diff --git a/weeks/week01/7_tf_binding_promoters.ipynb b/weeks/week01/7_tf_binding_promoters.ipynb index 30395e6..95b59a4 100644 --- a/weeks/week01/7_tf_binding_promoters.ipynb +++ b/weeks/week01/7_tf_binding_promoters.ipynb @@ -52,7 +52,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 10, "metadata": { "collapsed": false, "nbgrader": { @@ -61,7 +61,15 @@ "solution": false } }, - "outputs": [], + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "/home/ucsd-train27/code/biom262-2016/weeks/week01/data\n" + ] + } + ], "source": [ "cd ~/code/biom262-2016/weeks/week01/data" ] @@ -200,7 +208,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 11, "metadata": { "collapsed": false, "deletable": false, @@ -216,7 +224,7 @@ "outputs": [], "source": [ "%%bash --out exercise1\n", - "# YOUR CODE HERE\\n\n", + "cat tf.bed | awk '{if ($4 == \"NFKB\") print$0}' > tf.nfkb.bed\n", "\n", "wc -l tf.nfkb.bed\n", "echo '--- First 10 lines ---'\n", @@ -245,18 +253,60 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 12, "metadata": { "collapsed": false }, - "outputs": [], + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "702 tf.nfkb.bed\n", + "--- First 10 lines ---\n", + "chr22\t17565763\t17566145\tNFKB\t406\t.\t17565763\t17566145\t0\t1\t382,\t0,\n", + "chr22\t17568509\t17568945\tNFKB\t354\t.\t17568509\t17568945\t0\t1\t436,\t0,\n", + "chr22\t17700141\t17700502\tNFKB\t525\t.\t17700141\t17700502\t0\t1\t361,\t0,\n", + "chr22\t17701962\t17702278\tNFKB\t295\t.\t17701962\t17702278\t0\t1\t316,\t0,\n", + "chr22\t17709521\t17709797\tNFKB\t300\t.\t17709521\t17709797\t0\t1\t276,\t0,\n", + "chr22\t17724391\t17724724\tNFKB\t413\t.\t17724391\t17724724\t0\t1\t333,\t0,\n", + "chr22\t17738401\t17738677\tNFKB\t462\t.\t17738401\t17738677\t0\t1\t276,\t0,\n", + "chr22\t17738857\t17739282\tNFKB\t573\t.\t17738857\t17739282\t0\t1\t425,\t0,\n", + "chr22\t17761088\t17761435\tNFKB\t244\t.\t17761088\t17761435\t0\t1\t347,\t0,\n", + "chr22\t17784788\t17785118\tNFKB\t1000\t.\t17784788\t17785118\t0\t1\t330,\t0,\n", + "--- Random 10 lines ---\n", + "chr22\t17700141\t17700502\tNFKB\t525\t.\t17700141\t17700502\t0\t1\t361,\t0,\n", + "chr22\t17701962\t17702278\tNFKB\t295\t.\t17701962\t17702278\t0\t1\t316,\t0,\n", + "chr22\t17709521\t17709797\tNFKB\t300\t.\t17709521\t17709797\t0\t1\t276,\t0,\n", + "chr22\t17738401\t17738677\tNFKB\t462\t.\t17738401\t17738677\t0\t1\t276,\t0,\n", + "chr22\t17738857\t17739282\tNFKB\t573\t.\t17738857\t17739282\t0\t1\t425,\t0,\n", + "chr22\t17761088\t17761435\tNFKB\t244\t.\t17761088\t17761435\t0\t1\t347,\t0,\n", + "chr22\t17784788\t17785118\tNFKB\t1000\t.\t17784788\t17785118\t0\t1\t330,\t0,\n", + "chr22\t18111762\t18112038\tNFKB\t453\t.\t18111762\t18112038\t0\t1\t276,\t0,\n", + "chr22\t18225198\t18225524\tNFKB\t428\t.\t18225198\t18225524\t0\t1\t326,\t0,\n", + "chr22\t18278491\t18278848\tNFKB\t1000\t.\t18278491\t18278848\t0\t1\t357,\t0,\n", + "--- Last 10 lines ---\n", + "chr22\t50969418\t50969694\tNFKB\t415\t.\t50969418\t50969694\t0\t1\t276,\t0,\n", + "chr22\t50970799\t50971099\tNFKB\t298\t.\t50970799\t50971099\t0\t1\t300,\t0,\n", + "chr22\t50978032\t50978392\tNFKB\t1000\t.\t50978032\t50978392\t0\t1\t360,\t0,\n", + "chr22\t50979332\t50979632\tNFKB\t307\t.\t50979332\t50979632\t0\t1\t300,\t0,\n", + "chr22\t50980831\t50981158\tNFKB\t365\t.\t50980831\t50981158\t0\t1\t327,\t0,\n", + "chr22\t51001317\t51001593\tNFKB\t380\t.\t51001317\t51001593\t0\t1\t276,\t0,\n", + "chr22\t51021040\t51021316\tNFKB\t484\t.\t51021040\t51021316\t0\t1\t276,\t0,\n", + "chr22\t51021478\t51021754\tNFKB\t363\t.\t51021478\t51021754\t0\t1\t276,\t0,\n", + "chr22\t51058900\t51059230\tNFKB\t498\t.\t51058900\t51059230\t0\t1\t330,\t0,\n", + "chr22\t51060107\t51060383\tNFKB\t354\t.\t51060107\t51060383\t0\t1\t276,\t0,\n", + "\n" + ] + } + ], "source": [ "print(exercise1)" ] }, { "cell_type": "code", - "execution_count": null, + "execution_count": 13, "metadata": { "collapsed": false, "deletable": false, @@ -547,7 +597,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 14, "metadata": { "collapsed": false, "deletable": false, @@ -562,7 +612,7 @@ "outputs": [], "source": [ "%%bash --out exercise2\n", - "# YOUR CODE HERE\\n\n", + "cat gencode.v19.annotation.chr22.gtf | awk '{if($3 == \"transcript\")print}' > gencode.v19.annotation.chr22.transcript.gtf\n", "\n", "wc -l gencode.v19.annotation.chr22.transcript.gtf\n", "echo '--- First 10 lines ---'\n", @@ -591,19 +641,61 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 15, "metadata": { "collapsed": false, "scrolled": false }, - "outputs": [], + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "4459 gencode.v19.annotation.chr22.transcript.gtf\n", + "--- First 10 lines ---\n", + "chr22\tHAVANA\ttranscript\t16062157\t16063236\t.