.6,NOBOX,RP5-1051J4.4,TAS2R3,TAS2R4,TAS2R5,ATG9B,PRSS37,TPK1,MGAM,CREB3L2,CNTNAP2,AKR1D1,OR9A4,CLEC5A,TAS2R38,RP11-1220K2.2,ASIC3,TRIM24,RP11-148K1.10,PRSS58,RP11-148K1.12,IQCA1P1,MIR671,RP4-548D19.3,RP5-1070G24.2,WDR86-AS1,RP4-555L14.4,MIR3907,RN7SL76P,ETF1P2,RP13-452N2.1,PRKAG2-AS1,RNU6-604P,Y_RNA,RP11-796I2.1,snoU13,RP5-981O7.2,YBX1P4,C7orf33,SVOPL,CUL1,CDK5,TRBV2,ATP6V0A4,TRBV3-1,TRBV4-1,TRBV5-1,TRBV6-1,TRBV7-1,TRBV4-2,TRBV7-8,TRBV6-9,TRBV5-7,TRBV7-7,TRBV6-8,TRBV5-6,TRBV7-6,TRBV6-7,TRBV5-5,TRBV6-6,TRBV5-4,TRBV7-4,TRBV6-5,TRBV10-2,TRBV11-1,TRBV10-1,TRBV9,TRBV5-3,TRBV7-3,TRBV6-4,TRBV19,TRBV20-1,TRBV23-1,EZH2,TRBV24-1,MTRNR2L6,TRBV25-1,TMEM213,TRBV27,TRBV28,TRBV29-1,PRSS1,KIAA1549,TRBJ2-1,TRBJ2-2,TRBJ2-2P,TRBJ2-3,TRBJ2-4,TRBJ2-5,TRBJ2-6,TRBJ2-7,TRBC2,TRBV30,SLC4A2,EPHB6,PDIA4,ZNF786,ZNF425,TRPV6,ZC3HAV1L,ZNF398,ZC3HAV1,ZNF282,TRPV5,ZNF212,TTC26,C7orf34,FASTK,ZNF783,ZNF777,ZNF746,KEL,TMUB1,AGAP3,KRBA1,ZNF467,ZNF862,ATP6V0E2,UBN2,C7orf55,C7orf55-LUC7L2,GBX1,ASB10,ACTR3C,ABCF2,LUC7L2,KLRG2,CLEC2L,HIPK2,TBXAS1,AC008085.1,AC009518.2,AC009518.3,AC009518.4,snosnR60_Z15,AC105443.2,AC018643.4,AC011625.1,SNORD46,AC009365.4,AC009518.8,U6,AC083873.4,AC083875.1,AC083875.2,COX5BP3,AC007790.4,AC008154.4,AC008154.5,RP11-38M8.1,AC009276.4,TUBB3P2,AC083862.6,RP11-134L10.1,AC009542.2,SDHDP2,RP11-751K21.1,AC093107.7,RNU6-1154P,RP11-644N4.1,AC091736.1,AC015987.1,RNU6-223P,AC024084.1,AC009784.3,AC009784.1,AC009784.4,CHPF2,AC009541.1,hsa-mir-490,SMARCD3,PSMC1P3,MIR490,KRT8P51,AC009517.2,PARP12,SNORD81,AC078842.4,AC078842.3,AC009245.3,AC022173.2,AC009263.2,AC024082.3,AC024082.4,AC024082.1,RN7SKP223,RCC2P3,MIR4468,AC083867.4,NUB1,SNORA51,AC008155.2,AC008155.1,AC008265.2,AC013429.5,SNORA40,AC013429.4,AC020983.5,UQCRFS1P2,RNU6-1272P,RP11-383F6.1,RP11-365F18.3,RP11-365F18.6,RP11-365F18.1,RP11-365F18.5,RNU6-206P,RP11-634H22.1,RNU6-911P,RP4-701O16.5,ERHP1,JHDM1D-AS1,RNU6-797P,RNU1-58P,RP5-1136G2.1,PPP1R2P6,RNA5SP247,RNA5SP248,RP11-723C11.2,AC006452.1,RN7SL771P,NDUFB2-AS1,RP4-813F11.3,WDR86,CRYGN,RHEB,PRKAG2,GALNTL5,GALNT11 - NA - - - ENSG00000055609 chr7 151832010 152133090 -1 - - -
Tumour_013 MantaDEL:94808:1:3:0:0:0 DEL chr7 139864109 139864113 + chr7 140024402 140024406 - 62 PASS 5 0 9 0 - - - - 3' KDM7A 5' SLC37A3 FUSION- 5' of SLC37A3 into 3' of KDM7A - - FUSION- 5' of SLC37A3 into 3' of KDM7A - 28 5 JHDM1D-AS1,RNU6-797P,RNU1-58P,RP5-1136G2.1,PPP1R2P6 ENSG00000006459 chr7 139784546 139876835 -1 ENSG00000157800 chr7 139993493 140104233 -1 - - -
Tumour_013 MantaDEL:95667:0:1:0:0:0 DEL chr7 152021845 152021850 + chr7 154516902 154516907 - 54 PASS 6 0 3 0 - - - - 3' KMT2C 3' DPP6 - - - - - - - - 26 RP11-208G20.3,RP11-208G20.2,SEPT7P6,Y_RNA,FABP5P3,AC005631.1,CCT8L1P,LINC01003,AC104843.4,RNA5SP250,snoU13,AC104843.3,SNORA26,RN7SL811P,ATP5F1P3,RN7SL845P,AF104455.1,AC079809.2,AC073236.3,AC091652.2,AC005588.2,RP5-1048B16.1,AC006019.3,AC006019.4,XRCC2,ACTR3B ENSG00000055609 chr7 151832010 152133090 -1 ENSG00000130226 chr7 153584182 154685995 1 - - -
Tumour_013 MantaDEL:96693:1:2:0:0:0 DEL chr8 77856677 77856682 + chr8 77938105 77938110 - 55 PASS 3 0 8 0 - - - - - - - - - - - - - - - - 2 hsa-mir-3149,HIGD1AP18 - NA - - - - NA - - - - - -
Tumour_013 MantaDEL:97926:0:1:0:0:0 DEL chr8 17034287 17034291 + chr8 18605598 18605602 - 31 PASS 2 0 2 0 - - - - 5' ZDHHC2 5' PSD3 - - - - - - - 11 27 RP11-242F4.2,ADAM24P,MIR548V,RP11-326L2.1,RNA5SP256,RP11-156K13.1,RP11-806O11.1,RP11-156K13.2,RP11-156K13.3,CTD-2547L16.1,CTD-2547L16.3,CTD-2547L16.2,NATP,RP11-685B14.1,RP11-685B14.3,RP11-161I2.1,CNOT7,VPS37A,MTMR7,SLC7A2,PDGFRL,MTUS1,FGL1,PCM1,ASAH1,NAT1,NAT2 ENSG00000104219 chr8 17013538 17082308 1 ENSG00000156011 chr8 18384811 18942240 -1 - - -
Tumour_013 MantaDEL:98082:0:1:0:0:0 DEL chr8 19199020 19199023 + chr8 22445420 22445423 - 111 PASS 17 0 8 0 - - - - 5' SH2D4A 3' PDLIM2 FUSION+ 5' of SH2D4A into 3' of PDLIM2 - - FUSION+ 5' of SH2D4A into 3' of PDLIM2 - - 56 RP11-1105O14.1,AC100802.3,RPL30P9,RNU6-892P,LZTS1-AS1,RP11-563N12.2,RP11-404E12.1,U3,RP11-108E14.1,TMEM97P2,RP11-369E15.1,RP11-369E15.3,RP11-369E15.4,RP11-369E15.2,RP11-421P23.1,RP11-421P23.2,AC021613.1,RP11-24P4.1,AC009695.1,AC022716.1,OR6R2P,snoU13,AC091171.1,AC105206.1,MIR320A,CTD-2530N21.4,CTD-2036J7.1,RNU6-336P,RP11-382J24.2,RP11-582J16.4,RP11-582J16.3,CSGALNACT1,INTS10,LPL,SLC18A1,ATP6V1B2,LZTS1,GFRA2,DOK2,XPO7,NPM2,FGF17,DMTN,FAM160B2,NUDT18,HR,REEP4,LGI3,SFTPC,BMP1,PHYHIP,POLR3D,PIWIL2,SLC39A14,PPP3CC,SORBS3 ENSG00000104611 chr8 19171128 19253729 1 ENSG00000120913 chr8 22435792 22455538 1 - - -
Tumour_013 MantaDEL:99560:0:1:0:0:0 DEL chr8 40456752 40456753 + chr8 69602554 69602555 - 85 PASS 14 0 12 0 - - - - 3' ZMAT4 3' C8orf34 - - - - - - - - 405 RP11-567J20.3,RP11-770E5.1,RP11-567J20.2,AC026904.1,RP11-567J20.1,RP11-770E5.3,RP11-770E5.2,RP11-22C8.1,RP11-10H3.1,RN7SKP294,RFPL4AP7,RP11-738G5.1,PSAT1P1,RP11-109P6.2,RP11-401N18.1,RP11-759A9.1,RP11-759A9.2,CYCSP22,RP11-139G7.1,SNORA7,RP11-401H2.1,RP11-119N19.1,RP11-11C20.1,RP11-11C20.3,RP11-110G21.2,RP11-110G21.1,RP11-546K22.3,RP11-546K22.1,RP11-546K22.2,RP11-26M5.3,RP11-26M5.2,RP11-1023P17.2,RPL34P17,CTD-3214K23.1,RP11-182E14.1,AC009800.1,AC016113.1,RP11-162D9.1,RP11-162D9.3,RP11-1081M5.2,RP11-1081M5.1,RP11-400K9.3,RP11-400K9.4,RP11-400K9.1,RP11-400K9.2,RP11-463C14.1,RP11-1070A24.2,RP11-1070A24.1,RNU6-1331P,RP11-30L15.4,RP11-30L15.6,TDGF1P5,RNU6ATAC32P,RP11-626A5.2,RP11-767C6.1,RNU105C,RN7SL250P,RP11-53M11.4,RP11-53M11.2,RP11-53M11.3,RP11-56A10.1,RP11-550I15.1,SBF1P1,RP11-628E19.2,AC100817.1,RNA5SP265,RP11-318K15.2,SNORA1,AC018607.1,RN7SL798P,RP11-446E9.2,RN7SL323P,RP11-446E9.1,SNORD54,CTA-397H3.3,NPM1P21,SNORA3,RP11-140I16.3,RP11-140I16.2,SDR16C6P,RP11-17A4.2,SEPT10P1,LINC00968,RP11-17A4.3,RP11-17A4.1,RP11-17A4.4,RP11-33E15.1,RNU6-13P,AC032027.1,RNA5SP266,RP11-513O17.2,AC025674.1,RP11-513O17.1,RP11-513O17.3,LINC00588,RNU6-596P,RP11-756K15.2,RPL30P10,RP11-246K15.1,RNU7-174P,RP11-388G22.1,CTD-2339F6.1,RP11-44D19.1,RP11-1112C15.1,RP11-1112C15.2,RP11-648L3.2,RP11-648L3.1,RP11-716D16.1,RP11-114M5.1,RP11-114M5.3,AC068522.4,snoU13,RNU4-50P,RP11-328K2.1,RP11-25K19.1,SNORA51,RNA5SP267,RP11-379I19.2,RP11-379I19.1,RP11-379I19.3,RP11-960H2.2,RP11-960H2.1,RP11-27P7.1,SLC2A13P1,RP11-163N6.2,PDCL3P1,AC022555.1,RNU6-1202P,RP11-91I20.4,RP11-91I20.3,RP11-91I20.2,RP11-91I20.1,RP11-33I11.2,RP11-33I11.3,AC022182.1,AC022182.2,AC022182.3,NPM1P6,RP11-787D18.2,RP11-787D18.1,KRT8P3,RN7SKP97,MIR4470,RP11-280G9.1,RP11-705O24.1,RP11-705O24.3,RP11-705O24.2,RP11-705O24.4,CTD-2571E19.1,CTD-2571E19.3,RP11-577N1.1,RP11-577N1.2,XRCC6P4,RP11-442A17.2,RP11-659E9.2,RP11-659E9.4,RP11-16E18.1,YTHDF3-AS1,RP11-16E18.3,RN7SL135P,CTD-3046C4.1,IFITM8P,RP11-45K10.2,RP11-573J24.1,RN7SKP135,RP11-32K4.1,RP11-579E24.2,RP11-579E24.1,COX6CP8,LINC00966,MIR124-2,RP11-21C4.4,RP11-21C4.5,RP11-465K16.1,RNU6-356P,MIR548AO,RPS29P2,CTD-3080F16.3,RNU6-895P,SNORD65,RP11-21C4.1,RP11-15G16.1,KRT18P37,RP11-1D12.1,RP11-1D12.2,RP11-360L9.4,RP11-89A16.1,RPL31P41,RP11-678D18.1,CTD-3025N20.2,CTD-3025N20.3,Y_RNA,RP11-707M3.3,CTD-2532N20.1,AC084082.3,LINC00967,RP11-346I3.4,RP11-346I3.2,RNU6-1324P,PTTG3P,SNHG6,RP11-360L9.7,RP11-360L9.8,MIR486,RP11-930P14.1,SNORD87,RP11-409C19.2,AC109335.1,RNA5SP268,RP11-453N18.1,RP11-7F18.2,RP11-7F18.1,RP11-343B22.2,AC022861.1,RP11-396J6.1,NDUFS5P6,RP11-403D15.2,RP11-930P14.2,RP11-403D15.1,RPL31P40,RN7SL149P,RPS15AP25,AC090571.1,SNORD112,RP11-589C21.1,RP11-589C21.2,RP11-589C21.6,RP11-589C21.5,RP11-231D20.2,RPL5P23,RP11-1007J8.1,RP11-503E24.2,RP11-503E24.3,RP11-412B14.1,RP11-412B14.2,RN7SL806P,MIR4469,RNU1-124P,RP11-598P20.3,VN1R46P,RP11-726G23.2,RP11-726G23.11,RP11-359P18.2,RP11-726G23.3,AFG3L2P1,RP11-726G23.7,RP11-726G23.10,RP11-726G23.8,POTEA,RNU6-104P,RP11-726G23.12,AC022616.1,RP11-726G23.6,U3,RN7SKP41,RP11-359P18.1,RP11-359P18.7,RP11-359P18.8,SNX18P27,RP11-359P18.5,CYP4F44P,RP11-359P18.6,AC134698.1,RP11-643N23.2,RP11-643N23.1,AC113134.1,HSPA8P13,ASNSP1,RP11-790L1.3,ASNSP4,RP11-101E19.8,TRIM60P15,LINC00293,MTND1P7,RNU6-656P,RP11-101E19.4,MTND6P20,RP11-101E19.7,RP11-350F16.1,RP11-350F16.2,MAPK6PS4,RN7SKP32,AC026241.1,RP11-1134I14.2,RNU6-819P,RPL10AP2,NDUFA5P12,RP11-1134I14.4,RP11-1134I14.8,ATP6V1G1P2,RP11-1134I14.6,IGLV8OR8-1,RP11-697N18.3,RP11-697N18.4,RP11-697N18.1,RP11-697N18.2,RNU6-665P,AC103686.1,RNU6-519P,RP11-769N21.2,CTD-2210A23.1,RNU6-295P,RPL29P19,SFRP1,GOLGA7,GINS4,AGPAT6,NKX6-3,ANK1,KAT6A,AP3M2,PLAT,IKBKB,POLB,DKK4,VDAC3,SLC20A2,SMIM19,CHRNB3,CHRNA6,THAP1,RNF170,HOOK3,RP11-598P20.5,FNTA,POMK,HGSNAT,SPIDR,CEBPD,PRKDC,MCM4,UBE2V2,EFCAB1,SNAI2,C8orf22,RP11-738G5.2,SNTG1,PXDNL,PCMTD1,AC090186.1,ST18,FAM150A,RB1CC1,NPBWR1,OPRK1,ATP6V1H,RGS20,TCEA1,LYPLA1,MRPL15,SOX17,RP1,XKR4,RP11-386G21.1,RP11-386G21.2,TMEM68,TGS1,LYN,RPS20,MOS,PLAG1,CHCHD7,SDR16C5,PENK,IMPAD1,FAM110B,UBXN2B,CYP7A1,SDCBP,NSMAF,TOX,CA8,RAB2A,CHD7,CLVS1,ASPH,NKAIN3,GGH,TTPA,YTHDF3,BHLHE22,CYP7B1,ARMC1,MTFR1,PDE7A,DNAJC5B,TRIM55,CRH,RRS1,ADHFE1,C8orf46,MYBL1,VCPIP1,C8orf44-SGK3,C8orf44,SGK3,MCMDC2,TCF24,PPP1R42,COPS5,CSPP1,ARFGEF1,CPA6,PREX2,RP11-664D7.4 ENSG00000165061 chr8 40388109 40755352 -1 ENSG00000165084 chr8 69242957 69731257 1 - - -
Tumour_013 MantaDEL:101056:0:2:0:0:0 DEL chr8 68671289 68671743 + chr8 77864162 77864710 - 39 PASS 7 0 0 0 - - - - - - - - - - - - - - - - 122 NDUFS5P6,RP11-403D15.2,RP11-403D15.1,Y_RNA,RPL31P40,RPS15AP25,RNA5SP269,RP11-865I6.2,RP11-600K15.1,RNU7-102P,GS1-44D20.1,RP11-21C17.1,RP11-744J10.3,RP11-744J10.2,RN7SKP29,RP11-102F4.2,RP11-159H10.4,RP11-159H10.3,RP11-159H10.1,RN7SL675P,RNA5SP270,SDCBPP2,SUMO2P20,RNU1-101P,RP11-152C15.1,BTF3P12,RP11-333A23.1,Metazoa_SRP,RP11-333A23.4,RP11-333A23.2,snoU13,RN7SL19P,RP11-326E22.1,TRAPPC2P2,AC099805.1,RP11-1144P22.1,RP11-281N10.1,U8,AC104012.1,RPS20P20,RP11-142A23.1,RP11-656G20.1,RNA5SP271,RP11-351E7.2,RP11-351E7.1,HAUS1P3,RP11-313C15.1,RP11-1145L24.1,RP11-531A24.3,RNU6-285P,RP11-531A24.7,RP11-531A24.5,RP11-956J14.1,RP11-956J14.2,RP11-434I12.5,RP11-434I12.2,RP11-434I12.3,RP11-434I12.4,STAU2-AS1,RP11-181D18.4,RP11-116B19.2,VENTXP6,RP11-463D19.1,RP11-99A14.1,GYG1P1,RPS20P21,RP11-367E12.4,RNU6-1300P,RP11-6I2.3,RPS3AP32,RNU6-1197P,RP11-6I2.4,RP1-16A9.1,CTD-2320G14.2,MIR5681A,RP11-730G20.2,RP11-730G20.1,RP11-758M4.4,RP11-758M4.3,RP11-3N13.2,RP11-300E4.2,RP11-697M17.2,CASC9,HIGD1AP6,PKMP4,AC016194.1,RNU2-54P,RP11-706J10.2,LINC01109,LINC01111,ZFHX4-AS1,RP11-115I9.1,MRPL9P1,RP11-48D4.2,PREX2,RP11-664D7.4,C8orf34,SULF1,SLCO5A1,AC090574.1,PRDM14,NCOA2,TRAM1,AC120194.1,RP11-382J12.1,LACTB2,XKR9,EYA1,RP11-1102P16.1,RP11-383H13.1,MSC,TRPA1,KCNB2,TERF1,SBSPON,RPL7,RDH10,STAU2,RP11-463D19.2,UBE2W,TCEB1,TMEM70 - NA - - - - NA - - - - - -
Tumour_013 MantaDEL:101800:0:1:0:0:0 DEL chr8 79964547 79964550 + chr8 80229493 80229496 - 85 PASS 15 0 10 0 - - - - - - - - - - - - - - - - 2 AC009941.1,RP11-1114I9.1 - NA - - - - NA - - - - - -
Tumour_013 MantaDEL:101992:0:1:0:0:0 DEL chr8 83025245 83025246 + chr8 85276233 85276234 - 138 PASS 34 0 20 0 - - - - 3' RP11-99H20.1 - - - - - - - - - - 12 HNRNPA1P4,RP11-653B10.1,RP11-731N10.1,CTD-2272D18.1,CTD-2272D18.2,RP11-296C13.1,RP11-813B8.1,RP11-51M18.1,RP11-120I21.2,TPM3P3,RP11-120I21.3,AC103816.1 ENSG00000254123 chr8 83010686 83072812 -1 - NA - - - - - -
Tumour_013 MantaDEL:105126:0:1:0:1:0 DEL chr8 130378160 130378164 + chr8 131590993 131590997 - 54 PASS 6 0 1 0 - - - - 3' CCDC26 - - - - - - - - - - 22 RP11-26E5.1,MIR3686,hsa-mir-3673,AC011652.2,AC011652.1,AC016178.1,hsa-mir-3669,AC016178.2,RP11-419K12.1,RP11-274M4.1,RP11-473O4.5,RP11-473O4.1,SNORA25,RP11-473O4.4,RP11-473O4.3,RNU7-181P,MIR5194,RNU6-1255P,AC131568.1,SNORA12,GSDMC,FAM49B ENSG00000229140 chr8 130363937 130692485 -1 - NA - - - - - -
Tumour_013 MantaDEL:107645:0:1:0:0:0 DEL chr9 19945005 19945008 + chr9 19998912 19998915 - 54 PASS 6 0 5 0 - - - - - - - - - - - - - - - - 1 RP11-378I6.2 - NA - - - - NA - - - - - -
Tumour_013 MantaDEL:108377:0:1:0:0:0 DEL chr9 30390737 30390741 + chr9 30448351 30448355 - 51 PASS 6 0 4 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaDEL:108700:0:1:0:0:0 DEL chr9 35235826 35235828 + chr9 35294702 35294704 - 68 PASS 10 0 8 0 - - - - 5' UNC13B 3' UNC13B INTERNL 6 EXONS DELETED - - INTERNL 6 EXONS DELETED - - 0 - ENSG00000198722 chr9 35161999 35405335 1 ENSG00000198722 chr9 35161999 35405335 1 - - -
Tumour_013 MantaDEL:118292:0:0:0:0:0 DEL chr10 56946989 56946991 + chr10 56947424 56947425 - 64 PASS 4 0 11 0 - - - - 3' PCDH15 5' PCDH15 INTERNL 0 EXONS DELETED - - INTERNL 0 EXONS DELETED - - 0 - ENSG00000150275 chr10 55562531 57387702 -1 ENSG00000150275 chr10 55562531 57387702 -1 - - -
Tumour_013 MantaDEL:121480:0:1:0:0:0 DEL chr10 106998105 106998109 + chr10 106998793 106998794 - 47 PASS 3 0 7 0 - - - - 5' SORCS3 3' SORCS3 INTERNL 0 EXONS DELETED - 1 INTERNL 0 EXONS DELETED - - 0 - ENSG00000156395 chr10 106400859 107024993 1 ENSG00000156395 chr10 106400859 107024993 1 - - -
Tumour_013 MantaDEL:123908:0:0:0:0:0 DEL chr11 5110605 5110607 + chr11 5110707 5110708 - 42 PASS 0 0 6 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaDEL:129081:0:1:0:0:0 DEL chr11 81586957 81586958 + chr11 81588382 81588383 - 79 PASS 10 0 10 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaDEL:129538:0:1:0:0:0 DEL chr11 88547802 88547806 + chr11 89156724 89156728 - 86 PASS 8 0 9 0 - - DLG2 DLG2 - - - - - - - - - - - - 2 AP001482.1,CBX3P7 - NA - - - - NA - - - - - -
Tumour_013 MantaDEL:134087:0:1:0:0:0 DEL chr12 18519152 18519153 + chr12 18644283 18644284 - 84 PASS 11 0 7 0 - - - - 5' PIK3C2G 3' PIK3C2G INTERNL 9 EXONS DELETED - 2 INTERNL 9 EXONS DELETED - - 1 RP11-459D22.1 ENSG00000139144 chr12 18400548 18801348 1 ENSG00000139144 chr12 18400548 18801348 1 - - -
Tumour_013 MantaDEL:134550:0:1:0:0:0 DEL chr12 23238088 23238089 + chr12 23247653 23247654 - 54 PASS 44 0 33 0 - - SOX5 SOX5 5' RP11-114G22.1 3' RP11-114G22.1 INTERNL 0 EXONS DELETED - 7 INTERNL 0 EXONS DELETED - - 0 - ENSG00000256995 chr12 22852793 23327057 1 ENSG00000256995 chr12 22852793 23327057 1 - - -
Tumour_013 MantaDEL:136221:0:1:0:0:0 DEL chr12 41383444 41383449 + chr12 41428836 41428841 - 94 PASS 16 0 12 0 - - - - 5' CNTN1 3' CNTN1 INTERNL 10 EXONS DELETED - 7 INTERNL 10 EXONS DELETED - - 0 - ENSG00000018236 chr12 41086244 41466220 1 ENSG00000018236 chr12 41086244 41466220 1 - - -
Tumour_013 MantaDEL:144434:0:1:0:0:0 DEL chr13 37633645 37633648 + chr13 37655353 37655356 - 51 PASS 6 0 4 0 - - - - 3' SUPT20H - - - - - - - - - - 0 - ENSG00000102710 chr13 37583449 37633850 -1 - NA - - - - - -
Tumour_013 MantaDEL:150854:0:1:0:0:0 DEL chr14 28626723 28626724 + chr14 28628482 28628483 - 71 PASS 12 0 12 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaDEL:151862:0:1:0:0:0 DEL chr14 43391782 43391784 + chr14 43397426 43397428 - 38 PASS 5 0 4 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaDEL:153467:0:1:0:0:0 DEL chr14 66010080 66010656 + chr14 66114281 66114993 - 74 PASS 15 0 0 0 - - - - 5' FUT8 3' FUT8 INTERNL 15 EXONS DELETED - 2 INTERNL 15 EXONS DELETED - - 0 - ENSG00000033170 chr14 65877310 66210839 1 ENSG00000033170 chr14 65877310 66210839 1 - - -
Tumour_013 MantaDEL:153557:0:1:0:0:0 DEL chr14 66897883 66897885 + chr14 66897955 66897956 - 44 PASS 0 0 7 0 - - - - 3' RP11-72M17.1 5' RP11-72M17.1 INTERNL 0 EXONS DELETED - - INTERNL 0 EXONS DELETED - 1 0 - ENSG00000258561 chr14 66679528 66976112 -1 ENSG00000258561 chr14 66679528 66976112 -1 - - -
Tumour_013 MantaDEL:155026:0:1:0:0:0 DEL chr14 87546944 87546949 + chr14 89235327 89235332 - 60 PASS 5 0 8 0 - - - - - - 5' EML5 - - - - - - - - 24 RP11-325D8.1,CTD-2007A10.1,RP11-1152H15.1,RP11-804L24.2,FAM35CP,RNU6-835P,RP11-300J18.2,RP11-300J18.1,LINC01146,RP11-753D20.1,RP11-753D20.4,RP11-753D20.3,RP11-507K2.2,RNU4-22P,RP11-507K2.3,RP11-1141N12.1,RP11-594C13.2,RP11-594C13.1,GALC,GPR65,KCNK10,SPATA7,PTPN21,ZC3H14 - NA - - - ENSG00000165521 chr14 89078775 89259096 -1 - - -
Tumour_013 MantaDEL:156092:0:1:0:1:0 DEL chr14 103325803 103325805 + chr14 104149864 104149866 - 64 PASS 10 0 4 0 - - - - 5' TRAF3 3' KLC1 FUSION+ 5' of TRAF3 into 3' of KLC1 - - FUSION+ 5' of TRAF3 into 3' of KLC1 - - 35 RNU6-1316P,AL117209.1,RP11-365N19.2,RPL13P6,RP11-736N17.8,LINC00677,RP11-736N17.4,RPL21P12,GCSHP2,LINC00605,AL161669.1,RP11-736N17.9,RPL21P13,RAP2CP1,RP11-45P15.2,RP11-45P15.4,SNORA28,HMGB3P26,RP11-600F24.1,RP11-600F24.2,RP11-600F24.7,RNU7-160P,RP11-894P9.2,RNU4-68P,AL139300.1,AMN,CDC42BPB,EXOC3L4,TNFAIP2,EIF5,MARK3,CKB,TRMT61A,BAG5,APOPT1 ENSG00000131323 chr14 103243813 103377837 1 ENSG00000126214 chr14 104028233 104167888 1 - - -
Tumour_013 MantaDEL:156092:0:1:0:1:0 DEL chr14 103325803 103325805 + chr14 104149864 104149866 - 64 PASS 10 0 4 0 - - - - 5' TRAF3 3' RP11-73M18.2 FUSION+ 5' of TRAF3 into 3' of RP11-73M18.2 - - FUSION+ 5' of TRAF3 into 3' of RP11-73M18.2 - - 35 RNU6-1316P,AL117209.1,RP11-365N19.2,RPL13P6,RP11-736N17.8,LINC00677,RP11-736N17.4,RPL21P12,GCSHP2,LINC00605,AL161669.1,RP11-736N17.9,RPL21P13,RAP2CP1,RP11-45P15.2,RP11-45P15.4,SNORA28,HMGB3P26,RP11-600F24.1,RP11-600F24.2,RP11-600F24.7,RNU7-160P,RP11-894P9.2,RNU4-68P,AL139300.1,AMN,CDC42BPB,EXOC3L4,TNFAIP2,EIF5,MARK3,CKB,TRMT61A,BAG5,APOPT1 ENSG00000131323 chr14 103243813 103377837 1 ENSG00000256500 chr14 104029299 104152261 1 - - -
Tumour_013 MantaDEL:156092:0:1:0:1:0 DEL chr14 103325803 103325805 + chr14 104149864 104149866 - 64 PASS 10 0 4 0 - - - - 5' TRAF3 5' RP11-894P9.1 - - - - - - - - 35 RNU6-1316P,AL117209.1,RP11-365N19.2,RPL13P6,RP11-736N17.8,LINC00677,RP11-736N17.4,RPL21P12,GCSHP2,LINC00605,AL161669.1,RP11-736N17.9,RPL21P13,RAP2CP1,RP11-45P15.2,RP11-45P15.4,SNORA28,HMGB3P26,RP11-600F24.1,RP11-600F24.2,RP11-600F24.7,RNU7-160P,RP11-894P9.2,RNU4-68P,AL139300.1,AMN,CDC42BPB,EXOC3L4,TNFAIP2,EIF5,MARK3,CKB,TRMT61A,BAG5,APOPT1 ENSG00000131323 chr14 103243813 103377837 1 ENSG00000246451 chr14 104148699 104150352 -1 - - -
Tumour_013 MantaDEL:165883:0:1:0:0:0 DEL chr16 66576450 66576451 + chr16 66578158 66578159 - 47 PASS 7 0 7 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaDEL:166417:0:1:0:0:0 DEL chr16 75442033 75442034 + chr16 75661319 75661320 - 64 PASS 9 0 6 0 - - - - 3' CFDP1 - - - - - - - - - - 13 SNORA76,RP11-77K12.3,RP11-77K12.4,RP11-77K12.5,RP11-77K12.8,RP11-77K12.1,TMEM170A,CHST6,RP11-77K12.7,CHST5,TMEM231,GABARAPL2,ADAT1 ENSG00000153774 chr16 75327596 75467383 -1 - NA - - - - - -
Tumour_013 MantaDEL:166638:0:1:0:0:0 DEL chr16 78678871 78678872 + chr16 78681168 78681169 - 63 PASS 9 0 7 0 - - WWOX WWOX 5' WWOX 3' WWOX INTERNL 0 EXONS DELETED - 9 INTERNL 0 EXONS DELETED - - 0 - ENSG00000186153 chr16 78133310 79246564 1 ENSG00000186153 chr16 78133310 79246564 1 - - -
Tumour_013 MantaDEL:176440:0:1:0:0:0 DEL chr18 50423036 50423037 + chr18 50439598 50439599 - 68 PASS 7 0 5 0 - - - - 5' DCC 3' DCC INTERNL 4 EXONS DELETED - 4 INTERNL 4 EXONS DELETED - - 0 - ENSG00000187323 chr18 49866542 51057784 1 ENSG00000187323 chr18 49866542 51057784 1 - - -
Tumour_013 MantaDEL:184951:0:1:0:0:0 DEL chr20 24222972 24222976 + chr20 24330537 24330541 - 44 PASS 5 0 6 0 - - - - - - - - - - - - - - - - 1 RP4-564O4.1 - NA - - - - NA - - - - - -
Tumour_013 MantaDEL:188090:0:1:0:0:0 DEL chr21 18109379 18109386 + chr21 18420620 18420627 - 99 PASS 13 0 9 0 - - - - - - - - - - - - - - - - 2 AP000473.6,AF212831.2 - NA - - - - NA - - - - - -
Tumour_013 MantaDEL:191658:0:1:0:0:0 DEL chr22 35333676 35333681 + chr22 35333729 35333730 - 41 PASS 0 0 11 0 - - - - 3' RP1-272J12.1 5' RP1-272J12.1 INTERNL 0 EXONS DELETED - - INTERNL 0 EXONS DELETED - 1 0 - ENSG00000227895 chr22 35318599 35468259 -1 ENSG00000227895 chr22 35318599 35468259 -1 - - -
Tumour_013 MantaDEL:194967:0:1:0:0:0 DEL chrX 55952060 55952061 + chrX 55954212 55954213 - 37 PASS 6 0 3 0 - - - - 5' RP13-188A5.1 3' RP13-188A5.1 INTERNL 0 EXONS DELETED - - INTERNL 0 EXONS DELETED - - 0 - ENSG00000227486 chrX 55934556 56041606 1 ENSG00000227486 chrX 55934556 56041606 1 - - -
Tumour_013 MantaDEL:195009:0:1:0:0:0 DEL chrX 58359681 58359682 + chrX 58420206 58420207 - 56 PASS 6 0 3 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaDEL:195232:0:1:0:0:0 DEL chrX 69462958 69462961 + chrX 69464141 69464144 - 93 PASS 7 0 16 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaDUP:TANDEM:0:5305:5306:0:0:0 DUP chr3 175513693 175513694 - chr3 175518168 175518169 + 40 PASS 3 0 5 0 - - NAALADL2 NAALADL2 3' NAALADL2 5' NAALADL2 INTERNL PROB INV OR TDUP - - INTERNL PROB INV OR TDUP - 11 0 - ENSG00000177694 chr3 174156363 175523428 1 ENSG00000177694 chr3 174156363 175523428 1 - - -
Tumour_013 MantaDUP:TANDEM:0:27377:27391:0:0:0 DUP chr17 57418383 57418384 - chr17 61897176 61897177 + 61 PASS 8 0 7 0 - - - - 3' YPEL2 3' FTSJ3 - - - - - - - - 0 - ENSG00000175155 chr17 57409050 57479090 1 ENSG00000108592 chr17 61896793 61907372 -1 - - -
Tumour_013 MantaDUP:TANDEM:0:35445:42686:0:0:0 DUP chr8 50275512 50276031 - chr8 50452420 50452851 + 64 PASS 9 0 0 0 - - - - - - 3' RP11-738G5.2 - - - - - - - - 0 - - NA - - - ENSG00000253206 chr8 50448945 50466973 -1 - - -
Tumour_013 MantaDUP:TANDEM:0:35445:43419:1:0:0 DUP chr8 15467760 15468223 - chr8 50452399 50452897 + 64 PASS 8 0 0 0 - - - - 3' TUSC3 3' RP11-738G5.2 - - - - - - - - 0 - ENSG00000104723 chr8 15274724 15624158 1 ENSG00000253206 chr8 50448945 50466973 -1 - - -
Tumour_013 MantaDUP:TANDEM:0:36098:40550:0:0:0 DUP chr8 65710907 65710908 - chr8 77860910 77860911 + 67 PASS 12 0 9 0 - - - - 5' CYP7B1 - - - - - - - - - - 0 - ENSG00000172817 chr8 65500320 65711318 -1 - NA - - - - - -
Tumour_013 MantaDUP:TANDEM:0:37119:44149:0:0:0 DUP chr8 36743683 36743684 - chr8 80173278 80173279 + 55 PASS 3 0 7 0 - - - - 3' KCNU1 - - - - - - - - - - 0 - ENSG00000215262 chr8 36641842 36793646 1 - NA - - - - - -
Tumour_013 MantaDUP:TANDEM:0:37712:42686:2:0:0 DUP chr8 40553158 40553620 - chr8 50275964 50276478 + 46 PASS 6 0 0 0 - - - - 5' ZMAT4 - - - - - 5 - - - - 0 - ENSG00000165061 chr8 40388109 40755352 -1 - NA - - - - - -
Tumour_013 MantaDUP:TANDEM:0:37712:43035:2:0:0 DUP chr8 36557733 36558228 - chr8 40553546 40554090 + 38 PASS 6 0 0 0 - - - - 5' RP11-962G15.1 3' ZMAT4 FUSION+ 5' of RP11-962G15.1 into 3' of ZMAT4 - 1 FUSION+ 5' of RP11-962G15.1 into 3' of ZMAT4 - - 0 - ENSG00000253363 chr8 36394909 36636682 -1 ENSG00000165061 chr8 40388109 40755352 -1 - - -
Tumour_013 MantaDUP:TANDEM:0:39893:42686:1:0:0 DUP chr8 32550091 32550517 - chr8 50275978 50276497 + 52 PASS 4 0 0 0 - - - - 3' NRG1 - - - - - - - - - - 0 - ENSG00000157168 chr8 31496902 32622548 1 - NA - - - - - -
Tumour_013 MantaDUP:TANDEM:0:42554:43382:0:0:0 DUP chr8 36532691 36532692 - chr8 77979607 77979608 + 100 PASS 8 0 24 0 - - - - 5' RP11-962G15.1 - - - - - 1 - - - - 0 - ENSG00000253363 chr8 36394909 36636682 -1 - NA - - - - - -
Tumour_013 MantaDUP:TANDEM:0:42572:42686:0:0:0 DUP chr8 50275592 50275981 - chr8 79996141 79996614 + 58 PASS 8 0 0 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaDUP:TANDEM:0:42686:44107:0:0:0 DUP chr8 50275434 50275982 - chr8 77685346 77685903 + 93 PASS 20 0 0 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaDUP:TANDEM:0:43035:43701:0:0:0 DUP chr8 32545480 32545983 - chr8 36558267 36558720 + 50 PASS 8 0 0 0 - - - - 3' NRG1 3' RP11-962G15.1 - - - - - - - - 0 - ENSG00000157168 chr8 31496902 32622548 1 ENSG00000253363 chr8 36394909 36636682 -1 - - -
Tumour_013 MantaDUP:TANDEM:10871:6:6:3:0:0 DUP chr6 143465726 143465727 - chr6 143466445 143466446 + 45 PASS 4 0 10 0 - - - - 3' AIG1 5' AIG1 INTERNL PROB INV OR TDUP - - INTERNL PROB INV OR TDUP - 1 0 - ENSG00000146416 chr6 143381633 143661441 1 ENSG00000146416 chr6 143381633 143661441 1 - - -
Tumour_013 MantaDUP:TANDEM:18251:0:1:0:0:0 DUP chr2 26705279 26705280 - chr2 27198273 27198274 + 66 PASS 7 0 10 0 - - - - 5' OTOF 5' MAPRE3 - - - - - - - - 0 - ENSG00000115155 chr2 26680071 26781566 -1 ENSG00000084764 chr2 27193480 27250064 1 - - -
Tumour_013 MantaDUP:TANDEM:18251:0:1:0:0:0 DUP chr2 26705279 26705280 - chr2 27198273 27198274 + 66 PASS 7 0 10 0 - - - - 5' OTOF 3' AC013472.4 FUSION+ 5' of OTOF into 3' of AC013472.4 - - FUSION+ 5' of OTOF into 3' of AC013472.4 - - 0 - ENSG00000115155 chr2 26680071 26781566 -1 ENSG00000230286 chr2 27173176 27232675 -1 - - -
Tumour_013 MantaDUP:TANDEM:21830:0:1:0:0:0 DUP chr2 78537843 78537846 - chr2 78543502 78543505 + 68 PASS 12 0 9 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaDUP:TANDEM:33219:0:1:0:0:0 DUP chr3 2641177 2641183 - chr3 2740013 2740019 + 74 PASS 7 0 11 0 - - - - 3' CNTN4 5' CNTN4 INTERNL PROB INV OR TDUP - - INTERNL PROB INV OR TDUP - 1 0 - ENSG00000144619 chr3 2140497 3099645 1 ENSG00000144619 chr3 2140497 3099645 1 - - -
