Drift correction

[prisca-chapouton]

The points or tracks do not appear when I use the functionality "correct drift> create track" (the drift overlay is active). The instruction "Add or change track point: press [A]" leads to an orientation change, but not to a visible point. Am I doing something wrong?
Thank you!

[tischi]

Dear @prisca-chapouton,

Thank you for reporting!

I just tried it out and for me pressing A does add a visible point.
Orientation changes are usually achieved with pressing Shift+X or Shift+Y or Shift+Z

@NicoKiaru are you aware of anything in BDV that would make the A key trigger an orientation change?

[prisca-chapouton]

Dear Christian, Thanks a lot for your answer. In fact I wanted to try again with "a" instead of "A" as I thought it might have been my mistake. However, the BDP2 plugin does not open anymore, even after updating Fiji. This is the message I get: Setting SciJava uiService. Setting SciJava context. Exception in thread "AWT-EventQueue-0" java.lang.NoClassDefFoundError: net/imglib2/cache/img/optional/CacheOptions$CacheType at de.embl.cba.bdp2.process.cache.ConfigureLazyLoadingCommand.<init>(ConfigureLazyLoadingCommand.java:31) at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62) at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) at java.lang.reflect.Constructor.newInstance(Constructor.java:423) at java.lang.Class.newInstance(Class.java:442) at org.scijava.plugin.PluginInfo.createInstance(PluginInfo.java:304) at de.embl.cba.bdp2.utils.PluginProvider.register(PluginProvider.java:68) at de.embl.cba.bdp2.utils.PluginProvider.getNames(PluginProvider.java:94) at de.embl.cba.bdp2.BigDataProcessor2Menu.populateProcessMenu(BigDataProcessor2Menu.java:108) at de.embl.cba.bdp2.BigDataProcessor2Menu.<init>(BigDataProcessor2Menu.java:85) at de.embl.cba.bdp2.BigDataProcessor2MenuActions.<init>(BigDataProcessor2MenuActions.java:50) at de.embl.cba.bdp2.BigDataProcessor2UI.showUI(BigDataProcessor2UI.java:26) at de.embl.cba.bdp2.BigDataProcessor2Command.lambda$run$0(BigDataProcessor2Command.java:42) at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:311) at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758) at java.awt.EventQueue.access$500(EventQueue.java:97) at java.awt.EventQueue$3.run(EventQueue.java:709) at java.awt.EventQueue$3.run(EventQueue.java:703) at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74) at java.awt.EventQueue.dispatchEvent(EventQueue.java:728) at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205) at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116) at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93) at java.awt.EventDispatchThread.run(EventDispatchThread.java:82) Best, Prisca

[tischi]

@prisca-chapouton

Thank you again for reporting! We are struggling at the moment indeed to get BDP2 running as there were some recent changes in Fiji and now there are some incompatibilities.

Could you please do us a favor?

1. Look into the jars folder of your current Fiji and check the version of the imglib2-cache jar? Could you please let me know of the version number? I think it should be: -1.0.0-beta-16.jar
2. Download a new Fiji
3. Add the BigDataProcessor Update Site to the new Fiji
4. Check again the version of the imglib2-cache jar?
5. Check whether BigDataProcessor2 works in the new Fiji

[prisca-chapouton]

Dear Christian,
I had this version in my jar folder:
imglib2-cache-1.0.0-beta-13.jar
I installed a new fiji, and now have this version:
imglib2-cache-1.0.0-beta-16.jar
and I can open the big data processor now.
Thank you!
Best,
Prisca

[tischi]

@prisca-chapouton
Thank you!
Great!
And does the [A] key work for you as well?

[prisca-chapouton]

Hello Christian,
yes, the [A] key works. I have various other java error notifications when trying to use Labkit and Clij2, but I will post it on the image.sc forum.
Thanks!

[tischi]

I have various other java error notifications when trying to use Labkit and Clij2, but I will post it on the image.sc forum.

Yes, please do this. As said there have been major updates and we are struggling to get everything compatible again.

For now I could advise you have a special Fiji, where you only activate the BigDataProcessor update site!

For example download a fresh Fiji, copy the whole folder to the Desktop and rename the folder to Fiji-BDP2.app and then add the BigDataProcessor update site.