_running_experiments.ipynb

{
 "cells": [
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# Running experiments\n",
    "Run cross-validation using `--fold` and `--split`"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 1,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "INFO:root:Running experiments for wiki/iawiki-latest, outputs in wiki/iawiki-latest\n",
      "INFO:root:Using wiki/iawiki-latest/index_iawiki-latest.dawg\n",
      "INFO:root:Using wiki/iawiki-latest/ents-disambig.txt\n",
      "INFO:root:Using wiki/iawiki-latest/disambig.json\n",
      "INFO:root:Using wiki/iawiki-latest/iawiki-latest-paragraph-links\n",
      "INFO:root:Sweeping parameters {'head': [None], 'stem': ('',), 'min_count': (2,), 'split': [5], 'fold': [1, 2]}\n",
      "INFO:root:Sweeping parameters {'stem': [None], 'min_count': [2], 'freqnorm': (False,), 'badentfile': ('',), 'tokenscore_threshold': (0.1,), 'entropy_threshold': (1.0,), 'countratio_threshold': (0.5,), 'quantile_top_shadowed': (0,), 'cluster_threshold': [0.5]}\n",
      "INFO:root:Sweeping parameters {'head': [None], 'stem': [None], 'vectorizer': ('',), 'ent_feats_csv': ('',), 'balanced': (False,), 'usenil': (False,), 'split': [5], 'fold': [1]}\n",
      "INFO:root:Sweeping parameters {'bits': (20,)}\n",
      "INFO:root:Sweeping parameters {'runfile': [PosixPath('wiki/iawiki-latest/iawiki-latest-paragraph-links')], 'use_fallback': (True,), 'split': [5], 'fold': [1]}\n",
      "INFO:root:Running baseline...\n",
      "Predicting: 100%|██████████████████████| 11972/11972 [00:00<00:00, 18242.27it/s]\n",
      "INFO:root:micro  precision        0.874295\n",
      "       recall           0.874295\n",
      "       fscore           0.874295\n",
      "macro  precision        0.824055\n",
      "       recall           0.803768\n",
      "       fscore           0.809093\n",
      "       support      38805.000000\n",
      "dtype: float64\n",
      "INFO:root:Running model...\n",
      "Predicting: 100%|██████████████████████| 11972/11972 [00:00<00:00, 14345.83it/s]\n",
      "INFO:root:micro  precision        0.877799\n",
      "       recall           0.877799\n",
      "       fscore           0.877799\n",
      "macro  precision        0.827748\n",
      "       recall           0.807085\n",
      "       fscore           0.812927\n",
      "       support      38805.000000\n",
      "dtype: float64\n",
      "INFO:root:Sweeping parameters {'head': [None], 'stem': [None], 'vectorizer': ('',), 'ent_feats_csv': ('',), 'balanced': (False,), 'usenil': (False,), 'split': [5], 'fold': [1]}\n",
      "INFO:root:Sweeping parameters {'bits': (20,)}\n",
      "INFO:root:Sweeping parameters {'runfile': [PosixPath('wiki/iawiki-latest/iawiki-latest-paragraph-links')], 'use_fallback': (True,), 'split': [5], 'fold': [1]}\n",
      "INFO:root:Running baseline...\n",
      "Predicting: 100%|██████████████████████| 11972/11972 [00:00<00:00, 17616.30it/s]\n",
      "INFO:root:micro  precision        0.874295\n",
      "       recall           0.874295\n",
      "       fscore           0.874295\n",
      "macro  precision        0.824055\n",
      "       recall           0.803768\n",
      "       fscore           0.809093\n",
      "       support      38805.000000\n",
      "dtype: float64\n",
      "INFO:root:Running model...\n",
      "Predicting: 100%|██████████████████████| 11972/11972 [00:00<00:00, 13261.47it/s]\n",
      "INFO:root:micro  precision        0.878134\n",
      "       recall           0.878134\n",
      "       fscore           0.878134\n",
      "macro  precision        0.827807\n",
      "       recall           0.807175\n",
      "       fscore           0.813038\n",
      "       support      38805.000000\n",
      "dtype: float64\n",
      "INFO:root:Sweeping parameters {'stem': [None], 'min_count': [2], 'freqnorm': (False,), 'badentfile': ('',), 'tokenscore_threshold': (0.1,), 'entropy_threshold': (1.0,), 'countratio_threshold': (0.5,), 'quantile_top_shadowed': (0,), 'cluster_threshold': [0.5]}\n",
      "INFO:root:Sweeping parameters {'head': [None], 'stem': [None], 'vectorizer': ('',), 'ent_feats_csv': ('',), 'balanced': (False,), 'usenil': (False,), 'split': [5], 'fold': [2]}\n",
      "INFO:root:Sweeping parameters {'bits': (20,)}\n",
      "INFO:root:Sweeping parameters {'runfile': [PosixPath('wiki/iawiki-latest/iawiki-latest-paragraph-links')], 'use_fallback': (True,), 'split': [5], 'fold': [2]}\n",
      "INFO:root:Running baseline...\n",
