diff --git a/.github/workflows/conda-build.yml b/.github/workflows/conda-build.yml index 2f4bbd8..55ba3b2 100644 --- a/.github/workflows/conda-build.yml +++ b/.github/workflows/conda-build.yml @@ -31,15 +31,4 @@ jobs: conda build purge-all conda config --set solver libmamba conda config --set channel_priority strict - conda build recipe --suppress-variables --override-channels --channel conda-forge --channel bioconda --no-anaconda-upload --output-folder ./ - mamba install ./noarch/quantms-utils-0.0.14-py_0.tar.bz2 --update-all - mamba env update --file environment.yml - conda list - - - name: Download test data - run: | - wget https://ftp.pride.ebi.ac.uk/pub/databases/pride/resources/proteomes/quantms-ci-github/quantms-utils/TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01.mzML - wget https://ftp.pride.ebi.ac.uk/pub/databases/pride/resources/proteomes/quantms-ci-github/quantms-utils/TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01_comet.idXML - - name: Test percolator ms2rescore - run: | - quantmsutilsc ms2rescore --psm_file TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01_comet.idXML --spectrum_path TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01.mzML --processes 2 --ms2pip_model HCD2021 --feature_generators 'ms2pip,deeplc' --id_decoy_pattern ^rev --test_fdr 0.05 + conda build recipe --suppress-variables --override-channels --channel conda-forge --channel bioconda --no-anaconda-upload --output-folder ./ \ No newline at end of file