Tumour_013 MantaDUP:TANDEM:37005:0:1:0:1:0 DUP chr3 60190536 60190540 - chr3 60195263 60195267 + 39 PASS 4 0 4 0 - - FHIT FHIT - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaDUP:TANDEM:37403:0:1:0:0:0 DUP chr3 65721339 65721342 - chr3 65732187 65732190 + 61 PASS 5 0 6 0 - - - - 5' MAGI1 3' MAGI1 INTERNL PROB INV OR TDUP - - INTERNL PROB INV OR TDUP - - 0 - ENSG00000151276 chr3 65339200 66024509 -1 ENSG00000151276 chr3 65339200 66024509 -1 - - -
Tumour_013 MantaDUP:TANDEM:45833:0:1:0:0:0 DUP chr3 192525138 192525141 - chr3 192575671 192575674 + 59 PASS 3 0 7 0 - - LPP LPP 5' MB21D2 3' MB21D2 INTERNL PROB INV OR TDUP - - INTERNL PROB INV OR TDUP - - 0 - ENSG00000180611 chr3 192514604 192635950 -1 ENSG00000180611 chr3 192514604 192635950 -1 - - -
Tumour_013 MantaDUP:TANDEM:50114:0:1:0:0:0 DUP chr4 54440872 54441370 - chr4 54476811 54477310 + 42 PASS 6 0 0 0 - - - - 3' FIP1L1 5' FIP1L1 INTERNL PROB INV OR TDUP - - INTERNL PROB INV OR TDUP - 13 0 - ENSG00000145216 chr4 54243810 55161439 1 ENSG00000145216 chr4 54243810 55161439 1 - - -
Tumour_013 MantaDUP:TANDEM:50114:0:1:0:0:0 DUP chr4 54440872 54441370 - chr4 54476811 54477310 + 42 PASS 6 0 0 0 - - - - 3' FIP1L1 3' LNX1 - - - - - - - - 0 - ENSG00000145216 chr4 54243810 55161439 1 ENSG00000072201 chr4 54325468 54567572 -1 - - -
Tumour_013 MantaDUP:TANDEM:50114:0:1:0:0:0 DUP chr4 54440872 54441370 - chr4 54476811 54477310 + 42 PASS 6 0 0 0 - - - - 5' LNX1 5' FIP1L1 - - - - - - - 13 0 - ENSG00000072201 chr4 54325468 54567572 -1 ENSG00000145216 chr4 54243810 55161439 1 - - -
Tumour_013 MantaDUP:TANDEM:50114:0:1:0:0:0 DUP chr4 54440872 54441370 - chr4 54476811 54477310 + 42 PASS 6 0 0 0 - - - - 5' LNX1 3' LNX1 INTERNL PROB INV OR TDUP - - INTERNL PROB INV OR TDUP - - 0 - ENSG00000072201 chr4 54325468 54567572 -1 ENSG00000072201 chr4 54325468 54567572 -1 - - -
Tumour_013 MantaDUP:TANDEM:50477:0:1:0:0:0 DUP chr4 59483296 59483300 - chr4 59893920 59893924 + 85 PASS 17 0 9 0 - - - - - - 5' RP11-340A13.2 - - - - - - - - 0 - - NA - - - ENSG00000251266 chr4 59850000 59912677 1 - - -
Tumour_013 MantaDUP:TANDEM:60948:1:2:0:0:0 DUP chr5 11129350 11129351 - chr5 11130652 11130653 + 33 PASS 3 0 2 0 - - - - 5' CTNND2 3' CTNND2 INTERNL PROB INV OR TDUP - 9 INTERNL PROB INV OR TDUP - - 0 - ENSG00000169862 chr5 10971952 11904155 -1 ENSG00000169862 chr5 10971952 11904155 -1 - - -
Tumour_013 MantaDUP:TANDEM:68519:0:1:0:0:0 DUP chr5 126466695 126466698 - chr5 126640432 126640435 + 61 PASS 8 0 5 0 - - - - - - 5' MEGF10 - - - - - - - - 0 - - NA - - - ENSG00000145794 chr5 126626523 126801429 1 - - -
Tumour_013 MantaDUP:TANDEM:68622:0:1:0:0:0 DUP chr5 128548233 128548234 - chr5 129006577 129006578 + 84 PASS 11 0 10 0 - - - - - - 5' ADAMTS19 - - - - - - - 2 0 - - NA - - - ENSG00000145808 chr5 128795958 129074376 1 - - -
Tumour_013 MantaDUP:TANDEM:68622:0:1:0:0:0 DUP chr5 128548233 128548234 - chr5 129006577 129006578 + 84 PASS 11 0 10 0 - - - - - - 3' CTC-575N7.1 - - - - - - - - 0 - - NA - - - ENSG00000251680 chr5 128836054 129241610 -1 - - -
Tumour_013 MantaDUP:TANDEM:82552:0:1:0:0:0 DUP chr6 148955113 148955118 - chr6 148955186 148955191 + 71 PASS 0 0 17 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaDUP:TANDEM:92657:0:1:0:0:0 DUP chr7 111159546 111159549 - chr7 111165560 111165563 + 102 PASS 25 0 19 0 - - IMMP2L IMMP2L 5' IMMP2L 3' IMMP2L INTERNL PROB INV OR TDUP - - INTERNL PROB INV OR TDUP - - 0 - ENSG00000184903 chr7 110303110 111202573 -1 ENSG00000184903 chr7 110303110 111202573 -1 - - -
Tumour_013 MantaDUP:TANDEM:94808:0:3:0:0:0 DUP chr7 139793984 139793985 - chr7 140024547 140024548 + 77 PASS 8 0 13 0 - - - - 5' KDM7A 3' SLC37A3 FUSION+ 5' of KDM7A into 3' of SLC37A3 - 1 FUSION+ 5' of KDM7A into 3' of SLC37A3 - - 0 - ENSG00000006459 chr7 139784546 139876835 -1 ENSG00000157800 chr7 139993493 140104233 -1 - - -
Tumour_013 MantaDUP:TANDEM:94808:2:5:0:0:0 DUP chr7 139863756 139863757 - chr7 140038365 140038366 + 52 PASS 7 0 9 0 - - - - 5' KDM7A 3' SLC37A3 FUSION+ 5' of KDM7A into 3' of SLC37A3 - - FUSION+ 5' of KDM7A into 3' of SLC37A3 - - 0 - ENSG00000006459 chr7 139784546 139876835 -1 ENSG00000157800 chr7 139993493 140104233 -1 - - -
Tumour_013 MantaDUP:TANDEM:96701:0:1:0:0:0 DUP chr8 3231507 3231513 - chr8 16717038 16717044 + 31 PASS 8 0 10 1 - - - - 5' CSMD1 3' RP11-13N12.1 FUSION+ 5' of CSMD1 into 3' of RP11-13N12.1 - 4 FUSION+ 5' of CSMD1 into 3' of RP11-13N12.1 - - 0 - ENSG00000183117 chr8 2792875 4852494 -1 ENSG00000253496 chr8 16534414 16772553 -1 - - -
Tumour_013 MantaDUP:TANDEM:96701:0:1:0:0:0 DUP chr8 3231507 3231513 - chr8 16717038 16717044 + 31 PASS 8 0 10 1 - - - - 5' RP11-279L11.1 3' RP11-13N12.1 FUSION+ 5' of RP11-279L11.1 into 3' of RP11-13N12.1 - - FUSION+ 5' of RP11-279L11.1 into 3' of RP11-13N12.1 - - 0 - ENSG00000253162 chr8 3230875 3232748 -1 ENSG00000253496 chr8 16534414 16772553 -1 - - -
Tumour_013 MantaDUP:TANDEM:96701:1:2:0:0:0 DUP chr8 16716813 16716816 - chr8 35511360 35511363 + 80 PASS 14 0 8 0 - - - - 5' RP11-13N12.1 5' UNC5D - - - - - - - - 0 - ENSG00000253496 chr8 16534414 16772553 -1 ENSG00000156687 chr8 35092975 35654068 1 - - -
Tumour_013 MantaDUP:TANDEM:96701:2:3:0:0:0 DUP chr8 35511050 35511051 - chr8 77938282 77938283 + 54 PASS 4 0 7 0 - - - - 3' UNC5D - - - - - - - - - - 0 - ENSG00000156687 chr8 35092975 35654068 1 - NA - - - - - -
Tumour_013 MantaDUP:TANDEM:96977:0:1:0:0:0 DUP chr8 5677640 5677643 - chr8 5684321 5684324 + 99 PASS 23 0 17 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaDUP:TANDEM:103277:0:1:0:0:0 DUP chr8 103712543 103712544 - chr8 103905573 103905574 + 48 PASS 4 0 4 0 - - - - - - 5' KB-1507C5.2 - - - - - - - 5 0 - - NA - - - ENSG00000253320 chr8 103876528 103990104 1 - - -
Tumour_013 MantaDUP:TANDEM:103277:0:1:0:0:0 DUP chr8 103712543 103712544 - chr8 103905573 103905574 + 48 PASS 4 0 4 0 - - - - - - 3' AZIN1 - - - - - - - - 0 - - NA - - - ENSG00000155096 chr8 103838585 103906092 -1 - - -
Tumour_013 MantaDUP:TANDEM:103277:0:1:0:0:0 DUP chr8 103712543 103712544 - chr8 103905573 103905574 + 48 PASS 4 0 4 0 - - - - - - 5' KB-1507C5.3 - - - - - - - - 0 - - NA - - - ENSG00000253263 chr8 103904104 103905836 1 - - -
Tumour_013 MantaDUP:TANDEM:113039:0:1:0:0:0 DUP chr9 123729169 123729176 - chr9 124117220 124117227 + 51 PASS 5 0 5 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaDUP:TANDEM:118287:0:1:0:0:0 DUP chr10 56891960 56891963 - chr10 57276927 57276930 + 83 PASS 12 0 9 0 - - - - 5' PCDH15 3' PCDH15 INTERNL PROB INV OR TDUP - - INTERNL PROB INV OR TDUP - - 0 - ENSG00000150275 chr10 55562531 57387702 -1 ENSG00000150275 chr10 55562531 57387702 -1 - - -
Tumour_013 MantaDUP:TANDEM:118287:0:1:0:0:0 DUP chr10 56891960 56891963 - chr10 57276927 57276930 + 83 PASS 12 0 9 0 - - - - 5' PCDH15 3' RP11-168O22.1 FUSION+ 5' of PCDH15 into 3' of RP11-168O22.1 - - FUSION+ 5' of PCDH15 into 3' of RP11-168O22.1 - - 0 - ENSG00000150275 chr10 55562531 57387702 -1 ENSG00000236744 chr10 57007515 57356993 -1 - - -
Tumour_013 MantaDUP:TANDEM:118535:0:1:0:0:0 DUP chr10 60321710 60322140 - chr10 60466032 60466573 + 60 PASS 9 0 0 0 - - - - 3' BICC1 5' BICC1 INTERNL PROB INV OR TDUP - - INTERNL PROB INV OR TDUP - 1 0 - ENSG00000122870 chr10 60272900 60591195 1 ENSG00000122870 chr10 60272900 60591195 1 - - -
Tumour_013 MantaDUP:TANDEM:134610:0:1:0:0:0 DUP chr12 23242065 23242066 - chr12 23665043 23665044 + 49 PASS 23 0 25 0 - - SOX5 SOX5 3' RP11-114G22.1 - - - - - - - - - - 0 - ENSG00000256995 chr12 22852793 23327057 1 - NA - - - - - -
Tumour_013 MantaDUP:TANDEM:134892:0:1:0:0:0 DUP chr12 24854288 24854291 - chr12 25479291 25479294 + 195 PASS 399 0 336 0 - - SOX5 SOX5 - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaDUP:TANDEM:141583:0:1:0:0:0 DUP chr12 119996500 119996505 - chr12 120231180 120231185 + 78 PASS 14 0 11 0 - - - - 5' RP11-768F21.1 3' CIT FUSION+ 5' of RP11-768F21.1 into 3' of CIT - - FUSION+ 5' of RP11-768F21.1 into 3' of CIT - - 0 - ENSG00000248636 chr12 119825792 120105884 -1 ENSG00000122966 chr12 120123595 120315095 -1 - - -
Tumour_013 MantaDUP:TANDEM:151682:0:1:0:0:0 DUP chr14 41296724 41296727 - chr14 41296872 41296875 + 37 PASS 0 0 8 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaDUP:TANDEM:155026:1:2:0:0:0 DUP chr14 89234522 89234526 - chr14 89235610 89235614 + 75 PASS 13 0 10 0 - - - - 5' EML5 3' EML5 INTERNL PROB INV OR TDUP - - INTERNL PROB INV OR TDUP - - 0 - ENSG00000165521 chr14 89078775 89259096 -1 ENSG00000165521 chr14 89078775 89259096 -1 - - -
Tumour_013 MantaDUP:TANDEM:156255:0:1:0:0:0 DUP chr14 105192451 105192452 - chr14 105744945 105744946 + 45 PASS 5 0 3 0 - - - - 3' ADSSL1 - - - - - - - - - - 0 - ENSG00000185100 chr14 105190523 105213662 1 - NA - - - - - -
Tumour_013 MantaDUP:TANDEM:159563:0:1:0:1:0 DUP chr15 66001053 66001054 - chr15 66001144 66001145 + 32 PASS 0 0 6 0 - - - - 5' DENND4A 3' DENND4A INTERNL PROB INV OR TDUP - 1 INTERNL PROB INV OR TDUP - - 0 - ENSG00000174485 chr15 65950384 66084631 -1 ENSG00000174485 chr15 65950384 66084631 -1 - - -
Tumour_013 MantaDUP:TANDEM:173057:0:1:0:0:0 DUP chr17 78114761 78114783 - chr17 78122837 78122859 + 78 PASS 18 0 8 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaDUP:TANDEM:184003:0:1:0:0:0 DUP chr20 11183640 11183643 - chr20 11262761 11262764 + 51 PASS 6 0 4 0 - - MACROD2 MACROD2 - - 3' RP4-734C18.1 - - - - - - - - 0 - - NA - - - ENSG00000230990 chr20 11214818 11282173 -1 - - -
Tumour_013 MantaDUP:TANDEM:184802:0:1:0:0:0 DUP chr20 21450970 21450974 - chr20 21912801 21912805 + 45 PASS 3 0 4 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaDUP:TANDEM:191052:0:1:0:0:0 DUP chr22 25905338 25905340 - chr22 25905440 25905442 + 38 PASS 0 0 7 0 - - - - 3' CRYBB2P1 5' CRYBB2P1 INTERNL PROB INV OR TDUP - - INTERNL PROB INV OR TDUP - 3 0 - ENSG00000100058 chr22 25844072 25916821 1 ENSG00000100058 chr22 25844072 25916821 1 - - -
Tumour_013 MantaINS:0:1725:1725:0:3:0 INS chr1 191512617 191512618 + chr1 191512632 191512633 - 35 PASS 3 0 3 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Tumour_013 MantaINS:0:18756:18756:0:2:0 INS chr5 166073397 166073411 + chr5 166073397 166073411 - 90 PASS 0 0 22 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaBND:0:4068:13091:0:1:0:0_MantaBND:0:4068:13091:0:1:0:1 BND chr7 159126335 159126336 + chr7 159127779 159127780 + 47 PASS 4 0 10 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaBND:0:6167:41706:0:0:0:1_MantaBND:0:6167:41706:0:0:0:0 BND chr8 36535259 36535260 + chr8 130131818 130131819 + 70 PASS 2 0 11 0 - - - - 3' RP11-962G15.1 - - - - - - - - - - 0 - ENSG00000253363 chr8 36394909 36636682 -1 - NA - - - - - -
Organoid_013 MantaBND:0:7896:7897:0:0:0:1_MantaBND:0:7896:7897:0:0:0:0 BND chr5 151504886 151504887 + chrX 11731312 11731313 - 48 PASS 2 0 6 0 - - - NLGN4X 5' CTB-12O2.1 - - - - - - - - - - 0 - ENSG00000254226 chr5 151329132 151650009 1 - NA - - - - - -
Organoid_013 MantaBND:0:7995:7996:0:0:0:0_MantaBND:0:7995:7996:0:0:0:1 BND chr1 225083402 225083403 + chrX 11731435 11731436 + 56 PASS 4 0 13 0 - - USH2A NLGN4X - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaBND:0:7995:8001:0:0:0:1_MantaBND:0:7995:8001:0:0:0:0 BND chr4 108321931 108321933 + chrX 11731945 11731947 - 74 PASS 6 0 5 0 - - - NLGN4X - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaBND:0:7995:8001:1:0:0:1_MantaBND:0:7995:8001:1:0:0:0 BND chr4 108321582 108322058 - chrX 11732411 11732930 + 74 PASS 7 0 0 0 - - - NLGN4X - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaBND:0:7995:8002:0:0:0:0_MantaBND:0:7995:8002:0:0:0:1 BND chr4 81488319 81488323 - chrX 11732233 11732237 - 107 PASS 10 0 15 0 - - - NLGN4X 3' C4orf22 - - - - - - - - - - 0 - ENSG00000197826 chr4 81256874 81884910 1 - NA - - - - - -
Organoid_013 MantaBND:0:7995:8002:1:0:0:0_MantaBND:0:7995:8002:1:0:0:1 BND chr4 81488131 81488642 + chrX 11732435 11733011 + 107 PASS 11 0 0 0 - - - NLGN4X 5' C4orf22 - - - - - - - - - - 0 - ENSG00000197826 chr4 81256874 81884910 1 - NA - - - - - -
Organoid_013 MantaBND:0:7995:30937:0:0:0:1_MantaBND:0:7995:30937:0:0:0:0 BND chr20 38042687 38043266 + chrX 11731430 11731792 + 34 PASS 6 0 0 0 - - - NLGN4X - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaBND:0:7995:33293:0:0:0:1_MantaBND:0:7995:33293:0:0:0:0 BND chrX 11731411 11731824 + chrX 147680386 147681015 + 66 PASS 10 0 0 0 - - NLGN4X - - - 5' AFF2 - - - - - - - - 0 - - NA - - - ENSG00000155966 chrX 147582139 148082193 1 - - -
Organoid_013 MantaBND:0:10919:18192:0:0:0:1_MantaBND:0:10919:18192:0:0:0:0 BND chr11 22516794 22517254 + chr18 19709730 19710122 - 32 PASS 6 0 0 0 - - - - 5' RP11-34N19.1 - - - - - - - - - - 0 - ENSG00000255357 chr11 22513658 22524392 1 - NA - - - - - -
Organoid_013 MantaBND:0:13445:13447:1:0:0:1_MantaBND:0:13445:13447:1:0:0:0 BND chr2 11520706 11521032 + chr12 23675406 23675886 + 41 PASS 5 0 0 0 - - - SOX5 - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaBND:0:13585:13586:0:2:0:0_MantaBND:0:13585:13586:0:2:0:1 BND chr3 157966914 157966915 - chr22 29065911 29065912 + 77 PASS 11 0 9 0 - - - - 3' RSRC1 3' TTC28 - - - - - - - - 0 - ENSG00000174891 chr3 157823644 158263519 1 ENSG00000100154 chr22 28374004 29075853 -1 - - -
Organoid_013 MantaBND:0:20005:20006:0:0:0:1_MantaBND:0:20005:20006:0:0:0:0 BND chr12 24845166 24845171 - chr12 24846561 24846566 - 92 PASS 183 0 144 0 - - SOX5 SOX5 - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaBND:0:20649:20650:0:0:0:0_MantaBND:0:20649:20650:0:0:0:1 BND chr1 46008975 46008976 + chr12 22599313 22599314 + 42 PASS 11 0 12 0 - - - SOX5 - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaBND:0:35445:41706:0:2:0:1_MantaBND:0:35445:41706:0:2:0:0 BND chr8 36535035 36535038 + chr8 50452452 50452455 + 43 PASS 1 0 6 0 - - - - 3' RP11-962G15.1 3' RP11-738G5.2 - - - - - - - - 0 - ENSG00000253363 chr8 36394909 36636682 -1 ENSG00000253206 chr8 50448945 50466973 -1 - - -
Organoid_013 MantaBND:0:35445:42686:2:0:0:1_MantaBND:0:35445:42686:2:0:0:0 BND chr8 50275940 50276393 + chr8 50452416 50452904 + 42 PASS 5 0 0 0 - - - - - - 3' RP11-738G5.2 - - - - - - - - 0 - - NA - - - ENSG00000253206 chr8 50448945 50466973 -1 - - -
Organoid_013 MantaBND:0:35445:42686:4:0:0:1_MantaBND:0:35445:42686:4:0:0:0 BND chr8 50275513 50276060 - chr8 50452002 50452514 - 37 PASS 6 0 0 0 - - - - - - 5' RP11-738G5.2 - - - - - - - - 0 - - NA - - - ENSG00000253206 chr8 50448945 50466973 -1 - - -
Organoid_013 MantaBND:0:35445:43035:1:0:0:1_MantaBND:0:35445:43035:1:0:0:0 BND chr8 36558207 36558782 + chr8 50452390 50452907 + 45 PASS 6 0 0 0 - - - - 3' RP11-962G15.1 3' RP11-738G5.2 - - - - - - - - 0 - ENSG00000253363 chr8 36394909 36636682 -1 ENSG00000253206 chr8 50448945 50466973 -1 - - -
Organoid_013 MantaBND:0:35445:43419:0:0:0:0_MantaBND:0:35445:43419:0:0:0:1 BND chr8 15468163 15468164 - chr8 50452380 50452381 - 80 PASS 3 0 12 0 - - - - 3' TUSC3 5' RP11-738G5.2 FUSION- 5' of RP11-738G5.2 into 3' of TUSC3 - - FUSION- 5' of RP11-738G5.2 into 3' of TUSC3 - - 0 - ENSG00000104723 chr8 15274724 15624158 1 ENSG00000253206 chr8 50448945 50466973 -1 - - -
Organoid_013 MantaBND:0:35445:43419:2:0:0:1_MantaBND:0:35445:43419:2:0:0:0 BND chr8 15468226 15468630 + chr8 50452518 50452922 + 80 PASS 2 0 0 0 - - - - 5' TUSC3 3' RP11-738G5.2 FUSION+ 5' of TUSC3 into 3' of RP11-738G5.2 - - FUSION+ 5' of TUSC3 into 3' of RP11-738G5.2 - - 0 - ENSG00000104723 chr8 15274724 15624158 1 ENSG00000253206 chr8 50448945 50466973 -1 - - -
Organoid_013 MantaBND:0:37084:41706:0:2:0:0_MantaBND:0:37084:41706:0:2:0:1 BND chr8 36535259 36535260 + chr8 68743144 68743145 + 74 PASS 9 0 8 0 - - - - 3' RP11-962G15.1 - - - - - - - - - - 0 - ENSG00000253363 chr8 36394909 36636682 -1 - NA - - - - - -
Organoid_013 MantaBND:0:37364:42686:0:0:0:1_MantaBND:0:37364:42686:0:0:0:0 BND chr8 50275526 50275994 - chr8 55832715 55833140 - 35 PASS 6 0 0 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaBND:0:37712:39893:0:0:0:0_MantaBND:0:37712:39893:0:0:0:1 BND chr8 32550567 32550906 + chr8 40553589 40553968 + 47 PASS 7 0 0 0 - - - - 5' NRG1 3' ZMAT4 FUSION+ 5' of NRG1 into 3' of ZMAT4 - - FUSION+ 5' of NRG1 into 3' of ZMAT4 - - 0 - ENSG00000157168 chr8 31496902 32622548 1 ENSG00000165061 chr8 40388109 40755352 -1 - - -
Organoid_013 MantaBND:0:37712:42686:0:0:0:1_MantaBND:0:37712:42686:0:0:0:0 BND chr8 40553130 40553563 - chr8 50275658 50276072 - 81 PASS 7 0 0 0 - - - - 5' ZMAT4 - - - - - 5 - - - - 0 - ENSG00000165061 chr8 40388109 40755352 -1 - NA - - - - - -
Organoid_013 MantaBND:0:37712:42686:1:0:0:1_MantaBND:0:37712:42686:1:0:0:0 BND chr8 40553566 40554025 + chr8 50275930 50276544 + 81 PASS 9 0 0 0 - - - - 3' ZMAT4 - - - - - - - - - - 0 - ENSG00000165061 chr8 40388109 40755352 -1 - NA - - - - - -
Organoid_013 MantaBND:0:37712:44225:1:0:0:1_MantaBND:0:37712:44225:1:0:0:0 BND chr8 40553165 40553622 - chr8 92541942 92542444 - 48 PASS 6 0 0 0 - - - - 5' ZMAT4 - - - - - 5 - - - - 0 - ENSG00000165061 chr8 40388109 40755352 -1 - NA - - - - - -
Organoid_013 MantaBND:0:37825:42686:0:3:0:1_MantaBND:0:37825:42686:0:3:0:0 BND chr8 50276021 50276025 + chr8 130056304 130056308 + 62 PASS 1 0 15 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaBND:0:39893:42686:0:0:0:0_MantaBND:0:39893:42686:0:0:0:1 BND chr8 32550326 32551105 + chr8 50276064 50276507 + 56 PASS 7 0 0 0 - - - - 5' NRG1 - - - - - - - - - - 0 - ENSG00000157168 chr8 31496902 32622548 1 - NA - - - - - -
Organoid_013 MantaBND:0:39893:42686:3:0:0:0_MantaBND:0:39893:42686:3:0:0:1 BND chr8 32550080 32550498 - chr8 50275516 50275934 - 56 PASS 2 0 0 0 - - - - 3' NRG1 - - - - - - - - - - 0 - ENSG00000157168 chr8 31496902 32622548 1 - NA - - - - - -
Organoid_013 MantaBND:0:39893:44249:0:0:0:0_MantaBND:0:39893:44249:0:0:0:1 BND chr8 32550602 32550606 + chr8 130129801 130129805 + 57 PASS 0 0 10 0 - - - - 5' NRG1 - - - - - - - - - - 0 - ENSG00000157168 chr8 31496902 32622548 1 - NA - - - - - -
Organoid_013 MantaBND:0:40997:42686:0:0:0:0_MantaBND:0:40997:42686:0:0:0:1 BND chr8 36723805 36724251 + chr8 50275922 50276349 + 50 PASS 7 0 0 0 - - - - 5' KCNU1 - - - - - 2 - - - - 0 - ENSG00000215262 chr8 36641842 36793646 1 - NA - - - - - -
Organoid_013 MantaBND:0:41706:42936:0:0:0:0_MantaBND:0:41706:42936:0:0:0:1 BND chr8 36534542 36535023 - chr8 130055843 130056218 - 70 PASS 10 0 0 0 - - - - 5' RP11-962G15.1 - - - - - 1 - - - - 0 - ENSG00000253363 chr8 36394909 36636682 -1 - NA - - - - - -
Organoid_013 MantaBND:0:42554:42686:0:0:0:1_MantaBND:0:42554:42686:0:0:0:0 BND chr8 50276053 50276442 + chr8 77979412 77979977 + 53 PASS 10 0 0 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaBND:0:42572:43035:0:0:0:1_MantaBND:0:42572:43035:0:0:0:0 BND chr8 36557993 36557995 + chr8 79996288 79996290 + 69 PASS 1 0 14 0 - - - - 3' RP11-962G15.1 - - - - - - - - - - 0 - ENSG00000253363 chr8 36394909 36636682 -1 - NA - - - - - -
Organoid_013 MantaBND:0:42572:44107:0:2:0:1_MantaBND:0:42572:44107:0:2:0:0 BND chr8 77685326 77685329 - chr8 79996112 79996115 - 71 PASS 3 0 11 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaBND:0:43522:44225:0:0:0:1_MantaBND:0:43522:44225:0:0:0:0 BND chr8 55811557 55812163 + chr8 92542462 92542908 + 33 PASS 6 0 0 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaBND:1323:4:4:0:1:0:0_MantaBND:1323:4:4:0:1:0:1 BND chr2 223859916 223859917 + chr2 223860010 223860011 + 40 PASS 4 0 9 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaBND:5784:0:1:0:0:0:0_MantaBND:5784:0:1:0:0:0:1 BND chr1 83856348 83856846 + chr7 76476434 76476770 - 50 PASS 7 0 0 0 - - - - - - 3' UPK3B - - - - - - - - 0 - - NA - - - ENSG00000243566 chr7 76139745 76648340 1 - - -
Organoid_013 MantaBND:10871:1:3:0:0:0:1_MantaBND:10871:1:3:0:0:0:0 BND chr6 143560435 143560439 + chr22 41936837 41936841 + 48 PASS 2 0 5 0 - - - - 5' AIG1 3' POLR3H FUSION+ 5' of AIG1 into 3' of POLR3H - 4 FUSION+ 5' of AIG1 into 3' of POLR3H - - 0 - ENSG00000146416 chr6 143381633 143661441 1 ENSG00000100413 chr22 41921808 41940610 -1 - - -
Organoid_013 MantaBND:10871:5:6:0:2:0:1_MantaBND:10871:5:6:0:2:0:0 BND chr1 180253415 180253418 + chr6 143466440 143466443 - 47 PASS 5 0 2 0 - - - - - - 3' AIG1 - - - - - - - - 0 - - NA - - - ENSG00000146416 chr6 143381633 143661441 1 - - -
Organoid_013 MantaBND:10871:6:7:0:0:0:1_MantaBND:10871:6:7:0:0:0:0 BND chr6 143465622 143465623 - chr22 41727456 41727457 - 45 PASS 3 0 4 0 - - - - 3' AIG1 3' ZC3H7B - - - - - - - - 0 - ENSG00000146416 chr6 143381633 143661441 1 ENSG00000100403 chr22 41697526 41756151 1 - - -
Organoid_013 MantaBND:18953:0:1:0:1:0:1_MantaBND:18953:0:1:0:1:0:0 BND chr2 36245841 36245842 - chr7 64113626 64113627 - 30 PASS 2 0 2 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaBND:31664:0:1:0:1:0:1_MantaBND:31664:0:1:0:1:0:0 BND chr2 224944423 224944426 + chr4 12085489 12085492 - 34 PASS 3 0 3 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaBND:32087:0:1:0:0:0:0_MantaBND:32087:0:1:0:0:0:1 BND chr2 229924743 229924744 - chr11 123839050 123839051 + 63 PASS 9 0 5 0 - - - - 5' PID1 - - - - - - - - - - 0 - ENSG00000153823 chr2 229715242 230136001 -1 - NA - - - - - -
Organoid_013 MantaBND:32087:0:2:0:0:0:1_MantaBND:32087:0:2:0:0:0:0 BND chr2 229925028 229925031 + chr11 123486910 123486913 - 80 PASS 13 0 9 0 - - - - 3' PID1 3' GRAMD1B - - - - - - - - 0 - ENSG00000153823 chr2 229715242 230136001 -1 ENSG00000023171 chr11 123396344 123498482 1 - - -
Organoid_013 MantaBND:33161:0:1:0:0:0:1_MantaBND:33161:0:1:0:0:0:0 BND chr3 2025965 2025966 + chr19 32098472 32098473 - 54 PASS 4 0 5 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaBND:33161:1:2:0:1:0:1_MantaBND:33161:1:2:0:1:0:0 BND chr3 2023058 2023062 - chr19 32098620 32098624 + 48 PASS 1 0 6 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaBND:33161:1:3:0:0:0:0_MantaBND:33161:1:3:0:0:0:1 BND chr19 32098621 32098626 - chr19 32108479 32108484 - 50 PASS 2 0 8 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaBND:33161:3:6:0:0:0:1_MantaBND:33161:3:6:0:0:0:0 BND chr3 2070171 2070175 - chr19 32108476 32108480 + 43 PASS 4 0 2 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaBND:33161:5:6:0:1:0:1_MantaBND:33161:5:6:0:1:0:0 BND chr3 2070469 2070470 + chr19 32049221 32049222 + 31 PASS 3 0 2 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaBND:43547:8:12:0:0:0:0_MantaBND:43547:8:12:0:0:0:1 BND chr8 83620016 83620021 + chr8 87817341 87817346 + 79 PASS 11 0 8 0 - - - - - - 5' RP11-386D6.2 - - - - - - - - 0 - - NA - - - ENSG00000253778 chr8 87778163 87830786 1 - - -
Organoid_013 MantaBND:46866:0:1:0:0:0:1_MantaBND:46866:0:1:0:0:0:0 BND chr4 6636265 6636272 - chr11 65522283 65522290 - 31 PASS 2 0 2 0 - - - - - - 3' RP11-770G2.2 - - - - - - - - 0 - - NA - - - ENSG00000255557 chr11 65513200 65539056 1 - - -
Organoid_013 MantaBND:49230:0:1:0:0:0:1_MantaBND:49230:0:1:0:0:0:0 BND chr4 39843936 39843938 + chr4 60776804 60776806 + 53 PASS 6 0 3 0 - - - - 3' PDS5A - - - - - - - - - - 0 - ENSG00000121892 chr4 39824483 39979576 -1 - NA - - - - - -
Organoid_013 MantaBND:49241:0:1:0:0:0:1_MantaBND:49241:0:1:0:0:0:0 BND chr4 40117501 40117502 - chr4 60797719 60797720 - 68 PASS 5 0 7 0 - - - - 3' N4BP2 - - - - - - - - - - 0 - ENSG00000078177 chr4 40058446 40159872 1 - NA - - - - - -
Organoid_013 MantaBND:49409:0:1:0:0:0:1_MantaBND:49409:0:1:0:0:0:0 BND chr4 41995435 41995436 + chr4 43378399 43378400 + 51 PASS 3 0 3 0 - - - - 5' SLC30A9 - - - - - - - - - - 0 - ENSG00000014824 chr4 41992489 42092474 1 - NA - - - - - -
Organoid_013 MantaBND:49497:0:1:0:0:0:0_MantaBND:49497:0:1:0:0:0:1 BND chr4 43258744 43258746 - chr4 43526740 43526742 - 65 PASS 6 0 6 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaBND:52731:0:1:0:0:0:1_MantaBND:52731:0:1:0:0:0:0 BND chr4 91282197 91282199 - chr4 91295463 91295465 - 67 PASS 7 0 7 0 - - CCSER1 CCSER1 3' CCSER1 3' CCSER1 INTERNL PROB INV OR TDUP - - INTERNL PROB INV OR TDUP - - 0 - ENSG00000184305 chr4 91048686 92523064 1 ENSG00000184305 chr4 91048686 92523064 1 - - -
Organoid_013 MantaBND:59823:0:1:0:0:0:1_MantaBND:59823:0:1:0:0:0:0 BND chr4 189612623 189612627 + chr12 73046878 73046882 + 51 PASS 5 0 5 0 - - - - - - 5' TRHDE - - - - - - - 6 0 - - NA - - - ENSG00000072657 chr12 72481046 73059422 1 - - -
Organoid_013 MantaBND:60948:0:1:0:0:0:0_MantaBND:60948:0:1:0:0:0:1 BND chr5 11122698 11122699 - chr5 11130192 11130193 - 32 PASS 3 0 5 0 - - - - 5' CTNND2 5' CTNND2 INTERNL PROB INV OR TDUP - 9 INTERNL PROB INV OR TDUP - 9 0 - ENSG00000169862 chr5 10971952 11904155 -1 ENSG00000169862 chr5 10971952 11904155 -1 - - -
