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Nicola Segata edited this page Apr 6, 2020
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MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea and Eukaryotes) from metagenomic shotgun sequencing data (i.e. not 16S) with species-level. With the StrainPhlAn module, it is now possible to perform accurate strain-level microbial profiling.
You can find here the wiki for the new version (version 3.0) of MetaPhlAn.
A wiki for the previous version MetaPhlAn2 is available here