From 5c78181ba2613f03787806cf467a70b699a4f9a4 Mon Sep 17 00:00:00 2001
From: Yasset Perez-Riverol <ypriverol@gmail.com>
Date: Tue, 28 May 2024 15:42:39 +0100
Subject: [PATCH] small code refinements

---
 environment.yml  | 6 +++---
 requirements.txt | 2 +-
 setup.py         | 2 +-
 3 files changed, 5 insertions(+), 5 deletions(-)

diff --git a/environment.yml b/environment.yml
index 4bacf18..b37fe97 100644
--- a/environment.yml
+++ b/environment.yml
@@ -7,13 +7,13 @@ channels:
 dependencies:
   - click
   - sdrf-pipelines
-  - pyopenms
+  - bioconda::pyopenms==3.1.0
   - ms2rescore=3.0.2
-  - psm-utils=0.8.0
+  - psm-utils=0.7.4
   - pydantic
   - pandas
   - protobuf>=3.9.2,<4  # Ensure compatibility with tensorboard
-  - numpy
+  - numpy=1.26.3
   - pip
   - pip:
     - tensorboard
diff --git a/requirements.txt b/requirements.txt
index 5b985c4..773e1e1 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -5,4 +5,4 @@ ms2rescore==3.0.2
 psm-utils==0.8.0
 pydantic
 pandas
-numpy
\ No newline at end of file
+numpy==1.26.3
\ No newline at end of file
diff --git a/setup.py b/setup.py
index b0da1a2..373b032 100644
--- a/setup.py
+++ b/setup.py
@@ -31,7 +31,7 @@
 INSTALL_REQUIRES = [
     "click",
     "sdrf-pipelines",
-    "pyopenms",
+    "pyopenms==3.1.0",
     "ms2rescore==3.0.2",
     "psm-utils==0.8.0",
     "pydantic",