Organoid_013 MantaBND:63142:0:1:0:0:0:1_MantaBND:63142:0:1:0:0:0:0 BND chr5 38416523 38416526 + chr12 25058656 25058659 + 51 PASS 11 0 19 0 - - - SOX5 5' EGFLAM - - - - - 1 - - - - 0 - ENSG00000164318 chr5 38258511 38465123 1 - NA - - - - - -
Organoid_013 MantaBND:63142:0:1:1:0:0:0_MantaBND:63142:0:1:1:0:0:1 BND chr5 38416356 38416360 - chr12 25059359 25059363 + 42 PASS 9 0 8 0 - - - SOX5 3' EGFLAM - - - - - - - - - - 0 - ENSG00000164318 chr5 38258511 38465123 1 - NA - - - - - -
Organoid_013 MantaBND:63442:0:1:0:0:0:1_MantaBND:63442:0:1:0:0:0:0 BND chr5 43356147 43356152 + chr5 44020012 44020017 + 57 PASS 8 0 4 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaBND:68852:0:1:0:0:0:1_MantaBND:68852:0:1:0:0:0:0 BND chr5 133279247 133279249 - chr5 136196163 136196165 - 59 PASS 7 0 8 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaBND:71608:0:1:0:0:0:1_MantaBND:71608:0:1:0:0:0:0 BND chr5 174331778 174331781 + chr5 174332793 174332796 + 47 PASS 9 0 3 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaBND:71619:0:1:0:0:0:1_MantaBND:71619:0:1:0:0:0:0 BND chr5 174307107 174307110 - chr5 174335601 174335604 - 88 PASS 13 0 12 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaBND:71785:0:1:0:0:0:1_MantaBND:71785:0:1:0:0:0:0 BND chr5 177039044 177039049 + chr5 177041400 177041405 + 98 PASS 26 0 18 0 - - - - 5' RP11-1277A3.1 5' RP11-1277A3.1 INTERNL PROB INV OR TDUP - - INTERNL PROB INV OR TDUP - - 0 - ENSG00000247679 chr5 177038254 177046755 1 ENSG00000247679 chr5 177038254 177046755 1 - - -
Organoid_013 MantaBND:71902:0:1:0:1:0:1_MantaBND:71902:0:1:0:1:0:0 BND chr5 178196091 178196092 - chr10 216144 216145 - 152 PASS 25 0 18 0 - - - - 5' AACSP1 3' ZMYND11 FUSION+ 5' of AACSP1 into 3' of ZMYND11 - - FUSION+ 5' of AACSP1 into 3' of ZMYND11 - - 0 - ENSG00000250420 chr5 178191862 178245436 -1 ENSG00000015171 chr10 180405 300577 1 - - -
Organoid_013 MantaBND:71971:0:1:0:1:0:1_MantaBND:71971:0:1:0:1:0:0 BND chr5 178451000 178451001 + chr10 547597 547598 + 72 PASS 8 0 4 0 - - - - 5' ZNF879 3' DIP2C FUSION+ 5' of ZNF879 into 3' of DIP2C - - FUSION+ 5' of ZNF879 into 3' of DIP2C - - 0 - ENSG00000234284 chr5 178450753 178462065 1 ENSG00000151240 chr10 320130 735683 -1 - - -
Organoid_013 MantaBND:76864:0:3:0:0:0:1_MantaBND:76864:0:3:0:0:0:0 BND chr6 62739086 62739521 + chr12 31231639 31232241 + 61 PASS 12 0 0 0 - - - - 3' KHDRBS2 5' DDX11 FUSION- 5' of DDX11 into 3' of KHDRBS2 - - FUSION- 5' of DDX11 into 3' of KHDRBS2 - - 0 - ENSG00000112232 chr6 62389865 62996132 -1 ENSG00000013573 chr12 31226779 31257725 1 - - -
Organoid_013 MantaBND:76864:0:4:0:0:0:0_MantaBND:76864:0:4:0:0:0:1 BND chr6 62739093 62739095 + chr13 23261682 23261684 - 92 PASS 1 0 26 0 - - - - 3' KHDRBS2 - - - - - - - - - - 0 - ENSG00000112232 chr6 62389865 62996132 -1 - NA - - - - - -
Organoid_013 MantaBND:76864:3:5:0:0:0:1_MantaBND:76864:3:5:0:0:0:0 BND chr12 31231937 31231942 + chr13 23261805 23261810 + 108 PASS 20 0 25 0 - - - - 5' DDX11 - - - - - - - - - - 0 - ENSG00000013573 chr12 31226779 31257725 1 - NA - - - - - -
Organoid_013 MantaBND:85772:0:1:0:0:0:1_MantaBND:85772:0:1:0:0:0:0 BND chr7 17471399 17471403 + chr7 20056769 20056773 + 69 PASS 12 0 6 0 - - - - 5' AC019117.1 3' AC005062.2 FUSION+ 5' of AC019117.1 into 3' of AC005062.2 - - FUSION+ 5' of AC019117.1 into 3' of AC005062.2 - - 0 - ENSG00000236318 chr7 17414491 17506288 1 ENSG00000243004 chr7 19958604 20180076 -1 - - -
Organoid_013 MantaBND:85772:1:2:0:0:0:1_MantaBND:85772:1:2:0:0:0:0 BND chr7 20049498 20049501 - chr7 20056831 20056834 - 69 PASS 15 0 9 0 - - - - 5' AC005062.2 5' AC005062.2 INTERNL PROB INV OR TDUP - 1 INTERNL PROB INV OR TDUP - 1 0 - ENSG00000243004 chr7 19958604 20180076 -1 ENSG00000243004 chr7 19958604 20180076 -1 - - -
Organoid_013 MantaBND:88872:0:9:1:0:0:1_MantaBND:88872:0:9:1:0:0:0 BND chr7 62342025 62342316 - chr11 54848432 54848746 - 33 PASS 6 0 0 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaBND:93093:0:1:0:0:0:0_MantaBND:93093:0:1:0:0:0:1 BND chr7 117768397 117768398 - chr7 128880316 128880317 - 59 PASS 9 0 7 0 - - - - - - 3' AHCYL2 - - - - - - - - 0 - - NA - - - ENSG00000158467 chr7 128864864 129070052 1 - - -
Organoid_013 MantaBND:94884:0:2:1:0:0:0_MantaBND:94884:0:2:1:0:0:1 BND chr7 141013280 141013281 - chr7 141256147 141256148 - 49 PASS 4 0 5 0 - - - - 3' TMEM178B 3' AGK - - - - - - - - 0 - ENSG00000261115 chr7 140774032 141180180 1 ENSG00000006530 chr7 141250989 141355044 1 - - -
Organoid_013 MantaBND:96693:0:1:0:0:0:0_MantaBND:96693:0:1:0:0:0:1 BND chr8 3237336 3237341 - chr8 77856152 77856157 - 54 PASS 6 0 7 0 - - - - 5' CSMD1 - - - - - 4 - - - - 0 - ENSG00000183117 chr8 2792875 4852494 -1 - NA - - - - - -
Organoid_013 MantaBND:96700:0:1:0:0:0:1_MantaBND:96700:0:1:0:0:0:0 BND chr8 3292293 3292296 - chr8 65647310 65647313 - 121 PASS 16 0 26 0 - - - - 5' CSMD1 5' CYP7B1 - - - 4 - - - - 0 - ENSG00000183117 chr8 2792875 4852494 -1 ENSG00000172817 chr8 65500320 65711318 -1 - - -
Organoid_013 MantaBND:96704:0:1:0:0:0:1_MantaBND:96704:0:1:0:0:0:0 BND chr8 3339535 3339539 + chr8 5705527 5705531 + 182 PASS 32 0 26 0 - - - - 3' CSMD1 - - - - - - - - - - 0 - ENSG00000183117 chr8 2792875 4852494 -1 - NA - - - - - -
Organoid_013 MantaBND:96716:0:1:0:0:0:1_MantaBND:96716:0:1:0:0:0:0 BND chr8 3290361 3290362 + chr8 130044758 130044759 + 136 PASS 19 0 25 0 - - - - 3' CSMD1 - - - - - - - - - - 0 - ENSG00000183117 chr8 2792875 4852494 -1 - NA - - - - - -
Organoid_013 MantaBND:96768:0:1:0:0:0:0_MantaBND:96768:0:1:0:0:0:1 BND chr8 3887369 3887375 - chr8 64900362 64900368 - 147 PASS 28 0 17 0 - - - - 5' CSMD1 5' RP11-32K4.1 - - - - - - - 1 0 - ENSG00000183117 chr8 2792875 4852494 -1 ENSG00000253554 chr8 64599737 65281115 -1 - - -
Organoid_013 MantaBND:100875:0:1:0:0:0:0_MantaBND:100875:0:1:0:0:0:1 BND chr8 65428760 65428761 + chr8 85341429 85341430 + 130 PASS 27 0 23 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaBND:101056:2:3:0:0:0:0_MantaBND:101056:2:3:0:0:0:1 BND chr8 77857278 77857279 - chr8 77864526 77864527 - 70 PASS 7 0 12 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaBND:101644:0:1:0:0:0:0_MantaBND:101644:0:1:0:0:0:1 BND chr8 77865571 77865574 - chr8 78192254 78192257 - 78 PASS 16 0 4 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaBND:102865:0:1:0:0:0:0_MantaBND:102865:0:1:0:0:0:1 BND chr8 96747643 96747644 - chr8 117128042 117128043 - 148 PASS 30 0 21 0 - - - - 3' KB-1047C11.2 5' LINC00536 FUSION- 5' of LINC00536 into 3' of KB-1047C11.2 - - FUSION- 5' of LINC00536 into 3' of KB-1047C11.2 - - 0 - ENSG00000253773 chr8 96216684 96822364 1 ENSG00000249917 chr8 116962736 117337297 -1 - - -
Organoid_013 MantaBND:119491:0:1:0:0:0:0_MantaBND:119491:0:1:0:0:0:1 BND chr10 74048790 74049096 - chr17 41168670 41169323 + 49 PASS 7 0 0 0 - - - - - - 3' VAT1 - - - - - - - - 0 - - NA - - - ENSG00000108828 chr17 41166622 41177140 -1 - - -
Organoid_013 MantaBND:126048:0:1:0:0:0:0_MantaBND:126048:0:1:0:0:0:1 BND chr11 33799954 33799955 + chr11 40070291 40070292 + 45 PASS 4 0 4 0 - - None - 5' RP11-646J21.6 - - - - - - - - - - 0 - ENSG00000255272 chr11 33797734 33801041 1 - NA - - - - - -
Organoid_013 MantaBND:128550:0:1:0:0:0:0_MantaBND:128550:0:1:0:0:0:1 BND chr11 71504826 71505381 - chr11 72235051 72235522 - 40 PASS 6 0 0 0 - - - - 3' FAM86C1 - - - - - - - - - - 0 - ENSG00000158483 chr11 71498556 71512282 1 - NA - - - - - -
Organoid_013 MantaBND:133025:0:1:0:0:0:1_MantaBND:133025:0:1:0:0:0:0 BND chr12 4745490 4746149 + chr12 4748995 4749706 + 57 PASS 11 0 0 0 - - - - 3' AKAP3 3' AKAP3 INTERNL PROB INV OR TDUP - - INTERNL PROB INV OR TDUP - - 0 - ENSG00000111254 chr12 4724674 4758213 -1 ENSG00000111254 chr12 4724674 4758213 -1 - - -
Organoid_013 MantaBND:133025:0:1:0:0:0:1_MantaBND:133025:0:1:0:0:0:0 BND chr12 4745490 4746149 + chr12 4748995 4749706 + 57 PASS 11 0 0 0 - - - - 3' AKAP3 5' RP11-500M8.7 FUSION- 5' of RP11-500M8.7 into 3' of AKAP3 - - FUSION- 5' of RP11-500M8.7 into 3' of AKAP3 - - 0 - ENSG00000111254 chr12 4724674 4758213 -1 ENSG00000272921 chr12 4714110 4771809 1 - - -
Organoid_013 MantaBND:133025:0:1:0:0:0:1_MantaBND:133025:0:1:0:0:0:0 BND chr12 4745490 4746149 + chr12 4748995 4749706 + 57 PASS 11 0 0 0 - - - - 5' RP11-500M8.7 3' AKAP3 FUSION+ 5' of RP11-500M8.7 into 3' of AKAP3 - - FUSION+ 5' of RP11-500M8.7 into 3' of AKAP3 - - 0 - ENSG00000272921 chr12 4714110 4771809 1 ENSG00000111254 chr12 4724674 4758213 -1 - - -
Organoid_013 MantaBND:133025:0:1:0:0:0:1_MantaBND:133025:0:1:0:0:0:0 BND chr12 4745490 4746149 + chr12 4748995 4749706 + 57 PASS 11 0 0 0 - - - - 5' RP11-500M8.7 5' RP11-500M8.7 INTERNL PROB INV OR TDUP - - INTERNL PROB INV OR TDUP - - 0 - ENSG00000272921 chr12 4714110 4771809 1 ENSG00000272921 chr12 4714110 4771809 1 - - -
Organoid_013 MantaBND:133025:0:2:0:0:0:0_MantaBND:133025:0:2:0:0:0:1 BND chr12 4745751 4745756 - chr12 6402194 6402199 - 83 PASS 11 0 6 0 - - - - 3' RP11-500M8.7 - - - - - - - - - - 0 - ENSG00000272921 chr12 4714110 4771809 1 - NA - - - - - -
Organoid_013 MantaBND:133025:0:2:0:0:0:0_MantaBND:133025:0:2:0:0:0:1 BND chr12 4745751 4745756 - chr12 6402194 6402199 - 83 PASS 11 0 6 0 - - - - 5' AKAP3 - - - - - 2 - - - - 0 - ENSG00000111254 chr12 4724674 4758213 -1 - NA - - - - - -
Organoid_013 MantaBND:134325:0:1:0:0:0:1_MantaBND:134325:0:1:0:0:0:0 BND chr12 21559627 21559628 - chr12 21562400 21562401 - 191 PASS 109 0 105 0 - - SOX5 SOX5 5' SLCO1A2 5' SLCO1A2 INTERNL PROB INV OR TDUP - - INTERNL PROB INV OR TDUP - - 0 - ENSG00000084453 chr12 21417534 21572528 -1 ENSG00000084453 chr12 21417534 21572528 -1 - - -
Organoid_013 MantaBND:134417:0:1:0:0:0:1_MantaBND:134417:0:1:0:0:0:0 BND chr12 22037022 22037024 - chr12 25398481 25398483 - 82 PASS 93 0 65 0 - - SOX5 SOX5 3' RP11-729I10.2 - - - - - - - - - - 0 - ENSG00000257022 chr12 21980144 22040891 1 - NA - - - - - -
Organoid_013 MantaBND:134417:0:1:0:0:0:1_MantaBND:134417:0:1:0:0:0:0 BND chr12 22037022 22037024 - chr12 25398481 25398483 - 82 PASS 93 0 65 0 - - SOX5 SOX5 5' ABCC9 - - - - - 2 - - - - 0 - ENSG00000069431 chr12 21950335 22094336 -1 - NA - - - - - -
Organoid_013 MantaBND:134579:0:1:0:0:0:1_MantaBND:134579:0:1:0:0:0:0 BND chr12 23246069 23246072 + chr12 23246972 23246975 + 34 PASS 16 0 20 0 - - SOX5 SOX5 5' RP11-114G22.1 5' RP11-114G22.1 INTERNL PROB INV OR TDUP - 7 INTERNL PROB INV OR TDUP - 7 0 - ENSG00000256995 chr12 22852793 23327057 1 ENSG00000256995 chr12 22852793 23327057 1 - - -
Organoid_013 MantaBND:134662:0:1:0:0:0:1_MantaBND:134662:0:1:0:0:0:0 BND chr12 23802545 23802546 + chr12 23803838 23803839 + 57 PASS 40 0 34 0 - - SOX5 SOX5 - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaBND:134765:0:1:0:0:0:1_MantaBND:134765:0:1:0:0:0:0 BND chr12 24662633 24662636 - chr12 24663826 24663829 - 59 PASS 116 1 84 0 - - SOX5 SOX5 5' RP11-444D3.1 5' RP11-444D3.1 INTERNL PROB INV OR TDUP - - INTERNL PROB INV OR TDUP - - 0 - ENSG00000255864 chr12 24366190 24715524 -1 ENSG00000255864 chr12 24366190 24715524 -1 - - -
Organoid_013 MantaBND:141931:0:1:0:0:0:1_MantaBND:141931:0:1:0:0:0:0 BND chr12 123802971 123802976 - chr16 88378957 88378962 + 79 PASS 14 0 11 0 - - - - 5' SBNO1 - - - - - - - - - - 0 - ENSG00000139697 chr12 123773656 123849390 -1 - NA - - - - - -
Organoid_013 MantaBND:141931:0:2:0:0:0:1_MantaBND:141931:0:2:0:0:0:0 BND chr12 123803458 123803463 + chr12 124085599 124085604 + 114 PASS 15 0 13 0 - - - - 3' SBNO1 - - - - - - - - - - 0 - ENSG00000139697 chr12 123773656 123849390 -1 - NA - - - - - -
Organoid_013 MantaBND:141931:0:2:2:0:0:0_MantaBND:141931:0:2:2:0:0:1 BND chr12 123803518 123803519 - chr12 124085739 124085740 - 114 PASS 2 0 14 0 - - - - 5' SBNO1 - - - - - - - - - - 0 - ENSG00000139697 chr12 123773656 123849390 -1 - NA - - - - - -
Organoid_013 MantaBND:141931:2:2:4:0:0:0_MantaBND:141931:2:2:4:0:0:1 BND chr12 124085904 124085905 - chr12 124086129 124086130 - 77 PASS 12 0 18 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaBND:141931:2:3:0:0:0:0_MantaBND:141931:2:3:0:0:0:1 BND chr12 124086650 124086651 + chr16 88004095 88004096 - 79 PASS 22 1 20 0 - - - - 5' DDX55 3' BANP FUSION+ 5' of DDX55 into 3' of BANP - - FUSION+ 5' of DDX55 into 3' of BANP - - 0 - ENSG00000111364 chr12 124086624 124105488 1 ENSG00000172530 chr16 87982850 88110924 1 - - -
Organoid_013 MantaBND:165162:0:1:0:0:0:1_MantaBND:165162:0:1:0:0:0:0 BND chr16 56647549 56647552 + chr16 56720017 56720020 + 83 PASS 11 0 9 0 - - - - - - 5' RP11-343H19.2 - - - - - - - - 0 - - NA - - - ENSG00000259827 chr16 56716382 56721719 1 - - -
Organoid_013 MantaBND:165162:0:2:0:0:0:1_MantaBND:165162:0:2:0:0:0:0 BND chr16 56647542 56647545 - chr16 57077195 57077198 - 77 PASS 9 0 9 0 - - - - - - 3' NLRC5 - - - - - - - - 0 - - NA - - - ENSG00000140853 chr16 57023397 57117443 1 - - -
Organoid_013 MantaBND:167573:0:1:0:0:0:0_MantaBND:167573:0:1:0:0:0:1 BND chr17 31140 31555 + chr17 1085680 1086172 + 84 PASS 10 0 0 0 - - - - - - 3' ABR - - - - - - - - 0 - - NA - - - ENSG00000159842 chr17 906758 1132315 -1 - - -
Organoid_013 MantaBND:167573:0:1:0:0:0:0_MantaBND:167573:0:1:0:0:0:1 BND chr17 31140 31555 + chr17 1085680 1086172 + 84 PASS 10 0 0 0 - - - - - - 5' AC016292.1 - - - - - - - - 0 - - NA - - - ENSG00000235361 chr17 1085187 1088380 1 - - -
Organoid_013 MantaBND:167581:0:1:0:0:0:1_MantaBND:167581:0:1:0:0:0:0 BND chr17 33853 33856 - chr17 1087055 1087058 - 71 PASS 10 0 8 0 - - - - 5' AC108004.2 5' ABR - - - - - - - 1 0 - ENSG00000273172 chr17 33615 41378 -1 ENSG00000159842 chr17 906758 1132315 -1 - - -
Organoid_013 MantaBND:167581:0:1:0:0:0:1_MantaBND:167581:0:1:0:0:0:0 BND chr17 33853 33856 - chr17 1087055 1087058 - 71 PASS 10 0 8 0 - - - - 5' AC108004.2 3' AC016292.1 FUSION+ 5' of AC108004.2 into 3' of AC016292.1 - - FUSION+ 5' of AC108004.2 into 3' of AC016292.1 - - 0 - ENSG00000273172 chr17 33615 41378 -1 ENSG00000235361 chr17 1085187 1088380 1 - - -
Organoid_013 MantaBND:169415:0:1:0:0:0:1_MantaBND:169415:0:1:0:0:0:0 BND chr17 25598608 25598611 + chr17 25943617 25943620 + 69 PASS 11 0 6 0 - - - - - - 5' KSR1 - - - - - - - 11 0 - - NA - - - ENSG00000141068 chr17 25783670 25953461 1 - - -
Organoid_013 MantaBND:169421:0:1:0:0:0:1_MantaBND:169421:0:1:0:0:0:0 BND chr17 25748628 25748632 - chr17 25954466 25954470 - 58 PASS 6 0 4 0 - - - - 3' TBC1D3P5 3' AC015688.3 - - - - - - - - 0 - ENSG00000266433 chr17 25744716 25758649 1 ENSG00000266728 chr17 25950390 25967803 1 - - -
Organoid_013 MantaBND:179734:0:1:0:0:0:1_MantaBND:179734:0:1:0:0:0:0 BND chr19 14507251 14507630 + chr19 14877489 14878010 + 34 PASS 14 1 0 0 - - - - 5' CD97 3' EMR2 FUSION+ 5' of CD97 into 3' of EMR2 - 2 FUSION+ 5' of CD97 into 3' of EMR2 - - 0 - ENSG00000123146 chr19 14491313 14519537 1 ENSG00000127507 chr19 14843205 14889353 -1 - - -
Organoid_013 MantaDEL:0:4695:4696:0:0:0 DEL chr3 60410783 60410785 + chr3 60646640 60646642 - 63 PASS 6 0 4 0 - - FHIT FHIT - - - - - - - - - - - - 1 RP11-641C17.4 - NA - - - - NA - - - - - -
Organoid_013 MantaDEL:0:35445:42686:3:0:0 DEL chr8 50275991 50276529 + chr8 50451982 50452526 - 67 PASS 12 0 0 0 - - - - - - 5' RP11-738G5.2 - - - - - - - - 1 RP11-738G5.1 - NA - - - ENSG00000253206 chr8 50448945 50466973 -1 - - -
Organoid_013 MantaDEL:0:36098:42655:0:1:0 DEL chr8 77776521 77776522 + chr8 77860617 77860618 - 69 PASS 2 0 12 0 - - - - - - - - - - - - - - - - 1 RP11-48D4.2 - NA - - - - NA - - - - - -
Organoid_013 MantaDEL:0:37041:37712:0:0:0 DEL chr8 40553686 40553689 + chr8 130129702 130129705 - 82 PASS 8 0 14 0 - - - - 3' ZMAT4 - - - - - - - - - - 1206 C8orf59,GS1-251I9.2,GS1-251I9.4,CA13,RN7SL777P,CTD-2114J12.1,MIR4661,snoU13,RP11-122C21.1,RN7SKP231,RP11-122C21.4,MRPS16P1,GS1-5L10.1,RP11-777J24.1,RP11-700E23.3,RP11-567J20.3,RP11-700E23.2,RP11-770E5.1,RP11-700E23.1,RP11-587H10.1,RP11-567J20.2,RP11-587H10.2,AC026904.1,AC091096.1,RP11-100L22.1,RP11-567J20.1,RP11-770E5.3,RP11-770E5.2,RP11-22C8.1,RP11-10H3.1,RP11-100L22.2,RN7SKP294,RFPL4AP7,RP11-100L22.4,RP11-738G5.1,RP11-100L22.3,PSAT1P1,CTD-3239E11.2,RP11-109P6.2,RP11-401N18.1,RP11-759A9.1,IRF5P1,RP11-759A9.2,LINC00535,CYCSP22,RP11-139G7.1,SNORA7,RP11-401H2.1,RP11-119N19.1,RP11-11C20.1,RP11-11C20.3,RP11-110G21.2,RP11-110G21.1,RP11-546K22.3,RP11-546K22.1,RP11-388K12.1,RP11-388K12.2,RNA5SP274,ZNF317P1,CTD-2006H14.2,RP11-10N23.2,RP11-10N23.4,RP11-10N23.5,RP3-388N13.3,RP3-388N13.2,MIR378D2,PSMA2P2,RPL34P18,AC105081.1,KB-1184D12.1,KB-1247B1.1,RPS4XP10,RP11-267M23.3,RP11-267M23.4,RP11-267M23.6,RP11-267M23.5,RP11-267M23.7,RP11-219B4.5,RP11-22C11.2,RP11-22C11.1,RP11-219B4.6,KB-1090H4.2,Y_RNA,KB-1608C10.2,RP11-546K22.2,RP11-26M5.3,RP11-26M5.2,RP11-1023P17.2,RPL34P17,CTD-3214K23.1,RP11-182E14.1,AC009800.1,AC016113.1,RP11-347C18.5,RP11-162D9.1,RP11-347C18.1,RP11-162D9.3,RP11-347C18.3,RP11-347C18.4,RNU6-1209P,RP11-1081M5.2,MIR3150A,RP11-1081M5.1,RP11-400K9.3,RP11-400K9.4,RP11-400K9.1,RP11-400K9.2,RP11-463C14.1,RP11-1070A24.2,RP11-1070A24.1,RNU6-1331P,RP11-30L15.4,RP11-30L15.6,TDGF1P5,RNU6ATAC32P,RP11-626A5.2,RP11-320N21.2,RP11-767C6.1,KB-1047C11.2,KB-1047C11.1,RP11-328L11.1,RP11-90D11.1,RNU6-690P,AC116154.1,RP11-31K23.1,RP11-31K23.2,RP11-44N17.1,RP11-44N17.2,KB-1043D8.8,KB-1043D8.6,CA1,KB-1448A5.1,RNU6-1172P,KB-1958F4.2,KB-1958F4.1,KB-1000E4.2,U3,KB-1683C8.1,RNU7-177P,KB-1907C4.2,RNU105C,RN7SL250P,RP11-53M11.4,RP11-53M11.2,KB-1589B1.4,RP11-53M11.3,SUMO2P18,RPS23P1,KB-1208A12.3,SNORA72,RNU6-703P,RNU6-914P,KB-1458E12.1,RP11-56A10.1,KB-1517D11.2,KB-1517D11.4,RNU6-748P,KB-1205A7.2,KB-1205A7.1,RPL19P14,RP11-550I15.1,RP11-44N12.4,SBF1P1,MRP63P7,RP11-628E19.2,AC100817.1,RNA5SP265,RP11-318K15.2,SNORA1,AC018607.1,RN7SL798P,RP11-446E9.2,RN7SL323P,RP11-446E9.1,SNORD54,CTA-397H3.3,NPM1P21,SNORA3,RP11-140I16.3,RP11-140I16.2,SDR16C6P,RP11-17A4.2,SEPT10P1,LINC00968,RP11-17A4.3,RP11-17A4.1,RP11-17A4.4,RP11-33E15.1,CA3,RN7SKP85,RP11-44N12.5,RP11-44N12.2,RP11-410L14.2,AC104986.1,RP11-410L14.1,CTD-2340D6.2,CTD-2340D6.1,AP004290.1,AP004289.2,AP004289.1,RNU6-13P,MIR599,AC032027.1,MIR875,CA2,RN7SL350P,RNA5SP266,AC018442.1,RP11-402L5.1,RP11-402L5.2,SNORD77,MIR1273A,RP11-513O17.2,RP11-316J7.4,KB-1991G8.1,KB-173C10.2,MIR4471,KB-173C10.1,KB-1615E4.2,KB-1615E4.3,GAPDHP62,KB-1083B1.1,RNU6-1092P,AP001205.1,RNU6ATAC41P,RPS20P23,RNU4-83P,RPS26P6,AC025674.1,RP11-521I2.3,RN7SL685P,RP11-302J23.1,KB-1460A1.1,RP11-513O17.1,KB-1460A1.2,RP11-513O17.3,LINC00588,RN7SKP249,KB-1460A1.3,KB-1460A1.5,RNU6-596P,RP11-756K15.2,KB-1410C5.5,KB-1410C5.1,KB-1410C5.2,KB-1410C5.3,RNU7-67P,KB-1410C5.4,NACAP1,DUXAP2,KB-1930G5.3,RN7SL563P,KB-1930G5.4,KB-1562D12.1,KB-1562D12.2,KB-1562D12.3,KB-1107E3.1,MIR5680,KB-1073A2.1,KB-431C1.4,SUMO2P19,KB-431C1.5,KB-1980E6.2,RNU6ATAC8P,HSPE1P14,RPS12P15,RNU6-1224P,POU5F1P2,KB-1042C11.1,REXO1L1P,AP003356.1,KB-1732A1.1,REXO1L11P,REXO1L10P,ATP6V0D2,KB-1254G8.1,KB-1507C5.3,RPL5P24,AP003354.1,KB-1507C5.4,NPM1P52,KB-1639H6.2,MTND1P5,KB-1639H6.7,KB-1639H6.8,AP003550.1,KB-1639H6.4,MIR3151,PSKH2,RP11-318M2.2,RPL30P10,RP11-246K15.1,RNU7-174P,RP11-388G22.1,CTD-2339F6.1,RP11-44D19.1,RP11-1112C15.1,RP11-1112C15.2,RP11-648L3.2,RP11-648L3.1,RP11-716D16.1,RP11-114M5.1,RP11-114M5.3,AC068522.4,RNU4-50P,RP11-328K2.1,RP11-25K19.1,RP11-318M2.3,RP11-1C8.6,RNU6-1011P,RP11-1C8.5,RP11-1C8.7,RP11-1C8.4,RP11-5A11.1,SNORA51,RP11-5A11.2,SLC7A13,RNA5SP267,RP11-379I19.2,RP11-771F20.1,AP001572.1,RP11-379I19.1,AP003471.1,AP003471.2,AP003471.3,RP11-379I19.3,MIR548A3,NDUFA5P2,AC012564.1,RP11-200A13.1,RP11-200A13.3,RP11-960H2.2,RP11-200A13.2,RP11-574O7.1,RP11-960H2.1,TMCC1P1,RP11-273P3.1,RP11-642D21.2,RP11-642D21.1,RP11-27P7.1,SLC2A13P1,RP11-152P17.1,RP11-163N6.2,PDCL3P1,AC022555.1,RNU6-1202P,RP11-91I20.4,RP11-91I20.3,RP11-91I20.2,RP11-91I20.1,WWP1,RP11-33I11.2,RP11-33I11.3,AC022182.1,AC022182.2,AC022182.3,NPM1P6,RP11-787D18.2,RP11-787D18.1,KRT8P3,RN7SKP97,MIR4470,RP11-280G9.1,RP11-705O24.1,RP11-152P17.2,RP11-152P17.3,SLC16A14P1,RP11-778D12.2,RP11-395G23.3,RP11-649G15.2,TAGLN2P1,RP11-705O24.3,RP11-705O24.2,RNU7-84P,HMGB1P46,AP000428.1,RP11-705O24.4,PGAM1P13,CTD-2571E19.1,RNA5SP275,NRBF2P4,AP001331.1,CTD-2571E19.3,RP11-35G22.1,RPS17P14,RP11-577N1.1,RP11-577N1.2,RP11-25P11.2,RP11-790J24.1,RP11-790J24.2,RP11-1084E5.1,RP11-122A21.2,RP11-419L20.2,SNORD112,RP11-25D10.2,RNU2-67P,RP11-25D10.1,RP11-696P8.2,RP11-403P13.1,RP11-211F2.1,CTD-2544L4.1,RP11-238I10.1,KB-1299A7.2,KB-1299A7.1,RP11-946L20.1,RP11-946L20.2,RP11-946L20.4,RP11-114O8.1,EEF1A1P37,RP11-1101K5.1,RP11-1101K5.2,RP11-58O3.1,RP11-58O3.2,RNU4-37P,AC024996.1,RPL30P16,MIR2053,RP11-709P2.1,AC107890.1,RP11-267L5.1,RP11-393K19.1,RP11-192P9.1,AF178030.2,LINC00536,XRCC6P4,RP11-442A17.2,RP11-659E9.2,RP11-659E9.4,RP11-16E18.1,YTHDF3-AS1,RP11-16E18.3,RN7SL135P,CTD-3046C4.1,IFITM8P,RP11-45K10.2,RP11-573J24.1,RN7SKP135,RP11-32K4.1,RP11-579E24.2,RP11-579E24.1,COX6CP8,LINC00966,MIR124-2,RP11-21C4.4,RP11-21C4.5,RNA5SP276,AC103863.1,AF130343.1,RP11-536K17.1,RAD21-AS1,MIR3610,RN7SL228P,RP11-1059L18.1,RP11-654G14.1,RN7SL826P,SNORA31,RPS10P16,RPS26P35,RNU6-12P,RP11-278I4.1,RP11-278I4.2,MAL2,RP11-4K16.2,SNORA32,RP11-775B15.2,RP11-775B15.3,RP11-99I9.2,RN7SKP153,RN7SL396P,KB-1471A8.1,RNA5SP277,RP11-760H22.2,CTC-820M8.1,RP11-713M15.1,RP11-713M15.2,RP11-369K17.1,AC011626.1,RP11-369K17.2,AC027238.1,RPL35AP19,AC022909.1,HAS2-AS1,RP11-3G20.1,RP11-3G20.2,RP11-785H20.1,RP11-398G24.2,MRPS36P3,RP11-94A24.1,RP11-96B2.1,LINC01151,RP11-973F15.2,AC016405.1,RP11-44N11.2,RP11-44N11.3,RP11-44N11.1,AC016405.2,RP11-557C18.4,RP11-557C18.3,RNY4P5,HMGB1P19,RP11-539E17.5,RP11-539E17.3,FAM83A-AS1,MIR4663,UBA52P5,RNU6-628P,RP11-468O2.1,RNU6-875P,MIR548D1,DUTP2,IMPDH1P6,RP11-174I12.2,RN7SKP155,CTD-2552K11.2,RP11-245A18.1,FER1L6-AS1,RP11-959I15.4,FER1L6-AS2,RP11-959I15.1,ARF1P3,RP11-37N22.1,RNU6-756P,RP11-383J24.1,RP11-383J24.2,RP11-383J24.6,RNF139-AS1,RP11-158K1.3,RP11-532M24.1,RP11-1082L8.4,MIR4662A,RP11-1082L8.3,LINC00964,RP11-1082L8.1,RMDN1,RP11-465K16.1,RNU6-356P,MIR548AO,RPS29P2,CTD-3080F16.3,RNU6-895P,SNORD65,RP11-21C4.1,RP11-15G16.1,KRT18P37,RP11-1D12.1,RP11-1D12.2,RP11-360L9.4,RP11-89A16.1,RPL31P41,RP11-678D18.1,CTD-3025N20.2,CTD-3025N20.3,RP11-707M3.3,CTD-2532N20.1,AC084082.3,LINC00967,RP11-346I3.4,RP11-346I3.2,RNU6-1324P,PTTG3P,SNHG6,RP11-360L9.7,RP11-360L9.8,MIR486,RP11-930P14.1,SNORD87,RP11-409C19.2,AC109335.1,RNA5SP268,RP11-453N18.1,RP11-7F18.2,RP11-7F18.1,RP11-343B22.2,AC022861.1,RP11-396J6.1,NDUFS5P6,RP11-403D15.2,RP11-930P14.2,RP11-403D15.1,RPL31P40,RN7SL149P,RPS15AP25,AC090571.1,RNA5SP269,RP11-589C21.1,RP11-865I6.2,RP11-589C21.2,RP11-600K15.1,RP11-589C21.6,RNU7-102P,GS1-44D20.1,RP11-589C21.5,RP11-21C17.1,RP11-744J10.3,RP11-231D20.2,RP11-744J10.2,RN7SKP29,RP11-102F4.2,RP11-159H10.4,RP11-159H10.3,RPL5P23,RP11-1007J8.1,RP11-159H10.1,RP11-503E24.2,RN7SL675P,RNA5SP270,SDCBPP2,RP11-503E24.3,RP11-412B14.1,SUMO2P20,RNU1-101P,RP11-152C15.1,RP11-412B14.2,RN7SL806P,BTF3P12,MIR4469,RNU1-124P,RP11-598P20.3,RP11-333A23.1,Metazoa_SRP,RP11-333A23.4,VN1R46P,RP11-333A23.2,RP11-726G23.2,CPNE3,RN7SL19P,RP11-326E22.1,TRAPPC2P2,AC099805.1,RP11-1144P22.1,RP11-281N10.1,U8,AC104012.1,RP11-726G23.11,RPS20P20,RP11-142A23.1,RP11-656G20.1,RP11-1082L8.2,RP11-6D1.3,KIAA0196-AS1,RN7SL329P,RP11-550A5.2,RN7SL590P,RP11-136O12.2,RP11-697B24.1,RNA5SP271,RNU6-442P,RP11-351E7.2,LINC00861,RP11-351E7.1,HAUS1P3,SOD1P3,RP11-622O11.4,KNOP1P5,RP11-313C15.1,RP11-622O11.5,AC090573.1,RFPL4AP5,RP11-65D17.1,RP11-103H7.1,RP11-103H7.2,RNU6-869P,RP11-103H7.3,RP11-103H7.5,RP11-89K10.1,RP11-89K10.2,RNU11-4P,RP11-351C8.1,PCAT1,RP11-359P18.2,PCAT2,PRNCR1,RP11-726G23.3,CASC19,CCAT1,AFG3L2P1,CASC8,RP11-726G23.7,RP11-726G23.10,RP11-382A18.3,RP11-382A18.2,RP11-726G23.8,CASC11,POTEA,PVT1,RP11-1145L24.1,RP11-531A24.3,RNU6-285P,MIR1205,RP11-531A24.7,RNU1-106P,RP11-531A24.5,RNU4-25P,MIR1207,RP11-956J14.1,MIR1208,RP11-956J14.2,RN7SKP226,RP11-434I12.5,RP11-89M16.1,RP11-434I12.2,RP11-434I12.3,AC068570.1,RP11-434I12.4,STAU2-AS1,RP11-181D18.4,RP11-116B19.2,VENTXP6,RP11-463D19.1,RP11-99A14.1,GYG1P1,RPS20P21,RP11-367E12.4,RNU6-1300P,RP11-6I2.3,RNU6-104P,RP11-726G23.12,AC022616.1,RP11-726G23.6,RN7SKP41,CNGB3,RP11-359P18.1,RP11-359P18.7,RP11-359P18.8,SNX18P27,RP11-359P18.5,CYP4F44P,RP11-359P18.6,AC134698.1,RP11-643N23.2,RP11-643N23.1,AC113134.1,HSPA8P13,ASNSP1,RP11-790L1.3,ASNSP4,RP11-101E19.8,TRIM60P15,LINC00293,MTND1P7,RNU6-656P,RP11-101E19.4,RPS3AP32,MTND6P20,RNU6-1197P,RP11-6I2.4,RP1-16A9.1,CTD-2320G14.2,MIR5681A,RP11-730G20.2,RP11-730G20.1,RP11-758M4.4,RP11-758M4.3,RP11-3N13.2,RP11-300E4.2,RP11-697M17.2,CASC9,HIGD1AP6,PKMP4,AC016194.1,RNU2-54P,RP11-706J10.2,LINC01109,LINC01111,ZFHX4-AS1,RP11-115I9.1,MRPL9P1,RP11-48D4.2,hsa-mir-3149,HIGD1AP18,AC105242.1,RP11-38H17.1,RP11-91P17.1,