r41_env.yml

## this environment might require cmake to be installed!
## e.g. sudo apt-get install cmake 
name: r41_env
channels:
  - conda-forge
  - bioconda
  - nodefaults
dependencies:
  - r-base=4.1  ## always specify the R version (faster solve; more stable)
  - r-essentials
  - r-remotes # to install qUMI package from github source
  - bioconductor-monocle #compute census counts
  - bioconductor-singlecellexperiment
  - bioconductor-edaseq
  - bioconductor-scrnaseq
  - bioconductor-scran # convert sce data to monocle cds data