This release fixes some package check issues and broken documentation links
This release adds functionality for fetching fastq files in R from the SRA
listMarkers
renamed tolistLoci
queryFasta
renamed toquerySanger
fastqDump
: Download or convert fastq data from NCBI Sequence Read Archive in a single thread (Windows compatible)fasterqDump
: Download or convert fastq data from NCBI Sequence Read Archive using multiple threadsprefetch
: Download data from NCBI Sequence Read Archive in .sra format using FASP or HTTPS protocols
This is a major release, which updates the package to work with the latest GeOMe changes.
- queryMetadata:
- query across multiple project & all data in GeOMe
- query syntax has changed and now resembles SQL
- query results are returned for each entity. No longer a flat table representation