RNU6-1220P,RP11-594N15.2,RP11-594N15.3,RP11-578O24.2,PRKRIRP7,RP11-79H23.3,AC009941.1,RP11-1114I9.1,RP11-758H6.1,RPL3P9,RP11-27N21.3,RP11-26J3.1,RNU7-85P,RP11-26J3.3,RP11-92K15.3,RP11-92K15.1,RN7SL41P,MIR5708,RP11-941H19.1,RP11-941H19.3,RP11-941H19.2,SNORA20,RP11-775E10.1,RNU6-1213P,RP11-48B3.3,RP11-48B3.4,RPSAP47,RP11-48B3.2,RNU2-71P,SLC25A51P3,RN7SL107P,CKS1BP7,RNU11-6P,RN7SL308P,HMGB1P41,RP11-172E10.1,RP11-1149M10.1,RP11-1149M10.2,RP11-363E6.1,RP11-101E19.7,RP11-350F16.1,RP11-350F16.2,MAPK6PS4,UBE2HP1,RN7SKP32,RP11-363E6.4,AC026241.1,RP11-1134I14.2,RP11-363E6.3,RP11-157I4.4,RP11-257P3.3,FTH1P11,IMPA1P,RNU6-819P,RPL10AP2,NIPA2P4,RPS26P34,SLC10A5P1,RP13-923O23.6,HNRNPA1P36,NDUFA5P12,RP11-1134I14.4,RP11-1134I14.8,ATP6V1G1P2,RP11-1134I14.6,IGLV8OR8-1,RP11-697N18.3,RP11-697N18.4,RP11-697N18.1,RP11-697N18.2,RNU6-665P,AC103686.1,RNU6-519P,RP11-769N21.2,CTD-2210A23.1,RNU6-295P,RPL29P19,RP11-354A14.1,RP11-99H20.1,HNRNPA1P4,RP11-653B10.1,RP11-731N10.1,CTD-2272D18.1,CTD-2272D18.2,RP11-296C13.1,RP11-813B8.1,RP11-51M18.1,RP11-120I21.2,TPM3P3,RP11-120I21.3,AC103816.1,RNU6-1040P,RP11-509P12.1,RP11-98H4.1,RP11-98H4.4,ACTBP6,IGJP1,RP11-146E23.2,RP11-219B4.7,RP11-219B4.3,RP11-317J10.2,RP11-317J10.4,RP11-59O2.1,REXO1L8P,REXO1L3P,REXO1L12P,REXO1L9P,REXO1L2P,CTA-392E5.1,RP11-216N21.1,RP11-216N21.2,CTD-3118D11.2,CTD-3118D11.3,CTD-2284J15.1,NTAN1P2,SLC2A3P4,RP11-298P6.5,GOLGA2P1,AC013751.1,UBE2Q2P10,RP11-386D6.1,RP11-386D6.2,RP11-386D6.3,AF121898.3,AF121898.2,AF121898.1,SOX5P,CTB-118P15.2,RP11-586K2.1,RNA5SP272,RP11-69I13.1,RP11-642C5.1,RP11-255L13.1,KRT8P4,RP11-37B2.1,COX6B1P6,RNU6-925P,LINC00534,AF070718.1,RNA5SP273,AB015752.3,LINC01030,RP11-68L18.1,RP11-68L18.2,RP11-662G23.1,GS1-251I9.3,CNBD1,DCAF4L2,MMP16,RIPK2,OSGIN2,NBN,DECR1,CALB1,TMEM64,NECAB1,C8orf88,TMEM55A,OTUD6B,LRRC69,SLC26A7,RUNX1T1,SFRP1,GOLGA7,GINS4,TRIQK,AC117834.1,C8orf87,AC016885.1,FAM92A1,AGPAT6,NKX6-3,ANK1,RBM12B,RBM12B-AS1,TMEM67,PDP1,CDH17,GEM,RAD54B,FSBP,KIAA1429,KAT6A,AP3M2,AC023632.1,ESRP1,PLAT,DPY19L4,INTS8,IKBKB,CCNE2,NDUFAF6,POLB,TP53INP1,PLEKHF2,C8orf37,GDF6,UQCRB,DKK4,VDAC3,MTERFD1,PTDSS1,SLC20A2,SMIM19,CHRNB3,CHRNA6,SDC2,THAP1,RNF170,CPQ,HOOK3,TSPYL5,MTDH,LAPTM4B,RP11-598P20.5,MATN2,FNTA,POMK,HGSNAT,RPL30,C8orf47,SPIDR,HRSP12,POP1,NIPAL2,STK3,KCNS2,OSR2,CEBPD,VPS13B,PRKDC,MCM4,COX6C,RGS22,FBXO43,POLR2K,SPAG1,UBE2V2,EFCAB1,SNAI2,C8orf22,RP11-738G5.2,RNF19A,SNTG1,ANKRD46,SNX31,PABPC1,PXDNL,PCMTD1,AC090186.1,ST18,FAM150A,RB1CC1,NPBWR1,OPRK1,ATP6V1H,YWHAZ,ZNF706,RGS20,GRHL2,NCALD,TCEA1,RRM2B,LYPLA1,UBR5,MRPL15,SOX17,RP1,XKR4,RP11-386G21.1,RP11-386G21.2,TMEM68,KB-1980E6.3,ODF1,KLF10,TGS1,AZIN1,LYN,KB-1507C5.2,RPS20,MOS,PLAG1,ATP6V1C1,C8orf56,BAALC,CHCHD7,FZD6,CTHRC1,SLC25A32,SDR16C5,PENK,DCAF13,IMPAD1,FAM110B,UBXN2B,CYP7A1,SDCBP,RIMS2,NSMAF,DPYS,DCSTAMP,LRP12,RP11-127H5.1,ZFPM2,TOX,CA8,RAB2A,CHD7,OXR1,CLVS1,ABRA,ANGPT1,ASPH,RSPO2,EIF3E,EMC2,TMEM74,TRHR,NUDCD1,ENY2,NKAIN3,PKHD1L1,GGH,TTPA,YTHDF3,BHLHE22,EBAG9,CYP7B1,ARMC1,MTFR1,SYBU,PDE7A,RP11-422N16.3,KCNV1,DNAJC5B,TRIM55,CSMD3,CRH,RRS1,ADHFE1,C8orf46,MYBL1,RP11-67H2.1,TRPS1,EIF3H,UTP23,VCPIP1,C8orf44-SGK3,C8orf44,RAD21,SGK3,MCMDC2,AARD,SLC30A8,TCF24,PPP1R42,MED30,EXT1,COPS5,SAMD12,AC023590.1,TNFRSF11B,COLEC10,NOV,CSPP1,ENPP2,TAF2,DSCC1,ARFGEF1,DEPTOR,COL14A1,CPA6,PREX2,MRPL13,MTBP,RP11-664D7.4,SNTB1,C8orf34,HAS2,ZHX2,DERL1,TBC1D31,SULF1,FAM83A,C8orf76,SLCO5A1,ZHX1-C8ORF76,ZHX1,AC090574.1,PRDM14,NCOA2,ATAD2,TRAM1,AC120194.1,RP11-382J12.1,WDYHV1,LACTB2,XKR9,FBXO32,EYA1,KLHL38,ANXA13,FAM91A1,FER1L6,TMEM65,TRMT12,RNF139,RP11-1102P16.1,TATDN1,RP11-383H13.1,MSC,TRPA1,KCNB2,TERF1,NDUFB9,SBSPON,MTSS1,RPL7,RDH10,ZNF572,SQLE,STAU2,KIAA0196,RP11-463D19.2,UBE2W,NSMCE2,TRIB1,FAM84B,POU5F1B,TCEB1,MYC,TMEM75,TMEM70 ENSG00000165061 chr8 40388109 40755352 -1 - NA - - - - - -
Organoid_013 MantaDEL:0:37084:43654:0:2:0 DEL chr8 68743132 68743134 + chr8 130131741 130131743 - 55 PASS 2 0 9 0 - - - - - - - - - - - - - - - - 812 C8orf59,GS1-251I9.2,GS1-251I9.4,CA13,RN7SL777P,CTD-2114J12.1,MIR4661,snoU13,RP11-122C21.1,RN7SKP231,RP11-122C21.4,MRPS16P1,GS1-5L10.1,RP11-777J24.1,RP11-700E23.3,RP11-700E23.2,RP11-700E23.1,RP11-587H10.1,RP11-587H10.2,AC091096.1,RP11-100L22.1,RP11-100L22.2,RP11-100L22.4,RP11-100L22.3,CTD-3239E11.2,IRF5P1,LINC00535,RP11-388K12.1,RP11-388K12.2,RNA5SP274,ZNF317P1,CTD-2006H14.2,RP11-10N23.2,RP11-10N23.4,RP11-10N23.5,RP3-388N13.3,RP3-388N13.2,MIR378D2,PSMA2P2,RPL34P18,AC105081.1,KB-1184D12.1,KB-1247B1.1,RPS4XP10,RP11-267M23.3,RP11-267M23.4,RP11-267M23.6,RP11-267M23.5,RP11-267M23.7,RP11-219B4.5,RP11-22C11.2,RP11-22C11.1,RP11-219B4.6,KB-1090H4.2,Y_RNA,KB-1608C10.2,RP11-347C18.5,RP11-347C18.1,RP11-347C18.3,RP11-347C18.4,RNU6-1209P,MIR3150A,RP11-320N21.2,KB-1047C11.2,KB-1047C11.1,RP11-328L11.1,RP11-90D11.1,RNU6-690P,AC116154.1,RP11-31K23.1,RP11-31K23.2,RP11-44N17.1,RP11-44N17.2,KB-1043D8.8,KB-1043D8.6,CA1,KB-1448A5.1,RNU6-1172P,KB-1958F4.2,KB-1958F4.1,KB-1000E4.2,U3,KB-1683C8.1,RNU7-177P,KB-1907C4.2,KB-1589B1.4,SUMO2P18,RPS23P1,KB-1208A12.3,SNORA72,RNU6-703P,RNU6-914P,KB-1458E12.1,KB-1517D11.2,KB-1517D11.4,RNU6-748P,KB-1205A7.2,KB-1205A7.1,RPL19P14,RP11-44N12.4,MRP63P7,CA3,RN7SKP85,RP11-44N12.5,RP11-44N12.2,RP11-410L14.2,AC104986.1,RP11-410L14.1,CTD-2340D6.2,CTD-2340D6.1,AP004290.1,AP004289.2,AP004289.1,MIR599,MIR875,CA2,RN7SL350P,AC018442.1,RP11-402L5.1,RP11-402L5.2,SNORD77,MIR1273A,RP11-316J7.4,KB-1991G8.1,KB-173C10.2,MIR4471,KB-173C10.1,KB-1615E4.2,KB-1615E4.3,GAPDHP62,KB-1083B1.1,RNU6-1092P,AP001205.1,RNU6ATAC41P,RPS20P23,RNU4-83P,RPS26P6,RP11-521I2.3,RN7SL685P,RP11-302J23.1,KB-1460A1.1,KB-1460A1.2,RN7SKP249,KB-1460A1.3,KB-1460A1.5,KB-1410C5.5,KB-1410C5.1,KB-1410C5.2,KB-1410C5.3,RNU7-67P,KB-1410C5.4,NACAP1,DUXAP2,KB-1930G5.3,RN7SL563P,KB-1930G5.4,KB-1562D12.1,KB-1562D12.2,KB-1562D12.3,KB-1107E3.1,MIR5680,KB-1073A2.1,KB-431C1.4,SUMO2P19,KB-431C1.5,KB-1980E6.2,RNU6ATAC8P,HSPE1P14,RPS12P15,RNU6-1224P,POU5F1P2,KB-1042C11.1,REXO1L1P,AP003356.1,KB-1732A1.1,REXO1L11P,REXO1L10P,ATP6V0D2,KB-1254G8.1,KB-1507C5.3,RPL5P24,AP003354.1,KB-1507C5.4,NPM1P52,KB-1639H6.2,MTND1P5,KB-1639H6.7,KB-1639H6.8,AP003550.1,KB-1639H6.4,MIR3151,PSKH2,RP11-318M2.2,RP11-318M2.3,RP11-1C8.6,RNU6-1011P,RP11-1C8.5,RP11-1C8.7,RP11-1C8.4,RP11-5A11.1,RP11-5A11.2,SLC7A13,RP11-771F20.1,AP001572.1,AP003471.1,AP003471.2,AP003471.3,MIR548A3,NDUFA5P2,AC012564.1,RP11-200A13.1,RP11-200A13.3,RP11-200A13.2,RP11-574O7.1,TMCC1P1,RP11-273P3.1,RP11-642D21.2,RP11-642D21.1,RP11-152P17.1,WWP1,RP11-152P17.2,RP11-152P17.3,SLC16A14P1,RP11-778D12.2,RP11-395G23.3,RP11-649G15.2,TAGLN2P1,RNU7-84P,HMGB1P46,AP000428.1,PGAM1P13,RNA5SP275,NRBF2P4,AP001331.1,RP11-35G22.1,RPS17P14,RP11-25P11.2,RP11-790J24.1,RP11-790J24.2,RP11-1084E5.1,RP11-122A21.2,RP11-419L20.2,SNORD112,RP11-25D10.2,RNU2-67P,RP11-25D10.1,RP11-696P8.2,RP11-403P13.1,RP11-211F2.1,CTD-2544L4.1,RP11-238I10.1,KB-1299A7.2,KB-1299A7.1,RP11-946L20.1,RP11-946L20.2,RP11-946L20.4,RP11-114O8.1,EEF1A1P37,RP11-1101K5.1,RP11-1101K5.2,RP11-58O3.1,RP11-58O3.2,RNU4-37P,AC024996.1,RPL30P16,MIR2053,RP11-709P2.1,AC107890.1,RP11-267L5.1,RP11-393K19.1,RP11-192P9.1,AF178030.2,LINC00536,RNA5SP276,AC103863.1,AF130343.1,RP11-536K17.1,RAD21-AS1,MIR3610,RN7SL228P,RP11-1059L18.1,RP11-654G14.1,RN7SL826P,SNORA31,RPS10P16,RPS26P35,RNU6-12P,RP11-278I4.1,RP11-278I4.2,MAL2,RP11-4K16.2,SNORA32,RP11-775B15.2,RP11-775B15.3,RP11-99I9.2,RN7SKP153,RN7SL396P,KB-1471A8.1,RNA5SP277,RP11-760H22.2,CTC-820M8.1,RP11-713M15.1,RP11-713M15.2,RP11-369K17.1,AC011626.1,RP11-369K17.2,AC027238.1,RPL35AP19,AC022909.1,HAS2-AS1,RP11-3G20.1,RP11-3G20.2,RP11-785H20.1,RP11-398G24.2,MRPS36P3,RP11-94A24.1,RP11-96B2.1,LINC01151,RP11-973F15.2,AC016405.1,RP11-44N11.2,RP11-44N11.3,RP11-44N11.1,AC016405.2,RP11-557C18.4,RP11-557C18.3,RNY4P5,HMGB1P19,RP11-539E17.5,RP11-539E17.3,FAM83A-AS1,MIR4663,UBA52P5,RNU6-628P,RP11-468O2.1,RNU6-875P,MIR548D1,DUTP2,IMPDH1P6,RP11-174I12.2,RN7SKP155,CTD-2552K11.2,RP11-245A18.1,FER1L6-AS1,RP11-959I15.4,FER1L6-AS2,RP11-959I15.1,ARF1P3,RP11-37N22.1,RNU6-756P,RP11-383J24.1,RP11-383J24.2,RP11-383J24.6,RNF139-AS1,RP11-158K1.3,RP11-532M24.1,RP11-1082L8.4,MIR4662A,RP11-1082L8.3,LINC00964,RP11-1082L8.1,RMDN1,NDUFS5P6,RP11-403D15.2,RP11-403D15.1,RPL31P40,RPS15AP25,RNA5SP269,RP11-865I6.2,RP11-600K15.1,RNU7-102P,GS1-44D20.1,RP11-21C17.1,RP11-744J10.3,RP11-744J10.2,RN7SKP29,RP11-102F4.2,RP11-159H10.4,RP11-159H10.3,RP11-159H10.1,RN7SL675P,RNA5SP270,SDCBPP2,SUMO2P20,RNU1-101P,RP11-152C15.1,BTF3P12,RP11-333A23.1,Metazoa_SRP,RP11-333A23.4,RP11-333A23.2,CPNE3,RN7SL19P,RP11-326E22.1,TRAPPC2P2,AC099805.1,RP11-1144P22.1,RP11-281N10.1,U8,AC104012.1,RPS20P20,RP11-142A23.1,RP11-656G20.1,RP11-1082L8.2,RP11-6D1.3,KIAA0196-AS1,RN7SL329P,RP11-550A5.2,RN7SL590P,RP11-136O12.2,RP11-697B24.1,RNA5SP271,RNU6-442P,RP11-351E7.2,LINC00861,RP11-351E7.1,HAUS1P3,SOD1P3,RP11-622O11.4,KNOP1P5,RP11-313C15.1,RP11-622O11.5,AC090573.1,RFPL4AP5,RP11-65D17.1,RP11-103H7.1,RP11-103H7.2,RNU6-869P,RP11-103H7.3,RP11-103H7.5,RP11-89K10.1,RP11-89K10.2,RNU11-4P,RP11-351C8.1,PCAT1,PCAT2,PRNCR1,CASC19,CCAT1,CASC8,RP11-382A18.3,RP11-382A18.2,CASC11,PVT1,RP11-1145L24.1,RP11-531A24.3,RNU6-285P,MIR1205,RP11-531A24.7,RNU1-106P,RP11-531A24.5,RNU4-25P,MIR1207,RP11-956J14.1,MIR1208,RP11-956J14.2,RN7SKP226,RP11-434I12.5,RP11-89M16.1,RP11-434I12.2,RP11-434I12.3,AC068570.1,RP11-434I12.4,STAU2-AS1,RP11-181D18.4,RP11-116B19.2,VENTXP6,RP11-463D19.1,RP11-99A14.1,GYG1P1,RPS20P21,RP11-367E12.4,RNU6-1300P,RP11-6I2.3,CNGB3,RPS3AP32,RNU6-1197P,RP11-6I2.4,RP1-16A9.1,CTD-2320G14.2,MIR5681A,RP11-730G20.2,RP11-730G20.1,RP11-758M4.4,RP11-758M4.3,RP11-3N13.2,RP11-300E4.2,RP11-697M17.2,CASC9,HIGD1AP6,PKMP4,AC016194.1,RNU2-54P,RP11-706J10.2,LINC01109,LINC01111,ZFHX4-AS1,RP11-115I9.1,MRPL9P1,RP11-48D4.2,hsa-mir-3149,HIGD1AP18,AC105242.1,RP11-38H17.1,RP11-91P17.1,RNU6-1220P,RP11-594N15.2,RP11-594N15.3,RP11-578O24.2,PRKRIRP7,RP11-79H23.3,AC009941.1,RP11-1114I9.1,RP11-758H6.1,RPL3P9,RP11-27N21.3,RP11-26J3.1,RNU7-85P,RP11-26J3.3,RP11-92K15.3,RP11-92K15.1,RN7SL41P,MIR5708,RP11-941H19.1,RP11-941H19.3,RP11-941H19.2,SNORA20,RP11-775E10.1,RNU6-1213P,RP11-48B3.3,RP11-48B3.4,RPSAP47,RP11-48B3.2,RNU2-71P,SLC25A51P3,RN7SL107P,CKS1BP7,RNU11-6P,RN7SL308P,HMGB1P41,RP11-172E10.1,RP11-1149M10.1,RP11-1149M10.2,RP11-363E6.1,UBE2HP1,RP11-363E6.4,RP11-363E6.3,RP11-157I4.4,RP11-257P3.3,FTH1P11,IMPA1P,NIPA2P4,RPS26P34,SLC10A5P1,RP13-923O23.6,HNRNPA1P36,RP11-354A14.1,RP11-99H20.1,HNRNPA1P4,RP11-653B10.1,RP11-731N10.1,CTD-2272D18.1,CTD-2272D18.2,RP11-296C13.1,RP11-813B8.1,RP11-51M18.1,RP11-120I21.2,TPM3P3,RP11-120I21.3,AC103816.1,RNU6-1040P,RP11-509P12.1,RP11-98H4.1,RP11-98H4.4,ACTBP6,IGJP1,RP11-146E23.2,RP11-219B4.7,RP11-219B4.3,RP11-317J10.2,RP11-317J10.4,RP11-59O2.1,REXO1L8P,REXO1L3P,REXO1L12P,REXO1L9P,REXO1L2P,CTA-392E5.1,RP11-216N21.1,RP11-216N21.2,CTD-3118D11.2,CTD-3118D11.3,CTD-2284J15.1,NTAN1P2,SLC2A3P4,RP11-298P6.5,GOLGA2P1,AC013751.1,UBE2Q2P10,RP11-386D6.1,RP11-386D6.2,RP11-386D6.3,AF121898.3,AF121898.2,AF121898.1,SOX5P,CTB-118P15.2,RP11-586K2.1,RNA5SP272,RP11-69I13.1,RP11-642C5.1,RP11-255L13.1,KRT8P4,RP11-37B2.1,COX6B1P6,RNU6-925P,LINC00534,AF070718.1,RNA5SP273,AB015752.3,LINC01030,RP11-68L18.1,RP11-68L18.2,RP11-662G23.1,GS1-251I9.3,CNBD1,DCAF4L2,MMP16,RIPK2,OSGIN2,NBN,DECR1,CALB1,TMEM64,NECAB1,C8orf88,TMEM55A,OTUD6B,LRRC69,SLC26A7,RUNX1T1,TRIQK,AC117834.1,C8orf87,AC016885.1,FAM92A1,RBM12B,RBM12B-AS1,TMEM67,PDP1,CDH17,GEM,RAD54B,FSBP,KIAA1429,AC023632.1,ESRP1,DPY19L4,INTS8,CCNE2,NDUFAF6,TP53INP1,PLEKHF2,C8orf37,GDF6,UQCRB,MTERFD1,PTDSS1,SDC2,CPQ,TSPYL5,MTDH,LAPTM4B,MATN2,RPL30,C8orf47,HRSP12,POP1,NIPAL2,STK3,KCNS2,OSR2,VPS13B,COX6C,RGS22,FBXO43,POLR2K,SPAG1,RNF19A,ANKRD46,SNX31,PABPC1,YWHAZ,ZNF706,GRHL2,NCALD,RRM2B,UBR5,KB-1980E6.3,ODF1,KLF10,AZIN1,KB-1507C5.2,ATP6V1C1,C8orf56,BAALC,FZD6,CTHRC1,SLC25A32,DCAF13,RIMS2,DPYS,DCSTAMP,LRP12,RP11-127H5.1,ZFPM2,OXR1,ABRA,ANGPT1,RSPO2,EIF3E,EMC2,TMEM74,TRHR,NUDCD1,ENY2,PKHD1L1,EBAG9,SYBU,RP11-422N16.3,KCNV1,CSMD3,RP11-67H2.1,TRPS1,EIF3H,UTP23,RAD21,AARD,SLC30A8,MED30,EXT1,SAMD12,AC023590.1,TNFRSF11B,COLEC10,NOV,ENPP2,TAF2,DSCC1,DEPTOR,COL14A1,PREX2,MRPL13,MTBP,RP11-664D7.4,SNTB1,C8orf34,HAS2,ZHX2,DERL1,TBC1D31,SULF1,FAM83A,C8orf76,SLCO5A1,ZHX1-C8ORF76,ZHX1,AC090574.1,PRDM14,NCOA2,ATAD2,TRAM1,AC120194.1,RP11-382J12.1,WDYHV1,LACTB2,XKR9,FBXO32,EYA1,KLHL38,ANXA13,FAM91A1,FER1L6,TMEM65,TRMT12,RNF139,RP11-1102P16.1,TATDN1,RP11-383H13.1,MSC,TRPA1,KCNB2,TERF1,NDUFB9,SBSPON,MTSS1,RPL7,RDH10,ZNF572,SQLE,STAU2,KIAA0196,RP11-463D19.2,UBE2W,NSMCE2,TRIB1,FAM84B,POU5F1B,TCEB1,MYC,TMEM75,TMEM70 - NA - - - - NA - - - - - -
Organoid_013 MantaDEL:0:37364:43419:0:1:0 DEL chr8 15468186 15468187 + chr8 55833122 55833123 - 56 PASS 0 0 9 0 - - - - 5' TUSC3 - - - - - - - - - - 664 PPAPDC1B,WHSC1L1,RP11-567J20.3,RP11-770E5.1,RNU6-1086P,RP11-16P20.2,RP11-567J20.2,MIR3622B,AC026904.1,RP11-16P20.3,RP11-567J20.1,RP11-770E5.3,snoU13,RNU6-1276P,RP11-770E5.2,RP11-22C8.1,RP11-1149M3.2,RP11-10H3.1,MIR4287,RN7SKP294,RFPL4AP7,RP11-597M17.3,RP11-597M17.2,RP11-738G5.1,PSAT1P1,RP11-597M17.1,RP11-109P6.2,RP11-380I10.2,RP11-401N18.1,RP11-759A9.1,RP11-380I10.3,RP11-759A9.2,RP11-380I10.4,RPL5P22,CYCSP22,RP11-181B11.1,RNU6-178P,RP11-139G7.1,RP11-181B11.2,SNORA7,RP11-401H2.1,MIR4288,RP11-119N19.1,RNA5SP259,EXTL3-AS1,RP11-11C20.1,RP11-11C20.3,RP11-110G21.2,RP11-110G21.1,RP11-662B19.2,RP11-662B19.1,HMBOX1-IT1,RNA5SP260,RP11-546K22.3,RP11-546K22.1,CTD-2647L4.4,CTD-2647L4.5,CTD-2647L4.1,RN7SL781P,HMGB1P23,AC084262.1,AC084262.2,AC084262.3,RP4-676L2.1,RP11-486M23.1,RP11-486M23.2,RPL17P33,RP11-546K22.2,LINC00589,RP11-26M5.3,AC145110.1,RP11-26M5.2,RP11-1023P17.2,RPL34P17,CTD-3214K23.1,RP11-182E14.1,AC009800.1,AC016113.1,RP11-162D9.1,RP11-162D9.3,RP11-1081M5.2,RP11-1081M5.1,RP11-400K9.3,RP11-400K9.4,RP11-400K9.1,RP11-400K9.2,RP11-463C14.1,RP11-1070A24.2,RP11-1070A24.1,RNU6-1331P,RP11-30L15.4,RP11-30L15.6,RP11-94H18.1,TDGF1P5,RNU6ATAC32P,RP11-626A5.2,RP11-767C6.1,RP11-94H18.2,RP11-489E7.1,FAM183CP,AC131254.1,MIR3148,MAP2K1P1,RNU6-1218P,RP11-489E7.4,RPS15AP24,RP11-51J9.5,RP11-51J9.4,RP11-51J9.6,HSPA8P11,CTD-2345M20.2,CTD-3107M8.1,CTD-3107M8.2,TUBBP1,RNU105C,RBPMS-AS1,RN7SL250P,RP11-53M11.4,RP11-53M11.2,RP11-53M11.3,CTD-2373N4.5,RNU5A-3P,RP11-56A10.1,RP11-550I15.1,UBXN8,LETM2,RP11-465K4.4,RP5-1009N12.1,RP11-293D9.2,SUMO2P16,RP11-363L24.3,RP11-363L24.2,RP11-566H8.3,RP11-566H8.2,RP11-566H8.1,RNA5SP261,NRG1-IT1,NRG1-IT2,RNA5SP262,RNA5SP263,NRG1-IT3,RP11-1002K11.1,RNU6-663P,RP11-11N9.4,MTND1P6,MTND2P32,RANP9,AC104037.1,RP11-451O18.1,RNU6-528P,RP11-722E23.2,RP11-359B20.1,SNORD13,RP11-359B20.5,SNORA70,RP11-10D7.5,RN7SL621P,RP11-317N12.1,RP11-10D7.2,RN7SL457P,VENTXP5,RP1-273G13.1,RP1-273G13.2,RP1-273G13.3,RP11-431M3.1,RP1-84O15.2,RP11-431M3.2,RP1-84O15.1,RP11-258J10.1,RP11-734J24.1,AC098612.1,LSM12P1,FGFR1,RP11-473J6.1,RP11-89M20.2,RP11-89M20.1,RN7SKP201,RP11-593P24.2,MTND6P19,RP11-593P24.3,RP11-139F9.1,RNU6-533P,RP11-593P24.4,RP11-962G15.1,RPL23P10,RNA5SP264,TPT1P8,AC090453.1,RP11-419C23.1,SMARCE1P4,RP11-527N22.1,RP11-527N22.2,RP11-150O12.1,RP11-150O12.2,RP11-150O12.6,RP11-150O12.5,RP11-150O12.3,RP11-150O12.4,RP11-346L1.2,RNU6-607P,RP11-863K10.2,RP11-863K10.4,RN7SL709P,AC144573.1,KB-1836B5.3,KB-1836B5.1,KB-1836B5.4,RP11-90P5.4,RP11-90P5.5,RP11-90P5.2,RP11-90P5.7,RP11-90P5.1,RP11-513D5.5,RP11-513D5.2,RP11-350N15.5,RP11-350N15.3,RP11-350N15.6,RP11-350N15.4,RPS20P22,RP11-675F6.3,RP11-675F6.4,RNF5P1,RP11-495O10.1,Y_RNA,RP11-723D22.2,RP11-723D22.3,CTD-2544N14.3,SNORD38,RPL3P10,RP11-1113C11.2,ADAM5,RP11-235P11.1,PPM1AP1,ADAM3A,RP11-77B22.1,RP11-77B22.2,RP11-447G11.1,MRPL49P2,RP11-13N12.2,RP11-13N12.1,RN7SL474P,RP11-468H14.2,RP11-468H14.1,RP11-242F4.2,ADAM24P,MIR548V,RP11-326L2.1,RNA5SP256,RP11-156K13.1,RP11-806O11.1,RP11-156K13.2,RP11-156K13.3,CTD-2547L16.1,CTD-2547L16.3,CTD-2547L16.2,NATP,RP11-685B14.1,RP11-685B14.3,RP11-161I2.1,RP11-122L4.1,RPL35P6,AC090420.1,AC123767.1,SNORA62,RP11-420B22.1,RP11-420B22.2,RP11-1080G15.1,CTD-2024D23.1,AC136365.1,KB-1582A10.1,KB-1582A10.2,RP11-44K6.3,RP11-1080G15.2,RP11-618M23.1,RP11-44K6.2,RP11-44K6.4,RP11-618M23.2,RP11-44K6.5,RP11-618M23.4,RP11-1105O14.1,AC100802.3,RP11-359E19.1,RP11-359E19.2,RP11-470M17.2,RPL30P9,RNU6-892P,LZTS1-AS1,CTA-392C11.1,RP11-563N12.2,RP11-404E12.1,U3,RP11-108E14.1,CTA-392C11.2,TMEM97P2,RP11-301G7.1,RP11-369E15.1,RP11-465K16.1,RNU6-356P,RP11-369E15.3,MIR548AO,RP11-369E15.4,RPS29P2,CTD-3080F16.3,RNU6-895P,SNORD65,RP11-369E15.2,RP11-421P23.1,RP11-15G16.1,KRT18P37,RP11-360L9.4,RP11-421P23.2,AC021613.1,RP11-24P4.1,AC009695.1,AC022716.1,OR6R2P,AC091171.1,AC105206.1,MIR320A,CTD-2530N21.4,CTD-2036J7.1,RNU6-336P,RP11-382J24.2,RP11-582J16.4,RP11-582J16.3,RP11-582J16.5,CTD-3247F14.2,RP11-459E5.1,RP11-360L9.7,RP11-360L9.8,MIR486,RP11-930P14.1,RP11-87E22.2,RP11-930P14.2,RN7SL149P,AC090571.1,SNORD112,RP11-589C21.1,RP11-589C21.2,RP11-589C21.6,RP11-589C21.5,RP11-231D20.2,RPL5P23,RP11-1007J8.1,RP11-503E24.2,RP11-503E24.3,RP11-412B14.1,RP11-87E22.1,RN7SL303P,RP11-875O11.1,RP11-412B14.2,RN7SL806P,MIR4469,RP11-875O11.2,RNU1-124P,RP11-598P20.3,RP11-875O11.3,RP11-1149O23.2,VN1R46P,RP11-1149O23.1,RP11-726G23.2,RP11-1149O23.3,RP11-1149O23.4,RP11-177H13.2,CTC-756D1.2,RP11-726G23.11,CTC-756D1.1,CTC-756D1.3,RNU4-71P,RP11-583M2.2,RP11-175E9.1,RP11-359P18.2,RP11-726G23.3,AFG3L2P1,RP11-726G23.7,RP11-726G23.10,RP11-726G23.8,POTEA,RP11-213G6.2,AC012119.1,RP11-175E9.2,SNORA67,RNU1-148P,RP11-203E8.1,RP11-624C23.1,RP11-561E1.1,GS1-72M22.1,NEFL,CTD-2168K21.2,CTD-2168K21.1,RP11-429O2.1,RN7SL651P,RP11-395I14.2,RP11-219J21.1,RP11-219J21.2,RP11-299D14.2,AC090103.1,RNA5SP258,RP11-98P2.1,SDAD1P1,RP11-14I17.2,RP11-14I17.1,RP11-14I17.3,RP11-1G11.2,RNU6-104P,RP11-726G23.12,RP11-384C12.1,AC022616.1,RP11-726G23.6,COX6B1P4,RP11-613H2.1,RN7SKP41,RP11-359P18.1,MIR548H4,RP11-359P18.7,RP11-359P18.8,SNX18P27,RP11-359P18.5,CYP4F44P,RP11-359P18.6,AC134698.1,RP11-643N23.2,RP11-643N23.1,AC113134.1,HSPA8P13,ASNSP1,RP11-790L1.3,ASNSP4,RP11-613H2.2,RP11-101E19.8,AC090150.1,RP11-521M14.1,GULOP,TRIM60P15,LINC00293,MTND1P7,RNU6-656P,RP11-101E19.4,MTND6P20,RP11-101E19.7,RP11-350F16.1,RP11-350F16.2,MAPK6PS4,RN7SKP32,AC026241.1,RP11-1134I14.2,C8orf86,RNU6-819P,RPL10AP2,NDUFA5P12,RP11-1134I14.4,RP11-1134I14.8,ATP6V1G1P2,RP11-1134I14.6,IGLV8OR8-1,RP11-697N18.3,RP11-697N18.4,RP11-697N18.1,RP11-697N18.2,RNU6-665P,AC103686.1,RNU6-519P,RP11-769N21.2,CTD-2210A23.1,RNU6-295P,RPL29P19,TACC1,PLEKHA2,MSR1,FGF20,MICU3,HTRA4,TM2D2,ZDHHC2,CNOT7,ADAM9,VPS37A,MTMR7,SLC7A2,ADAM32,PDGFRL,MTUS1,ADAM18,ADAM2,FGL1,PCM1,IDO1,IDO2,C8orf4,ZMAT4,ASAH1,SFRP1,GOLGA7,GINS4,NAT1,NAT2,PSD3,AGPAT6,SH2D4A,NKX6-3,CSGALNACT1,INTS10,ANK1,LPL,SLC18A1,ATP6V1B2,LZTS1,GFRA2,DOK2,XPO7,KAT6A,AP3M2,NPM2,PLAT,FGF17,DMTN,IKBKB,FAM160B2,NUDT18,HR,REEP4,POLB,LGI3,DKK4,SFTPC,VDAC3,BMP1,SLC20A2,SMIM19,CHRNB3,CHRNA6,THAP1,RNF170,HOOK3,RP11-598P20.5,FNTA,POMK,PHYHIP,POLR3D,HGSNAT,PIWIL2,SLC39A14,SPIDR,PPP3CC,SORBS3,CEBPD,PRKDC,PDLIM2,AC037459.4,C8orf58,MCM4,CCAR2,BIN3,UBE2V2,EFCAB1,EGR3,PEBP4,RHOBTB2,SNAI2,C8orf22,RP11-738G5.2,SNTG1,TNFRSF10B,PXDNL,PCMTD1,TNFRSF10C,TNFRSF10D,TNFRSF10A,CHMP7,R3HCC1,AC090186.1,LOXL2,ST18,ENTPD4,FAM150A,RB1CC1,SLC25A37,NPBWR1,OPRK1,AC051642.1,FP15737,NKX3-1,NKX2-6,STC1,ADAM28,ATP6V1H,RGS20,ADAMDEC1,ADAM7,TCEA1,NEFM,DOCK5,LYPLA1,MRPL15,SOX17,RP1,GNRH1,KCTD9,CDCA2,EBF2,PPP2R2A,BNIP3L,PNMA2,DPYSL2,ADRA1A,RP11-521M14.2,STMN4,TRIM35,PTK2B,CHRNA2,EPHX2,CLU,SCARA3,CCDC25,ESCO2,PBK,SCARA5,NUGGC,ELP3,PNOC,ZNF395,FBXO16,FZD3,EXTL3,INTS9,HMBOX1,KIF13B,DUSP4,TMEM66,LEPROTL1,MBOAT4,DCTN6,RBPMS,GTF2E2,SMIM18,GSR,PPP2CB,TEX15,PURG,WRN,NRG1,FUT10,TTI2,MAK16,RNF122,DUSP26,UNC5D,AC012215.1,KCNU1,ZNF703,RP11-863K10.7,ERLIN2,PROSC,GPR124,BRF2,RAB11FIP1,GOT1L1,ADRB3,EIF4EBP1,ASH2L,STAR,LSM1,BAG4,DDHD2 ENSG00000104723 chr8 15274724 15624158 1 - NA - - - - - -
Organoid_013 MantaDEL:0:39018:42655:0:0:0 DEL chr8 72307116 72307766 + chr8 77776105 77776462 - 52 PASS 7 0 0 0 - - - - - - - - - - - - - - - - 77 TRAPPC2P2,AC099805.1,RP11-1144P22.1,RP11-281N10.1,U8,AC104012.1,RPS20P20,RP11-142A23.1,RP11-656G20.1,RNA5SP271,RP11-351E7.2,RP11-351E7.1,HAUS1P3,RP11-313C15.1,RP11-1145L24.1,RP11-531A24.3,RNU6-285P,RP11-531A24.7,RP11-531A24.5,RP11-956J14.1,RP11-956J14.2,RP11-434I12.5,RP11-434I12.2,RP11-434I12.3,RP11-434I12.4,STAU2-AS1,RP11-181D18.4,RP11-116B19.2,VENTXP6,RP11-463D19.1,RP11-99A14.1,Metazoa_SRP,GYG1P1,Y_RNA,RPS20P21,RP11-367E12.4,RNU6-1300P,RP11-6I2.3,RPS3AP32,RNU6-1197P,RP11-6I2.4,RP1-16A9.1,CTD-2320G14.2,MIR5681A,RP11-730G20.2,RP11-730G20.1,RP11-758M4.4,RP11-758M4.3,RP11-3N13.2,RP11-300E4.2,RP11-697M17.2,CASC9,HIGD1AP6,PKMP4,AC016194.1,snoU13,RNU2-54P,RP11-706J10.2,LINC01109,LINC01111,ZFHX4-AS1,RP11-115I9.1,MRPL9P1,RP11-1102P16.1,RP11-383H13.1,MSC,TRPA1,KCNB2,TERF1,SBSPON,RPL7,RDH10,STAU2,RP11-463D19.2,UBE2W,TCEB1,TMEM70 - NA - - - - NA - - - - - -
Organoid_013 MantaDEL:0:39893:42686:2:0:0 DEL chr8 32550560 32550966 + chr8 50275629 50276026 - 52 PASS 3 0 0 0 - - - - 5' NRG1 - - - - - - - - - - 287 PPAPDC1B,WHSC1L1,RP11-567J20.3,RP11-770E5.1,RP11-567J20.2,AC026904.1,RP11-567J20.1,RP11-770E5.3,RP11-770E5.2,RP11-22C8.1,RP11-10H3.1,RN7SKP294,RFPL4AP7,LETM2,RP11-1002K11.1,RNU6-663P,RP11-11N9.4,MTND1P6,MTND2P32,RANP9,AC104037.1,RP11-451O18.1,RNU6-528P,RP11-722E23.2,RP11-359B20.1,SNORD13,RP11-359B20.5,SNORA70,RP11-10D7.5,RN7SL621P,RP11-317N12.1,RP11-10D7.2,RN7SL457P,VENTXP5,RP1-273G13.1,RP1-273G13.2,RP1-273G13.3,RP11-431M3.1,RP1-84O15.2,RP11-431M3.2,RP1-84O15.1,RP11-258J10.1,RP11-734J24.1,AC098612.1,LSM12P1,FGFR1,RP11-473J6.1,RP11-89M20.2,RP11-89M20.1,RN7SKP201,RP11-593P24.2,MTND6P19,RP11-593P24.3,RP11-139F9.1,RNU6-533P,RP11-593P24.4,RP11-962G15.1,RPL23P10,RNA5SP264,TPT1P8,AC090453.1,RP11-419C23.1,SMARCE1P4,RP11-527N22.1,RP11-527N22.2,RP11-150O12.1,RP11-150O12.2,RP11-150O12.6,RP11-150O12.5,RP11-150O12.3,RP11-150O12.4,RP11-346L1.2,RNU6-607P,RP11-863K10.2,RP11-863K10.4,RN7SL709P,AC144573.1,KB-1836B5.3,KB-1836B5.1,KB-1836B5.4,RP11-90P5.4,RP11-90P5.5,RP11-90P5.2,RP11-90P5.7,RP11-90P5.1,RP11-513D5.5,RP11-513D5.2,RP11-350N15.5,RP11-350N15.3,RP11-350N15.6,RP11-350N15.4,RPS20P22,RP11-675F6.3,RP11-675F6.4,RNF5P1,RP11-495O10.1,Y_RNA,RP11-723D22.2,RP11-723D22.3,CTD-2544N14.3,SNORD38,RPL3P10,RP11-1113C11.2,ADAM5,ADAM3A,RP11-122L4.1,AC123767.1,CTD-2024D23.1,AC136365.1,KB-1582A10.1,KB-1582A10.2,RP11-44K6.3,RP11-44K6.2,RP11-44K6.4,RP11-44K6.5,RP11-359E19.1,RP11-359E19.2,RP11-470M17.2,CTA-392C11.1,CTA-392C11.2,RP11-301G7.1,RP11-465K16.1,RNU6-356P,MIR548AO,RPS29P2,CTD-3080F16.3,RNU6-895P,SNORD65,RP11-15G16.1,KRT18P37,RP11-360L9.4,RP11-360L9.7,RP11-360L9.8,MIR486,RP11-930P14.1,RP11-930P14.2,RN7SL149P,AC090571.1,SNORD112,RP11-589C21.1,RP11-589C21.2,RP11-589C21.6,RP11-589C21.5,snoU13,RP11-231D20.2,RPL5P23,RP11-1007J8.1,RP11-503E24.2,RP11-503E24.3,RP11-412B14.1,RP11-412B14.2,RN7SL806P,MIR4469,RNU1-124P,RP11-598P20.3,VN1R46P,RP11-726G23.2,RP11-726G23.11,RP11-359P18.2,RP11-726G23.3,AFG3L2P1,RP11-726G23.7,RP11-726G23.10,RP11-726G23.8,POTEA,RNU6-104P,RP11-726G23.12,AC022616.1,RP11-726G23.6,U3,RN7SKP41,RP11-359P18.1,RP11-359P18.7,RP11-359P18.8,SNX18P27,RP11-359P18.5,CYP4F44P,RP11-359P18.6,AC134698.1,RP11-643N23.2,RP11-643N23.1,AC113134.1,HSPA8P13,ASNSP1,RP11-790L1.3,ASNSP4,RP11-101E19.8,TRIM60P15,LINC00293,MTND1P7,RNU6-656P,RP11-101E19.4,MTND6P20,RP11-101E19.7,RP11-350F16.1,RP11-350F16.2,MAPK6PS4,RN7SKP32,AC026241.1,RP11-1134I14.2,C8orf86,RNU6-819P,RPL10AP2,NDUFA5P12,RP11-1134I14.4,RP11-1134I14.8,ATP6V1G1P2,RP11-1134I14.6,IGLV8OR8-1,RP11-697N18.3,RP11-697N18.4,RP11-697N18.1,RP11-697N18.2,RNU6-665P,AC103686.1,RNU6-519P,RP11-769N21.2,CTD-2210A23.1,RNU6-295P,RPL29P19,TACC1,PLEKHA2,HTRA4,TM2D2,ADAM9,ADAM32,ADAM18,ADAM2,IDO1,IDO2,C8orf4,ZMAT4,SFRP1,GOLGA7,GINS4,AGPAT6,NKX6-3,ANK1,KAT6A,AP3M2,PLAT,IKBKB,POLB,DKK4,VDAC3,SLC20A2,SMIM19,CHRNB3,CHRNA6,THAP1,RNF170,HOOK3,RP11-598P20.5,FNTA,POMK,HGSNAT,SPIDR,CEBPD,PRKDC,MCM4,UBE2V2,EFCAB1,SNAI2,C8orf22,FUT10,TTI2,MAK16,RNF122,DUSP26,UNC5D,AC012215.1,KCNU1,ZNF703,RP11-863K10.7,ERLIN2,PROSC,GPR124,BRF2,RAB11FIP1,GOT1L1,ADRB3,EIF4EBP1,ASH2L,STAR,LSM1,BAG4,DDHD2 ENSG00000157168 chr8 31496902 32622548 1 - NA - - - - - -