\t+\t.\tgene_id \"ENSG00000233866.1\"; transcript_id \"ENST00000424770.1\"; gene_type \"lincRNA\"; gene_status \"KNOWN\"; gene_name \"LA16c-4G1.3\"; transcript_type \"lincRNA\"; transcript_status \"KNOWN\"; transcript_name \"LA16c-4G1.3-001\"; level 2; tag \"basic\"; havana_gene \"OTTHUMG00000140195.1\"; havana_transcript \"OTTHUMT00000276574.1\";\n", + "chr22\tHAVANA\ttranscript\t16076052\t16076172\t.\t-\t.\tgene_id \"ENSG00000229286.1\"; transcript_id \"ENST00000448070.1\"; gene_type \"pseudogene\"; gene_status \"KNOWN\"; gene_name \"LA16c-4G1.4\"; transcript_type \"unprocessed_pseudogene\"; transcript_status \"KNOWN\"; transcript_name \"LA16c-4G1.4-001\"; level 2; ont \"PGO:0000005\"; havana_gene \"OTTHUMG00000140193.1\"; havana_transcript \"OTTHUMT00000276571.1\";\n", + "chr22\tHAVANA\ttranscript\t16084249\t16084826\t.\t-\t.\tgene_id \"ENSG00000235265.1\"; transcript_id \"ENST00000413156.1\"; gene_type \"pseudogene\"; gene_status \"KNOWN\"; gene_name \"LA16c-4G1.5\"; transcript_type \"unprocessed_pseudogene\"; transcript_status \"KNOWN\"; transcript_name \"LA16c-4G1.5-001\"; level 2; ont \"PGO:0000005\"; havana_gene \"OTTHUMG00000140197.1\"; havana_transcript \"OTTHUMT00000276576.1\";\n", + "chr22\tHAVANA\ttranscript\t16100517\t16124973\t.\t-\t.\tgene_id \"ENSG00000223875.1\"; transcript_id \"ENST00000420638.1\"; gene_type \"pseudogene\"; gene_status \"KNOWN\"; gene_name \"NBEAP3\"; transcript_type \"unprocessed_pseudogene\"; transcript_status \"KNOWN\"; transcript_name \"NBEAP3-001\"; level 2; ont \"PGO:0000005\"; havana_gene \"OTTHUMG00000140196.1\"; havana_transcript \"OTTHUMT00000276575.1\";\n", + "chr22\tHAVANA\ttranscript\t16122720\t16123768\t.\t+\t.\tgene_id \"ENSG00000215270.3\"; transcript_id \"ENST00000398242.2\"; gene_type \"pseudogene\"; gene_status \"KNOWN\"; gene_name \"LA16c-60H5.7\"; transcript_type \"processed_pseudogene\"; transcript_status \"KNOWN\"; transcript_name \"LA16c-60H5.7-001\"; level 1; ont \"PGO:0000004\"; tag \"pseudo_consens\"; havana_gene \"OTTHUMG00000140200.1\"; havana_transcript \"OTTHUMT00000276581.1\";\n", + "chr22\tHAVANA\ttranscript\t16147979\t16192971\t.\t-\t.\tgene_id \"ENSG00000206195.6\"; transcript_id \"ENST00000447898.1\"; gene_type \"processed_transcript\"; gene_status \"NOVEL\"; gene_name \"AP000525.9\"; transcript_type \"lincRNA\"; transcript_status \"KNOWN\"; transcript_name \"AP000525.9-002\"; level 2; tag \"basic\"; havana_gene \"OTTHUMG00000185288.2\"; havana_transcript \"OTTHUMT00000276780.1\";\n", + "chr22\tHAVANA\ttranscript\t16150255\t16193000\t.\t-\t.\tgene_id \"ENSG00000206195.6\"; transcript_id \"ENST00000437781.1\"; gene_type \"processed_transcript\"; gene_status \"NOVEL\"; gene_name \"AP000525.9\"; transcript_type \"lincRNA\"; transcript_status \"KNOWN\"; transcript_name \"AP000525.9-003\"; level 2; havana_gene \"OTTHUMG00000185288.2\"; havana_transcript \"OTTHUMT00000276579.1\";\n", + "chr22\tHAVANA\ttranscript\t16150529\t16193004\t.\t-\t.\tgene_id \"ENSG00000206195.6\"; transcript_id \"ENST00000413768.1\"; gene_type \"processed_transcript\"; gene_status \"NOVEL\"; gene_name \"AP000525.9\"; transcript_type \"lincRNA\"; transcript_status \"KNOWN\"; transcript_name \"AP000525.9-001\"; level 2; tag \"non_canonical_polymorphism\"; havana_gene \"OTTHUMG00000185288.2\"; havana_transcript \"OTTHUMT00000276578.1\";\n", + "chr22\tHAVANA\ttranscript\t16158798\t16192995\t.\t-\t.\tgene_id \"ENSG00000206195.6\"; transcript_id \"ENST00000383038.3\"; gene_type \"processed_transcript\"; gene_status \"NOVEL\"; gene_name \"AP000525.9\"; transcript_type \"processed_transcript\"; transcript_status \"KNOWN\"; transcript_name \"AP000525.9-004\"; level 2; havana_gene \"OTTHUMG00000185288.2\"; havana_transcript \"OTTHUMT00000276577.1\";\n", + "chr22\tHAVANA\ttranscript\t16158829\t16159470\t.\t-\t.\tgene_id \"ENSG00000206195.6\"; transcript_id \"ENST00000607933.1\"; gene_type \"processed_transcript\"; gene_status \"NOVEL\"; gene_name \"AP000525.9\"; transcript_type \"processed_transcript\"; transcript_status \"KNOWN\"; transcript_name \"AP000525.9-006\"; level 2; havana_gene \"OTTHUMG00000185288.2\"; havana_transcript \"OTTHUMT00000472240.1\";\n", + "--- Random 10 lines ---\n", + "chr22\tHAVANA\ttranscript\t16084249\t16084826\t.\t-\t.\tgene_id \"ENSG00000235265.1\"; transcript_id \"ENST00000413156.1\"; gene_type \"pseudogene\"; gene_status \"KNOWN\"; gene_name \"LA16c-4G1.5\"; transcript_type \"unprocessed_pseudogene\"; transcript_status \"KNOWN\"; transcript_name \"LA16c-4G1.5-001\"; level 2; ont \"PGO:0000005\"; havana_gene \"OTTHUMG00000140197.1\"; havana_transcript \"OTTHUMT00000276576.1\";\n", + "chr22\tHAVANA\ttranscript\t16100517\t16124973\t.