.gitlab-ci.yml

test_py27:
    # Preparation
    # The tests of the CLI makes it necessary to create 'develop --user' installations.
    # 1) clean possible remnants of previous develop--user installations
    # 2) clone and build Cadishi, requires deploy-key
    # 3) build Capriqorn
    before_script:
        - source /opt/anaconda/anavars2.sh
        - export BASE=`pwd`
        - rm -f ~/.local/lib/python2.7/site-packages/cadishi.egg-link
        - rm -f ~/.local/lib/python2.7/site-packages/capriqorn.egg-link
        - git clone git@gitlab.mpcdf.mpg.de:MPIBP-Hummer/Cadishi.git
        - cd Cadishi
        - CAD_CUDA=0 python setup.py develop --user
        - cd $BASE
        - python setup.py develop --user
    script:
        # Run the included unit test cases
        - py.test capriqorn
        # Call the Capriqorn CLI by running the trivial included test case
        - mkdir tmp
        - cd tmp
        - capriq --help
        - capriq --version
        - capriq example
        - capriq preproc
        - capriq histo
        - capriq postproc
        - cd postprocessor_output
        - capriq unpack postprocessor.h5
        - capriq merge --output foo.h5 postprocessor.h5
        # call the parallel pipeline testcases
        - capriq preproc ${BASE}/capriqorn/tests/data/test_preprocessor_parallel_success.yaml
        # cannot get the following tests to work, gitlab CI seems to detect dying processes
        # - capriq preproc ${BASE}/capriqorn/tests/data/test_preprocessor_parallel_child_failure.yaml  || [ $? == 1 ]
        # - capriq preproc ${BASE}/capriqorn/tests/data/test_preprocessor_parallel_master_failure.yaml || [ $? == 1 ]
        - cd $BASE
        # Test the documentation creation.
        - python setup.py build_sphinx
        # Test the tarball creation.
        - python setup.py sdist --formats=gztar
    after_script:
        - source /opt/anaconda/anavars2.sh
        - python setup.py develop --user --uninstall || true
        - rm -f ~/.local/lib/python2.7/site-packages/cadishi.egg-link
        - rm -f ~/.local/lib/python2.7/site-packages/capriqorn.egg-link