Organoid_013 MantaDEL:0:43382:44107:1:3:0 DEL chr8 36533626 36533631 + chr8 77685377 77685382 - 68 PASS 6 0 7 0 - - - - 3' RP11-962G15.1 - - - - - - - - - - 612 PPAPDC1B,WHSC1L1,RP11-567J20.3,RP11-770E5.1,RP11-567J20.2,AC026904.1,RP11-567J20.1,RP11-770E5.3,RP11-770E5.2,RP11-22C8.1,RP11-10H3.1,RN7SKP294,RFPL4AP7,RP11-738G5.1,PSAT1P1,RP11-109P6.2,RP11-401N18.1,RP11-759A9.1,RP11-759A9.2,CYCSP22,RP11-139G7.1,SNORA7,RP11-401H2.1,RP11-119N19.1,RP11-11C20.1,RP11-11C20.3,RP11-110G21.2,RP11-110G21.1,RP11-546K22.3,RP11-546K22.1,RP11-546K22.2,RP11-26M5.3,RP11-26M5.2,RP11-1023P17.2,RPL34P17,CTD-3214K23.1,RP11-182E14.1,AC009800.1,AC016113.1,RP11-162D9.1,RP11-162D9.3,RP11-1081M5.2,RP11-1081M5.1,RP11-400K9.3,RP11-400K9.4,RP11-400K9.1,RP11-400K9.2,RP11-463C14.1,RP11-1070A24.2,RP11-1070A24.1,RNU6-1331P,RP11-30L15.4,RP11-30L15.6,TDGF1P5,RNU6ATAC32P,RP11-626A5.2,RP11-767C6.1,RNU105C,RN7SL250P,RP11-53M11.4,RP11-53M11.2,RP11-53M11.3,RP11-56A10.1,RP11-550I15.1,SBF1P1,RP11-628E19.2,AC100817.1,RNA5SP265,RP11-318K15.2,SNORA1,AC018607.1,RN7SL798P,RP11-446E9.2,RN7SL323P,RP11-446E9.1,SNORD54,CTA-397H3.3,NPM1P21,SNORA3,RP11-140I16.3,RP11-140I16.2,SDR16C6P,RP11-17A4.2,SEPT10P1,LINC00968,LETM2,RP11-17A4.3,RP11-17A4.1,RP11-17A4.4,RP11-33E15.1,RNU6-13P,AC032027.1,RNA5SP266,RP11-513O17.2,AC025674.1,RP11-513O17.1,RP11-513O17.3,LINC00588,RNU6-596P,RP11-756K15.2,RPL30P10,RP11-246K15.1,RNU7-174P,RP11-388G22.1,CTD-2339F6.1,RP11-44D19.1,RP11-1112C15.1,RP11-1112C15.2,RP11-648L3.2,RP11-648L3.1,RP11-716D16.1,RP11-114M5.1,RP11-114M5.3,AC068522.4,snoU13,RNU4-50P,RP11-328K2.1,RP11-25K19.1,SNORA51,RNA5SP267,RP11-379I19.2,RP11-379I19.1,RP11-379I19.3,RP11-960H2.2,RP11-960H2.1,RP11-27P7.1,SLC2A13P1,RP11-163N6.2,PDCL3P1,AC022555.1,RNU6-1202P,FGFR1,RP11-91I20.4,RP11-91I20.3,RP11-91I20.2,RP11-91I20.1,RNA5SP264,TPT1P8,AC090453.1,RP11-419C23.1,SMARCE1P4,RP11-527N22.1,RP11-527N22.2,RP11-150O12.1,RP11-33I11.2,RP11-33I11.3,AC022182.1,RP11-150O12.2,RP11-150O12.6,RP11-150O12.5,AC022182.2,RP11-150O12.3,AC022182.3,NPM1P6,RP11-787D18.2,RP11-787D18.1,KRT8P3,RN7SKP97,MIR4470,RP11-280G9.1,RP11-705O24.1,RP11-705O24.3,RP11-705O24.2,RP11-705O24.4,CTD-2571E19.1,CTD-2571E19.3,RP11-577N1.1,RP11-577N1.2,RP11-150O12.4,RP11-346L1.2,RNU6-607P,RP11-863K10.2,RP11-863K10.4,RN7SL709P,AC144573.1,KB-1836B5.3,KB-1836B5.1,KB-1836B5.4,RP11-90P5.4,RP11-90P5.5,RP11-90P5.2,RP11-90P5.7,RP11-90P5.1,RP11-513D5.5,RP11-513D5.2,RP11-350N15.5,XRCC6P4,RP11-350N15.3,RP11-442A17.2,RP11-350N15.6,RP11-350N15.4,RPS20P22,RP11-659E9.2,RP11-659E9.4,RP11-16E18.1,YTHDF3-AS1,RP11-675F6.3,RP11-675F6.4,RP11-16E18.3,RNF5P1,RP11-495O10.1,RN7SL135P,CTD-3046C4.1,Y_RNA,RP11-723D22.2,RP11-723D22.3,CTD-2544N14.3,SNORD38,RPL3P10,IFITM8P,RP11-1113C11.2,RP11-45K10.2,RP11-573J24.1,ADAM5,RN7SKP135,RP11-32K4.1,RP11-579E24.2,RP11-579E24.1,COX6CP8,LINC00966,MIR124-2,RP11-21C4.4,RP11-21C4.5,ADAM3A,RP11-122L4.1,AC123767.1,CTD-2024D23.1,AC136365.1,KB-1582A10.1,KB-1582A10.2,RP11-44K6.3,RP11-44K6.2,RP11-44K6.4,RP11-44K6.5,RP11-359E19.1,RP11-359E19.2,RP11-470M17.2,CTA-392C11.1,CTA-392C11.2,RP11-301G7.1,RP11-465K16.1,RNU6-356P,MIR548AO,RPS29P2,CTD-3080F16.3,RNU6-895P,SNORD65,RP11-21C4.1,RP11-15G16.1,KRT18P37,RP11-1D12.1,RP11-1D12.2,RP11-360L9.4,RP11-89A16.1,RPL31P41,RP11-678D18.1,CTD-3025N20.2,CTD-3025N20.3,RP11-707M3.3,CTD-2532N20.1,AC084082.3,LINC00967,RP11-346I3.4,RP11-346I3.2,RNU6-1324P,PTTG3P,SNHG6,RP11-360L9.7,RP11-360L9.8,MIR486,RP11-930P14.1,SNORD87,RP11-409C19.2,AC109335.1,RNA5SP268,RP11-453N18.1,RP11-7F18.2,RP11-7F18.1,RP11-343B22.2,AC022861.1,RP11-396J6.1,NDUFS5P6,RP11-403D15.2,RP11-930P14.2,RP11-403D15.1,RPL31P40,RN7SL149P,RPS15AP25,AC090571.1,SNORD112,RNA5SP269,RP11-589C21.1,RP11-865I6.2,RP11-589C21.2,RP11-600K15.1,RP11-589C21.6,RNU7-102P,GS1-44D20.1,RP11-589C21.5,RP11-21C17.1,RP11-744J10.3,RP11-231D20.2,RP11-744J10.2,RN7SKP29,RP11-102F4.2,RP11-159H10.4,RP11-159H10.3,RPL5P23,RP11-1007J8.1,RP11-159H10.1,RP11-503E24.2,RN7SL675P,RNA5SP270,SDCBPP2,RP11-503E24.3,RP11-412B14.1,SUMO2P20,RNU1-101P,RP11-152C15.1,RP11-412B14.2,RN7SL806P,BTF3P12,MIR4469,RNU1-124P,RP11-598P20.3,RP11-333A23.1,Metazoa_SRP,RP11-333A23.4,VN1R46P,RP11-333A23.2,RP11-726G23.2,RN7SL19P,RP11-326E22.1,TRAPPC2P2,AC099805.1,RP11-1144P22.1,RP11-281N10.1,U8,AC104012.1,RP11-726G23.11,RPS20P20,RP11-142A23.1,RP11-656G20.1,RNA5SP271,RP11-351E7.2,RP11-351E7.1,HAUS1P3,RP11-313C15.1,RP11-359P18.2,RP11-726G23.3,AFG3L2P1,RP11-726G23.7,RP11-726G23.10,RP11-726G23.8,POTEA,RP11-1145L24.1,RP11-531A24.3,RNU6-285P,RP11-531A24.7,RP11-531A24.5,RP11-956J14.1,RP11-956J14.2,RP11-434I12.5,RP11-434I12.2,RP11-434I12.3,RP11-434I12.4,STAU2-AS1,RP11-181D18.4,RP11-116B19.2,VENTXP6,RP11-463D19.1,RP11-99A14.1,GYG1P1,RPS20P21,RP11-367E12.4,RNU6-1300P,RP11-6I2.3,RNU6-104P,RP11-726G23.12,AC022616.1,RP11-726G23.6,U3,RN7SKP41,RP11-359P18.1,RP11-359P18.7,RP11-359P18.8,SNX18P27,RP11-359P18.5,CYP4F44P,RP11-359P18.6,AC134698.1,RP11-643N23.2,RP11-643N23.1,AC113134.1,HSPA8P13,ASNSP1,RP11-790L1.3,ASNSP4,RP11-101E19.8,TRIM60P15,LINC00293,MTND1P7,RNU6-656P,RP11-101E19.4,RPS3AP32,MTND6P20,RNU6-1197P,RP11-6I2.4,RP1-16A9.1,CTD-2320G14.2,MIR5681A,RP11-730G20.2,RP11-730G20.1,RP11-758M4.4,RP11-758M4.3,RP11-3N13.2,RP11-300E4.2,RP11-697M17.2,CASC9,HIGD1AP6,PKMP4,AC016194.1,RNU2-54P,RP11-706J10.2,LINC01109,LINC01111,ZFHX4-AS1,RP11-115I9.1,MRPL9P1,RP11-101E19.7,RP11-350F16.1,RP11-350F16.2,MAPK6PS4,RN7SKP32,AC026241.1,RP11-1134I14.2,C8orf86,RNU6-819P,RPL10AP2,NDUFA5P12,RP11-1134I14.4,RP11-1134I14.8,ATP6V1G1P2,RP11-1134I14.6,IGLV8OR8-1,RP11-697N18.3,RP11-697N18.4,RP11-697N18.1,RP11-697N18.2,RNU6-665P,AC103686.1,RNU6-519P,RP11-769N21.2,CTD-2210A23.1,RNU6-295P,RPL29P19,TACC1,PLEKHA2,HTRA4,TM2D2,ADAM9,ADAM32,ADAM18,ADAM2,IDO1,IDO2,C8orf4,ZMAT4,SFRP1,GOLGA7,GINS4,AGPAT6,NKX6-3,ANK1,KAT6A,AP3M2,PLAT,IKBKB,POLB,DKK4,VDAC3,SLC20A2,SMIM19,CHRNB3,CHRNA6,THAP1,RNF170,HOOK3,RP11-598P20.5,FNTA,POMK,HGSNAT,SPIDR,CEBPD,PRKDC,MCM4,UBE2V2,EFCAB1,SNAI2,C8orf22,RP11-738G5.2,SNTG1,PXDNL,PCMTD1,AC090186.1,ST18,FAM150A,RB1CC1,NPBWR1,OPRK1,ATP6V1H,RGS20,TCEA1,LYPLA1,MRPL15,SOX17,RP1,XKR4,RP11-386G21.1,RP11-386G21.2,TMEM68,TGS1,LYN,RPS20,MOS,PLAG1,CHCHD7,SDR16C5,PENK,IMPAD1,FAM110B,UBXN2B,CYP7A1,SDCBP,NSMAF,TOX,CA8,RAB2A,CHD7,CLVS1,ASPH,NKAIN3,GGH,TTPA,YTHDF3,BHLHE22,CYP7B1,ARMC1,MTFR1,PDE7A,DNAJC5B,TRIM55,CRH,RRS1,ADHFE1,C8orf46,MYBL1,VCPIP1,C8orf44-SGK3,C8orf44,SGK3,MCMDC2,TCF24,PPP1R42,COPS5,CSPP1,ARFGEF1,CPA6,PREX2,RP11-664D7.4,C8orf34,SULF1,KCNU1,ZNF703,RP11-863K10.7,ERLIN2,PROSC,SLCO5A1,AC090574.1,PRDM14,GPR124,NCOA2,BRF2,RAB11FIP1,TRAM1,AC120194.1,RP11-382J12.1,GOT1L1,ADRB3,EIF4EBP1,LACTB2,ASH2L,XKR9,EYA1,STAR,LSM1,BAG4,DDHD2,RP11-1102P16.1,RP11-383H13.1,MSC,TRPA1,KCNB2,TERF1,SBSPON,RPL7,RDH10,STAU2,RP11-463D19.2,UBE2W,TCEB1,TMEM70 ENSG00000253363 chr8 36394909 36636682 -1 - NA - - - - - -
Organoid_013 MantaDEL:0:43419:44107:0:1:0 DEL chr8 15468250 15468253 + chr8 77685336 77685339 - 84 PASS 1 0 17 0 - - - - 5' TUSC3 - - - - - - - - - - 971 PPAPDC1B,WHSC1L1,RP11-567J20.3,RP11-770E5.1,RNU6-1086P,RP11-16P20.2,RP11-567J20.2,MIR3622B,AC026904.1,RP11-16P20.3,RP11-567J20.1,RP11-770E5.3,snoU13,RNU6-1276P,RP11-770E5.2,RP11-22C8.1,RP11-1149M3.2,RP11-10H3.1,MIR4287,RN7SKP294,RFPL4AP7,RP11-597M17.3,RP11-597M17.2,RP11-738G5.1,PSAT1P1,RP11-597M17.1,RP11-109P6.2,RP11-380I10.2,RP11-401N18.1,RP11-759A9.1,RP11-380I10.3,RP11-759A9.2,RP11-380I10.4,RPL5P22,CYCSP22,RP11-181B11.1,RNU6-178P,RP11-139G7.1,RP11-181B11.2,SNORA7,RP11-401H2.1,MIR4288,RP11-119N19.1,RNA5SP259,EXTL3-AS1,RP11-11C20.1,RP11-11C20.3,RP11-110G21.2,RP11-110G21.1,RP11-662B19.2,RP11-662B19.1,HMBOX1-IT1,RNA5SP260,RP11-546K22.3,RP11-546K22.1,CTD-2647L4.4,CTD-2647L4.5,CTD-2647L4.1,RN7SL781P,HMGB1P23,AC084262.1,AC084262.2,AC084262.3,RP4-676L2.1,RP11-486M23.1,RP11-486M23.2,RPL17P33,RP11-546K22.2,LINC00589,RP11-26M5.3,AC145110.1,RP11-26M5.2,RP11-1023P17.2,RPL34P17,CTD-3214K23.1,RP11-182E14.1,AC009800.1,AC016113.1,RP11-162D9.1,RP11-162D9.3,RP11-1081M5.2,RP11-1081M5.1,RP11-400K9.3,RP11-400K9.4,RP11-400K9.1,RP11-400K9.2,RP11-463C14.1,RP11-1070A24.2,RP11-1070A24.1,RNU6-1331P,RP11-30L15.4,RP11-30L15.6,RP11-94H18.1,TDGF1P5,RNU6ATAC32P,RP11-626A5.2,RP11-767C6.1,RP11-94H18.2,RP11-489E7.1,FAM183CP,AC131254.1,MIR3148,MAP2K1P1,RNU6-1218P,RP11-489E7.4,RPS15AP24,RP11-51J9.5,RP11-51J9.4,RP11-51J9.6,HSPA8P11,CTD-2345M20.2,CTD-3107M8.1,CTD-3107M8.2,TUBBP1,RNU105C,RBPMS-AS1,RN7SL250P,RP11-53M11.4,RP11-53M11.2,RP11-53M11.3,CTD-2373N4.5,RNU5A-3P,RP11-56A10.1,RP11-550I15.1,SBF1P1,RP11-628E19.2,AC100817.1,UBXN8,RNA5SP265,RP11-318K15.2,SNORA1,AC018607.1,RN7SL798P,RP11-446E9.2,RN7SL323P,RP11-446E9.1,SNORD54,CTA-397H3.3,NPM1P21,SNORA3,RP11-140I16.3,RP11-140I16.2,SDR16C6P,RP11-17A4.2,SEPT10P1,LINC00968,LETM2,RP11-17A4.3,RP11-17A4.1,RP11-17A4.4,RP11-33E15.1,RNU6-13P,AC032027.1,RNA5SP266,RP11-513O17.2,AC025674.1,RP11-513O17.1,RP11-513O17.3,LINC00588,RNU6-596P,RP11-756K15.2,RP11-465K4.4,RP5-1009N12.1,RP11-293D9.2,SUMO2P16,RP11-363L24.3,RP11-363L24.2,RP11-566H8.3,RP11-566H8.2,RP11-566H8.1,RNA5SP261,NRG1-IT1,NRG1-IT2,RNA5SP262,RNA5SP263,NRG1-IT3,RP11-1002K11.1,RNU6-663P,RP11-11N9.4,MTND1P6,RPL30P10,RP11-246K15.1,RNU7-174P,RP11-388G22.1,CTD-2339F6.1,RP11-44D19.1,RP11-1112C15.1,RP11-1112C15.2,RP11-648L3.2,RP11-648L3.1,RP11-716D16.1,MTND2P32,RANP9,AC104037.1,RP11-451O18.1,RNU6-528P,RP11-114M5.1,RP11-722E23.2,RP11-359B20.1,RP11-114M5.3,AC068522.4,SNORD13,RP11-359B20.5,SNORA70,RP11-10D7.5,RNU4-50P,RP11-328K2.1,RP11-25K19.1,RN7SL621P,RP11-317N12.1,SNORA51,RNA5SP267,RP11-10D7.2,RP11-379I19.2,RP11-379I19.1,RN7SL457P,VENTXP5,RP11-379I19.3,RP1-273G13.1,RP11-960H2.2,RP1-273G13.2,RP11-960H2.1,RP11-27P7.1,SLC2A13P1,RP1-273G13.3,RP11-163N6.2,RP11-431M3.1,RP1-84O15.2,RP11-431M3.2,RP1-84O15.1,PDCL3P1,RP11-258J10.1,RP11-734J24.1,AC022555.1,AC098612.1,LSM12P1,RNU6-1202P,FGFR1,RP11-91I20.4,RP11-91I20.3,RP11-91I20.2,RP11-91I20.1,RP11-473J6.1,RP11-89M20.2,RP11-89M20.1,RN7SKP201,RP11-593P24.2,MTND6P19,RP11-593P24.3,RP11-139F9.1,RNU6-533P,RP11-593P24.4,RP11-962G15.1,RPL23P10,RNA5SP264,TPT1P8,AC090453.1,RP11-419C23.1,SMARCE1P4,RP11-527N22.1,RP11-527N22.2,RP11-150O12.1,RP11-33I11.2,RP11-33I11.3,AC022182.1,RP11-150O12.2,RP11-150O12.6,RP11-150O12.5,AC022182.2,RP11-150O12.3,AC022182.3,NPM1P6,RP11-787D18.2,RP11-787D18.1,KRT8P3,RN7SKP97,MIR4470,RP11-280G9.1,RP11-705O24.1,RP11-705O24.3,RP11-705O24.2,RP11-705O24.4,CTD-2571E19.1,CTD-2571E19.3,RP11-577N1.1,RP11-577N1.2,RP11-150O12.4,RP11-346L1.2,RNU6-607P,RP11-863K10.2,RP11-863K10.4,RN7SL709P,AC144573.1,KB-1836B5.3,KB-1836B5.1,KB-1836B5.4,RP11-90P5.4,RP11-90P5.5,RP11-90P5.2,RP11-90P5.7,RP11-90P5.1,RP11-513D5.5,RP11-513D5.2,RP11-350N15.5,XRCC6P4,RP11-350N15.3,RP11-442A17.2,RP11-350N15.6,RP11-350N15.4,RPS20P22,RP11-659E9.2,RP11-659E9.4,RP11-16E18.1,YTHDF3-AS1,RP11-675F6.3,RP11-675F6.4,RP11-16E18.3,RNF5P1,RP11-495O10.1,RN7SL135P,CTD-3046C4.1,Y_RNA,RP11-723D22.2,RP11-723D22.3,CTD-2544N14.3,SNORD38,RPL3P10,IFITM8P,RP11-1113C11.2,RP11-45K10.2,RP11-573J24.1,ADAM5,RN7SKP135,RP11-32K4.1,RP11-579E24.2,RP11-579E24.1,COX6CP8,LINC00966,MIR124-2,RP11-21C4.4,RP11-21C4.5,RP11-235P11.1,PPM1AP1,ADAM3A,RP11-77B22.1,RP11-77B22.2,RP11-447G11.1,MRPL49P2,RP11-13N12.2,RP11-13N12.1,RN7SL474P,RP11-468H14.2,RP11-468H14.1,RP11-242F4.2,ADAM24P,MIR548V,RP11-326L2.1,RNA5SP256,RP11-156K13.1,RP11-806O11.1,RP11-156K13.2,RP11-156K13.3,CTD-2547L16.1,CTD-2547L16.3,CTD-2547L16.2,NATP,RP11-685B14.1,RP11-685B14.3,RP11-161I2.1,RP11-122L4.1,RPL35P6,AC090420.1,AC123767.1,SNORA62,RP11-420B22.1,RP11-420B22.2,RP11-1080G15.1,CTD-2024D23.1,AC136365.1,KB-1582A10.1,KB-1582A10.2,RP11-44K6.3,RP11-1080G15.2,RP11-618M23.1,RP11-44K6.2,RP11-44K6.4,RP11-618M23.2,RP11-44K6.5,RP11-618M23.4,RP11-1105O14.1,AC100802.3,RP11-359E19.1,RP11-359E19.2,RP11-470M17.2,RPL30P9,RNU6-892P,LZTS1-AS1,CTA-392C11.1,RP11-563N12.2,RP11-404E12.1,U3,RP11-108E14.1,CTA-392C11.2,TMEM97P2,RP11-301G7.1,RP11-369E15.1,RP11-465K16.1,RNU6-356P,RP11-369E15.3,MIR548AO,RP11-369E15.4,RPS29P2,CTD-3080F16.3,RNU6-895P,SNORD65,RP11-369E15.2,RP11-21C4.1,RP11-421P23.1,RP11-15G16.1,KRT18P37,RP11-1D12.1,RP11-1D12.2,RP11-360L9.4,RP11-421P23.2,RP11-89A16.1,RPL31P41,RP11-678D18.1,AC021613.1,CTD-3025N20.2,RP11-24P4.1,AC009695.1,AC022716.1,CTD-3025N20.3,RP11-707M3.3,OR6R2P,CTD-2532N20.1,AC084082.3,AC091171.1,LINC00967,AC105206.1,MIR320A,RP11-346I3.4,RP11-346I3.2,CTD-2530N21.4,CTD-2036J7.1,RNU6-1324P,RNU6-336P,PTTG3P,SNHG6,RP11-382J24.2,RP11-582J16.4,RP11-582J16.3,RP11-582J16.5,CTD-3247F14.2,RP11-459E5.1,RP11-360L9.7,RP11-360L9.8,MIR486,RP11-930P14.1,RP11-87E22.2,SNORD87,RP11-409C19.2,AC109335.1,RNA5SP268,RP11-453N18.1,RP11-7F18.2,RP11-7F18.1,RP11-343B22.2,AC022861.1,RP11-396J6.1,NDUFS5P6,RP11-403D15.2,RP11-930P14.2,RP11-403D15.1,RPL31P40,RN7SL149P,RPS15AP25,AC090571.1,SNORD112,RNA5SP269,RP11-589C21.1,RP11-865I6.2,RP11-589C21.2,RP11-600K15.1,RP11-589C21.6,RNU7-102P,GS1-44D20.1,RP11-589C21.5,RP11-21C17.1,RP11-744J10.3,RP11-231D20.2,RP11-744J10.2,RN7SKP29,RP11-102F4.2,RP11-159H10.4,RP11-159H10.3,RPL5P23,RP11-1007J8.1,RP11-159H10.1,RP11-503E24.2,RN7SL675P,RNA5SP270,SDCBPP2,RP11-503E24.3,RP11-412B14.1,SUMO2P20,RNU1-101P,RP11-152C15.1,RP11-87E22.1,RN7SL303P,RP11-875O11.1,RP11-412B14.2,RN7SL806P,BTF3P12,MIR4469,RP11-875O11.2,RNU1-124P,RP11-598P20.3,RP11-875O11.3,RP11-333A23.1,Metazoa_SRP,RP11-333A23.4,RP11-1149O23.2,VN1R46P,RP11-1149O23.1,RP11-333A23.2,RP11-726G23.2,RP11-1149O23.3,RN7SL19P,RP11-326E22.1,TRAPPC2P2,RP11-1149O23.4,AC099805.1,RP11-1144P22.1,RP11-177H13.2,RP11-281N10.1,CTC-756D1.2,U8,AC104012.1,RP11-726G23.11,CTC-756D1.1,RPS20P20,CTC-756D1.3,RP11-142A23.1,RNU4-71P,RP11-656G20.1,RP11-583M2.2,RP11-175E9.1,RNA5SP271,RP11-351E7.2,RP11-351E7.1,HAUS1P3,RP11-313C15.1,RP11-359P18.2,RP11-726G23.3,AFG3L2P1,RP11-726G23.7,RP11-726G23.10,RP11-726G23.8,POTEA,RP11-1145L24.1,RP11-531A24.3,RNU6-285P,RP11-531A24.7,RP11-531A24.5,RP11-956J14.1,RP11-213G6.2,RP11-956J14.2,AC012119.1,RP11-175E9.2,RP11-434I12.5,SNORA67,RP11-434I12.2,RP11-434I12.3,RNU1-148P,RP11-203E8.1,RP11-434I12.4,RP11-624C23.1,STAU2-AS1,RP11-181D18.4,RP11-116B19.2,VENTXP6,RP11-463D19.1,RP11-99A14.1,GYG1P1,RP11-561E1.1,RPS20P21,RP11-367E12.4,RNU6-1300P,RP11-6I2.3,GS1-72M22.1,NEFL,CTD-2168K21.2,CTD-2168K21.1,RP11-429O2.1,RN7SL651P,RP11-395I14.2,RP11-219J21.1,RP11-219J21.2,RP11-299D14.2,AC090103.1,RNA5SP258,RP11-98P2.1,SDAD1P1,RP11-14I17.2,RP11-14I17.1,RP11-14I17.3,RP11-1G11.2,RNU6-104P,RP11-726G23.12,RP11-384C12.1,AC022616.1,RP11-726G23.6,COX6B1P4,RP11-613H2.1,RN7SKP41,RP11-359P18.1,MIR548H4,RP11-359P18.7,RP11-359P18.8,SNX18P27,RP11-359P18.5,CYP4F44P,RP11-359P18.6,AC134698.1,RP11-643N23.2,RP11-643N23.1,AC113134.1,HSPA8P13,ASNSP1,RP11-790L1.3,ASNSP4,RP11-613H2.2,RP11-101E19.8,AC090150.1,RP11-521M14.1,GULOP,TRIM60P15,LINC00293,MTND1P7,RNU6-656P,RP11-101E19.4,RPS3AP32,MTND6P20,RNU6-1197P,RP11-6I2.4,RP1-16A9.1,CTD-2320G14.2,MIR5681A,RP11-730G20.2,RP11-730G20.1,RP11-758M4.4,RP11-758M4.3,RP11-3N13.2,RP11-300E4.2,RP11-697M17.2,CASC9,HIGD1AP6,PKMP4,AC016194.1,RNU2-54P,RP11-706J10.2,LINC01109,LINC01111,ZFHX4-AS1,RP11-115I9.1,MRPL9P1,RP11-101E19.7,RP11-350F16.1,RP11-350F16.2,MAPK6PS4,RN7SKP32,AC026241.1,RP11-1134I14.2,C8orf86,RNU6-819P,RPL10AP2,NDUFA5P12,RP11-1134I14.4,RP11-1134I14.8,ATP6V1G1P2,RP11-1134I14.6,IGLV8OR8-1,RP11-697N18.3,RP11-697N18.4,RP11-697N18.1,RP11-697N18.2,RNU6-665P,AC103686.1,RNU6-519P,RP11-769N21.2,CTD-2210A23.1,RNU6-295P,RPL29P19,TACC1,PLEKHA2,MSR1,FGF20,MICU3,HTRA4,TM2D2,ZDHHC2,CNOT7,ADAM9,VPS37A,MTMR7,SLC7A2,ADAM32,PDGFRL,MTUS1,ADAM18,ADAM2,FGL1,PCM1,IDO1,IDO2,C8orf4,ZMAT4,ASAH1,SFRP1,GOLGA7,GINS4,NAT1,NAT2,PSD3,AGPAT6,SH2D4A,NKX6-3,CSGALNACT1,INTS10,ANK1,LPL,SLC18A1,ATP6V1B2,LZTS1,GFRA2,DOK2,XPO7,KAT6A,AP3M2,NPM2,PLAT,FGF17,DMTN,IKBKB,FAM160B2,NUDT18,HR,REEP4,POLB,LGI3,DKK4,SFTPC,VDAC3,BMP1,SLC20A2,SMIM19,CHRNB3,CHRNA6,THAP1,RNF170,HOOK3,RP11-598P20.5,FNTA,POMK,PHYHIP,POLR3D,HGSNAT,PIWIL2,SLC39A14,SPIDR,PPP3CC,SORBS3,CEBPD,PRKDC,PDLIM2,AC037459.4,C8orf58,MCM4,CCAR2,BIN3,UBE2V2,EFCAB1,EGR3,PEBP4,RHOBTB2,SNAI2,C8orf22,RP11-738G5.2,SNTG1,TNFRSF10B,PXDNL,PCMTD1,TNFRSF10C,TNFRSF10D,TNFRSF10A,CHMP7,R3HCC1,AC090186.1,LOXL2,ST18,ENTPD4,FAM150A,RB1CC1,SLC25A37,NPBWR1,OPRK1,AC051642.1,FP15737,NKX3-1,NKX2-6,STC1,ADAM28,ATP6V1H,RGS20,ADAMDEC1,ADAM7,TCEA1,NEFM,DOCK5,LYPLA1,MRPL15,SOX17,RP1,XKR4,RP11-386G21.1,RP11-386G21.2,GNRH1,KCTD9,TMEM68,CDCA2,TGS1,EBF2,LYN,PPP2R2A,RPS20,BNIP3L,MOS,PLAG1,CHCHD7,PNMA2,DPYSL2,SDR16C5,PENK,ADRA1A,IMPAD1,FAM110B,RP11-521M14.2,STMN4,UBXN2B,CYP7A1,SDCBP,TRIM35,NSMAF,PTK2B,TOX,CA8,RAB2A,CHD7,CHRNA2,EPHX2,CLVS1,CLU,ASPH,SCARA3,CCDC25,ESCO2,NKAIN3,PBK,GGH,TTPA,YTHDF3,BHLHE22,CYP7B1,ARMC1,SCARA5,NUGGC,MTFR1,ELP3,PDE7A,PNOC,DNAJC5B,ZNF395,FBXO16,TRIM55,FZD3,EXTL3,CRH,RRS1,INTS9,ADHFE1,HMBOX1,C8orf46,KIF13B,MYBL1,DUSP4,TMEM66,VCPIP1,C8orf44-SGK3,C8orf44,LEPROTL1,MBOAT4,DCTN6,SGK3,RBPMS,MCMDC2,GTF2E2,TCF24,PPP1R42,SMIM18,COPS5,GSR,PPP2CB,TEX15,PURG,CSPP1,WRN,NRG1,ARFGEF1,FUT10,CPA6,PREX2,TTI2,MAK16,RNF122,RP11-664D7.4,DUSP26,C8orf34,UNC5D,AC012215.1,SULF1,KCNU1,ZNF703,RP11-863K10.7,ERLIN2,PROSC,SLCO5A1,AC090574.1,PRDM14,GPR124,NCOA2,BRF2,RAB11FIP1,TRAM1,AC120194.1,RP11-382J12.1,GOT1L1,ADRB3,EIF4EBP1,LACTB2,ASH2L,XKR9,EYA1,STAR,LSM1,BAG4,DDHD2,RP11-1102P16.1,RP11-383H13.1,MSC,TRPA1,KCNB2,TERF1,SBSPON,RPL7,RDH10,STAU2,RP11-463D19.2,UBE2W,TCEB1,TMEM70 ENSG00000104723 chr8 15274724 15624158 1 - NA - - - - - -
Organoid_013 MantaDEL:0:44107:44266:0:0:0 DEL chr8 77685510 77685512 + chr8 85624197 85624199 - 84 PASS 5 0 12 0 - - - - - - - - - - - - - - - - 74 RP11-48D4.2,hsa-mir-3149,HIGD1AP18,AC105242.1,RP11-38H17.1,RP11-91P17.1,RNU6-1220P,RP11-594N15.2,RP11-594N15.3,RP11-578O24.2,PRKRIRP7,RP11-79H23.3,AC009941.1,RP11-1114I9.1,RP11-758H6.1,RPL3P9,RP11-27N21.3,RP11-26J3.1,RNU7-85P,RP11-26J3.3,RP11-92K15.3,RP11-92K15.1,RN7SL41P,MIR5708,RP11-941H19.1,RP11-941H19.3,RP11-941H19.2,SNORA20,RP11-775E10.1,RNU6-1213P,Y_RNA,RP11-48B3.3,RP11-48B3.4,RPSAP47,RP11-48B3.2,RNU2-71P,SLC25A51P3,RN7SL107P,CKS1BP7,RNU11-6P,RN7SL308P,HMGB1P41,RP11-172E10.1,RP11-1149M10.1,RP11-1149M10.2,RP11-363E6.1,UBE2HP1,RP11-363E6.4,RP11-363E6.3,RP11-157I4.4,RP11-257P3.3,FTH1P11,IMPA1P,NIPA2P4,RPS26P34,SLC10A5P1,RP13-923O23.6,HNRNPA1P36,RP11-354A14.1,RP11-99H20.1,HNRNPA1P4,RP11-653B10.1,RP11-731N10.1,CTD-2272D18.1,CTD-2272D18.2,RP11-296C13.1,RP11-813B8.1,RP11-51M18.1,RP11-120I21.2,TPM3P3,RP11-120I21.3,AC103816.1,RNU6-1040P,RP11-509P12.1 - NA - - - - NA - - - - - -
Organoid_013 MantaDEL:201:0:1:0:0:0 DEL chr1 2892036 2892040 + chr1 5624480 5624484 - 47 PASS 4 0 4 0 - - - - - - - - - - - - - - - - 37 ACTRT2,PRDM16,ARHGEF16,MEGF6,TPRG1L,WRAP73,TP73,CCDC27,SMIM1,LRRC47,CEP104,DFFB,C1orf174,AJAP1,LINC00982,AL008733.1,RP1-163G9.2,RP11-22L13.1,RP11-168F9.2,MIR551A,RP11-46F15.2,RP5-1092A11.5,RP5-1092A11.2,TP73-AS1,RN7SL574P,RP1-286D6.5,AL691523.1,LINC01134,RP13-614K11.1,RP13-614K11.2,RP11-374C13.1,RP5-1166F10.1,RP1-37J18.1,RP1-37J18.2,RP11-542C10.1,RP1-58B11.1,MIR4417 - NA - - - - NA - - - - - -
Organoid_013 MantaDEL:1124:0:1:0:0:0 DEL chr1 15526643 15526645 + chr1 33134778 33134780 - 62 PASS 6 0 6 0 - - - - 5' TMEM51 3' RBBP4 FUSION+ 5' of TMEM51 into 3' of RBBP4 - - FUSION+ 5' of TMEM51 into 3' of RBBP4 - - 489 RP3-467K16.2,RP3-467K16.7,RP3-467K16.4,SCARNA21,RP4-680D5.8,RP4-680D5.2,CHCHD2P6,RNU7-179P,RP4-680D5.4,RP4-680D5.9,AL121992.1,RP11-288I21.1,RP11-169K16.4,RP11-169K16.6,RP11-169K16.7,RP11-169K16.8,RP11-169K16.9,snoU13,RP1-134O19.3,RP11-5P18.1,RP11-5P18.3,TBC1D3P6,RP11-5P18.5,RP11-5P18.10,RP11-276H7.2,RP11-276H7.3,ARHGEF19-AS1,ANO7P1,MT1XP1,RP11-430L17.1,RP4-798A10.2,CROCCP3,RNU1-1,RP4-798A10.7,RP4-798A10.4,U1,RP5-875O13.6,AL355149.1,RP5-1182A14.5,CROCCP2,MST1P2,RNU1-3,AL021920.1,EIF1AXP1,ESPNP,RNU1-4,CROCCP4,MST1L,RP11-108M9.1,RP11-108M9.2,MIR3675,USP48,RP11-108M9.4,RP11-108M9.5,RNU1-2,RP11-108M9.6,RP1-37C10.3,Y_RNA,RP11-380J14.1,MIR3972,PADI6,RP1-20B21.4,AC004824.1,RP11-473A10.2,RP11-174G17.2,RP11-174G17,RP11-422P22.1,RP1-8B22.1,RP1-8B22.2,MIR4695,MIR1290,RP5-1126H10.2,AL137127.1,RP1-43E13.2,RP4-657E11.10,RNU6-1099P,RN7SL85P,RN7SL277P,RNU4-28P,RP5-1056L3.1,RPS14P3,RP11-91K11.2,RN7SL304P,RP3-340N1.2,UBXN10-AS1,RP3-340N1.6,RP4-745E8.2,LINC01141,RP4-749H3.2,RPS4XP4,PINK1-AS,AL391357.1,RP5-930J4.5,RP5-930J4.2,RP5-930J4.4,RNU7-200P,MIR1256,RPS15AP6,RP11-487E1.2,HSPE1P27,AL031005.1,RP3-329E20.2,RP5-1071N3.1,PPP1R11P1,RP11-293F5.8,RP11-293F5.1,NBPF2P,HS6ST1P1,CROCCP5,PFN1P10,RP11-63N8.3,AL359815.1,RP11-132G19.3,RP11-26H16.1,RN7SL421P,RN7SL386P,RNU6-1022P,RN7SL768P,RN7SL186P,RNU6-776P,RP1-224A6.3,LINC00339,CDC42-IT1,RP1-224A6.8,RP1-224A6.9,MIR4418,RP11-415K20.1,ZBTB40-IT1,MIR4684,AL611946.1,RP11-69E9.1,MIR4253,RP1-74M1.3,RP1-184J9.2,MIR3115,MIR4419A,RP5-979D14.1,RNU6-514P,RNU6-135P,RP5-1057J7.1,RP5-1057J7.6,RP5-1057J7.7,RP4-654C18.1,RP1-150O5.3,RP11-223J15.2,RP5-886K2.1,RN7SL532P,RP5-886K2.3,RN7SL24P,RP11-4M23.2,RP11-4M23.3,MIR378F,RP11-4M23.4,RP11-4M23.7,RP11-293P20.2,RP11-293P20.4,RP11-10N16.2,AL590683.1,AL590683.2,RP11-10N16.3,RN7SL857P,RP4-594I10.3,RP11-496D1.2,RNU6-1208P,RP11-84D1.1,RP11-84D1.2,MIR4425,RP4-799D16.1,RP4-781L3.1,RP4-706G24.1,RP3-465N24.6,RP3-465N24.5,SDHDP6,RP11-335G20.7,RNU6-1171P,RP3-469D22.1,AL031284.1,RP11-70P17.1,RP1-187B23.1,RP1-317E23.3,RP1-317E23.7,RP1-125I3.2,SNRPFP2,RP1-125I3.4,MIR3917,AL033528.1,RNU6-110P,SCARNA17,SCARNA18,AL391650.1,RP11-96L14.7,RP11-231P20.2,RP11-231P20.5,RP11-569G9.7,RN7SL490P,RP3-476K8.4,RP3-476K8.3,DPPA2P2,MIR1976,RN7SL679P,RP11-492M19.3,RP4-785J1.1,RP5-968P14.2,RN7SL501P,RN7SL165P,RP1-50O24.6,RP11-344H11.4,RP11-344H11.5,OSTCP2,RP11-40H20.5,CHCHD3P3,NPM1P39,SNRPEP7,RP11-40H20.4,RP11-4K3__A.3,RNU6-48P,RP11-4K3__A.5,RP1-144C9.2,RP4-752I6.1,RP1-159A19.4,RP1-159A19.3,RP11-288L9.1,RP11-288L9.4,RNU6-949P,CHMP1AP1,RNU6-424P,RP3-426I6.2,RPEP3,RP3-426I6.5,RP3-426I6.6,RNU6-1245P,SCARNA1,RP11-460I13.2,RP11-460I13.6,RN7SL559P,SPCS2P4,RP5-1053E7.2,RP5-1053E7.3,RNU6-176P,RNU7-29P,RP5-1092A3.4,RP5-1092A3.5,RP1-308E4.1,RNU6ATAC27P,SNHG3,LDLRAD2,SNORA73B,PRDX3P2,SNHG12,SNORD99,RP11-442N24__B.1,RNU11,SCARNA24,RP1-212P9.2,RP1-212P9.3,HSPG2,RP4-604A21.1,RP11-242O24.3,RP11-242O24.5,RP11-467D18.2,AL645859.1,RP3-437I16.1,AL139151.1,RP11-810H18.1,AC092265.1,RP4-656G21.1,AL645944.1,RP11-179G8.1,RP11-111I12.1,RP5-893G23.1,RP3-357I16.1,RP4-591L5.1,RP4-591L5.2,MATN1-AS1,MIR4420,RP5-1125N11.1,RP1-65J11.1,RN7SKP91,RP1-65J11.5,SNORD103A,SNORD103B,SNORD85,RP11-201O14.1,RP11-201O14.2,SEPW1P,RP11-490K7.1,RP11-490K7.4,RP11-266K22.2,RP11-439L8.2,RNU6-40P,RP11-439L8.3,RP11-439L8.4,RP11-73M7.1,RP11-73M7.6,RP11-73M7.9,MIR4254,RP11-84A19.3,RP11-84A19.2,RP11-84A19.4,RP4-534N18.2,RP11-277A4.4,MIR5585,RP4-622L5.2,RP4-622L5.7,MTMR9LP,RP4-811H24.9,GAPDHP20,RP11-395N6.4,LRRC37A12P,RN7SL122P,CELA3B,CELA3A,CDC42,WNT4,ZBTB40,EPHA8,C1QA,C1QC,C1QB,EPHB2,LACTBL1,C1orf234,KDM1A,LUZP1,HTR1D,HNRNPR,ZNF436,C1orf213,TCEA3,ASAP3,E2F2,ID3,MDS2,RPL11,TCEB3,PITHD1,LYPLA2,GALE,HMGCL,FUCA1,CNR2,PNRC2,SRSF10,MYOM3,IL22RA1,IFNLR1,GRHL3,STPG1,NIPAL3,RCAN3,NCMAP,SRRM1,CLIC4,RUNX3,SYF2,C1orf63,RHD,TMEM50A,RHCE,TMEM57,LDLRAP1,MAN1C1,SEPN1,RP1-317E23.6,MTFR1L,AL020996.1,AUNIP,PAQR7,STMN1,PAFAH2,EXTL1,SLC30A2,TRIM63,PDIK1L,FAM110D,ZNF593,CNKSR1,CATSPER4,CEP85,SH3BGRL3,UBXN11,CD52,AIM1L,ZNF683,LIN28A,DHDDS,HMGN2,RPS6KA1,ARID1A,PIGV,ZDHHC18,SFN,GPN2,GPATCH3,NUDC,NR0B2,C1orf172,TRNP1,FAM46B,SLC9A1,WDTC1,TMEM222,SYTL1,MAP3K6,FCN3,CD164L2,GPR3,WASF2,AHDC1,FGR,IFI6,FAM76A,STX12,PPP1R8,AL109927.1,THEMIS2,RPA2,SMPDL3B,XKR8,EYA3,PTAFR,DNAJC8,AL353354.1,AL353354.2,ATPIF1,SESN2,MED18,PHACTR4,RCC1,TRNAU1AP,TAF12,RAB42,GMEB1,YTHDF2,OPRD1,EPB41,TMEM200B,SRSF4,MECR,PTPRU,MATN1,LAPTM5,SDC3,PUM1,NKAIN1,SNRNP40,ZCCHC17,FABP3,SERINC2,AC114494.1,TINAGL1,HCRTR1,PEF1,COL16A1,BAI2,SPOCD1,PTP4A2,AL136115.1,KHDRBS1,TMEM39B,KPNA6,TXLNA,CCDC28B,IQCC,DCDC2B,TMEM234,EIF3I,FAM167B,LCK,HDAC1,MARCKSL1,TSSK3,FAM229A,BSDC1,RP1-27O5.3,ZBTB8B,ZBTB8A,ZBTB8OS,FHAD1,EFHD2,CTRC,CELA2A,CELA2B,CASP9,DNAJC16,AGMAT,DDI2,RSC1A1,PLEKHM2 ENSG00000171729 chr1 15479028 15546976 1 ENSG00000162521 chr1 33116743 33151812 1 - - -
Organoid_013 MantaDEL:2199:0:1:0:0:0 DEL chr1 28607234 28607239 + chr1 32754532 32754537 - 59 PASS 6 0 7 0 - - - - 5' SESN2 - - - - - - - - - - 106 Y_RNA,RP1-308E4.1,RNU6ATAC27P,SNHG3,SNORA73B,snoU13,PRDX3P2,SNHG12,SNORD99,RP11-442N24__B.1,RNU11,SCARNA24,RP1-212P9.2,RP1-212P9.3,RP4-604A21.1,RP11-242O24.3,RP11-242O24.5,RP11-467D18.2,AL645859.1,RP3-437I16.1,AL139151.1,RP11-810H18.1,AC092265.1,RP4-656G21.1,AL645944.1,RP11-179G8.1,RP11-111I12.1,RP5-893G23.1,RP3-357I16.1,RP4-591L5.1,RP4-591L5.2,MATN1-AS1,MIR4420,RP5-1125N11.1,RP1-65J11.1,RN7SKP91,RP1-65J11.5,SNORD103A,SNORD103B,SNORD85,RP11-201O14.1,RP11-201O14.2,SEPW1P,RP11-490K7.1,RP11-490K7.4,RP11-266K22.2,RP11-439L8.2,RNU6-40P,RP11-439L8.3,RP11-439L8.4,RP11-73M7.1,RP11-73M7.6,RP11-73M7.9,MIR4254,RP11-84A19.3,RP11-84A19.2,RP11-84A19.4,RP4-534N18.2,RP11-277A4.4,MIR5585,RP4-622L5.2,RP4-622L5.7,MTMR9LP,MED18,PHACTR4,RCC1,TRNAU1AP,TAF12,RAB42,GMEB1,YTHDF2,OPRD1,EPB41,TMEM200B,SRSF4,MECR,PTPRU,MATN1,LAPTM5,SDC3,PUM1,NKAIN1,SNRNP40,ZCCHC17,FABP3,SERINC2,AC114494.1,TINAGL1,HCRTR1,PEF1,COL16A1,BAI2,SPOCD1,PTP4A2,AL136115.1,KHDRBS1,TMEM39B,KPNA6,TXLNA,CCDC28B,IQCC,DCDC2B,TMEM234,EIF3I,FAM167B,LCK ENSG00000130766 chr1 28586038 28609002 1 - NA - - - - - -