\t-\t.\tgene_id \"ENSG00000223875.1\"; transcript_id \"ENST00000420638.1\"; gene_type \"pseudogene\"; gene_status \"KNOWN\"; gene_name \"NBEAP3\"; transcript_type \"unprocessed_pseudogene\"; transcript_status \"KNOWN\"; transcript_name \"NBEAP3-001\"; level 2; ont \"PGO:0000005\"; havana_gene \"OTTHUMG00000140196.1\"; havana_transcript \"OTTHUMT00000276575.1\";\n", + "chr22\tHAVANA\ttranscript\t16122720\t16123768\t.\t+\t.\tgene_id \"ENSG00000215270.3\"; transcript_id \"ENST00000398242.2\"; gene_type \"pseudogene\"; gene_status \"KNOWN\"; gene_name \"LA16c-60H5.7\"; transcript_type \"processed_pseudogene\"; transcript_status \"KNOWN\"; transcript_name \"LA16c-60H5.7-001\"; level 1; ont \"PGO:0000004\"; tag \"pseudo_consens\"; havana_gene \"OTTHUMG00000140200.1\"; havana_transcript \"OTTHUMT00000276581.1\";\n", + "chr22\tHAVANA\ttranscript\t16150255\t16193000\t.\t-\t.\tgene_id \"ENSG00000206195.6\"; transcript_id \"ENST00000437781.1\"; gene_type \"processed_transcript\"; gene_status \"NOVEL\"; gene_name \"AP000525.9\"; transcript_type \"lincRNA\"; transcript_status \"KNOWN\"; transcript_name \"AP000525.9-003\"; level 2; havana_gene \"OTTHUMG00000185288.2\"; havana_transcript \"OTTHUMT00000276579.1\";\n", + "chr22\tHAVANA\ttranscript\t16150529\t16193004\t.\t-\t.\tgene_id \"ENSG00000206195.6\"; transcript_id \"ENST00000413768.1\"; gene_type \"processed_transcript\"; gene_status \"NOVEL\"; gene_name \"AP000525.9\"; transcript_type \"lincRNA\"; transcript_status \"KNOWN\"; transcript_name \"AP000525.9-001\"; level 2; tag \"non_canonical_polymorphism\"; havana_gene \"OTTHUMG00000185288.2\"; havana_transcript \"OTTHUMT00000276578.1\";\n", + "chr22\tHAVANA\ttranscript\t16158798\t16192995\t.\t-\t.\tgene_id \"ENSG00000206195.6\"; transcript_id \"ENST00000383038.3\"; gene_type \"processed_transcript\"; gene_status \"NOVEL\"; gene_name \"AP000525.9\"; transcript_type \"processed_transcript\"; transcript_status \"KNOWN\"; transcript_name \"AP000525.9-004\"; level 2; havana_gene \"OTTHUMG00000185288.2\"; havana_transcript \"OTTHUMT00000276577.1\";\n", + "chr22\tHAVANA\ttranscript\t16158829\t16159470\t.\t-\t.\tgene_id \"ENSG00000206195.6\"; transcript_id \"ENST00000607933.1\"; gene_type \"processed_transcript\"; gene_status \"NOVEL\"; gene_name \"AP000525.9\"; transcript_type \"processed_transcript\"; transcript_status \"KNOWN\"; transcript_name \"AP000525.9-006\"; level 2; havana_gene \"OTTHUMG00000185288.2\"; havana_transcript \"OTTHUMT00000472240.1\";\n", + "chr22\tHAVANA\ttranscript\t16150776\t16151397\t.\t-\t.\tgene_id \"ENSG00000271672.1\"; transcript_id \"ENST00000456786.2\"; gene_type \"pseudogene\"; gene_status \"KNOWN\"; gene_name \"DUXAP8\"; transcript_type \"transcribed_processed_pseudogene\"; transcript_status \"KNOWN\"; transcript_name \"DUXAP8-001\"; level 1; ont \"PGO:0000004\"; ont \"PGO:0000019\"; tag \"pseudo_consens\"; havana_gene \"OTTHUMG00000140194.3\"; havana_transcript \"OTTHUMT00000276572.3\";\n", + "chr22\tHAVANA\ttranscript\t16162066\t16172700\t.\t+\t.\tgene_id \"ENSG00000232775.2\"; transcript_id \"ENST00000440946.1\"; gene_type \"pseudogene\"; gene_status \"KNOWN\"; gene_name \"AP000525.10\"; transcript_type \"processed_transcript\"; transcript_status \"KNOWN\"; transcript_name \"AP000525.10-002\"; level 2; tag \"basic\"; havana_gene \"OTTHUMG00000140198.3\"; havana_transcript \"OTTHUMT00000276785.1\";\n", + "chr22\tHAVANA\ttranscript\t16255355\t16256477\t.\t-\t.\tgene_id \"ENSG00000241838.2\"; transcript_id \"ENST00000417657.1\"; gene_type \"pseudogene\"; gene_status \"KNOWN\"; gene_name \"LA16c-3G11.7\"; transcript_type \"processed_pseudogene\"; transcript_status \"KNOWN\"; transcript_name \"LA16c-3G11.7-001\"; level 1; ont \"PGO:0000004\"; tag \"pseudo_consens\"; havana_gene \"OTTHUMG00000140315.1\"; havana_transcript \"OTTHUMT00000276919.1\";\n", + "--- Last 10 lines ---\n", + "chr22\tHAVANA\ttranscript\t51205934\t51222090\t.\t-\t.\tgene_id \"ENSG00000079974.13\"; transcript_id \"ENST00000395591.1\"; gene_type \"protein_coding\"; gene_status \"KNOWN\"; gene_name \"RABL2B\"; transcript_type \"protein_coding\"; transcript_status \"NOVEL\"; transcript_name \"RABL2B-003\"; level 2; tag \"basic\"; havana_gene \"OTTHUMG00000150156.3\"; havana_transcript \"OTTHUMT00000316608.1\";\n", + "chr22\tHAVANA\ttranscript\t51205934\t51222091\t.\t-\t.\tgene_id \"ENSG00000079974.13\"; transcript_id \"ENST00000395595.3\"; gene_type \"protein_coding\"; gene_status \"KNOWN\"; gene_name \"RABL2B\"; transcript_type \"protein_coding\"; transcript_status \"KNOWN\"; transcript_name \"RABL2B-006\"; level 2; tag \"basic\"; tag \"appris_candidate_longest\"; tag \"CCDS\"; ccdsid \"CCDS33683.1\"; havana_gene \"OTTHUMG00000150156.3\"; havana_transcript \"OTTHUMT00000316611.1\";\n", + "chr22\tHAVANA\ttranscript\t51205937\t51208930\t.