      "Predicting: 100%|██████████████████████| 11957/11957 [00:00<00:00, 25108.09it/s]\n",
      "INFO:root:micro  precision        0.895722\n",
      "       recall           0.895722\n",
      "       fscore           0.895722\n",
      "macro  precision        0.877247\n",
      "       recall           0.861811\n",
      "       fscore           0.865458\n",
      "       support      38407.000000\n",
      "dtype: float64\n",
      "INFO:root:Running model...\n",
      "Predicting: 100%|██████████████████████| 11957/11957 [00:01<00:00, 11525.34it/s]\n",
      "INFO:root:micro  precision        0.898690\n",
      "       recall           0.898690\n",
      "       fscore           0.898690\n",
      "macro  precision        0.880691\n",
      "       recall           0.865038\n",
      "       fscore           0.869222\n",
      "       support      38407.000000\n",
      "dtype: float64\n",
      "INFO:root:Sweeping parameters {'head': [None], 'stem': [None], 'vectorizer': ('',), 'ent_feats_csv': ('',), 'balanced': (False,), 'usenil': (False,), 'split': [5], 'fold': [2]}\n",
      "INFO:root:Sweeping parameters {'bits': (20,)}\n",
      "INFO:root:Sweeping parameters {'runfile': [PosixPath('wiki/iawiki-latest/iawiki-latest-paragraph-links')], 'use_fallback': (True,), 'split': [5], 'fold': [2]}\n",
      "INFO:root:Running baseline...\n",
      "Predicting: 100%|██████████████████████| 11957/11957 [00:00<00:00, 23652.54it/s]\n",
      "INFO:root:micro  precision        0.895722\n",
      "       recall           0.895722\n",
      "       fscore           0.895722\n",
      "macro  precision        0.877247\n",
      "       recall           0.861811\n",
      "       fscore           0.865458\n",
      "       support      38407.000000\n",
      "dtype: float64\n",
      "INFO:root:Running model...\n",
      "Predicting: 100%|██████████████████████| 11957/11957 [00:01<00:00, 11056.60it/s]\n",
      "INFO:root:micro  precision        0.898951\n",
      "       recall           0.898951\n",
      "       fscore           0.898951\n",
      "macro  precision        0.880854\n",
      "       recall           0.865183\n",
      "       fscore           0.869402\n",
      "       support      38407.000000\n",
      "dtype: float64\n"
     ]
    }
   ],
   "source": [
    "!minimel -v experiment 'wiki/iawiki-latest' --fold 1 2 --split 5 --cluster-threshold 0.5 --evaluate"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "metadata": {},
   "outputs": [
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       "      <th></th>\n",
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       "      <td>1</td>\n",
       "      <td>2</td>\n",
       "      <td>0.1</td>\n",
       "      <td>1.0</td>\n",
       "      <td>0.5</td>\n",
       "      <td>0.50</td>\n",
       "      <td>5</td>\n",
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       "      <td>5</td>\n",
       "      <td>1</td>\n",
       "      <td>/Users/benno/Documents/postdoc/projects/minima...</td>\n",
       "      <td>0.874295</td>\n",
       "      <td>0.874295</td>\n",
       "      <td>0.874295</td>\n",
       "      <td>0.824055</td>\n",
       "      <td>0.803768</td>\n",
       "      <td>0.809093</td>\n",
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       "      <td>0.807175</td>\n",
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       "      <td>0.1</td>\n",
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       "      <td>0.865038</td>\n",
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       "      <td>0.895722</td>\n",
       "      <td>0.895722</td>\n",
       "      <td>0.895722</td>\n",
       "      <td>0.877247</td>\n",
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       "      <td>0.865458</td>\n",
       "      <td>38407.0</td>\n",
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       "    <tr>\n",
       "      <th>7</th>\n",
       "      <td>model</td>\n",
       "      <td>2</td>\n",
       "      <td>5</td>\n",
       "      <td>2</td>\n",
       "      <td>2</td>\n",
       "      <td>0.1</td>\n",
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       "      <td>0.5</td>\n",
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       "      <td>...</td>\n",
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       "<p>8 rows × 23 columns</p>\n",
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      ],
      "text/plain": [