Organoid_013 MantaDEL:10871:6:6:1:0:0 DEL chr6 143465738 143465739 + chr6 143466189 143466190 - 53 PASS 3 0 13 0 - - - - 5' AIG1 3' AIG1 INTERNL 0 EXONS DELETED - 1 INTERNL 0 EXONS DELETED - - 0 - ENSG00000146416 chr6 143381633 143661441 1 ENSG00000146416 chr6 143381633 143661441 1 - - -
Organoid_013 MantaDEL:11320:0:1:0:0:0 DEL chr1 187124756 187124759 + chr1 187127157 187127160 - 128 PASS 19 0 15 0 - - - - 5' LINC01036 3' LINC01036 INTERNL 0 EXONS DELETED - - INTERNL 0 EXONS DELETED - - 0 - ENSG00000236030 chr1 187061974 187329455 1 ENSG00000236030 chr1 187061974 187329455 1 - - -
Organoid_013 MantaDEL:15835:0:1:0:0:0 DEL chr1 246013974 246013978 + chr1 246021928 246021932 - 151 PASS 22 0 16 0 - - - - 3' SMYD3 5' SMYD3 INTERNL 4 EXONS DELETED - - INTERNL 4 EXONS DELETED - 6 0 - ENSG00000185420 chr1 245912642 246670614 -1 ENSG00000185420 chr1 245912642 246670614 -1 - - -
Organoid_013 MantaDEL:21537:0:1:0:0:0 DEL chr2 72527239 72527240 + chr2 72603483 72603484 - 62 PASS 7 0 10 0 - - - - 3' EXOC6B 5' EXOC6B INTERNL 3 EXONS DELETED - - INTERNL 3 EXONS DELETED - 4 0 - ENSG00000144036 chr2 72403113 73053170 -1 ENSG00000144036 chr2 72403113 73053170 -1 - - -
Organoid_013 MantaDEL:23118:0:1:0:0:0 DEL chr2 104131025 104131026 + chr2 105184545 105184546 - 84 PASS 13 0 4 0 - - - - - - - - - - - - - - - - 12 AC018880.1,AC018880.2,AC013727.1,AC013727.2,RP11-76I14.1,AC096554.1,AHCYP3,AC068535.2,AC068535.3,LINC01102,LINC01103,U3 - NA - - - - NA - - - - - -
Organoid_013 MantaDEL:23835:0:1:0:0:0 DEL chr2 115551596 115551600 + chr2 115650317 115650321 - 87 PASS 12 0 10 0 - - - - 5' DPP10 3' DPP10 INTERNL 0 EXONS DELETED - - INTERNL 0 EXONS DELETED - - 2 DPP10-AS3,DPP10-AS2 ENSG00000175497 chr2 115199876 116603328 1 ENSG00000175497 chr2 115199876 116603328 1 - - -
Organoid_013 MantaDEL:37019:0:1:0:0:0 DEL chr3 60386448 60386453 + chr3 60391618 60391623 - 62 PASS 12 0 4 0 - - FHIT FHIT - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaDEL:37027:0:1:0:0:0 DEL chr3 60454965 60454968 + chr3 60587591 60587594 - 54 PASS 4 0 3 0 - - FHIT FHIT - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaDEL:39084:0:1:0:0:0 DEL chr3 90282978 90282980 + chr3 90325109 90325111 - 58 PASS 4 0 5 0 - - - - 3' PROSP - - - - - - - - - - 1 HSPE1P19 ENSG00000189002 chr3 90251466 90306565 -1 - NA - - - - - -
Organoid_013 MantaDEL:39694:0:1:0:0:0 DEL chr3 102925632 102925636 + chr3 102984336 102984340 - 68 PASS 8 0 7 0 - - - - - - - - - - - - - - - - 1 NDUFA4P2 - NA - - - - NA - - - - - -
Organoid_013 MantaDEL:43950:0:1:0:0:0 DEL chr3 165101019 165101025 + chr3 165101219 165101220 - 49 PASS 9 1 8 0 - - - - 5' RP11-85M11.2 3' RP11-85M11.2 INTERNL 0 EXONS DELETED - - INTERNL 0 EXONS DELETED - - 0 - ENSG00000244128 chr3 164924748 165373211 1 ENSG00000244128 chr3 164924748 165373211 1 - - -
Organoid_013 MantaDEL:55847:0:0:1:0:0 DEL chr4 137594455 137594458 + chr4 137594862 137594863 - 81 PASS 11 0 10 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaDEL:56195:0:1:0:0:0 DEL chr4 142479560 142479562 + chr4 142503343 142503345 - 87 PASS 11 0 8 0 - - - - - - - - - - - - - - - - 1 RP11-208N20.1 - NA - - - - NA - - - - - -
Organoid_013 MantaDEL:60946:0:1:0:0:0 DEL chr5 11166666 11166667 + chr5 43842249 43842250 - 61 PASS 9 0 5 0 - - - - 3' CTNND2 - - - - - - - - - - 415 RP11-152K4.1,Y_RNA,RNU6-363P,RP11-5N11.2,RP11-5N11.1,RP11-5N11.3,RP11-5N11.4,RP11-5N11.5,RP11-5N11.6,RP11-5N11.7,RNU6-358P,CTD-2290C23.1,snoU13,RNU6-760P,CTD-2290C23.2,RPL5P14,AC025458.1,TPT1P5,CTD-2206G10.2,MIR4279,CTD-2152M20.2,CTD-2186M15.3,CTD-2186M15.1,RNU6-1079P,RNU6-378P,AC008949.1,MIR579,CTD-2290P7.1,CTD-2004A9.1,AC026703.2,CTD-2218G20.1,CTD-2066L21.3,CTD-2218G20.2,CTD-2066L21.1,CTD-2066L21.2,CTD-2017D15.1,RP11-36C20.1,RP11-113I22.1,CTD-2203K17.1,CTD-2233C11.3,CTD-2233C11.2,RNU6-923P,RP11-1084J3.1,RP11-1084J3.3,RP11-1250I15.3,RP11-1023L17.1,RP11-1023L17.2,RP11-1325J9.1,CTD-2024P10.2,CTD-2024P10.1,CTD-2517O10.6,CTD-2517O10.5,RPL21P54,AC010368.1,CTD-2046J7.1,U3,RNU7-130P,CTD-2113L7.1,RP11-79C6.1,RP11-79C6.3,CTD-2197M16.1,MIR580,RNU6-1305P,NADK2-AS1,RNA5SP181,CTD-2282P23.1,CTD-2353F22.1,CTD-2653M23.3,KRT18P31,RPS4XP6,CTD-2284O10.3,OFD1P17,RN7SL37P,CTD-2124B8.2,RNU7-75P,RP11-648M2.1,RP11-648M2.2,RNU6-1190P,RNU6-484P,AC008869.1,GDNF-AS1,CTD-2194L12.2,CTD-2194L12.3,CTD-2130F23.2,CTD-2130F23.1,CTD-2116N24.1,AC074129.1,CTD-2207A17.1,EGFLAM-AS4,EGFLAM-AS3,EGFLAM-AS2,EGFLAM-AS1,CTD-2108O9.4,CTD-2263F21.1,LIFR-AS1,NUP155,MIR3650,CTD-2196P11.2,RP11-122C5.1,CTD-2127H9.1,RP11-122C5.2,RP11-122C5.3,AIG1P1,GOLGA5P1,CTD-2078B5.2,CCDC11P1,INTS6P1,GCSHP1,LINC00603,KRT18P56,LINC00604,RNU1-150P,AC108105.1,SNORA63,SNORA57,SNORD72,RNU7-161P,RP11-301A5.2,CTD-2122P11.1,OXCT1-AS1,CTD-2062O1.1,CTD-2156G10.1,MTHFD2P6,RP11-112L7.1,SERBP1P6,CTD-2265D6.2,RP11-116B13.1,CTD-2325A15.5,CTD-2325A15.3,CTD-2325A15.2,CTD-2201E18.4,CTD-2201E18.2,ADAMTS12,CTD-2201E18.1,CTD-2201E18.5,CTD-2201E18.3,CTD-2035E11.3,CTD-2035E11.4,AC025171.1,CTD-2035E11.5,RP11-447H19.3,RP11-447H19.2,AC010368.2,SPEF2,BASP1,CDH18,RP11-447H19.1,CTD-2636A23.2,RP11-159F24.2,RP11-159F24.3,EEF1A1P19,RP11-159F24.6,RP11-159F24.5,NNT-AS1,CTD-2210P15.2,RPL29P12,RXFP3,CDH12,WDR70,SLC45A2,GDNF,AMACR,PRDM9,EGFLAM,C5orf17,RP11-1084J3.4,C1QTNF3,CDH10,IL7R,LIFR,CDH9,CDH6,CAPSL,RAI14,UGT3A1,DROSHA,UGT3A2,LMBRD2,OSMR,DNAH5,SKP2,RICTOR,RNU6-679P,RP11-308B16.2,CT49,AC106771.1,RP11-419C19.3,RP11-419C19.1,TTC23L,RP11-419C19.2,AC016553.1,CTC-305H11.1,RPS23P5,CTD-2042D5.1,CTC-232H10.1,CTB-51A17.1,CTD-2165H16.3,CCT6P2,EEF1A1P13,CTD-2165H16.4,RBBP4P1,MIR4637,CTB-40H15.4,UQCRBP3,HNRNPKP5,AC016575.1,SEPHS2P1,U8,RP1-251I12.1,RP1-137K24.1,MARK2P5,CTD-2313D3.1,NADK2,CTD-2350J17.1,MIR887,RNA5SP178,RP11-19O2.1,RP11-19O2.2,NACAP6,RP1-167G20.1,RP1-167G20.2,RP11-260E18.1,CTC-461F20.1,RNA5SP179,CTB-55B8.1,RNU6-660P,CTD-2228A4.1,RAD1,AC091878.1,RNA5SP180,DCAF13P2,RNU6-1003P,CTD-2139B15.1,TRIO,RN7SKP133,FTH1P10,FYB,CTD-2139B15.2,CTD-2139B15.5,CTD-2139B15.4,RP11-321E2.3,RP11-321E2.4,RP11-321E2.5,RP11-321E2.13,RP11-321E2.12,RP11-321E2.6,RP11-321E2.11,RP11-321E2.10,RP11-321E2.2,RP11-321E2.7,RP11-321E2.8,RP11-321E2.9,RP11-432M8.2,RP11-432M8.1,RP11-432M8.3,RP11-432M8.4,RP11-432M8.5,RP11-432M8.7,RP11-432M8.6,RP11-432M8.8,RP11-432M8.9,RP11-432M8.20,RP11-432M8.10,RP11-432M8.11,RP11-432M8.12,RP11-432M8.13,C5orf22,RP11-432M8.15,RP11-432M8.14,RP11-432M8.16,RP11-432M8.18,RP11-432M8.17,BRIX1,RP11-432M8.19,RP11-454P21.1,RPL36AP21,SNORD81,RN7SL58P,CTD-2023M8.1,UBE2V1P12,CTD-2151L9.2,RP11-81B23.1,RP11-124N3.3,RP11-124N3.2,RPL32P14,HSPD1P15,AC118463.1,RP11-61K20.1,RP11-420O16.2,RP11-420O16.1,RANBP3L,RP11-774D14.1,CTD-2333M24.1,RP11-697E23.1,RP11-811J10.1,RP11-374A4.1,GUSBP1,RP11-823P9.3,AC138951.1,RP11-360I2.1,RP11-804N13.1,AC140132.1,HSPD1P1,RP11-855C21.1,PMCHL1,GCNT1P2,CTD-2234B20.1,RN7SL572P,CTD-2272G21.3,CTD-2272G21.2,CTD-2272G21.1,PDZD2,CTD-2351A8.1,RP11-197O8.1,SNORA40,CTD-2138O14.1,CTD-2015B23.2,CTD-2074D8.1,RP11-116O11.1,RP11-116O11.2,RP11-12P19.2,RP11-12P19.1,SNORD29,RP11-730N24.1,DNAJC21,RP11-730N24.2,RP11-549K20.1,RP11-184E9.1,RP11-192H6.2,RP11-184E9.2,CTD-2306M5.1,RNU6-374P,MSNP1,RNU4-43P,RP11-351N6.1,CTD-2533K21.3,CTD-2533K21.2,CTD-2533K21.1,CTD-2533K21.4,CTD-2194F12.1,RNU6-738P,CTD-3007L5.1,SLC1A3,LINC01021,AC010455.1,RP11-560A7.1,CTD-2061E9.1,RNU6-909P,CTD-2134P3.1,CTD-2134P3.2,CTD-2269E23.3,LSP1P3,CTD-2269E23.2,SUCLG2P4,AC008964.1,SNORA18,RP11-42L13.2,RP11-42L13.3,C9,CTD-2118P12.1,CTD-2010I22.2,UBL5P1,CTD-2011G17.1,CTD-2057J6.2,CTD-2057J6.1,RN7SKP207,RP11-136H13.1,RP11-136H13.2,RPL19P11,CTD-2127O16.2,RP11-152K4.2,DAB2,AGXT2,GOLPH3,NIPBL,MTMR12,PRLR,PTGER4,TTC33,PRKAA1,FAM105A,FAM105B,ANKH,C5orf42,RPL37,ZFR,CARD6,C7,FBXL7,11-Mar,MROH2B,ZNF622,FAM134B,MYO10,SUB1,NPR3,C6,AC026703.1,TARS,PLCXD3,OXCT1,C5orf51,FBXO4,GHR,CCDC152,SEPP1,ANXA2R,ZNF131,NIM1K,HMGCS1,CCL28,C5orf28,C5orf34,PAIP1,NNT ENSG00000169862 chr5 10971952 11904155 -1 - NA - - - - - -
Organoid_013 MantaDEL:61442:0:1:0:0:0 DEL chr5 17625424 17625428 + chr5 17827291 17827295 - 77 PASS 11 0 10 0 - - CDH18 CDH18 - - 3' RP11-454P21.1 - - - - - - - - 9 RP11-432M8.11,RP11-432M8.12,RP11-432M8.13,RP11-432M8.15,RP11-432M8.14,RP11-432M8.16,RP11-432M8.18,RP11-432M8.17,RP11-432M8.19 - NA - - - ENSG00000249937 chr5 17684693 17955966 1 - - -
Organoid_013 MantaDEL:66040:0:1:0:0:0 DEL chr5 86487299 86487303 + chr5 87400271 87400275 - 70 PASS 9 0 4 0 - - - - - - - - - - - - - - - - 9 RN7SL629P,RNU6-606P,CTC-428H11.2,RNU6-727P,CTD-2316B1.1,CTD-2316B1.2,AC008394.1,RASA1,CCNH - NA - - - - NA - - - - - -
Organoid_013 MantaDEL:75866:0:1:0:0:0 DEL chr6 45820943 45820947 + chr6 45821510 45821511 - 46 PASS 4 0 7 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaDEL:76086:0:1:0:0:0 DEL chr6 48828534 48828538 + chr6 48846102 48846106 - 81 PASS 13 0 7 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaDEL:80863:0:1:0:0:0 DEL chr6 121779612 121779613 + chr6 122222105 122222106 - 67 PASS 9 0 5 0 - - - - - - - - - - - - - - - - 8 RP1-172I22.1,RNU4-76P,RNU2-8P,RP11-129H15.1,SLC25A5P7,RP11-129H15.3,RP11-129H15.4,HMGB3P18 - NA - - - - NA - - - - - -
Organoid_013 MantaDEL:81258:0:1:0:0:0 DEL chr6 128357827 128357829 + chr6 128581184 128581186 - 79 PASS 7 0 8 0 - - - - 3' PTPRK 5' PTPRK INTERNL 20 EXONS DELETED - - INTERNL 20 EXONS DELETED - 4 0 - ENSG00000152894 chr6 128289924 128841870 -1 ENSG00000152894 chr6 128289924 128841870 -1 - - -
Organoid_013 MantaDEL:81258:0:1:0:0:0 DEL chr6 128357827 128357829 + chr6 128581184 128581186 - 79 PASS 7 0 8 0 - - - - 5' RP11-103C16.2 5' PTPRK - - - - - - - 4 0 - ENSG00000227945 chr6 128349031 128406393 1 ENSG00000152894 chr6 128289924 128841870 -1 - - -
Organoid_013 MantaDEL:83180:0:1:0:0:0 DEL chr6 157153872 157153873 + chr6 157507152 157507153 - 140 PASS 25 0 18 0 - - - - 5' ARID1B 3' ARID1B INTERNL 24 EXONS DELETED - - INTERNL 24 EXONS DELETED - - 2 RP11-2J18.1,RP1-137K2.2 ENSG00000049618 chr6 157099063 157531913 1 ENSG00000049618 chr6 157099063 157531913 1 - - -
Organoid_013 MantaDEL:88127:0:1:0:0:0 DEL chr7 49553416 49553419 + chr7 49602108 49602111 - 48 PASS 5 0 4 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaDEL:92587:0:1:0:0:0 DEL chr7 110052996 110052998 + chr7 110091448 110091450 - 60 PASS 10 0 3 0 - - IMMP2L IMMP2L - - 5' AC003088.1 - - - - - - - - 0 - - NA - - - ENSG00000226965 chr7 110072296 110174811 -1 - - -
Organoid_013 MantaDEL:94187:0:1:0:0:0 DEL chr7 131474125 131474126 + chr7 151993889 151993890 - 72 PASS 8 0 10 0 - - EXOC4 - - - 5' KMT2C - - - - - - - 2 457 CCT4P1,RP4-813F11.4,RNU4-74P,RP5-1173P7.1,RP5-914M6.1,RP5-842K16.1,RP5-842K16.2,RP11-744I24.3,RP11-744I24.2,RP5-894A10.2,KDM7A,OR9A2,OR6V1,PIP,TAS2R39,LRRC61,ZBED6CL,RP5-894A10.6,RARRES2,WEE2-AS1,RNU1-82P,TAS2R6,RP5-1154E9.7,MTND2P5,TAS2R40,AC073342.1,MTND1P3,MYL6P4,AC073647.1,OR9A3P,OR9A1P,GSTK1,OR9N1P,MOXD2P,REPIN1,SLC37A3,U66059.29,U66059.58,PRSS3P3,TRBV1,TRBV7-5,TRBV12-2,TRBV11-2,TRBV12-1,TRBV8-2,TRBV5-2,TRBV8-1,TRBV21-1,TRBV22-1,TRBVA,ZNF775,TRBV26,TRBVB,PGBD4P1,PRSS3P1,TMEM139,GIMAP8,AGBL3,GIMAP7,PRSS3P2,WBP1LP1,RP11-114L10.2,OR9P1P,OR6W1P,AC073342.12,RN7SL535P,RN7SL481P,HINT1P1,CASP2,C7orf49,GIMAP4,GIMAP6,GIMAP2,GIMAP1,GIMAP5,RP11-563K23.1,AC093673.5,EPHA1-AS1,TAS2R62P,OR2R1P,AC073264.10,PAICSP5,TMEM176B,TMEM140,AC083862.1,WDR91,CLCN1,CTAGE15,RNU6-162P,AC073264.6,RAB19,MKRN1,FAM115B,RNU6-267P,RP11-61L23.2,TMEM176A,PAICSP6,RP11-307I2.1,FAM115D,RP4-669B10.3,RP4-669B10.6,OR2Q1P,SLC16A1P1,OR2A41P,OR2A15P,OR2A13P,OR2A3P,FAM131B,OR2AO1P,AC004889.1,RP4-545C24.1,OR2A20P,DENND2A,OR2A1-AS1,AOC1,ZYX,ARHGEF34P,OR2A9P,RP4-545C24.5,RNU6ATAC40P,EEF1A1P10,RN7SKP174,EI24P4,KCNH2,AC073310.4,ADCK2,RPL7P59,AC004911.2,AC073055.2,AC006007.1,RN7SL207P,AC084872.1,AC006004.1,DUTP3,RANP2,MIR548F4,AC005518.2,STRA8,CNOT4,RP4-777G9.1,RNU6-1184P,RNA5SP249,RN7SL456P,U3,RN7SL72P,AC005229.5,AC005229.7,RP5-1136G13.1,RP5-1136G13.2,AC005229.1,RNU7-20P,RN7SL569P,RNY5,RNY4,RNY3,RNY1,RNU6-650P,COX6B1P1,RN7SL521P,RP4-800G7.1,RP4-800G7.3,RP4-800G7.2,NDUFB2,NOS3,SNORD112,AC004941.5,NPM1P12,AC004941.3,EPHA1,RP11-143I21.1,NUP205,ZNF767,BRAF,TAS2R60,TAS2R41,OR10AC1P,SSPO,FAM115C,MRPS33,TMEM178B,AGK,CTAGE6,FAM115A,C7orf73,SLC13A4,FAM180A,OR2F2,OR2F1,OR6B1,MTPN,AC015987.2,LUZP6,CHRM2,KIAA1147,RP4-751H13.7,ATP6V0E2-AS1,RP11-445N20.3,RP11-728K20.3,OR2A5,OR2A25,OR2A12,OR2A2,OR2A14,CTAGE4,ARHGEF35,OR2A42,OR2A7,CTAGE8,PTN,OR2A1,ARHGEF5,ABCB8,DGKI,RP11-728K20.1,RP11-728K20.2,WEE2,SSBP1,RP11-545G3.1,RP4-584D14.7,RP4-584D14.5,RP4-584D14.6,LINC00996,RP11-511P7.4,STRADBP1,ALDH7A1P3,RP11-632K21.7,RP11-632K21.3,RP11-632K21.6,RP5-1051J4.6,NOBOX,RP5-1051J4.4,TAS2R3,TAS2R4,TAS2R5,ATG9B,PRSS37,TPK1,MGAM,CREB3L2,CNTNAP2,AKR1D1,OR9A4,CLEC5A,TAS2R38,RP11-1220K2.2,ASIC3,TRIM24,RP11-148K1.10,PRSS58,RP11-148K1.12,IQCA1P1,MIR671,RP4-548D19.3,RP5-1070G24.2,WDR86-AS1,RP4-555L14.4,MIR3907,RN7SL76P,ETF1P2,RP13-452N2.1,PRKAG2-AS1,RNU6-604P,Y_RNA,RP11-796I2.1,snoU13,RP5-981O7.2,YBX1P4,C7orf33,SVOPL,CUL1,CDK5,TRBV2,ATP6V0A4,TRBV3-1,TRBV4-1,TRBV5-1,TRBV6-1,TRBV7-1,TRBV4-2,TRBV7-8,TRBV6-9,TRBV5-7,TRBV7-7,TRBV6-8,TRBV5-6,TRBV7-6,TRBV6-7,TRBV5-5,TRBV6-6,TRBV5-4,TRBV7-4,TRBV6-5,TRBV10-2,TRBV11-1,TRBV10-1,TRBV9,TRBV5-3,TRBV7-3,TRBV6-4,TRBV19,TRBV20-1,TRBV23-1,EZH2,TRBV24-1,MTRNR2L6,TRBV25-1,TMEM213,TRBV27,TRBV28,TRBV29-1,PRSS1,KIAA1549,TRBJ2-1,TRBJ2-2,TRBJ2-2P,TRBJ2-3,TRBJ2-4,TRBJ2-5,TRBJ2-6,TRBJ2-7,TRBC2,TRBV30,SLC4A2,EPHB6,PDIA4,ZNF786,ZNF425,TRPV6,ZC3HAV1L,ZNF398,ZC3HAV1,ZNF282,TRPV5,ZNF212,TTC26,C7orf34,FASTK,ZNF783,ZNF777,ZNF746,KEL,TMUB1,AGAP3,KRBA1,ZNF467,ZNF862,ATP6V0E2,UBN2,C7orf55,C7orf55-LUC7L2,GBX1,ASB10,ACTR3C,ABCF2,LUC7L2,KLRG2,CLEC2L,HIPK2,TBXAS1,AC008085.1,AC009518.2,AC009518.3,AC009518.4,snosnR60_Z15,AC105443.2,AC018643.4,AC011625.1,SNORD46,AC009365.4,AC009518.8,U6,AC083873.4,AC083875.1,AC083875.2,COX5BP3,AC007790.4,AC008154.4,AC008154.5,RP11-38M8.1,AC009276.4,TUBB3P2,AC083862.6,RP11-134L10.1,AC009542.2,SDHDP2,RP11-751K21.1,AC093107.7,RNU6-1154P,RP11-644N4.1,AC091736.1,AC015987.1,RNU6-223P,AC024084.1,AC009784.3,AC009784.1,AC009784.4,CHPF2,AC009541.1,hsa-mir-490,SMARCD3,PSMC1P3,MIR490,KRT8P51,AC009517.2,PARP12,SNORD81,AC078842.4,AC078842.3,AC009245.3,AC022173.2,AC009263.2,AC024082.3,AC024082.4,AC024082.1,RN7SKP223,RCC2P3,MIR4468,AC083867.4,NUB1,SNORA51,AC008155.2,AC008155.1,AC008265.2,AC013429.5,SNORA40,AC013429.4,AC020983.5,UQCRFS1P2,RNU6-1272P,RP11-383F6.1,RP11-365F18.3,RP11-365F18.6,RP11-365F18.1,RP11-365F18.5,RNU6-206P,RP11-634H22.1,RNU6-911P,RP4-701O16.5,ERHP1,JHDM1D-AS1,RNU6-797P,RNU1-58P,RP5-1136G2.1,PPP1R2P6,RNA5SP247,RNA5SP248,RP11-723C11.2,AC006452.1,RN7SL771P,NDUFB2-AS1,RP4-813F11.3,WDR86,CRYGN,RHEB,PRKAG2,GALNTL5,GALNT11 - NA - - - ENSG00000055609 chr7 151832010 152133090 -1 - - -
Organoid_013 MantaDEL:94808:1:3:0:0:0 DEL chr7 139864109 139864113 + chr7 140024402 140024406 - 62 PASS 5 0 9 0 - - - - 3' KDM7A 5' SLC37A3 FUSION- 5' of SLC37A3 into 3' of KDM7A - - FUSION- 5' of SLC37A3 into 3' of KDM7A - 28 5 JHDM1D-AS1,RNU6-797P,RNU1-58P,RP5-1136G2.1,PPP1R2P6 ENSG00000006459 chr7 139784546 139876835 -1 ENSG00000157800 chr7 139993493 140104233 -1 - - -
Organoid_013 MantaDEL:95667:0:1:0:0:0 DEL chr7 152021845 152021850 + chr7 154516902 154516907 - 54 PASS 6 0 3 0 - - - - 3' KMT2C 3' DPP6 - - - - - - - - 26 RP11-208G20.3,RP11-208G20.2,SEPT7P6,Y_RNA,FABP5P3,AC005631.1,CCT8L1P,LINC01003,AC104843.4,RNA5SP250,snoU13,AC104843.3,SNORA26,RN7SL811P,ATP5F1P3,RN7SL845P,AF104455.1,AC079809.2,AC073236.3,AC091652.2,AC005588.2,RP5-1048B16.1,AC006019.3,AC006019.4,XRCC2,ACTR3B ENSG00000055609 chr7 151832010 152133090 -1 ENSG00000130226 chr7 153584182 154685995 1 - - -
Organoid_013 MantaDEL:96693:1:2:0:0:0 DEL chr8 77856677 77856682 + chr8 77938105 77938110 - 55 PASS 3 0 8 0 - - - - - - - - - - - - - - - - 2 hsa-mir-3149,HIGD1AP18 - NA - - - - NA - - - - - -
Organoid_013 MantaDEL:97926:0:1:0:0:0 DEL chr8 17034287 17034291 + chr8 18605598 18605602 - 31 PASS 2 0 2 0 - - - - 5' ZDHHC2 5' PSD3 - - - - - - - 11 27 RP11-242F4.2,ADAM24P,MIR548V,RP11-326L2.1,RNA5SP256,RP11-156K13.1,RP11-806O11.1,RP11-156K13.2,RP11-156K13.3,CTD-2547L16.1,CTD-2547L16.3,CTD-2547L16.2,NATP,RP11-685B14.1,RP11-685B14.3,RP11-161I2.1,CNOT7,VPS37A,MTMR7,SLC7A2,PDGFRL,MTUS1,FGL1,PCM1,ASAH1,NAT1,NAT2 ENSG00000104219 chr8 17013538 17082308 1 ENSG00000156011 chr8 18384811 18942240 -1 - - -
Organoid_013 MantaDEL:98082:0:1:0:0:0 DEL chr8 19199020 19199023 + chr8 22445420 22445423 - 111 PASS 17 0 8 0 - - - - 5' SH2D4A 3' PDLIM2 FUSION+ 5' of SH2D4A into 3' of PDLIM2 - - FUSION+ 5' of SH2D4A into 3' of PDLIM2 - - 56 RP11-1105O14.1,AC100802.3,RPL30P9,RNU6-892P,LZTS1-AS1,RP11-563N12.2,RP11-404E12.1,U3,RP11-108E14.1,TMEM97P2,RP11-369E15.1,RP11-369E15.3,RP11-369E15.4,RP11-369E15.2,RP11-421P23.1,RP11-421P23.2,AC021613.1,RP11-24P4.1,AC009695.1,AC022716.1,OR6R2P,snoU13,AC091171.1,AC105206.1,MIR320A,CTD-2530N21.4,CTD-2036J7.1,RNU6-336P,RP11-382J24.2,RP11-582J16.4,RP11-582J16.3,CSGALNACT1,INTS10,LPL,SLC18A1,ATP6V1B2,LZTS1,GFRA2,DOK2,XPO7,NPM2,FGF17,DMTN,FAM160B2,NUDT18,HR,REEP4,LGI3,SFTPC,BMP1,PHYHIP,POLR3D,PIWIL2,SLC39A14,PPP3CC,SORBS3 ENSG00000104611 chr8 19171128 19253729 1 ENSG00000120913 chr8 22435792 22455538 1 - - -
Organoid_013 MantaDEL:99560:0:1:0:0:0 DEL chr8 40456752 40456753 + chr8 69602554 69602555 - 85 PASS 14 0 12 0 - - - - 3' ZMAT4 3' C8orf34 - - - - - - - - 405 RP11-567J20.3,RP11-770E5.1,RP11-567J20.2,AC026904.1,RP11-567J20.1,RP11-770E5.3,RP11-770E5.2,RP11-22C8.1,RP11-10H3.1,RN7SKP294,RFPL4AP7,RP11-738G5.1,PSAT1P1,RP11-109P6.2,RP11-401N18.1,RP11-759A9.1,RP11-759A9.2,CYCSP22,RP11-139G7.1,SNORA7,RP11-401H2.1,RP11-119N19.1,RP11-11C20.1,RP11-11C20.3,RP11-110G21.2,RP11-110G21.1,RP11-546K22.3,RP11-546K22.1,RP11-546K22.2,RP11-26M5.3,RP11-26M5.2,RP11-1023P17.2,RPL34P17,CTD-3214K23.1,RP11-182E14.1,AC009800.1,AC016113.1,RP11-162D9.1,RP11-162D9.3,RP11-1081M5.2,RP11-1081M5.1,RP11-400K9.3,RP11-400K9.4,RP11-400K9.1,RP11-400K9.2,RP11-463C14.1,RP11-1070A24.2,RP11-1070A24.1,RNU6-1331P,RP11-30L15.4,RP11-30L15.6,TDGF1P5,RNU6ATAC32P,RP11-626A5.2,RP11-767C6.1,RNU105C,RN7SL250P,RP11-53M11.4,RP11-53M11.2,RP11-53M11.3,RP11-56A10.1,RP11-550I15.1,SBF1P1,RP11-628E19.2,AC100817.1,RNA5SP265,RP11-318K15.2,SNORA1,AC018607.1,RN7SL798P,RP11-446E9.2,RN7SL323P,RP11-446E9.1,SNORD54,CTA-397H3.3,NPM1P21,SNORA3,RP11-140I16.3,RP11-140I16.2,SDR16C6P,RP11-17A4.2,SEPT10P1,LINC00968,RP11-17A4.3,RP11-17A4.1,RP11-17A4.4,RP11-33E15.1,RNU6-13P,AC032027.1,RNA5SP266,RP11-513O17.2,AC025674.1,RP11-513O17.1,RP11-513O17.3,LINC00588,RNU6-596P,RP11-756K15.2,RPL30P10,RP11-246K15.1,RNU7-174P,RP11-388G22.1,CTD-2339F6.1,RP11-44D19.1,RP11-1112C15.1,RP11-1112C15.2,RP11-648L3.2,RP11-648L3.1,RP11-716D16.1,RP11-114M5.1,RP11-114M5.3,AC068522.4,snoU13,RNU4-50P,RP11-328K2.1,RP11-25K19.1,SNORA51,RNA5SP267,RP11-379I19.2,RP11-379I19.1,RP11-379I19.3,RP11-960H2.2,RP11-960H2.1,RP11-27P7.1,SLC2A13P1,RP11-163N6.2,PDCL3P1,AC022555.1,RNU6-1202P,RP11-91I20.4,RP11-91I20.3,RP11-91I20.2,RP11-91I20.1,RP11-33I11.2,RP11-33I11.3,AC022182.1,AC022182.2,AC022182.3,NPM1P6,RP11-787D18.2,RP11-787D18.1,KRT8P3,RN7SKP97,MIR4470,RP11-280G9.1,RP11-705O24.1,RP11-705O24.3,RP11-705O24.2,RP11-705O24.4,CTD-2571E19.1,CTD-2571E19.3,RP11-577N1.1,RP11-577N1.2,XRCC6P4,RP11-442A17.2,RP11-659E9.2,RP11-659E9.4,RP11-16E18.1,YTHDF3-AS1,RP11-16E18.3,RN7SL135P,CTD-3046C4.1,IFITM8P,RP11-45K10.2,RP11-573J24.1,RN7SKP135,RP11-32K4.1,RP11-579E24.2,RP11-579E24.1,COX6CP8,LINC00966,MIR124-2,RP11-21C4.4,RP11-21C4.5,RP11-465K16.1,RNU6-356P,MIR548AO,RPS29P2,CTD-3080F16.3,RNU6-895P,SNORD65,RP11-21C4.1,RP11-15G16.1,KRT18P37,RP11-1D12.1,RP11-1D12.2,RP11-360L9.4,RP11-89A16.1,RPL31P41,RP11-678D18.1,CTD-3025N20.2,CTD-3025N20.3,Y_RNA,RP11-707M3.3,CTD-2532N20.1,AC084082.3,LINC00967,RP11-346I3.4,RP11-346I3.2,RNU6-1324P,PTTG3P,SNHG6,RP11-360L9.7,RP11-360L9.8,MIR486,RP11-930P14.1,SNORD87,RP11-409C19.2,AC109335.1,RNA5SP268,RP11-453N18.1,RP11-7F18.2,RP11-7F18.1,RP11-343B22.2,AC022861.1,RP11-396J6.1,NDUFS5P6,RP11-403D15.2,RP11-930P14.2,RP11-403D15.1,RPL31P40,RN7SL149P,RPS15AP25,AC090571.1,SNORD112,RP11-589C21.1,RP11-589C21.2,RP11-589C21.6,RP11-589C21.5,RP11-231D20.2,RPL5P23,RP11-1007J8.1,RP11-503E24.2,RP11-503E24.3,RP11-412B14.1,RP11-412B14.2,RN7SL806P,MIR4469,RNU1-124P,RP11-598P20.3,VN1R46P,RP11-726G23.2,RP11-726G23.11,RP11-359P18.2,RP11-726G23.3,AFG3L2P1,RP11-726G23.7,RP11-726G23.10,RP11-726G23.8,POTEA,RNU6-104P,RP11-726G23.12,AC022616.1,RP11-726G23.6,U3,RN7SKP41,RP11-359P18.1,RP11-359P18.7,RP11-359P18.8,SNX18P27,RP11-359P18.5,CYP4F44P,RP11-359P18.6,AC134698.1,RP11-643N23.2,RP11-643N23.1,AC113134.1,HSPA8P13,ASNSP1,RP11-790L1.3,ASNSP4,RP11-101E19.8,TRIM60P15,LINC00293,MTND1P7,RNU6-656P,RP11-101E19.4,MTND6P20,RP11-101E19.7,RP11-350F16.1,RP11-350F16.2,MAPK6PS4,RN7SKP32,AC026241.1,RP11-1134I14.2,RNU6-819P,RPL10AP2,NDUFA5P12,RP11-1134I14.4,RP11-1134I14.8,ATP6V1G1P2,RP11-1134I14.6,IGLV8OR8-1,RP11-697N18.3,RP11-697N18.4,RP11-697N18.1,RP11-697N18.2,RNU6-665P,AC103686.1,RNU6-519P,RP11-769N21.2,CTD-2210A23.1,RNU6-295P,RPL29P19,SFRP1,GOLGA7,GINS4,AGPAT6,NKX6-3,ANK1,KAT6A,AP3M2,PLAT,IKBKB,POLB,DKK4,VDAC3,SLC20A2,SMIM19,CHRNB3,CHRNA6,THAP1,RNF170,HOOK3,RP11-598P20.5,FNTA,POMK,HGSNAT,SPIDR,CEBPD,PRKDC,MCM4,UBE2V2,EFCAB1,SNAI2,C8orf22,RP11-738G5.2,SNTG1,PXDNL,PCMTD1,AC090186.1,ST18,FAM150A,RB1CC1,NPBWR1,OPRK1,ATP6V1H,RGS20,TCEA1,LYPLA1,MRPL15,SOX17,RP1,XKR4,RP11-386G21.1,RP11-386G21.2,TMEM68,TGS1,LYN,RPS20,MOS,PLAG1,CHCHD7,SDR16C5,PENK,IMPAD1,FAM110B,UBXN2B,CYP7A1,SDCBP,NSMAF,TOX,CA8,RAB2A,CHD7,CLVS1,ASPH,NKAIN3,GGH,TTPA,YTHDF3,BHLHE22,CYP7B1,ARMC1,MTFR1,PDE7A,DNAJC5B,TRIM55,CRH,RRS1,ADHFE1,C8orf46,MYBL1,VCPIP1,C8orf44-SGK3,C8orf44,SGK3,MCMDC2,TCF24,PPP1R42,COPS5,CSPP1,ARFGEF1,CPA6,PREX2,RP11-664D7.4 ENSG00000165061 chr8 40388109 40755352 -1 ENSG00000165084 chr8 69242957 69731257 1 - - -
Organoid_013 MantaDEL:101056:0:2:0:0:0 DEL chr8 68671289 68671743 + chr8 77864162 77864710 - 39 PASS 7 0 0 0 - - - - - - - - - - - - - - - - 122 NDUFS5P6,RP11-403D15.2,RP11-403D15.1,Y_RNA,RPL31P40,RPS15AP25,RNA5SP269,RP11-865I6.2,RP11-600K15.1,RNU7-102P,GS1-44D20.1,RP11-21C17.1,RP11-744J10.3,RP11-744J10.2,RN7SKP29,RP11-102F4.2,RP11-159H10.4,RP11-159H10.3,RP11-159H10.1,RN7SL675P,RNA5SP270,SDCBPP2,SUMO2P20,RNU1-101P,RP11-152C15.1,BTF3P12,RP11-333A23.1,Metazoa_SRP,RP11-333A23.4,RP11-333A23.2,snoU13,RN7SL19P,RP11-326E22.1,TRAPPC2P2,AC099805.1,RP11-1144P22.1,RP11-281N10.1,U8,AC104012.1,RPS20P20,RP11-142A23.1,RP11-656G20.1,RNA5SP271,RP11-351E7.2,RP11-351E7.1,HAUS1P3,RP11-313C15.1,RP11-1145L24.1,RP11-531A24.3,RNU6-285P,RP11-531A24.7,RP11-531A24.5,RP11-956J14.1,RP11-956J14.2,RP11-434I12.5,RP11-434I12.2,RP11-434I12.3,RP11-434I12.4,STAU2-AS1,RP11-181D18.4,RP11-116B19.2,VENTXP6,RP11-463D19.1,RP11-99A14.1,GYG1P1,RPS20P21,RP11-367E12.4,RNU6-1300P,RP11-6I2.3,RPS3AP32,RNU6-1197P,RP11-6I2.4,RP1-16A9.1,CTD-2320G14.2,MIR5681A,RP11-730G20.2,RP11-730G20.1,RP11-758M4.4,RP11-758M4.3,RP11-3N13.2,RP11-300E4.2,RP11-697M17.2,CASC9,HIGD1AP6,PKMP4,AC016194.1,RNU2-54P,RP11-706J10.2,LINC01109,LINC01111,ZFHX4-AS1,RP11-115I9.1,MRPL9P1,RP11-48D4.2,PREX2,RP11-664D7.4,C8orf34,SULF1,SLCO5A1,AC090574.1,PRDM14,NCOA2,TRAM1,AC120194.1,RP11-382J12.1,LACTB2,XKR9,EYA1,RP11-1102P16.1,RP11-383H13.1,MSC,TRPA1,KCNB2,TERF1,SBSPON,RPL7,RDH10,STAU2,RP11-463D19.2,UBE2W,TCEB1,TMEM70 - NA - - - - NA - - - - - -
Organoid_013 MantaDEL:101800:0:1:0:0:0 DEL chr8 79964547 79964550 + chr8 80229493 80229496 - 85 PASS 15 0 10 0 - - - - - - - - - - - - - - - - 2 AC009941.1,RP11-1114I9.1 - NA - - - - NA - - - - - -
Organoid_013 MantaDEL:101992:0:1:0:0:0 DEL chr8 83025245 83025246 + chr8 85276233 85276234 - 138 PASS 34 0 20 0 - - - - 3' RP11-99H20.1 - - - - - - - - - - 12 HNRNPA1P4,RP11-653B10.1,RP11-731N10.1,CTD-2272D18.1,CTD-2272D18.2,RP11-296C13.1,RP11-813B8.1,RP11-51M18.1,RP11-120I21.2,TPM3P3,RP11-120I21.3,AC103816.1 ENSG00000254123 chr8 83010686 83072812 -1 - NA - - - - - -
Organoid_013 MantaDEL:105126:0:1:0:1:0 DEL chr8 130378160 130378164 + chr8 131590993 131590997 - 54 PASS 6 0 1 0 - - - - 3' CCDC26 - - - - - - - - - - 22 RP11-26E5.1,MIR3686,hsa-mir-3673,AC011652.2,AC011652.1,AC016178.1,hsa-mir-3669,AC016178.2,RP11-419K12.1,RP11-274M4.1,RP11-473O4.5,RP11-473O4.1,SNORA25,RP11-473O4.4,RP11-473O4.3,RNU7-181P,MIR5194,RNU6-1255P,AC131568.1,SNORA12,GSDMC,FAM49B ENSG00000229140 chr8 130363937 130692485 -1 - NA - - - - - -
Organoid_013 MantaDEL:107645:0:1:0:0:0 DEL chr9 19945005 19945008 + chr9 19998912 19998915 - 54 PASS 6 0 5 0 - - - - - - - - - - - - - - - - 1 RP11-378I6.2 - NA - - - - NA - - - - - -
Organoid_013 MantaDEL:108377:0:1:0:0:0 DEL chr9 30390737 30390741 + chr9 30448351 30448355 - 51 PASS 6 0 4 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaDEL:108700:0:1:0:0:0 DEL chr9 35235826 35235828 + chr9 35294702 35294704 - 68 PASS 10 0 8 0 - - - - 5' UNC13B 3' UNC13B INTERNL 6 EXONS DELETED - - INTERNL 6 EXONS DELETED - - 0 - ENSG00000198722 chr9 35161999 35405335 1 ENSG00000198722 chr9 35161999 35405335 1 - - -