\t-\t.\tgene_id \"ENSG00000079974.13\"; transcript_id \"ENST00000465063.1\"; gene_type \"protein_coding\"; gene_status \"KNOWN\"; gene_name \"RABL2B\"; transcript_type \"processed_transcript\"; transcript_status \"KNOWN\"; transcript_name \"RABL2B-010\"; level 2; tag \"basic\"; havana_gene \"OTTHUMG00000150156.3\"; havana_transcript \"OTTHUMT00000316615.1\";\n", + "chr22\tHAVANA\ttranscript\t51205958\t51222066\t.\t-\t.\tgene_id \"ENSG00000079974.13\"; transcript_id \"ENST00000436958.1\"; gene_type \"protein_coding\"; gene_status \"KNOWN\"; gene_name \"RABL2B\"; transcript_type \"nonsense_mediated_decay\"; transcript_status \"KNOWN\"; transcript_name \"RABL2B-002\"; level 2; havana_gene \"OTTHUMG00000150156.3\"; havana_transcript \"OTTHUMT00000316607.1\";\n", + "chr22\tHAVANA\ttranscript\t51207955\t51214261\t.\t-\t.\tgene_id \"ENSG00000079974.13\"; transcript_id \"ENST00000482308.1\"; gene_type \"protein_coding\"; gene_status \"KNOWN\"; gene_name \"RABL2B\"; transcript_type \"retained_intron\"; transcript_status \"KNOWN\"; transcript_name \"RABL2B-013\"; level 2; havana_gene \"OTTHUMG00000150156.3\"; havana_transcript \"OTTHUMT00000349056.1\";\n", + "chr22\tHAVANA\ttranscript\t51208210\t51221714\t.\t-\t.\tgene_id \"ENSG00000079974.13\"; transcript_id \"ENST00000464678.1\"; gene_type \"protein_coding\"; gene_status \"KNOWN\"; gene_name \"RABL2B\"; transcript_type \"retained_intron\"; transcript_status \"KNOWN\"; transcript_name \"RABL2B-012\"; level 2; havana_gene \"OTTHUMG00000150156.3\"; havana_transcript \"OTTHUMT00000349055.1\";\n", + "chr22\tHAVANA\ttranscript\t51209638\t51222058\t.\t-\t.\tgene_id \"ENSG00000079974.13\"; transcript_id \"ENST00000395590.1\"; gene_type \"protein_coding\"; gene_status \"KNOWN\"; gene_name \"RABL2B\"; transcript_type \"protein_coding\"; transcript_status \"PUTATIVE\"; transcript_name \"RABL2B-004\"; level 2; tag \"basic\"; havana_gene \"OTTHUMG00000150156.3\"; havana_transcript \"OTTHUMT00000316609.1\";\n", + "chr22\tHAVANA\ttranscript\t51214199\t51222028\t.\t-\t.\tgene_id \"ENSG00000079974.13\"; transcript_id \"ENST00000468451.1\"; gene_type \"protein_coding\"; gene_status \"KNOWN\"; gene_name \"RABL2B\"; transcript_type \"nonsense_mediated_decay\"; transcript_status \"KNOWN\"; transcript_name \"RABL2B-014\"; level 2; havana_gene \"OTTHUMG00000150156.3\"; havana_transcript \"OTTHUMT00000349057.1\";\n", + "chr22\tHAVANA\ttranscript\t51216088\t51222058\t.\t-\t.\tgene_id \"ENSG00000079974.13\"; transcript_id \"ENST00000464740.1\"; gene_type \"protein_coding\"; gene_status \"KNOWN\"; gene_name \"RABL2B\"; transcript_type \"retained_intron\"; transcript_status \"KNOWN\"; transcript_name \"RABL2B-015\"; level 2; havana_gene \"OTTHUMG00000150156.3\"; havana_transcript \"OTTHUMT00000349058.1\";\n", + "chr22\tHAVANA\ttranscript\t51220662\t51221473\t.\t-\t.\tgene_id \"ENSG00000079974.13\"; transcript_id \"ENST00000413505.1\"; gene_type \"protein_coding\"; gene_status \"KNOWN\"; gene_name \"RABL2B\"; transcript_type \"protein_coding\"; transcript_status \"KNOWN\"; transcript_name \"RABL2B-011\"; level 2; tag \"alternative_5_UTR\"; tag \"mRNA_end_NF\"; tag \"cds_end_NF\"; havana_gene \"OTTHUMG00000150156.3\"; havana_transcript \"OTTHUMT00000316616.2\";\n", + "\n" + ] + } + ], "source": [ "print(exercise2)" ] }, { "cell_type": "code", - "execution_count": null, + "execution_count": 16, "metadata": { "collapsed": true, "deletable": false, @@ -867,7 +959,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 17, "metadata": { "collapsed": false, "deletable": false, @@ -882,9 +974,10 @@ "outputs": [], "source": [ "%%bash --out exercise3\n", - "# YOUR CODE HERE\\n\n", - "\n", + "module load biotools\n", + "bedtools flank -i gencode.v19.annotation.chr22.transcript.gtf -g hg19.genome -l 2000 -r 0 -s > gencode.v19.annotation.chr22.transcript.promoter.gtf\n", "wc -l gencode.v19.annotation.chr22.transcript.promoter.gtf\n", + "\n", "echo '--- First 10 lines ---'\n", "head gencode.v19.annotation.chr22.transcript.promoter.gtf\n", "echo '--- Random 10 lines ---'\n", @@ -902,18 +995,60 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 18, "metadata": { "collapsed": false }, - "outputs": [], + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "4459 gencode.v19.annotation.chr22.transcript.promoter.gtf\n", + "--- First 10 lines ---\n", + "chr22\tHAVANA\ttranscript\t16060157\t16062156\t.\t+\t.