       "      model  count.min_count  count.split  count.fold  clean.min_count  \\\n",
       "0  baseline                2            5           1                2   \n",
       "1     model                2            5           1                2   \n",
       "2  baseline                2            5           1                2   \n",
       "3     model                2            5           1                2   \n",
       "4  baseline                2            5           2                2   \n",
       "5     model                2            5           2                2   \n",
       "6  baseline                2            5           2                2   \n",
       "7     model                2            5           2                2   \n",
       "\n",
       "   clean.tokenscore_threshold  clean.entropy_threshold  \\\n",
       "0                         0.1                      1.0   \n",
       "1                         0.1                      1.0   \n",
       "2                         0.1                      1.0   \n",
       "3                         0.1                      1.0   \n",
       "4                         0.1                      1.0   \n",
       "5                         0.1                      1.0   \n",
       "6                         0.1                      1.0   \n",
       "7                         0.1                      1.0   \n",
       "\n",
       "   clean.countratio_threshold  clean.cluster_threshold  vec.split  ...  \\\n",
       "0                         0.5                     0.25          5  ...   \n",
       "1                         0.5                     0.25          5  ...   \n",
       "2                         0.5                     0.50          5  ...   \n",
       "3                         0.5                     0.50          5  ...   \n",
       "4                         0.5                     0.25          5  ...   \n",
       "5                         0.5                     0.25          5  ...   \n",
       "6                         0.5                     0.50          5  ...   \n",
       "7                         0.5                     0.50          5  ...   \n",
       "\n",
       "   run.split  run.fold                                       run.fallback  \\\n",
       "0          5         1  /Users/benno/Documents/postdoc/projects/minima...   \n",
       "1          5         1  /Users/benno/Documents/postdoc/projects/minima...   \n",
       "2          5         1  /Users/benno/Documents/postdoc/projects/minima...   \n",
       "3          5         1  /Users/benno/Documents/postdoc/projects/minima...   \n",
       "4          5         2  /Users/benno/Documents/postdoc/projects/minima...   \n",
       "5          5         2  /Users/benno/Documents/postdoc/projects/minima...   \n",
       "6          5         2  /Users/benno/Documents/postdoc/projects/minima...   \n",
       "7          5         2  /Users/benno/Documents/postdoc/projects/minima...   \n",
       "\n",
       "   micro.precision  micro.recall micro.fscore  macro.precision  macro.recall  \\\n",
       "0         0.874295      0.874295     0.874295         0.824055      0.803768   \n",
       "1         0.877799      0.877799     0.877799         0.827748      0.807085   \n",
       "2         0.874295      0.874295     0.874295         0.824055      0.803768   \n",
       "3         0.878134      0.878134     0.878134         0.827807      0.807175   \n",
       "4         0.895722      0.895722     0.895722         0.877247      0.861811   \n",
       "5         0.898690      0.898690     0.898690         0.880691      0.865038   \n",
       "6         0.895722      0.895722     0.895722         0.877247      0.861811   \n",
       "7         0.898951      0.898951     0.898951         0.880854      0.865183   \n",
       "\n",
       "   macro.fscore  .support  \n",
       "0      0.809093   38805.0  \n",
       "1      0.812927   38805.0  \n",
       "2      0.809093   38805.0  \n",
       "3      0.813038   38805.0  \n",
       "4      0.865458   38407.0  \n",
       "5      0.869222   38407.0  \n",
       "6      0.865458   38407.0  \n",
       "7      0.869402   38407.0  \n",
       "\n",
       "[8 rows x 23 columns]"
      ]
     },
     "execution_count": 2,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "import pandas as pd\n",
    "pd.read_csv('wiki/iawiki-latest/evaluation.csv', index_col=0)"
   ]
  }
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