Organoid_013 MantaDEL:118292:0:0:0:0:0 DEL chr10 56946989 56946991 + chr10 56947424 56947425 - 64 PASS 4 0 11 0 - - - - 3' PCDH15 5' PCDH15 INTERNL 0 EXONS DELETED - - INTERNL 0 EXONS DELETED - - 0 - ENSG00000150275 chr10 55562531 57387702 -1 ENSG00000150275 chr10 55562531 57387702 -1 - - -
Organoid_013 MantaDEL:121480:0:1:0:0:0 DEL chr10 106998105 106998109 + chr10 106998793 106998794 - 47 PASS 3 0 7 0 - - - - 5' SORCS3 3' SORCS3 INTERNL 0 EXONS DELETED - 1 INTERNL 0 EXONS DELETED - - 0 - ENSG00000156395 chr10 106400859 107024993 1 ENSG00000156395 chr10 106400859 107024993 1 - - -
Organoid_013 MantaDEL:123908:0:0:0:0:0 DEL chr11 5110605 5110607 + chr11 5110707 5110708 - 42 PASS 0 0 6 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaDEL:129081:0:1:0:0:0 DEL chr11 81586957 81586958 + chr11 81588382 81588383 - 79 PASS 10 0 10 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaDEL:129538:0:1:0:0:0 DEL chr11 88547802 88547806 + chr11 89156724 89156728 - 86 PASS 8 0 9 0 - - DLG2 DLG2 - - - - - - - - - - - - 2 AP001482.1,CBX3P7 - NA - - - - NA - - - - - -
Organoid_013 MantaDEL:134087:0:1:0:0:0 DEL chr12 18519152 18519153 + chr12 18644283 18644284 - 84 PASS 11 0 7 0 - - - - 5' PIK3C2G 3' PIK3C2G INTERNL 9 EXONS DELETED - 2 INTERNL 9 EXONS DELETED - - 1 RP11-459D22.1 ENSG00000139144 chr12 18400548 18801348 1 ENSG00000139144 chr12 18400548 18801348 1 - - -
Organoid_013 MantaDEL:134550:0:1:0:0:0 DEL chr12 23238088 23238089 + chr12 23247653 23247654 - 54 PASS 44 0 33 0 - - SOX5 SOX5 5' RP11-114G22.1 3' RP11-114G22.1 INTERNL 0 EXONS DELETED - 7 INTERNL 0 EXONS DELETED - - 0 - ENSG00000256995 chr12 22852793 23327057 1 ENSG00000256995 chr12 22852793 23327057 1 - - -
Organoid_013 MantaDEL:136221:0:1:0:0:0 DEL chr12 41383444 41383449 + chr12 41428836 41428841 - 94 PASS 16 0 12 0 - - - - 5' CNTN1 3' CNTN1 INTERNL 10 EXONS DELETED - 7 INTERNL 10 EXONS DELETED - - 0 - ENSG00000018236 chr12 41086244 41466220 1 ENSG00000018236 chr12 41086244 41466220 1 - - -
Organoid_013 MantaDEL:144434:0:1:0:0:0 DEL chr13 37633645 37633648 + chr13 37655353 37655356 - 51 PASS 6 0 4 0 - - - - 3' SUPT20H - - - - - - - - - - 0 - ENSG00000102710 chr13 37583449 37633850 -1 - NA - - - - - -
Organoid_013 MantaDEL:150854:0:1:0:0:0 DEL chr14 28626723 28626724 + chr14 28628482 28628483 - 71 PASS 12 0 12 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaDEL:151862:0:1:0:0:0 DEL chr14 43391782 43391784 + chr14 43397426 43397428 - 38 PASS 5 0 4 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaDEL:153467:0:1:0:0:0 DEL chr14 66010080 66010656 + chr14 66114281 66114993 - 74 PASS 15 0 0 0 - - - - 5' FUT8 3' FUT8 INTERNL 15 EXONS DELETED - 2 INTERNL 15 EXONS DELETED - - 0 - ENSG00000033170 chr14 65877310 66210839 1 ENSG00000033170 chr14 65877310 66210839 1 - - -
Organoid_013 MantaDEL:153557:0:1:0:0:0 DEL chr14 66897883 66897885 + chr14 66897955 66897956 - 44 PASS 0 0 7 0 - - - - 3' RP11-72M17.1 5' RP11-72M17.1 INTERNL 0 EXONS DELETED - - INTERNL 0 EXONS DELETED - 1 0 - ENSG00000258561 chr14 66679528 66976112 -1 ENSG00000258561 chr14 66679528 66976112 -1 - - -
Organoid_013 MantaDEL:155026:0:1:0:0:0 DEL chr14 87546944 87546949 + chr14 89235327 89235332 - 60 PASS 5 0 8 0 - - - - - - 5' EML5 - - - - - - - - 24 RP11-325D8.1,CTD-2007A10.1,RP11-1152H15.1,RP11-804L24.2,FAM35CP,RNU6-835P,RP11-300J18.2,RP11-300J18.1,LINC01146,RP11-753D20.1,RP11-753D20.4,RP11-753D20.3,RP11-507K2.2,RNU4-22P,RP11-507K2.3,RP11-1141N12.1,RP11-594C13.2,RP11-594C13.1,GALC,GPR65,KCNK10,SPATA7,PTPN21,ZC3H14 - NA - - - ENSG00000165521 chr14 89078775 89259096 -1 - - -
Organoid_013 MantaDEL:156092:0:1:0:1:0 DEL chr14 103325803 103325805 + chr14 104149864 104149866 - 64 PASS 10 0 4 0 - - - - 5' TRAF3 3' KLC1 FUSION+ 5' of TRAF3 into 3' of KLC1 - - FUSION+ 5' of TRAF3 into 3' of KLC1 - - 35 RNU6-1316P,AL117209.1,RP11-365N19.2,RPL13P6,RP11-736N17.8,LINC00677,RP11-736N17.4,RPL21P12,GCSHP2,LINC00605,AL161669.1,RP11-736N17.9,RPL21P13,RAP2CP1,RP11-45P15.2,RP11-45P15.4,SNORA28,HMGB3P26,RP11-600F24.1,RP11-600F24.2,RP11-600F24.7,RNU7-160P,RP11-894P9.2,RNU4-68P,AL139300.1,AMN,CDC42BPB,EXOC3L4,TNFAIP2,EIF5,MARK3,CKB,TRMT61A,BAG5,APOPT1 ENSG00000131323 chr14 103243813 103377837 1 ENSG00000126214 chr14 104028233 104167888 1 - - -
Organoid_013 MantaDEL:156092:0:1:0:1:0 DEL chr14 103325803 103325805 + chr14 104149864 104149866 - 64 PASS 10 0 4 0 - - - - 5' TRAF3 3' RP11-73M18.2 FUSION+ 5' of TRAF3 into 3' of RP11-73M18.2 - - FUSION+ 5' of TRAF3 into 3' of RP11-73M18.2 - - 35 RNU6-1316P,AL117209.1,RP11-365N19.2,RPL13P6,RP11-736N17.8,LINC00677,RP11-736N17.4,RPL21P12,GCSHP2,LINC00605,AL161669.1,RP11-736N17.9,RPL21P13,RAP2CP1,RP11-45P15.2,RP11-45P15.4,SNORA28,HMGB3P26,RP11-600F24.1,RP11-600F24.2,RP11-600F24.7,RNU7-160P,RP11-894P9.2,RNU4-68P,AL139300.1,AMN,CDC42BPB,EXOC3L4,TNFAIP2,EIF5,MARK3,CKB,TRMT61A,BAG5,APOPT1 ENSG00000131323 chr14 103243813 103377837 1 ENSG00000256500 chr14 104029299 104152261 1 - - -
Organoid_013 MantaDEL:156092:0:1:0:1:0 DEL chr14 103325803 103325805 + chr14 104149864 104149866 - 64 PASS 10 0 4 0 - - - - 5' TRAF3 5' RP11-894P9.1 - - - - - - - - 35 RNU6-1316P,AL117209.1,RP11-365N19.2,RPL13P6,RP11-736N17.8,LINC00677,RP11-736N17.4,RPL21P12,GCSHP2,LINC00605,AL161669.1,RP11-736N17.9,RPL21P13,RAP2CP1,RP11-45P15.2,RP11-45P15.4,SNORA28,HMGB3P26,RP11-600F24.1,RP11-600F24.2,RP11-600F24.7,RNU7-160P,RP11-894P9.2,RNU4-68P,AL139300.1,AMN,CDC42BPB,EXOC3L4,TNFAIP2,EIF5,MARK3,CKB,TRMT61A,BAG5,APOPT1 ENSG00000131323 chr14 103243813 103377837 1 ENSG00000246451 chr14 104148699 104150352 -1 - - -
Organoid_013 MantaDEL:165883:0:1:0:0:0 DEL chr16 66576450 66576451 + chr16 66578158 66578159 - 47 PASS 7 0 7 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaDEL:166417:0:1:0:0:0 DEL chr16 75442033 75442034 + chr16 75661319 75661320 - 64 PASS 9 0 6 0 - - - - 3' CFDP1 - - - - - - - - - - 13 SNORA76,RP11-77K12.3,RP11-77K12.4,RP11-77K12.5,RP11-77K12.8,RP11-77K12.1,TMEM170A,CHST6,RP11-77K12.7,CHST5,TMEM231,GABARAPL2,ADAT1 ENSG00000153774 chr16 75327596 75467383 -1 - NA - - - - - -
Organoid_013 MantaDEL:166638:0:1:0:0:0 DEL chr16 78678871 78678872 + chr16 78681168 78681169 - 63 PASS 9 0 7 0 - - WWOX WWOX 5' WWOX 3' WWOX INTERNL 0 EXONS DELETED - 9 INTERNL 0 EXONS DELETED - - 0 - ENSG00000186153 chr16 78133310 79246564 1 ENSG00000186153 chr16 78133310 79246564 1 - - -
Organoid_013 MantaDEL:176440:0:1:0:0:0 DEL chr18 50423036 50423037 + chr18 50439598 50439599 - 68 PASS 7 0 5 0 - - - - 5' DCC 3' DCC INTERNL 4 EXONS DELETED - 4 INTERNL 4 EXONS DELETED - - 0 - ENSG00000187323 chr18 49866542 51057784 1 ENSG00000187323 chr18 49866542 51057784 1 - - -
Organoid_013 MantaDEL:184951:0:1:0:0:0 DEL chr20 24222972 24222976 + chr20 24330537 24330541 - 44 PASS 5 0 6 0 - - - - - - - - - - - - - - - - 1 RP4-564O4.1 - NA - - - - NA - - - - - -
Organoid_013 MantaDEL:188090:0:1:0:0:0 DEL chr21 18109379 18109386 + chr21 18420620 18420627 - 99 PASS 13 0 9 0 - - - - - - - - - - - - - - - - 2 AP000473.6,AF212831.2 - NA - - - - NA - - - - - -
Organoid_013 MantaDEL:191658:0:1:0:0:0 DEL chr22 35333676 35333681 + chr22 35333729 35333730 - 41 PASS 0 0 11 0 - - - - 3' RP1-272J12.1 5' RP1-272J12.1 INTERNL 0 EXONS DELETED - - INTERNL 0 EXONS DELETED - 1 0 - ENSG00000227895 chr22 35318599 35468259 -1 ENSG00000227895 chr22 35318599 35468259 -1 - - -
Organoid_013 MantaDEL:194967:0:1:0:0:0 DEL chrX 55952060 55952061 + chrX 55954212 55954213 - 37 PASS 6 0 3 0 - - - - 5' RP13-188A5.1 3' RP13-188A5.1 INTERNL 0 EXONS DELETED - - INTERNL 0 EXONS DELETED - - 0 - ENSG00000227486 chrX 55934556 56041606 1 ENSG00000227486 chrX 55934556 56041606 1 - - -
Organoid_013 MantaDEL:195009:0:1:0:0:0 DEL chrX 58359681 58359682 + chrX 58420206 58420207 - 56 PASS 6 0 3 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaDEL:195232:0:1:0:0:0 DEL chrX 69462958 69462961 + chrX 69464141 69464144 - 93 PASS 7 0 16 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaDUP:TANDEM:0:5305:5306:0:0:0 DUP chr3 175513693 175513694 - chr3 175518168 175518169 + 40 PASS 3 0 5 0 - - NAALADL2 NAALADL2 3' NAALADL2 5' NAALADL2 INTERNL PROB INV OR TDUP - - INTERNL PROB INV OR TDUP - 11 0 - ENSG00000177694 chr3 174156363 175523428 1 ENSG00000177694 chr3 174156363 175523428 1 - - -
Organoid_013 MantaDUP:TANDEM:0:27377:27391:0:0:0 DUP chr17 57418383 57418384 - chr17 61897176 61897177 + 61 PASS 8 0 7 0 - - - - 3' YPEL2 3' FTSJ3 - - - - - - - - 0 - ENSG00000175155 chr17 57409050 57479090 1 ENSG00000108592 chr17 61896793 61907372 -1 - - -
Organoid_013 MantaDUP:TANDEM:0:35445:42686:0:0:0 DUP chr8 50275512 50276031 - chr8 50452420 50452851 + 64 PASS 9 0 0 0 - - - - - - 3' RP11-738G5.2 - - - - - - - - 0 - - NA - - - ENSG00000253206 chr8 50448945 50466973 -1 - - -
Organoid_013 MantaDUP:TANDEM:0:35445:43419:1:0:0 DUP chr8 15467760 15468223 - chr8 50452399 50452897 + 64 PASS 8 0 0 0 - - - - 3' TUSC3 3' RP11-738G5.2 - - - - - - - - 0 - ENSG00000104723 chr8 15274724 15624158 1 ENSG00000253206 chr8 50448945 50466973 -1 - - -
Organoid_013 MantaDUP:TANDEM:0:36098:40550:0:0:0 DUP chr8 65710907 65710908 - chr8 77860910 77860911 + 67 PASS 12 0 9 0 - - - - 5' CYP7B1 - - - - - - - - - - 0 - ENSG00000172817 chr8 65500320 65711318 -1 - NA - - - - - -
Organoid_013 MantaDUP:TANDEM:0:37119:44149:0:0:0 DUP chr8 36743683 36743684 - chr8 80173278 80173279 + 55 PASS 3 0 7 0 - - - - 3' KCNU1 - - - - - - - - - - 0 - ENSG00000215262 chr8 36641842 36793646 1 - NA - - - - - -
Organoid_013 MantaDUP:TANDEM:0:37712:42686:2:0:0 DUP chr8 40553158 40553620 - chr8 50275964 50276478 + 46 PASS 6 0 0 0 - - - - 5' ZMAT4 - - - - - 5 - - - - 0 - ENSG00000165061 chr8 40388109 40755352 -1 - NA - - - - - -
Organoid_013 MantaDUP:TANDEM:0:37712:43035:2:0:0 DUP chr8 36557733 36558228 - chr8 40553546 40554090 + 38 PASS 6 0 0 0 - - - - 5' RP11-962G15.1 3' ZMAT4 FUSION+ 5' of RP11-962G15.1 into 3' of ZMAT4 - 1 FUSION+ 5' of RP11-962G15.1 into 3' of ZMAT4 - - 0 - ENSG00000253363 chr8 36394909 36636682 -1 ENSG00000165061 chr8 40388109 40755352 -1 - - -
Organoid_013 MantaDUP:TANDEM:0:39893:42686:1:0:0 DUP chr8 32550091 32550517 - chr8 50275978 50276497 + 52 PASS 4 0 0 0 - - - - 3' NRG1 - - - - - - - - - - 0 - ENSG00000157168 chr8 31496902 32622548 1 - NA - - - - - -
Organoid_013 MantaDUP:TANDEM:0:42554:43382:0:0:0 DUP chr8 36532691 36532692 - chr8 77979607 77979608 + 100 PASS 8 0 24 0 - - - - 5' RP11-962G15.1 - - - - - 1 - - - - 0 - ENSG00000253363 chr8 36394909 36636682 -1 - NA - - - - - -
Organoid_013 MantaDUP:TANDEM:0:42572:42686:0:0:0 DUP chr8 50275592 50275981 - chr8 79996141 79996614 + 58 PASS 8 0 0 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaDUP:TANDEM:0:42686:44107:0:0:0 DUP chr8 50275434 50275982 - chr8 77685346 77685903 + 93 PASS 20 0 0 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaDUP:TANDEM:0:43035:43701:0:0:0 DUP chr8 32545480 32545983 - chr8 36558267 36558720 + 50 PASS 8 0 0 0 - - - - 3' NRG1 3' RP11-962G15.1 - - - - - - - - 0 - ENSG00000157168 chr8 31496902 32622548 1 ENSG00000253363 chr8 36394909 36636682 -1 - - -
Organoid_013 MantaDUP:TANDEM:10871:6:6:3:0:0 DUP chr6 143465726 143465727 - chr6 143466445 143466446 + 45 PASS 4 0 10 0 - - - - 3' AIG1 5' AIG1 INTERNL PROB INV OR TDUP - - INTERNL PROB INV OR TDUP - 1 0 - ENSG00000146416 chr6 143381633 143661441 1 ENSG00000146416 chr6 143381633 143661441 1 - - -
Organoid_013 MantaDUP:TANDEM:18251:0:1:0:0:0 DUP chr2 26705279 26705280 - chr2 27198273 27198274 + 66 PASS 7 0 10 0 - - - - 5' OTOF 5' MAPRE3 - - - - - - - - 0 - ENSG00000115155 chr2 26680071 26781566 -1 ENSG00000084764 chr2 27193480 27250064 1 - - -
Organoid_013 MantaDUP:TANDEM:18251:0:1:0:0:0 DUP chr2 26705279 26705280 - chr2 27198273 27198274 + 66 PASS 7 0 10 0 - - - - 5' OTOF 3' AC013472.4 FUSION+ 5' of OTOF into 3' of AC013472.4 - - FUSION+ 5' of OTOF into 3' of AC013472.4 - - 0 - ENSG00000115155 chr2 26680071 26781566 -1 ENSG00000230286 chr2 27173176 27232675 -1 - - -
Organoid_013 MantaDUP:TANDEM:21830:0:1:0:0:0 DUP chr2 78537843 78537846 - chr2 78543502 78543505 + 68 PASS 12 0 9 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaDUP:TANDEM:33219:0:1:0:0:0 DUP chr3 2641177 2641183 - chr3 2740013 2740019 + 74 PASS 7 0 11 0 - - - - 3' CNTN4 5' CNTN4 INTERNL PROB INV OR TDUP - - INTERNL PROB INV OR TDUP - 1 0 - ENSG00000144619 chr3 2140497 3099645 1 ENSG00000144619 chr3 2140497 3099645 1 - - -
Organoid_013 MantaDUP:TANDEM:37005:0:1:0:1:0 DUP chr3 60190536 60190540 - chr3 60195263 60195267 + 39 PASS 4 0 4 0 - - FHIT FHIT - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaDUP:TANDEM:37403:0:1:0:0:0 DUP chr3 65721339 65721342 - chr3 65732187 65732190 + 61 PASS 5 0 6 0 - - - - 5' MAGI1 3' MAGI1 INTERNL PROB INV OR TDUP - - INTERNL PROB INV OR TDUP - - 0 - ENSG00000151276 chr3 65339200 66024509 -1 ENSG00000151276 chr3 65339200 66024509 -1 - - -
Organoid_013 MantaDUP:TANDEM:45833:0:1:0:0:0 DUP chr3 192525138 192525141 - chr3 192575671 192575674 + 59 PASS 3 0 7 0 - - LPP LPP 5' MB21D2 3' MB21D2 INTERNL PROB INV OR TDUP - - INTERNL PROB INV OR TDUP - - 0 - ENSG00000180611 chr3 192514604 192635950 -1 ENSG00000180611 chr3 192514604 192635950 -1 - - -
Organoid_013 MantaDUP:TANDEM:50114:0:1:0:0:0 DUP chr4 54440872 54441370 - chr4 54476811 54477310 + 42 PASS 6 0 0 0 - - - - 3' FIP1L1 5' FIP1L1 INTERNL PROB INV OR TDUP - - INTERNL PROB INV OR TDUP - 13 0 - ENSG00000145216 chr4 54243810 55161439 1 ENSG00000145216 chr4 54243810 55161439 1 - - -
Organoid_013 MantaDUP:TANDEM:50114:0:1:0:0:0 DUP chr4 54440872 54441370 - chr4 54476811 54477310 + 42 PASS 6 0 0 0 - - - - 3' FIP1L1 3' LNX1 - - - - - - - - 0 - ENSG00000145216 chr4 54243810 55161439 1 ENSG00000072201 chr4 54325468 54567572 -1 - - -
Organoid_013 MantaDUP:TANDEM:50114:0:1:0:0:0 DUP chr4 54440872 54441370 - chr4 54476811 54477310 + 42 PASS 6 0 0 0 - - - - 5' LNX1 5' FIP1L1 - - - - - - - 13 0 - ENSG00000072201 chr4 54325468 54567572 -1 ENSG00000145216 chr4 54243810 55161439 1 - - -
Organoid_013 MantaDUP:TANDEM:50114:0:1:0:0:0 DUP chr4 54440872 54441370 - chr4 54476811 54477310 + 42 PASS 6 0 0 0 - - - - 5' LNX1 3' LNX1 INTERNL PROB INV OR TDUP - - INTERNL PROB INV OR TDUP - - 0 - ENSG00000072201 chr4 54325468 54567572 -1 ENSG00000072201 chr4 54325468 54567572 -1 - - -
Organoid_013 MantaDUP:TANDEM:50477:0:1:0:0:0 DUP chr4 59483296 59483300 - chr4 59893920 59893924 + 85 PASS 17 0 9 0 - - - - - - 5' RP11-340A13.2 - - - - - - - - 0 - - NA - - - ENSG00000251266 chr4 59850000 59912677 1 - - -
Organoid_013 MantaDUP:TANDEM:60948:1:2:0:0:0 DUP chr5 11129350 11129351 - chr5 11130652 11130653 + 33 PASS 3 0 2 0 - - - - 5' CTNND2 3' CTNND2 INTERNL PROB INV OR TDUP - 9 INTERNL PROB INV OR TDUP - - 0 - ENSG00000169862 chr5 10971952 11904155 -1 ENSG00000169862 chr5 10971952 11904155 -1 - - -
Organoid_013 MantaDUP:TANDEM:68519:0:1:0:0:0 DUP chr5 126466695 126466698 - chr5 126640432 126640435 + 61 PASS 8 0 5 0 - - - - - - 5' MEGF10 - - - - - - - - 0 - - NA - - - ENSG00000145794 chr5 126626523 126801429 1 - - -
Organoid_013 MantaDUP:TANDEM:68622:0:1:0:0:0 DUP chr5 128548233 128548234 - chr5 129006577 129006578 + 84 PASS 11 0 10 0 - - - - - - 5' ADAMTS19 - - - - - - - 2 0 - - NA - - - ENSG00000145808 chr5 128795958 129074376 1 - - -
Organoid_013 MantaDUP:TANDEM:68622:0:1:0:0:0 DUP chr5 128548233 128548234 - chr5 129006577 129006578 + 84 PASS 11 0 10 0 - - - - - - 3' CTC-575N7.1 - - - - - - - - 0 - - NA - - - ENSG00000251680 chr5 128836054 129241610 -1 - - -
Organoid_013 MantaDUP:TANDEM:82552:0:1:0:0:0 DUP chr6 148955113 148955118 - chr6 148955186 148955191 + 71 PASS 0 0 17 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaDUP:TANDEM:92657:0:1:0:0:0 DUP chr7 111159546 111159549 - chr7 111165560 111165563 + 102 PASS 25 0 19 0 - - IMMP2L IMMP2L 5' IMMP2L 3' IMMP2L INTERNL PROB INV OR TDUP - - INTERNL PROB INV OR TDUP - - 0 - ENSG00000184903 chr7 110303110 111202573 -1 ENSG00000184903 chr7 110303110 111202573 -1 - - -
Organoid_013 MantaDUP:TANDEM:94808:0:3:0:0:0 DUP chr7 139793984 139793985 - chr7 140024547 140024548 + 77 PASS 8 0 13 0 - - - - 5' KDM7A 3' SLC37A3 FUSION+ 5' of KDM7A into 3' of SLC37A3 - 1 FUSION+ 5' of KDM7A into 3' of SLC37A3 - - 0 - ENSG00000006459 chr7 139784546 139876835 -1 ENSG00000157800 chr7 139993493 140104233 -1 - - -
Organoid_013 MantaDUP:TANDEM:94808:2:5:0:0:0 DUP chr7 139863756 139863757 - chr7 140038365 140038366 + 52 PASS 7 0 9 0 - - - - 5' KDM7A 3' SLC37A3 FUSION+ 5' of KDM7A into 3' of SLC37A3 - - FUSION+ 5' of KDM7A into 3' of SLC37A3 - - 0 - ENSG00000006459 chr7 139784546 139876835 -1 ENSG00000157800 chr7 139993493 140104233 -1 - - -
Organoid_013 MantaDUP:TANDEM:96701:0:1:0:0:0 DUP chr8 3231507 3231513 - chr8 16717038 16717044 + 31 PASS 8 0 10 1 - - - - 5' CSMD1 3' RP11-13N12.1 FUSION+ 5' of CSMD1 into 3' of RP11-13N12.1 - 4 FUSION+ 5' of CSMD1 into 3' of RP11-13N12.1 - - 0 - ENSG00000183117 chr8 2792875 4852494 -1 ENSG00000253496 chr8 16534414 16772553 -1 - - -
Organoid_013 MantaDUP:TANDEM:96701:0:1:0:0:0 DUP chr8 3231507 3231513 - chr8 16717038 16717044 + 31 PASS 8 0 10 1 - - - - 5' RP11-279L11.1 3' RP11-13N12.1 FUSION+ 5' of RP11-279L11.1 into 3' of RP11-13N12.1 - - FUSION+ 5' of RP11-279L11.1 into 3' of RP11-13N12.1 - - 0 - ENSG00000253162 chr8 3230875 3232748 -1 ENSG00000253496 chr8 16534414 16772553 -1 - - -
Organoid_013 MantaDUP:TANDEM:96701:1:2:0:0:0 DUP chr8 16716813 16716816 - chr8 35511360 35511363 + 80 PASS 14 0 8 0 - - - - 5' RP11-13N12.1 5' UNC5D - - - - - - - - 0 - ENSG00000253496 chr8 16534414 16772553 -1 ENSG00000156687 chr8 35092975 35654068 1 - - -
Organoid_013 MantaDUP:TANDEM:96701:2:3:0:0:0 DUP chr8 35511050 35511051 - chr8 77938282 77938283 + 54 PASS 4 0 7 0 - - - - 3' UNC5D - - - - - - - - - - 0 - ENSG00000156687 chr8 35092975 35654068 1 - NA - - - - - -
Organoid_013 MantaDUP:TANDEM:96977:0:1:0:0:0 DUP chr8 5677640 5677643 - chr8 5684321 5684324 + 99 PASS 23 0 17 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaDUP:TANDEM:103277:0:1:0:0:0 DUP chr8 103712543 103712544 - chr8 103905573 103905574 + 48 PASS 4 0 4 0 - - - - - - 5' KB-1507C5.2 - - - - - - - 5 0 - - NA - - - ENSG00000253320 chr8 103876528 103990104 1 - - -
Organoid_013 MantaDUP:TANDEM:103277:0:1:0:0:0 DUP chr8 103712543 103712544 - chr8 103905573 103905574 + 48 PASS 4 0 4 0 - - - - - - 3' AZIN1 - - - - - - - - 0 - - NA - - - ENSG00000155096 chr8 103838585 103906092 -1 - - -
Organoid_013 MantaDUP:TANDEM:103277:0:1:0:0:0 DUP chr8 103712543 103712544 - chr8 103905573 103905574 + 48 PASS 4 0 4 0 - - - - - - 5' KB-1507C5.3 - - - - - - - - 0 - - NA - - - ENSG00000253263 chr8 103904104 103905836 1 - - -
Organoid_013 MantaDUP:TANDEM:113039:0:1:0:0:0 DUP chr9 123729169 123729176 - chr9 124117220 124117227 + 51 PASS 5 0 5 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaDUP:TANDEM:118287:0:1:0:0:0 DUP chr10 56891960 56891963 - chr10 57276927 57276930 + 83 PASS 12 0 9 0 - - - - 5' PCDH15 3' PCDH15 INTERNL PROB INV OR TDUP - - INTERNL PROB INV OR TDUP - - 0 - ENSG00000150275 chr10 55562531 57387702 -1 ENSG00000150275 chr10 55562531 57387702 -1 - - -
Organoid_013 MantaDUP:TANDEM:118287:0:1:0:0:0 DUP chr10 56891960 56891963 - chr10 57276927 57276930 + 83 PASS 12 0 9 0 - - - - 5' PCDH15 3' RP11-168O22.1 FUSION+ 5' of PCDH15 into 3' of RP11-168O22.1 - - FUSION+ 5' of PCDH15 into 3' of RP11-168O22.1 - - 0 - ENSG00000150275 chr10 55562531 57387702 -1 ENSG00000236744 chr10 57007515 57356993 -1 - - -
Organoid_013 MantaDUP:TANDEM:118535:0:1:0:0:0 DUP chr10 60321710 60322140 - chr10 60466032 60466573 + 60 PASS 9 0 0 0 - - - - 3' BICC1 5' BICC1 INTERNL PROB INV OR TDUP - - INTERNL PROB INV OR TDUP - 1 0 - ENSG00000122870 chr10 60272900 60591195 1 ENSG00000122870 chr10 60272900 60591195 1 - - -
Organoid_013 MantaDUP:TANDEM:134610:0:1:0:0:0 DUP chr12 23242065 23242066 - chr12 23665043 23665044 + 49 PASS 23 0 25 0 - - SOX5 SOX5 3' RP11-114G22.1 - - - - - - - - - - 0 - ENSG00000256995 chr12 22852793 23327057 1 - NA - - - - - -
Organoid_013 MantaDUP:TANDEM:134892:0:1:0:0:0 DUP chr12 24854288 24854291 - chr12 25479291 25479294 + 195 PASS 399 0 336 0 - - SOX5 SOX5 - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaDUP:TANDEM:141583:0:1:0:0:0 DUP chr12 119996500 119996505 - chr12 120231180 120231185 + 78 PASS 14 0 11 0 - - - - 5' RP11-768F21.1 3' CIT FUSION+ 5' of RP11-768F21.1 into 3' of CIT - - FUSION+ 5' of RP11-768F21.1 into 3' of CIT - - 0 - ENSG00000248636 chr12 119825792 120105884 -1 ENSG00000122966 chr12 120123595 120315095 -1 - - -
Organoid_013 MantaDUP:TANDEM:151682:0:1:0:0:0 DUP chr14 41296724 41296727 - chr14 41296872 41296875 + 37 PASS 0 0 8 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaDUP:TANDEM:155026:1:2:0:0:0 DUP chr14 89234522 89234526 - chr14 89235610 89235614 + 75 PASS 13 0 10 0 - - - - 5' EML5 3' EML5 INTERNL PROB INV OR TDUP - - INTERNL PROB INV OR TDUP - - 0 - ENSG00000165521 chr14 89078775 89259096 -1 ENSG00000165521 chr14 89078775 89259096 -1 - - -
Organoid_013 MantaDUP:TANDEM:156255:0:1:0:0:0 DUP chr14 105192451 105192452 - chr14 105744945 105744946 + 45 PASS 5 0 3 0 - - - - 3' ADSSL1 - - - - - - - - - - 0 - ENSG00000185100 chr14 105190523 105213662 1 - NA - - - - - -
Organoid_013 MantaDUP:TANDEM:159563:0:1:0:1:0 DUP chr15 66001053 66001054 - chr15 66001144 66001145 + 32 PASS 0 0 6 0 - - - - 5' DENND4A 3' DENND4A INTERNL PROB INV OR TDUP - 1 INTERNL PROB INV OR TDUP - - 0 - ENSG00000174485 chr15 65950384 66084631 -1 ENSG00000174485 chr15 65950384 66084631 -1 - - -
Organoid_013 MantaDUP:TANDEM:173057:0:1:0:0:0 DUP chr17 78114761 78114783 - chr17 78122837 78122859 + 78 PASS 18 0 8 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaDUP:TANDEM:184003:0:1:0:0:0 DUP chr20 11183640 11183643 - chr20 11262761 11262764 + 51 PASS 6 0 4 0 - - MACROD2 MACROD2 - - 3' RP4-734C18.1 - - - - - - - - 0 - - NA - - - ENSG00000230990 chr20 11214818 11282173 -1 - - -
Organoid_013 MantaDUP:TANDEM:184802:0:1:0:0:0 DUP chr20 21450970 21450974 - chr20 21912801 21912805 + 45 PASS 3 0 4 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaDUP:TANDEM:191052:0:1:0:0:0 DUP chr22 25905338 25905340 - chr22 25905440 25905442 + 38 PASS 0 0 7 0 - - - - 3' CRYBB2P1 5' CRYBB2P1 INTERNL PROB INV OR TDUP - - INTERNL PROB INV OR TDUP - 3 0 - ENSG00000100058 chr22 25844072 25916821 1 ENSG00000100058 chr22 25844072 25916821 1 - - -
Organoid_013 MantaINS:0:1725:1725:0:3:0 INS chr1 191512617 191512618 + chr1 191512632 191512633 - 35 PASS 3 0 3 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
Organoid_013 MantaINS:0:18756:18756:0:2:0 INS chr5 166073397 166073411 + chr5 166073397 166073411 - 90 PASS 0 0 22 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
"))
Patient_036 = as.data.frame(read.table(text = " Driver SNV_Organoid_036 INDEL_Organoid_036 Deletion_Organoid_036
ABCB1 * - * -
ACVR1B * * * -
ACVR2A * * - -
APC * - * -
ARID1A * - * -
ARID1B * * - -
ARID2 * * - -
AXIN1 * - - -
B2M * - - -
BRAF * * - -
C3orf62 * - * -
CCDC102B * * * *
CCND1 * - - -
CCND3 * * * -
CCNE1 * - - -
CD1A * * - -
CDH1 * - * -
CDK6 * * - -
CDKN1B * * - -
CDKN2A * - - -
CHD4 * - - -
CHL1 * * - -
COIL * - - -
CRISPLD1 * - - -
CTNNB1 * - - -
DNAH7 * * * -
EGFR * * - -
ELF3 * - - -
EPHA2 * - - -
EPHA3 * * * -
ERBB2 * - - -
FAM196B * - - -
FBXW7 * * - -
GATA4 * * - -
GATA6 * * - *
GATAD1 * - - -
GPATCH8 * - - -
HIST1H3B * - - -
JAK1 * - - -
KCNQ3 * * - -
KDM6A * - * -
KRAS * - - -
LIN7A * * * -
LRRK2 * * - -
MAP2K7 * - - -
MAP3K1 * - - -
MBD6 * - - -
MDM2 * - - -
MET * - - -
MSH3 * * * -
MUC6 * * - -
MYC * - - -
NAV3 * * * -
NIPBL * - * -
NOTCH1 * * - -
PBRM1 * - - -
PCDH17 * * * -
PIK3CA * - - -
PIK3R1 * - - -
POLQ * * - -
PPM1D * - - -
PTEN * - - -
RASA1 * * - -
RNF43 * - - -
RPL22 * - - -
SCN3A * * - -
SIN3A * - - -
SLIT2 * * * -
SMAD4 * * * *
SMARCA4 * - - -
STK11 * * - -
TGFBR2 * - - -
TP53 * - - -
TRPA1 * - - *
TSHZ3 * * - -
ZFHX3 * * * -
"))
annotated_snv_indel=as.data.frame(read.delim(text = " SYMBOL Location Allele Consequence IMPACT Gene Feature_type Feature BIOTYPE EXON INTRON HGVSc HGVSp cDNA_position CDS_position Protein_position Amino_acids Codons Existing_variation DISTANCE STRAND FLAGS SYMBOL_SOURCE HGNC_ID TSL APPRIS SIFT PolyPhen AF FREQS CLIN_SIG SOMATIC PHENO PUBMED MOTIF_NAME MOTIF_POS HIGH_INF_POS MOTIF_SCORE_CHANGE
CICP27 1:139022-139022 G downstream_gene_variant MODIFIER ENSG00000233750 Transcript ENST00000442987 processed_pseudogene - - - - - - - - - - 4186 1 - HGNC HGNC:48835 - - - - - - - - - - - - - -