\tgene_id \"ENSG00000233866.1\"; transcript_id \"ENST00000424770.1\"; gene_type \"lincRNA\"; gene_status \"KNOWN\"; gene_name \"LA16c-4G1.3\"; transcript_type \"lincRNA\"; transcript_status \"KNOWN\"; transcript_name \"LA16c-4G1.3-001\"; level 2; tag \"basic\"; havana_gene \"OTTHUMG00000140195.1\"; havana_transcript \"OTTHUMT00000276574.1\";\n", + "chr22\tHAVANA\ttranscript\t16076173\t16078172\t.\t-\t.\tgene_id \"ENSG00000229286.1\"; transcript_id \"ENST00000448070.1\"; gene_type \"pseudogene\"; gene_status \"KNOWN\"; gene_name \"LA16c-4G1.4\"; transcript_type \"unprocessed_pseudogene\"; transcript_status \"KNOWN\"; transcript_name \"LA16c-4G1.4-001\"; level 2; ont \"PGO:0000005\"; havana_gene \"OTTHUMG00000140193.1\"; havana_transcript \"OTTHUMT00000276571.1\";\n", + "chr22\tHAVANA\ttranscript\t16084827\t16086826\t.\t-\t.\tgene_id \"ENSG00000235265.1\"; transcript_id \"ENST00000413156.1\"; gene_type \"pseudogene\"; gene_status \"KNOWN\"; gene_name \"LA16c-4G1.5\"; transcript_type \"unprocessed_pseudogene\"; transcript_status \"KNOWN\"; transcript_name \"LA16c-4G1.5-001\"; level 2; ont \"PGO:0000005\"; havana_gene \"OTTHUMG00000140197.1\"; havana_transcript \"OTTHUMT00000276576.1\";\n", + "chr22\tHAVANA\ttranscript\t16124974\t16126973\t.\t-\t.\tgene_id \"ENSG00000223875.1\"; transcript_id \"ENST00000420638.1\"; gene_type \"pseudogene\"; gene_status \"KNOWN\"; gene_name \"NBEAP3\"; transcript_type \"unprocessed_pseudogene\"; transcript_status \"KNOWN\"; transcript_name \"NBEAP3-001\"; level 2; ont \"PGO:0000005\"; havana_gene \"OTTHUMG00000140196.1\"; havana_transcript \"OTTHUMT00000276575.1\";\n", + "chr22\tHAVANA\ttranscript\t16120720\t16122719\t.\t+\t.\tgene_id \"ENSG00000215270.3\"; transcript_id \"ENST00000398242.2\"; gene_type \"pseudogene\"; gene_status \"KNOWN\"; gene_name \"LA16c-60H5.7\"; transcript_type \"processed_pseudogene\"; transcript_status \"KNOWN\"; transcript_name \"LA16c-60H5.7-001\"; level 1; ont \"PGO:0000004\"; tag \"pseudo_consens\"; havana_gene \"OTTHUMG00000140200.1\"; havana_transcript \"OTTHUMT00000276581.1\";\n", + "chr22\tHAVANA\ttranscript\t16192972\t16194971\t.\t-\t.\tgene_id \"ENSG00000206195.6\"; transcript_id \"ENST00000447898.1\"; gene_type \"processed_transcript\"; gene_status \"NOVEL\"; gene_name \"AP000525.9\"; transcript_type \"lincRNA\"; transcript_status \"KNOWN\"; transcript_name \"AP000525.9-002\"; level 2; tag \"basic\"; havana_gene \"OTTHUMG00000185288.2\"; havana_transcript \"OTTHUMT00000276780.1\";\n", + "chr22\tHAVANA\ttranscript\t16193001\t16195000\t.\t-\t.\tgene_id \"ENSG00000206195.6\"; transcript_id \"ENST00000437781.1\"; gene_type \"processed_transcript\"; gene_status \"NOVEL\"; gene_name \"AP000525.9\"; transcript_type \"lincRNA\"; transcript_status \"KNOWN\"; transcript_name \"AP000525.9-003\"; level 2; havana_gene \"OTTHUMG00000185288.2\"; havana_transcript \"OTTHUMT00000276579.1\";\n", + "chr22\tHAVANA\ttranscript\t16193005\t16195004\t.\t-\t.\tgene_id \"ENSG00000206195.6\"; transcript_id \"ENST00000413768.1\"; gene_type \"processed_transcript\"; gene_status \"NOVEL\"; gene_name \"AP000525.9\"; transcript_type \"lincRNA\"; transcript_status \"KNOWN\"; transcript_name \"AP000525.9-001\"; level 2; tag \"non_canonical_polymorphism\"; havana_gene \"OTTHUMG00000185288.2\"; havana_transcript \"OTTHUMT00000276578.1\";\n", + "chr22\tHAVANA\ttranscript\t16192996\t16194995\t.\t-\t.\tgene_id \"ENSG00000206195.6\"; transcript_id \"ENST00000383038.3\"; gene_type \"processed_transcript\"; gene_status \"NOVEL\"; gene_name \"AP000525.9\"; transcript_type \"processed_transcript\"; transcript_status \"KNOWN\"; transcript_name \"AP000525.9-004\"; level 2; havana_gene \"OTTHUMG00000185288.2\"; havana_transcript \"OTTHUMT00000276577.1\";\n", + "chr22\tHAVANA\ttranscript\t16159471\t16161470\t.\t-\t.\tgene_id \"ENSG00000206195.6\"; transcript_id \"ENST00000607933.1\"; gene_type \"processed_transcript\"; gene_status \"NOVEL\"; gene_name \"AP000525.9\"; transcript_type \"processed_transcript\"; transcript_status \"KNOWN\"; transcript_name \"AP000525.9-006\"; level 2; havana_gene \"OTTHUMG00000185288.2\"; havana_transcript \"OTTHUMT00000472240.1\";\n", + "--- Random 10 lines ---\n", + "chr22\tHAVANA\ttranscript\t16084827\t16086826\t.\t-\t.\tgene_id \"ENSG00000235265.1\"; transcript_id \"ENST00000413156.1\"; gene_type \"pseudogene\"; gene_status \"KNOWN\"; gene_name \"LA16c-4G1.5\"; transcript_type \"unprocessed_pseudogene\"; transcript_status \"KNOWN\"; transcript_name \"LA16c-4G1.5-001\"; level 2; ont \"PGO:0000005\"; havana_gene \"OTTHUMG00000140197.1\"; havana_transcript \"OTTHUMT00000276576.1\";\n", + "chr22\tHAVANA\ttranscript\t16124974\t16126973\t.\t-\t.