From 4ecfad8c5bd9d5237f737e34abc17967dc4a3fd8 Mon Sep 17 00:00:00 2001 From: Yasset Perez-Riverol Date: Thu, 21 Nov 2024 16:27:23 +0000 Subject: [PATCH] rolloback to ms2rescore 3.0.3 with fixed versions --- .github/workflows/conda-build.yml | 1 + 1 file changed, 1 insertion(+) diff --git a/.github/workflows/conda-build.yml b/.github/workflows/conda-build.yml index 42927be..76863f7 100644 --- a/.github/workflows/conda-build.yml +++ b/.github/workflows/conda-build.yml @@ -47,4 +47,5 @@ jobs: wget https://ftp.pride.ebi.ac.uk/pub/databases/pride/resources/proteomes/quantms-ci-github/quantms-utils/TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01_comet.idXML - name: Test percolator ms2rescore run: | + conda activate quantmsutils quantmsutilsc ms2rescore --psm_file TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01_comet.idXML --spectrum_path TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01.mzML --processes 2 --ms2pip_model HCD2021 --feature_generators 'ms2pip,deeplc' --id_decoy_pattern ^rev --test_fdr 0.05 \ No newline at end of file