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Adding sourmash and making it the default over mash Lint #54: Commit c42ac2e pushed by marchoeppner
November 19, 2024 09:16 1m 33s dev
dev
November 19, 2024 09:16 1m 33s
Minor config change Lint #53: Commit eb69484 pushed by marchoeppner
November 11, 2024 13:02 1m 30s dev
dev
November 11, 2024 13:02 1m 30s
Linting errors in python script Lint #52: Commit 51a2689 pushed by marchoeppner
November 7, 2024 09:21 1m 29s dev
dev
November 7, 2024 09:21 1m 29s
Adding STECfinder to serotyping tools Lint #51: Commit 6d7807a pushed by marchoeppner
November 7, 2024 08:54 1m 30s dev
dev
November 7, 2024 08:54 1m 30s
Updating template Lint #50: Commit 6dcfaad pushed by marchoeppner
November 6, 2024 05:22 1m 30s dev
dev
November 6, 2024 05:22 1m 30s
Updating jinja template Lint #49: Commit 2005645 pushed by marchoeppner
October 28, 2024 08:42 1m 31s dev
dev
October 28, 2024 08:42 1m 31s
Updating report with additional metrics and new design Lint #48: Commit 893c336 pushed by marchoeppner
October 25, 2024 12:09 1m 38s dev
dev
October 25, 2024 12:09 1m 38s
Fixing conda env for html reporting module Lint #47: Commit 30addea pushed by marchoeppner
October 23, 2024 07:41 2m 17s dev
dev
October 23, 2024 07:41 2m 17s
Updating Jinja template Lint #46: Commit e5c9c13 pushed by marchoeppner
October 23, 2024 05:31 1m 31s dev
dev
October 23, 2024 05:31 1m 31s
Adding separate coverge metrics per sequencing technology to JSON Lint #45: Commit 9798de7 pushed by marchoeppner
October 18, 2024 11:11 1m 36s dev
dev
October 18, 2024 11:11 1m 36s
Expanding and re-structuring report JSON and upping the number of tax… Lint #44: Commit a98923e pushed by marchoeppner
October 16, 2024 07:31 1m 29s dev
dev
October 16, 2024 07:31 1m 29s
Adding all relevant kraken results to summary json and removing redun… Lint #43: Commit 73ea29e pushed by marchoeppner
October 15, 2024 12:36 1m 31s dev
dev
October 15, 2024 12:36 1m 31s
Merge pull request #8 from bio-raum/dev Lint #42: Commit 9ef1779 pushed by marchoeppner
October 2, 2024 11:22 1m 31s main
main
October 2, 2024 11:22 1m 31s
Dev Lint #41: Pull request #8 opened by marchoeppner
October 2, 2024 11:06 1m 30s dev
dev
October 2, 2024 11:06 1m 30s
Fixing linting errors Lint #40: Commit 5d3c162 pushed by marchoeppner
October 2, 2024 11:06 1m 36s dev
dev
October 2, 2024 11:06 1m 36s
Adding Snippy to count SNPs in the finished assembly Lint #39: Commit 19c89f8 pushed by marchoeppner
October 2, 2024 05:17 1m 26s dev
dev
October 2, 2024 05:17 1m 26s
Adding sample-level coverage to primary MultiQC report Lint #38: Commit 60ad4c9 pushed by marchoeppner
October 1, 2024 07:12 4m 58s dev
dev
October 1, 2024 07:12 4m 58s
Adding bam merging Lint #37: Commit 7e637ec pushed by marchoeppner
September 30, 2024 12:15 1m 38s dev
dev
September 30, 2024 12:15 1m 38s
Updating mlst workflow Lint #36: Commit 98309ab pushed by marchoeppner
September 17, 2024 12:41 1m 38s dev
dev
September 17, 2024 12:41 1m 38s
Quast and Busco now use the chromsome contigs and omit plasmids Lint #35: Commit 4dc846b pushed by marchoeppner
September 10, 2024 10:43 1m 27s dev
dev
September 10, 2024 10:43 1m 27s
Merge pull request #7 from bio-raum/dev Lint #34: Commit 2ef1f25 pushed by marchoeppner
September 10, 2024 07:03 1m 30s main
main
September 10, 2024 07:03 1m 30s
Dev Lint #33: Pull request #7 opened by marchoeppner
September 10, 2024 07:03 1m 26s dev
dev
September 10, 2024 07:03 1m 26s
Updating documentation and images Lint #32: Commit ab7ea4e pushed by marchoeppner
September 10, 2024 07:00 1m 31s dev
dev
September 10, 2024 07:00 1m 31s
Fixing input channels for coverage calculation Lint #31: Commit 440a6f4 pushed by marchoeppner
September 10, 2024 06:03 1m 35s dev
dev
September 10, 2024 06:03 1m 35s
Removing validation of discontinued pipeline option Lint #30: Commit 13da137 pushed by marchoeppner
September 9, 2024 12:26 1m 39s dev
dev
September 9, 2024 12:26 1m 39s