\tgene_id \"ENSG00000223875.1\"; transcript_id \"ENST00000420638.1\"; gene_type \"pseudogene\"; gene_status \"KNOWN\"; gene_name \"NBEAP3\"; transcript_type \"unprocessed_pseudogene\"; transcript_status \"KNOWN\"; transcript_name \"NBEAP3-001\"; level 2; ont \"PGO:0000005\"; havana_gene \"OTTHUMG00000140196.1\"; havana_transcript \"OTTHUMT00000276575.1\";\n", + "chr22\tHAVANA\ttranscript\t16120720\t16122719\t.\t+\t.\tgene_id \"ENSG00000215270.3\"; transcript_id \"ENST00000398242.2\"; gene_type \"pseudogene\"; gene_status \"KNOWN\"; gene_name \"LA16c-60H5.7\"; transcript_type \"processed_pseudogene\"; transcript_status \"KNOWN\"; transcript_name \"LA16c-60H5.7-001\"; level 1; ont \"PGO:0000004\"; tag \"pseudo_consens\"; havana_gene \"OTTHUMG00000140200.1\"; havana_transcript \"OTTHUMT00000276581.1\";\n", + "chr22\tHAVANA\ttranscript\t16193001\t16195000\t.\t-\t.\tgene_id \"ENSG00000206195.6\"; transcript_id \"ENST00000437781.1\"; gene_type \"processed_transcript\"; gene_status \"NOVEL\"; gene_name \"AP000525.9\"; transcript_type \"lincRNA\"; transcript_status \"KNOWN\"; transcript_name \"AP000525.9-003\"; level 2; havana_gene \"OTTHUMG00000185288.2\"; havana_transcript \"OTTHUMT00000276579.1\";\n", + "chr22\tHAVANA\ttranscript\t16193005\t16195004\t.\t-\t.\tgene_id \"ENSG00000206195.6\"; transcript_id \"ENST00000413768.1\"; gene_type \"processed_transcript\"; gene_status \"NOVEL\"; gene_name \"AP000525.9\"; transcript_type \"lincRNA\"; transcript_status \"KNOWN\"; transcript_name \"AP000525.9-001\"; level 2; tag \"non_canonical_polymorphism\"; havana_gene \"OTTHUMG00000185288.2\"; havana_transcript \"OTTHUMT00000276578.1\";\n", + "chr22\tHAVANA\ttranscript\t16192996\t16194995\t.\t-\t.\tgene_id \"ENSG00000206195.6\"; transcript_id \"ENST00000383038.3\"; gene_type \"processed_transcript\"; gene_status \"NOVEL\"; gene_name \"AP000525.9\"; transcript_type \"processed_transcript\"; transcript_status \"KNOWN\"; transcript_name \"AP000525.9-004\"; level 2; havana_gene \"OTTHUMG00000185288.2\"; havana_transcript \"OTTHUMT00000276577.1\";\n", + "chr22\tHAVANA\ttranscript\t16159471\t16161470\t.\t-\t.\tgene_id \"ENSG00000206195.6\"; transcript_id \"ENST00000607933.1\"; gene_type \"processed_transcript\"; gene_status \"NOVEL\"; gene_name \"AP000525.9\"; transcript_type \"processed_transcript\"; transcript_status \"KNOWN\"; transcript_name \"AP000525.9-006\"; level 2; havana_gene \"OTTHUMG00000185288.2\"; havana_transcript \"OTTHUMT00000472240.1\";\n", + "chr22\tHAVANA\ttranscript\t16151398\t16153397\t.\t-\t.\tgene_id \"ENSG00000271672.1\"; transcript_id \"ENST00000456786.2\"; gene_type \"pseudogene\"; gene_status \"KNOWN\"; gene_name \"DUXAP8\"; transcript_type \"transcribed_processed_pseudogene\"; transcript_status \"KNOWN\"; transcript_name \"DUXAP8-001\"; level 1; ont \"PGO:0000004\"; ont \"PGO:0000019\"; tag \"pseudo_consens\"; havana_gene \"OTTHUMG00000140194.3\"; havana_transcript \"OTTHUMT00000276572.3\";\n", + "chr22\tHAVANA\ttranscript\t16160066\t16162065\t.\t+\t.\tgene_id \"ENSG00000232775.2\"; transcript_id \"ENST00000440946.1\"; gene_type \"pseudogene\"; gene_status \"KNOWN\"; gene_name \"AP000525.10\"; transcript_type \"processed_transcript\"; transcript_status \"KNOWN\"; transcript_name \"AP000525.10-002\"; level 2; tag \"basic\"; havana_gene \"OTTHUMG00000140198.3\"; havana_transcript \"OTTHUMT00000276785.1\";\n", + "chr22\tHAVANA\ttranscript\t16256478\t16258477\t.\t-\t.\tgene_id \"ENSG00000241838.2\"; transcript_id \"ENST00000417657.1\"; gene_type \"pseudogene\"; gene_status \"KNOWN\"; gene_name \"LA16c-3G11.7\"; transcript_type \"processed_pseudogene\"; transcript_status \"KNOWN\"; transcript_name \"LA16c-3G11.7-001\"; level 1; ont \"PGO:0000004\"; tag \"pseudo_consens\"; havana_gene \"OTTHUMG00000140315.1\"; havana_transcript \"OTTHUMT00000276919.1\";\n", + "--- Last 10 lines ---\n", + "chr22\tHAVANA\ttranscript\t51222091\t51224090\t.\t-\t.\tgene_id \"ENSG00000079974.13\"; transcript_id \"ENST00000395591.1\"; gene_type \"protein_coding\"; gene_status \"KNOWN\"; gene_name \"RABL2B\"; transcript_type \"protein_coding\"; transcript_status \"NOVEL\"; transcript_name \"RABL2B-003\"; level 2; tag \"basic\"; havana_gene \"OTTHUMG00000150156.3\"; havana_transcript \"OTTHUMT00000316608.1\";\n", + "chr22\tHAVANA\ttranscript\t51222092\t51224091\t.\t-\t.\tgene_id \"ENSG00000079974.13\"; transcript_id \"ENST00000395595.3\"; gene_type \"protein_coding\"; gene_status \"KNOWN\"; gene_name \"RABL2B\"; transcript_type \"protein_coding\"; transcript_status \"KNOWN\"; transcript_name \"RABL2B-006\"; level 2; tag \"basic\"; tag \"appris_candidate_longest\"; tag \"CCDS\"; ccdsid \"CCDS33683.1\"; havana_gene \"OTTHUMG00000150156.3\"; havana_transcript \"OTTHUMT00000316611.1\";\n", + "chr22\tHAVANA\ttranscript\t51208931\t51210930\t.