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How to deal with multiallelic variants? #80

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leedchou opened this issue Apr 13, 2022 · 0 comments
Open

How to deal with multiallelic variants? #80

leedchou opened this issue Apr 13, 2022 · 0 comments

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@leedchou
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Hi, @msahraeian

I am wondering how did you deal with those multiallelic variants. If there is a site on genome with 3 or more alternate variant alleles meets the conditions (eg. min_af), Should I keep all these alleles or a major allele?

Sincerely
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@leedchou