AL627309.5 1:139022-139022 G downstream_gene_variant MODIFIER ENSG00000241860 Transcript ENST00000484859 antisense - - - - - - - - - - 2452 -1 - Clone_based_ensembl_gene - 5 - - - - - - - - - - - - -
AL627309.5 1:139022-139022 G downstream_gene_variant MODIFIER ENSG00000241860 Transcript ENST00000490997 antisense - - - - - - - - - - 3786 -1 - Clone_based_ensembl_gene - 5 - - - - - - - - - - - - -
AL627309.2 1:139022-139022 G downstream_gene_variant MODIFIER ENSG00000239906 Transcript ENST00000493797 antisense - - - - - - - - - - 768 -1 - Clone_based_ensembl_gene - 2 - - - - - - - - - - - - -
AL627309.6 1:139022-139022 G upstream_gene_variant MODIFIER ENSG00000268903 Transcript ENST00000494149 processed_pseudogene - - - - - - - - - - 3127 -1 - Clone_based_ensembl_gene - - - - - - - - - - - - - - -
AL627309.7 1:139022-139022 G upstream_gene_variant MODIFIER ENSG00000269981 Transcript ENST00000595919 processed_pseudogene - - - - - - - - - - 1057 -1 - Clone_based_ensembl_gene - - - - - - - - - - - - - - -
RNU6-1199P 1:761964-761964 G upstream_gene_variant MODIFIER ENSG00000223181 Transcript ENST00000411249 snRNA - - - - - - - - - - 3628 -1 - HGNC HGNC:48162 - - - - - - - - - - - - - -
AL669831.2 1:761964-761964 G non_coding_transcript_exon_variant MODIFIER ENSG00000229905 Transcript ENST00000422528 antisense 2-Feb - - - 431 - - - - - - 1 - Clone_based_ensembl_gene - 5 - - - - - - - - - - - - -
AL669831.1 1:761964-761964 G downstream_gene_variant MODIFIER ENSG00000228327 Transcript ENST00000428504 transcribed_unprocessed_pseudogene - - - - - - - - - - 2759 -1 - Clone_based_ensembl_gene - - - - - - - - - - - - - - -
AL669831.1 1:761964-761964 G intron_variant,non_coding_transcript_variant MODIFIER ENSG00000228327 Transcript ENST00000506640 processed_transcript - 15-Jul - - - - - - - - - -1 - Clone_based_ensembl_gene - 5 - - - - - - - - - - - - -
AL669831.3 1:761964-761964 G intron_variant,non_coding_transcript_variant MODIFIER ENSG00000230021 Transcript ENST00000634337 processed_transcript - 4-Jan - - - - - - - - - -1 - Clone_based_ensembl_gene - 5 - - - - - - - - - - - - -
AL669831.3 1:761964-761964 G intron_variant,non_coding_transcript_variant MODIFIER ENSG00000230021 Transcript ENST00000635509 processed_transcript - 3-Jan - - - - - - - - - -1 - Clone_based_ensembl_gene - 5 - - - - - - - - - - - - -
NOC2L 1:959795-959795 C upstream_gene_variant MODIFIER ENSG00000188976 Transcript ENST00000327044 protein_coding - - - - - - - - - - 505 -1 - HGNC HGNC:24517 1 P1 - - - - - - - - - - - -"))
structural_variants = as.data.frame(read.delim(text = " ID Type Chrom1 Start1 End1 Strand1 Chrom2 Start2 End2 Strand2 Score Filters Read.pairs...tumour Read.pairs...normal Split.reads...tumour Split.reads...normal MobileElement.node1 MobileElement.node2 FragileSite.node1 FragileSite.node2 endRetained.node1 GeneName.node1 endRetained.node2 GeneName.node2 FusionPrediction.node1 Details.node1 Runthrough.node1 TranscriptsRetained.node1 FusionPrediction.node2 Details.node2 Runthrough.node2 TranscriptsRetained.node2 Num.genes.deleted Genes.deleted EnsemblGeneID.node1 gene.chr.node1 gene.start.node1 gene.end.node1 GeneStrand.node1 EnsemblGeneID.node2 gene.chr.node2 gene.start.node2 gene.end.node2 GeneStrand.node2 Runthrough.node2.chr Runthrough.node2.start Runthrough.node2.end
MantaBND:0:3118:3200:0:1:0:0_MantaBND:0:3118:3200:0:1:0:1 BND chr1 199442012 199442014 - chrX 11732574 11732576 - 61 PASS 4 0 11 0 - - - NLGN4X - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
MantaBND:0:3118:3200:1:0:0:1_MantaBND:0:3118:3200:1:0:0:0 BND chr1 199441886 199442233 + chrX 11732675 11733035 + 61 PASS 2 0 0 0 - - - NLGN4X - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
MantaBND:0:3118:3269:0:1:0:1_MantaBND:0:3118:3269:0:1:0:0 BND chr2 19112564 19112565 - chrX 11732202 11732203 - 137 PASS 13 0 15 0 - - None NLGN4X - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
MantaBND:0:3118:3269:1:0:0:0_MantaBND:0:3118:3269:1:0:0:1 BND chr2 19112142 19112924 + chrX 11732449 11733053 + 137 PASS 11 0 0 0 - - None NLGN4X - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
MantaBND:0:3118:3361:0:0:0:1_MantaBND:0:3118:3361:0:0:0:0 BND chr2 118157987 118158635 - chrX 11730965 11731386 - 58 PASS 7 0 0 0 - - - NLGN4X - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
MantaBND:0:3118:3361:1:0:0:0_MantaBND:0:3118:3361:1:0:0:1 BND chr2 118158091 118158774 + chrX 11731450 11731881 + 58 PASS 7 0 0 0 - - - NLGN4X - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
MantaBND:0:3118:5313:0:0:0:0_MantaBND:0:3118:5313:0:0:0:1 BND chr4 11983688 11984398 + chrX 11731436 11731833 + 39 PASS 6 0 0 0 - - - NLGN4X - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
MantaBND:0:3118:7125:0:0:0:0_MantaBND:0:3118:7125:0:0:0:1 BND chr5 87660469 87661077 - chrX 11732543 11733072 + 183 PASS 26 0 0 0 - - - NLGN4X 3' TMEM161B-AS1 - - - - - - - - - - 0 - ENSG00000247828 chr5 87564712 87732502 1 - NA - - - - - -
MantaBND:0:3118:7125:1:0:0:1_MantaBND:0:3118:7125:1:0:0:0 BND chr5 87660867 87660868 + chrX 11732462 11732463 - 183 PASS 11 0 25 0 - - - NLGN4X 5' TMEM161B-AS1 - - - - - 7 - - - - 0 - ENSG00000247828 chr5 87564712 87732502 1 - NA - - - - - -
MantaBND:0:3118:7956:0:0:0:1_MantaBND:0:3118:7956:0:0:0:0 BND chr6 22858597 22858599 + chrX 11731342 11731344 - 47 PASS 3 0 5 0 - - - NLGN4X 3' RP1-209A6.1 - - - - - - - - - - 0 - ENSG00000233358 chr6 22744624 23032009 -1 - NA - - - - - -
MantaBND:0:3118:8426:0:0:0:1_MantaBND:0:3118:8426:0:0:0:0 BND chr6 73060810 73060812 - chrX 11731332 11731334 - 105 PASS 7 0 16 0 - - - NLGN4X 3' RIMS1 - - - - - - - - - - 0 - ENSG00000079841 chr6 72596406 73112845 1 - NA - - - - - -
MantaBND:0:3118:8426:1:0:0:0_MantaBND:0:3118:8426:1:0:0:1 BND chr6 73060521 73061064 + chrX 11731418 11731821 + 105 PASS 5 0 0 0 - - - NLGN4X 5' RIMS1 - - - - - 2 - - - - 0 - ENSG00000079841 chr6 72596406 73112845 1 - NA - - - - - -
MantaBND:0:3118:9134:0:0:0:0_MantaBND:0:3118:9134:0:0:0:1 BND chr6 162096134 162096136 + chrX 11731295 11731297 - 60 PASS 4 0 5 0 - - PARK2 NLGN4X 3' PARK2 - - - - - - - - - - 0 - ENSG00000185345 chr6 161768452 163148803 -1 - NA - - - - - -
MantaBND:0:3118:12823:0:0:0:1_MantaBND:0:3118:12823:0:0:0:0 BND chr8 130675364 130675368 + chrX 11732211 11732215 - 229 PASS 21 0 16 0 - - - NLGN4X 3' CCDC26 - - - - - - - - - - 0 - ENSG00000229140 chr8 130363937 130692485 -1 - NA - - - - - -
MantaBND:0:3118:12823:1:0:0:1_MantaBND:0:3118:12823:1:0:0:0 BND chr8 130674969 130675673 - chrX 11732327 11733103 + 229 PASS 21 0 0 0 - - - NLGN4X 5' CCDC26 - - - - - - - - - - 0 - ENSG00000229140 chr8 130363937 130692485 -1 - NA - - - - - -
MantaBND:0:3118:15977:0:0:0:1_MantaBND:0:3118:15977:0:0:0:0 BND chr10 110442569 110443125 + chrX 11731429 11731835 + 42 PASS 6 0 0 0 - - - NLGN4X - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
MantaBND:0:3118:17186:0:0:0:0_MantaBND:0:3118:17186:0:0:0:1 BND chr11 55818425 55819007 - chrX 11731437 11731774 + 60 PASS 3 0 0 0 - - - NLGN4X - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
MantaBND:0:3118:17186:1:3:0:1_MantaBND:0:3118:17186:1:3:0:0 BND chr11 55818737 55818739 + chrX 11731349 11731351 - 60 PASS 3 0 8 0 - - - NLGN4X - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
MantaBND:0:3118:17903:0:0:0:1_MantaBND:0:3118:17903:0:0:0:0 BND chr11 100910619 100911064 + chrX 11731437 11731833 + 74 PASS 8 0 0 0 - - - NLGN4X - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
MantaBND:0:3118:17903:1:0:0:0_MantaBND:0:3118:17903:1:0:0:1 BND chr11 100910823 100910824 - chrX 11731042 11731043 - 74 PASS 2 0 7 0 - - - NLGN4X - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
MantaBND:0:3118:18144:0:0:0:0_MantaBND:0:3118:18144:0:0:0:1 BND chr11 122215524 122215975 - chrX 11731416 11731828 + 59 PASS 8 0 0 0 - - - NLGN4X 5' RP11-820L6.1 - - - - - - - - - - 0 - ENSG00000255090 chr11 122026130 122293579 -1 - NA - - - - - -
MantaBND:0:3118:25834:0:0:0:0_MantaBND:0:3118:25834:0:0:0:1 BND chr18 23363893 23363894 - chrX 11732371 11732372 - 224 PASS 24 0 19 0 - - - NLGN4X - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
MantaBND:0:3118:25834:1:0:0:0_MantaBND:0:3118:25834:1:0:0:1 BND chr18 23363894 23363895 + chrX 11732696 11732697 + 224 PASS 28 0 18 0 - - - NLGN4X - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
MantaBND:0:3118:26113:0:0:0:0_MantaBND:0:3118:26113:0:0:0:1 BND chr18 65699472 65699474 - chrX 11732499 11732501 - 116 PASS 12 0 14 0 - - - NLGN4X - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
MantaBND:0:3118:26113:1:0:0:0_MantaBND:0:3118:26113:1:0:0:1 BND chr18 65699104 65699813 + chrX 11732592 11733061 + 116 PASS 6 0 0 0 - - - NLGN4X - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
MantaBND:0:3118:26333:0:0:0:0_MantaBND:0:3118:26333:0:0:0:1 BND chr18 69541638 69542156 - chrX 11731436 11731813 + 54 PASS 6 0 0 0 - - - NLGN4X - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
MantaBND:0:3118:29139:0:0:0:0_MantaBND:0:3118:29139:0:0:0:1 BND chr20 53028991 53029689 + chrX 11731436 11731840 + 52 PASS 6 0 0 0 - - - NLGN4X - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
MantaBND:0:3118:29139:1:0:0:0_MantaBND:0:3118:29139:1:0:0:1 BND chr20 53029112 53029681 - chrX 11730975 11731386 - 52 PASS 3 0 0 0 - - - NLGN4X - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
MantaBND:0:3153:3154:0:0:0:0_MantaBND:0:3153:3154:0:0:0:1 BND chr1 105793313 105793957 - chr22 29065639 29066276 + 71 PASS 18 0 0 0 - - - - - - 3' TTC28 - - - - - - - - 0 - - NA - - - ENSG00000100154 chr22 28374004 29075853 -1 - - -
MantaBND:0:3154:3173:0:5:0:0_MantaBND:0:3154:3173:0:5:0:1 BND chr1 119341535 119341537 - chr22 29065768 29065770 - 37 PASS 3 0 7 0 - - - - - - 5' TTC28 - - - - - - - - 0 - - NA - - - ENSG00000100154 chr22 28374004 29075853 -1 - - -
MantaBND:0:3154:3308:0:2:0:1_MantaBND:0:3154:3308:0:2:0:0 BND chr2 80938111 80938112 + chr22 29065362 29065363 + 31 PASS 5 0 4 0 - - - - 3' AC084193.1 3' TTC28 - - - - - - - - 0 - ENSG00000230975 chr2 80926513 81097315 -1 ENSG00000100154 chr22 28374004 29075853 -1 - - -
MantaBND:0:3154:4045:0:2:0:0_MantaBND:0:3154:4045:0:2:0:1 BND chr3 18979850 18979853 - chr22 29065741 29065744 - 71 PASS 5 0 15 0 - - - - - - 5' TTC28 - - - - - - - - 0 - - NA - - - ENSG00000100154 chr22 28374004 29075853 -1 - - -
MantaBND:0:3154:4045:1:0:0:1_MantaBND:0:3154:4045:1:0:0:0 BND chr3 18979599 18980179 + chr22 29065821 29066305 + 71 PASS 9 0 0 0 - - - - - - 3' TTC28 - - - - - - - - 0 - - NA - - - ENSG00000100154 chr22 28374004 29075853 -1 - - -
MantaBND:0:3154:4420:1:0:0:1_MantaBND:0:3154:4420:1:0:0:0 BND chr3 80284203 80284638 - chr22 29065817 29066228 - 53 PASS 3 0 0 0 - - - - - - 5' TTC28 - - - - - - - - 0 - - NA - - - ENSG00000100154 chr22 28374004 29075853 -1 - - -
MantaBND:0:3154:4420:2:0:0:0_MantaBND:0:3154:4420:2:0:0:1 BND chr3 80284369 80284907 + chr22 29066331 29066713 + 53 PASS 4 0 0 0 - - - - - - 3' TTC28 - - - - - - - - 0 - - NA - - - ENSG00000100154 chr22 28374004 29075853 -1 - - -
MantaBND:0:3154:4910:0:0:0:0_MantaBND:0:3154:4910:0:0:0:1 BND chr3 177581726 177582392 - chr22 29065754 29066512 + 105 PASS 33 1 0 0 - - - - 3' RP11-91K9.1 3' TTC28 - - - - - - - - 0 - ENSG00000231574 chr3 177534653 177617012 1 ENSG00000100154 chr22 28374004 29075853 -1 - - -
MantaBND:0:3154:5514:0:0:0:1_MantaBND:0:3154:5514:0:0:0:0 BND chr4 44027682 44028542 - chr22 29064974 29065650 - 68 PASS 37 1 0 0 - - - - - - 5' TTC28 - - - - - - - - 0 - - NA - - - ENSG00000100154 chr22 28374004 29075853 -1 - - -
MantaBND:0:3154:5514:1:0:0:0_MantaBND:0:3154:5514:1:0:0:1 BND chr4 44027793 44028441 + chr22 29065780 29066194 + 68 PASS 4 0 0 0 - - - - - - 3' TTC28 - - - - - - - - 0 - - NA - - - ENSG00000100154 chr22 28374004 29075853 -1 - - -
MantaBND:0:3154:6033:0:1:0:0_MantaBND:0:3154:6033:0:1:0:1 BND chr4 121067660 121067661 + chr22 29065209 29065210 - 44 PASS 4 0 6 0 - - - - 5' RP11-679C8.2 5' TTC28 - - - 1 - - - - 0 - ENSG00000250938 chr4 120988113 121337921 1 ENSG00000100154 chr22 28374004 29075853 -1 - - -
MantaBND:0:3154:7694:0:0:0:1_MantaBND:0:3154:7694:0:0:0:0 BND chr5 173802999 173803002 - chr22 29065343 29065346 + 68 PASS 10 0 21 0 - - - - 3' RP11-267A15.1 3' TTC28 - - - - - - - - 0 - ENSG00000249306 chr5 173763298 173959460 1 ENSG00000100154 chr22 28374004 29075853 -1 - - -
MantaBND:0:3154:7694:2:0:0:1_MantaBND:0:3154:7694:2:0:0:0 BND chr5 173803014 173803015 + chr22 29066120 29066121 + 178 PASS 33 0 8 0 - - - - 5' RP11-267A15.1 3' TTC28 FUSION+ 5' of RP11-267A15.1 into 3' of TTC28 - - FUSION+ 5' of RP11-267A15.1 into 3' of TTC28 - - 0 - ENSG00000249306 chr5 173763298 173959460 1 ENSG00000100154 chr22 28374004 29075853 -1 - - -
MantaBND:0:3154:12730:0:3:0:1_MantaBND:0:3154:12730:0:3:0:0 BND chr8 115437156 115437157 + chr22 29065547 29065548 - 74 PASS 15 0 7 0 - - - - - - 5' TTC28 - - - - - - - - 0 - - NA - - - ENSG00000100154 chr22 28374004 29075853 -1 - - -
MantaBND:0:3154:12730:1:0:0:1_MantaBND:0:3154:12730:1:0:0:0 BND chr8 115436755 115437372 - chr22 29065797 29066466 + 74 PASS 13 0 0 0 - - - - - - 3' TTC28 - - - - - - - - 0 - - NA - - - ENSG00000100154 chr22 28374004 29075853 -1 - - -
MantaBND:0:3154:19507:0:0:0:0_MantaBND:0:3154:19507:0:0:0:1 BND chr12 107518781 107519418 + chr22 29065938 29066512 + 74 PASS 14 0 0 0 - - - - - - 3' TTC28 - - - - - - - - 0 - - NA - - - ENSG00000100154 chr22 28374004 29075853 -1 - - -
MantaBND:0:3154:19507:2:0:0:0_MantaBND:0:3154:19507:2:0:0:1 BND chr12 107519028 107519031 - chr22 29065808 29065811 + 55 PASS 14 0 11 0 - - - - - - 3' TTC28 - - - - - - - - 0 - - NA - - - ENSG00000100154 chr22 28374004 29075853 -1 - - -
MantaBND:0:3154:23537:0:0:0:0_MantaBND:0:3154:23537:0:0:0:1 BND chr16 51853904 51853905 - chr22 29066120 29066121 + 150 PASS 20 0 9 0 - - - - - - 3' TTC28 - - - - - - - - 0 - - NA - - - ENSG00000100154 chr22 28374004 29075853 -1 - - -
MantaBND:0:3154:23537:1:0:0:0_MantaBND:0:3154:23537:1:0:0:1 BND chr16 51853900 51853902 + chr22 29065849 29065851 - 150 PASS 21 0 17 0 - - - - - - 5' TTC28 - - - - - - - - 0 - - NA - - - ENSG00000100154 chr22 28374004 29075853 -1 - - -
MantaBND:0:3154:30056:0:0:0:0_MantaBND:0:3154:30056:0:0:0:1 BND chr22 29065495 29065499 - chrX 116002357 116002361 + 113 PASS 29 0 14 0 - - - - 5' TTC28 - - - - - - - - - - 0 - ENSG00000100154 chr22 28374004 29075853 -1 - NA - - - - - -
MantaBND:0:3154:30056:1:3:0:1_MantaBND:0:3154:30056:1:3:0:0 BND chr22 29066120 29066121 + chrX 116002344 116002345 - 113 PASS 26 0 10 0 - - - - 3' TTC28 - - - - - - - - - - 0 - ENSG00000100154 chr22 28374004 29075853 -1 - NA - - - - - -
MantaBND:0:3198:3199:0:0:0:0_MantaBND:0:3198:3199:0:0:0:1 BND chr1 197317522 197317524 - chr9 115556386 115556388 + 55 PASS 0 0 10 0 - - - PALM2-AKAP2 - - 5' SNX30 - - - - - - - - 0 - - NA - - - ENSG00000148158 chr9 115513118 115643951 1 - - -
MantaBND:0:3228:3229:0:1:0:1_MantaBND:0:3228:3229:0:1:0:0 BND chr1 242753577 242753579 + chr14 31150770 31150772 + 46 PASS 3 0 7 0 - - - - - - 5' SCFD1 - - - - - - - 9 0 - - NA - - - ENSG00000092108 chr14 31091318 31205018 1 - - -
MantaBND:0:3229:3230:0:1:0:0_MantaBND:0:3229:3230:0:1:0:1 BND chr1 187348674 187348675 - chr14 31150793 31150794 + 99 PASS 9 0 6 0 - - - - - - 5' SCFD1 - - - - - - - 9 0 - - NA - - - ENSG00000092108 chr14 31091318 31205018 1 - - -
MantaBND:0:3229:3230:1:0:0:1_MantaBND:0:3229:3230:1:0:0:0 BND chr1 187348483 187349036 + chr14 31150190 31150628 - 99 PASS 10 0 0 0 - - - - - - 3' SCFD1 - - - - - - - - 0 - - NA - - - ENSG00000092108 chr14 31091318 31205018 1 - - -
MantaBND:0:3229:4813:0:0:0:1_MantaBND:0:3229:4813:0:0:0:0 BND chr3 173509870 173510241 - chr14 31150188 31150530 - 50 PASS 2 0 0 0 - - NAALADL2 - 3' NLGN1 3' SCFD1 - - - - - - - - 0 - ENSG00000169760 chr3 173114074 174004434 1 ENSG00000092108 chr14 31091318 31205018 1 - - -
MantaBND:0:3229:4813:1:1:0:0_MantaBND:0:3229:4813:1:1:0:1 BND chr3 173510100 173510105 + chr14 31150684 31150689 + 50 PASS 4 0 6 0 - - NAALADL2 - 5' NLGN1 5' SCFD1 - - - 3 - - - 9 0 - ENSG00000169760 chr3 173114074 174004434 1 ENSG00000092108 chr14 31091318 31205018 1 - - -
MantaBND:0:3229:8384:0:0:0:0_MantaBND:0:3229:8384:0:0:0:1 BND chr6 63628547 63629048 - chr14 31150182 31150552 - 55 PASS 8 0 0 0 - - - - - - 3' SCFD1 - - - - - - - - 0 - - NA - - - ENSG00000092108 chr14 31091318 31205018 1 - - -
MantaBND:0:3229:12696:0:0:0:1_MantaBND:0:3229:12696:0:0:0:0 BND chr8 117082386 117082991 + chr14 31150184 31150693 - 116 PASS 15 0 0 0 - - - - 3' LINC00536 3' SCFD1 - - - - - - - - 0 - ENSG00000249917 chr8 116962736 117337297 -1 ENSG00000092108 chr14 31091318 31205018 1 - - -
MantaBND:0:3229:12696:1:0:0:0_MantaBND:0:3229:12696:1:0:0:1 BND chr8 117082297 117082810 - chr14 31150726 31151202 + 116 PASS 8 0 0 0 - - - - 5' LINC00536 5' SCFD1 - - - - - - - 9 0 - ENSG00000249917 chr8 116962736 117337297 -1 ENSG00000092108 chr14 31091318 31205018 1 - - -
MantaBND:0:3229:15040:0:0:0:1_MantaBND:0:3229:15040:0:0:0:0 BND chr10 19494539 19495182 - chr14 31150155 31150716 - 76 PASS 7 0 0 0 - - - - - - 3' SCFD1 - - - - - - - - 0 - - NA - - - ENSG00000092108 chr14 31091318 31205018 1 - - -
MantaBND:0:3229:15040:1:0:0:0_MantaBND:0:3229:15040:1:0:0:1 BND chr10 19494648 19495247 + chr14 31150707 31151194 + 76 PASS 7 0 0 0 - - - - - - 5' SCFD1 - - - - - - - 9 0 - - NA - - - ENSG00000092108 chr14 31091318 31205018 1 - - -
MantaBND:0:3229:16873:0:0:0:1_MantaBND:0:3229:16873:0:0:0:0 BND chr11 22601197 22601795 - chr14 31150187 31150694 - 89 PASS 8 0 0 0 - - - - - - 3' SCFD1 - - - - - - - - 0 - - NA - - - ENSG00000092108 chr14 31091318 31205018 1 - - -
MantaBND:0:3229:16873:1:0:0:1_MantaBND:0:3229:16873:1:0:0:0 BND chr11 22601404 22601854 + chr14 31150771 31151207 + 89 PASS 12 0 0 0 - - - - - - 5' SCFD1 - - - - - - - 9 0 - - NA - - - ENSG00000092108 chr14 31091318 31205018 1 - - -
MantaBND:0:3229:21139:1:0:0:0_MantaBND:0:3229:21139:1:0:0:1 BND chr14 31150611 31150615 - chr15 28170013 28170017 + 99 PASS 13 0 22 0 - - - - 3' SCFD1 3' OCA2 - - - - - - - - 0 - ENSG00000092108 chr14 31091318 31205018 1 ENSG00000104044 chr15 28000021 28344504 -1 - - -
MantaBND:0:3229:21140:0:0:0:0_MantaBND:0:3229:21140:0:0:0:1 BND chr14 31150189 31150686 - chr15 47302737 47303349 - 72 PASS 11 0 0 0 - - - - 3' SCFD1 - - - - - - - - - - 0 - ENSG00000092108 chr14 31091318 31205018 1 - NA - - - - - -
MantaBND:0:3229:21142:0:0:0:1_MantaBND:0:3229:21142:0:0:0:0 BND chr14 31150663 31150669 - chr18 66008556 66008562 - 118 PASS 17 0 21 0 - - - - 3' SCFD1 - - - - - - - - - - 0 - ENSG00000092108 chr14 31091318 31205018 1 - NA - - - - - -
MantaBND:0:3229:21142:3:0:0:1_MantaBND:0:3229:21142:3:0:0:0 BND chr14 31150764 31151239 + chr18 66008449 66008985 + 118 PASS 7 0 0 0 - - - - 5' SCFD1 - - - - - 9 - - - - 0 - ENSG00000092108 chr14 31091318 31205018 1 - NA - - - - - -
MantaBND:0:3264:3265:0:3:0:0_MantaBND:0:3264:3265:0:3:0:1 BND chr4 64966187 64966188 - chrY 9429687 9429688 + 76 PASS 9 0 3 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
MantaBND:0:3264:3265:1:1:0:1_MantaBND:0:3264:3265:1:1:0:0 BND chr4 64966192 64966193 + chrY 9429403 9429404 - 76 PASS 2 0 6 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
MantaBND:0:3264:3266:0:0:0:0_MantaBND:0:3264:3266:0:0:0:1 BND chr2 22600776 22600779 + chrY 9429500 9429503 - 101 PASS 0 0 19 0 - - - - 3' AC068490.2 - - - - - - - - - - 0 - ENSG00000231200 chr2 22156208 22753977 -1 - NA - - - - - -
MantaBND:0:3264:3266:0:0:0:0_MantaBND:0:3264:3266:0:0:0:1 BND chr2 22600776 22600779 + chrY 9429500 9429503 - 101 PASS 0 0 19 0 - - - - 5' AC096570.2 - - - - - - - - - - 0 - ENSG00000234207 chr2 22600466 22704876 1 - NA - - - - - -
MantaBND:0:3264:3266:1:0:0:0_MantaBND:0:3264:3266:1:0:0:1 BND chr2 22600424 22600984 - chrY 9429599 9430011 + 101 PASS 3 0 0 0 - - - - 5' AC068490.2 - - - - - - - - - - 0 - ENSG00000231200 chr2 22156208 22753977 -1 - NA - - - - - -
MantaBND:0:3264:4040:0:2:0:0_MantaBND:0:3264:4040:0:2:0:1 BND chr3 10877759 10877763 - chrY 9429490 9429494 - 104 PASS 5 0 7 0 - - - - 3' SLC6A11 - - - - - - - - - - 0 - ENSG00000132164 chr3 10857885 10982419 1 - NA - - - - - -
MantaBND:0:3264:4040:1:0:0:0_MantaBND:0:3264:4040:1:0:0:1 BND chr3 10877480 10878083 + chrY 9429569 9430012 + 104 PASS 6 0 0 0 - - - - 5' SLC6A11 - - - - - 1 - - - - 0 - ENSG00000132164 chr3 10857885 10982419 1 - NA - - - - - -
MantaBND:0:3264:4846:0:0:0:1_MantaBND:0:3264:4846:0:0:0:0 BND chr3 174993486 174993986 - chrY 9429652 9430036 + 31 PASS 6 0 0 0 - - NAALADL2 - 3' NAALADL2 - - - - - - - - - - 0 - ENSG00000177694 chr3 174156363 175523428 1 - NA - - - - - -
MantaBND:0:3264:5861:0:1:0:1_MantaBND:0:3264:5861:0:1:0:0 BND chr8 80091672 80091675 + chrY 9429583 9429586 - 55 PASS 3 0 9 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
MantaBND:0:3264:5862:0:1:0:0_MantaBND:0:3264:5862:0:1:0:1 BND chr4 98800365 98800366 - chrY 9429687 9429688 + 80 PASS 6 0 5 0 - - - - 5' STPG2 - - - - - - - - - - 0 - ENSG00000163116 chr4 98105244 99064391 -1 - NA - - - - - -
MantaBND:0:3264:8379:0:2:0:1_MantaBND:0:3264:8379:0:2:0:0 BND chr6 58139806 58139811 - chrY 9429467 9429472 - 131 PASS 10 0 11 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
MantaBND:0:3264:8379:1:0:0:0_MantaBND:0:3264:8379:1:0:0:1 BND chr6 58139467 58140039 + chrY 9429555 9430074 + 131 PASS 14 0 0 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
MantaBND:0:3264:10913:0:0:0:0_MantaBND:0:3264:10913:0:0:0:1 BND chr7 78158915 78159473 + chrY 9429524 9430045 + 58 PASS 7 0 0 0 - - - - 3' MAGI2 - - - - - - - - - - 0 - ENSG00000187391 chr7 77646393 79082890 -1 - NA - - - - - -
MantaBND:0:3264:12334:0:0:0:1_MantaBND:0:3264:12334:0:0:0:0 BND chr8 59275104 59275618 + chrY 9429066 9429509 - 35 PASS 3 0 0 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
MantaBND:0:3264:12334:1:0:0:1_MantaBND:0:3264:12334:1:0:0:0 BND chr8 59275001 59275548 - chrY 9429519 9429956 + 35 PASS 2 0 0 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
MantaBND:0:3264:13332:1:0:0:0_MantaBND:0:3264:13332:1:0:0:1 BND chr9 32056731 32057302 - chrY 9429689 9430077 + 95 PASS 6 0 0 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
MantaBND:0:3264:13933:0:0:0:1_MantaBND:0:3264:13933:0:0:0:0 BND chr9 76147401 76147822 + chrY 9429062 9429553 - 53 PASS 3 0 0 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
MantaBND:0:3264:13933:1:0:0:1_MantaBND:0:3264:13933:1:0:0:0 BND chr9 76147109 76147687 - chrY 9429532 9430033 + 53 PASS 4 0 0 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
MantaBND:0:3264:17733:0:3:0:0_MantaBND:0:3264:17733:0:3:0:1 BND chr11 81263066 81263070 + chrY 9429461 9429465 - 103 PASS 8 0 10 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
MantaBND:0:3264:17733:1:0:0:1_MantaBND:0:3264:17733:1:0:0:0 BND chr11 81262754 81263276 - chrY 9429524 9430065 + 103 PASS 13 0 0 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
MantaBND:0:3264:17902:0:2:0:1_MantaBND:0:3264:17902:0:2:0:0 BND chr11 99331017 99331019 - chrY 9429421 9429423 - 72 PASS 10 0 8 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
MantaBND:0:3264:17902:1:0:0:0_MantaBND:0:3264:17902:1:0:0:1 BND chr11 99330895 99331280 + chrY 9429685 9430038 + 72 PASS 2 0 0 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
MantaBND:0:3264:22390:0:0:0:0_MantaBND:0:3264:22390:0:0:0:1 BND chr15 61531900 61532589 + chrY 9429487 9430077 + 73 PASS 9 0 0 0 - - - - - - - - - - - - - - - - 0 - - NA - - - - NA - - - - - -
MantaBND:0:3264:22759:0:0:0:1_MantaBND:0:3264:22759:0:0:0:0 BND chr15 93925389 93925989 + chrY 9429494 9430047 + 84 PASS 11 0 0 0 - - - - 5' RP11-266O8.1 - - - - - - - - - - 0 - ENSG00000257060 chr15 93855786 94112712 1 - NA - - - - - -
MantaBND:0:3425:3445:0:0:0:1_MantaBND:0:3425:3445:0:0:0:0 BND chr2 145747699 145748448 - chr9 115559359 115559816 - 105 PASS 15 0 0 0 - - - PALM2-AKAP2 3' TEX41 3' SNX30 - - - - - - - - 0 - ENSG00000226674 chr2 145425534 145940216 1 ENSG00000148158 chr9 115513118 115643951 1 - - -
MantaBND:0:3425:3445:1:0:0:1_MantaBND:0:3425:3445:1:0:0:0 BND chr2 145747735 145748255 + chr9 115559879 115560257 + 105 PASS 9 0 0 0 - - - PALM2-AKAP2 5' TEX41 5' SNX30 - - - 3 - - - - 0 - ENSG00000226674 chr2 145425534 145940216 1 ENSG00000148158 chr9 115513118 115643951 1 - - -
MantaBND:0:3425:3459:0:0:0:1_MantaBND:0:3425:3459:0:0:0:0 BND chr3 96353345 96353815 + chr9 115559360 115560026 - 97 PASS 10 0 0 0 - - - PALM2-AKAP2 - - 3' SNX30 - - - - - - - - 0 - - NA - - - ENSG00000148158 chr9 115513118 115643951 1 - - -