\t-\t.\tgene_id \"ENSG00000079974.13\"; transcript_id \"ENST00000465063.1\"; gene_type \"protein_coding\"; gene_status \"KNOWN\"; gene_name \"RABL2B\"; transcript_type \"processed_transcript\"; transcript_status \"KNOWN\"; transcript_name \"RABL2B-010\"; level 2; tag \"basic\"; havana_gene \"OTTHUMG00000150156.3\"; havana_transcript \"OTTHUMT00000316615.1\";\n", + "chr22\tHAVANA\ttranscript\t51222067\t51224066\t.\t-\t.\tgene_id \"ENSG00000079974.13\"; transcript_id \"ENST00000436958.1\"; gene_type \"protein_coding\"; gene_status \"KNOWN\"; gene_name \"RABL2B\"; transcript_type \"nonsense_mediated_decay\"; transcript_status \"KNOWN\"; transcript_name \"RABL2B-002\"; level 2; havana_gene \"OTTHUMG00000150156.3\"; havana_transcript \"OTTHUMT00000316607.1\";\n", + "chr22\tHAVANA\ttranscript\t51214262\t51216261\t.\t-\t.\tgene_id \"ENSG00000079974.13\"; transcript_id \"ENST00000482308.1\"; gene_type \"protein_coding\"; gene_status \"KNOWN\"; gene_name \"RABL2B\"; transcript_type \"retained_intron\"; transcript_status \"KNOWN\"; transcript_name \"RABL2B-013\"; level 2; havana_gene \"OTTHUMG00000150156.3\"; havana_transcript \"OTTHUMT00000349056.1\";\n", + "chr22\tHAVANA\ttranscript\t51221715\t51223714\t.\t-\t.\tgene_id \"ENSG00000079974.13\"; transcript_id \"ENST00000464678.1\"; gene_type \"protein_coding\"; gene_status \"KNOWN\"; gene_name \"RABL2B\"; transcript_type \"retained_intron\"; transcript_status \"KNOWN\"; transcript_name \"RABL2B-012\"; level 2; havana_gene \"OTTHUMG00000150156.3\"; havana_transcript \"OTTHUMT00000349055.1\";\n", + "chr22\tHAVANA\ttranscript\t51222059\t51224058\t.\t-\t.\tgene_id \"ENSG00000079974.13\"; transcript_id \"ENST00000395590.1\"; gene_type \"protein_coding\"; gene_status \"KNOWN\"; gene_name \"RABL2B\"; transcript_type \"protein_coding\"; transcript_status \"PUTATIVE\"; transcript_name \"RABL2B-004\"; level 2; tag \"basic\"; havana_gene \"OTTHUMG00000150156.3\"; havana_transcript \"OTTHUMT00000316609.1\";\n", + "chr22\tHAVANA\ttranscript\t51222029\t51224028\t.\t-\t.\tgene_id \"ENSG00000079974.13\"; transcript_id \"ENST00000468451.1\"; gene_type \"protein_coding\"; gene_status \"KNOWN\"; gene_name \"RABL2B\"; transcript_type \"nonsense_mediated_decay\"; transcript_status \"KNOWN\"; transcript_name \"RABL2B-014\"; level 2; havana_gene \"OTTHUMG00000150156.3\"; havana_transcript \"OTTHUMT00000349057.1\";\n", + "chr22\tHAVANA\ttranscript\t51222059\t51224058\t.\t-\t.\tgene_id \"ENSG00000079974.13\"; transcript_id \"ENST00000464740.1\"; gene_type \"protein_coding\"; gene_status \"KNOWN\"; gene_name \"RABL2B\"; transcript_type \"retained_intron\"; transcript_status \"KNOWN\"; transcript_name \"RABL2B-015\"; level 2; havana_gene \"OTTHUMG00000150156.3\"; havana_transcript \"OTTHUMT00000349058.1\";\n", + "chr22\tHAVANA\ttranscript\t51221474\t51223473\t.\t-\t.\tgene_id \"ENSG00000079974.13\"; transcript_id \"ENST00000413505.1\"; gene_type \"protein_coding\"; gene_status \"KNOWN\"; gene_name \"RABL2B\"; transcript_type \"protein_coding\"; transcript_status \"KNOWN\"; transcript_name \"RABL2B-011\"; level 2; tag \"alternative_5_UTR\"; tag \"mRNA_end_NF\"; tag \"cds_end_NF\"; havana_gene \"OTTHUMG00000150156.3\"; havana_transcript \"OTTHUMT00000316616.2\";\n", + "\n" + ] + } + ], "source": [ "print(exercise3)" ] }, { "cell_type": "code", - "execution_count": null, + "execution_count": 19, "metadata": { "collapsed": false, "deletable": false, @@ -996,7 +1131,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 20, "metadata": { "collapsed": false, "deletable": false, @@ -1012,7 +1147,9 @@ "outputs": [], "source": [ "%%bash --out exercise4\n", - "# YOUR CODE HERE\\n\n", + "module load biotools\n", + "bedtools intersect -a gencode.v19.annotation.chr22.transcript.promoter.gtf \\\n", + " -b tf.nfkb.bed > gencode.v19.annotation.chr22.transcript.promoter.nfkb.gtf\n", "\n", "wc -l gencode.v19.annotation.chr22.transcript.promoter.nfkb.gtf\n", "echo '--- First 10 lines ---'\n", @@ -1041,19 +1178,61 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 21, "metadata": { "collapsed": false, "scrolled": false }, - "outputs": [], + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "1221 gencode.v19.annotation.chr22.transcript.promoter.nfkb.gtf\n", + "--- First 10 lines ---\n", + "chr22\tHAVANA\ttranscript\t17565763\t17565843\t.\t+\t.\tgene_id \"ENSG00000177663.9\"; transcript_id \"ENST00000477874.1\"; gene_type \"protein_coding\"; gene_status \"KNOWN\"; gene_name \"IL17RA\"; transcript_type \"processed_transcript\"; transcript_status \"PUTATIVE\"; transcript_name \"IL17RA-004\"; level 1; tag \"basic\"; tag \"exp_conf\"; havana_gene \"OTTHUMG00000150026.1\"; havana_transcript \"OTTHUMT00000315823.1\";\n", + "chr22\tHAVANA\ttranscript\t17565763\t17565848\t.\t+\t.\tgene_id \"ENSG00000177663.9\"; transcript_id \"ENST00000319363.6\"; gene_type \"protein_coding\"; gene_status \"KNOWN\"; gene_name \"IL17RA\"; transcript_type \"protein_coding\"; transcript_status \"KNOWN\"; transcript_name \"IL17RA-001\"; level 2; tag \"basic\"; tag \"appris_principal\"; tag \"CCDS\"; ccdsid \"CCDS13739.1\"; havana_gene \"OTTHUMG00000150026.1\"; havana_transcript \"OTTHUMT00000315820.1\";\n", + "chr22\tHAVANA\ttranscript\t17565763\t17565946\t.\t+\t.\tgene_id \"ENSG00000177663.9\"; transcript_id \"ENST00000459971.1\"; gene_type \"protein_coding\"; gene_status \"KNOWN\"; gene_name \"IL17RA\"; transcript_type \"retained_intron\"; transcript_status \"KNOWN\"; transcript_name \"IL17RA-003\"; level 2; havana_gene \"OTTHUMG00000150026.1\"; havana_transcript \"OTTHUMT00000315822.1\";\n", + "chr22\tHAVANA\ttranscript\t17700267\t17700502\t.\t-\t.\tgene_id \"ENSG00000093072.11\"; transcript_id \"ENST00000399837.2\"; gene_type \"protein_coding\"; gene_status \"KNOWN\"; gene_name \"CECR1\"; transcript_type \"protein_coding\"; transcript_status \"KNOWN\"; transcript_name \"CECR1-201\"; level 2; tag \"basic\"; tag \"appris_principal\"; tag \"CCDS\"; ccdsid \"CCDS13742.1\"; havana_gene \"OTTHUMG00000030726.8\"; havana_transcript \"OTTHUMT00000316079.1\";\n", + "chr22\tHAVANA\ttranscript\t17701962\t17702266\t.\t-\t.\tgene_id \"ENSG00000093072.11\"; transcript_id \"ENST00000399837.2\"; gene_type \"protein_coding\"; gene_status \"KNOWN\"; gene_name \"CECR1\"; transcript_type \"protein_coding\"; transcript_status \"KNOWN\"; transcript_name \"CECR1-201\"; level 2; tag \"basic\"; tag \"appris_principal\"; tag \"CCDS\"; ccdsid \"CCDS13742.1\"; havana_gene \"OTTHUMG00000030726.8\"; havana_transcript \"OTTHUMT00000316079.1\";\n", + "chr22\tHAVANA\ttranscript\t17700326\t17700502\t.\t-\t.\tgene_id \"ENSG00000093072.11\"; transcript_id \"ENST00000543038.1\"; gene_type \"protein_coding\"; gene_status \"KNOWN\"; gene_name \"CECR1\"; transcript_type \"protein_coding\"; transcript_status \"KNOWN\"; transcript_name \"CECR1-001\"; level 2; tag \"alternative_5_UTR\"; tag \"mRNA_end_NF\"; tag \"cds_end_NF\"; havana_gene \"OTTHUMG00000030726.8\"; havana_transcript \"OTTHUMT00000075614.5\";\n", + "chr22\tHAVANA\ttranscript\t17701962\t17702278\t.\t-\t.\tgene_id \"ENSG00000093072.11\"; transcript_id \"ENST00000543038.1\"; gene_type \"protein_coding\"; gene_status \"KNOWN\"; gene_name \"CECR1\"; transcript_type \"protein_coding\"; transcript_status \"KNOWN\"; transcript_name \"CECR1-001\"; level 2; tag \"alternative_5_UTR\"; tag \"mRNA_end_NF\"; tag \"cds_end_NF\"; havana_gene \"OTTHUMG00000030726.8\"; havana_transcript \"OTTHUMT00000075614.5\";\n", + "chr22\tHAVANA\ttranscript\t18111762\t18112038\t.\t-\t.\tgene_id \"ENSG00000131100.8\"; transcript_id \"ENST00000253413.5\"; gene_type \"protein_coding\"; gene_status \"KNOWN\"; gene_name \"ATP6V1E1\"; transcript_type \"protein_coding\"; transcript_status \"KNOWN\"; transcript_name \"ATP6V1E1-001\"; level 2; tag \"basic\"; tag \"appris_principal\"; tag \"CCDS\"; ccdsid \"CCDS13745.1\"; havana_gene \"OTTHUMG00000059320.4\"; havana_transcript \"OTTHUMT00000131790.3\";\n", + "chr22\tHAVANA\ttranscript\t18111762\t18112038\t.\t-\t.\tgene_id \"ENSG00000131100.8\"; transcript_id \"ENST00000399796.2\"; gene_type \"protein_coding\"; gene_status \"KNOWN\"; gene_name \"ATP6V1E1\"; transcript_type \"protein_coding\"; transcript_status \"KNOWN\"; transcript_name \"ATP6V1E1-006\"; level 2; tag \"basic\"; tag \"CCDS\"; ccdsid \"CCDS42978.1\"; havana_gene \"OTTHUMG00000059320.4\"; havana_transcript \"OTTHUMT00000353464.1\";\n", + "chr22\tHAVANA\ttranscript\t18111762\t18112038\t.\t-\t.\tgene_id \"ENSG00000131100.8\"; transcript_id \"ENST00000399798.2\"; gene_type \"protein_coding\"; gene_status \"KNOWN\"; gene_name \"ATP6V1E1\"; transcript_type \"protein_coding\"; transcript_status \"KNOWN\"; transcript_name \"ATP6V1E1-005\"; level 2; tag \"basic\"; tag \"CCDS\"; ccdsid \"CCDS42977.1\"; havana_gene \"OTTHUMG00000059320.4\"; havana_transcript \"OTTHUMT00000353463.1\";\n", + "--- Random 10 lines ---\n", + "chr22\tHAVANA\ttranscript\t17565763\t17565848\t.\t+\t.\tgene_id \"ENSG00000177663.9\"; transcript_id \"ENST00000319363.6\"; gene_type \"protein_coding\"; gene_status \"KNOWN\"; gene_name \"IL17RA\"; transcript_type \"protein_coding\"; transcript_status \"KNOWN\"; transcript_name \"IL17RA-001\"; level 2; tag \"basic\"; tag \"appris_principal\"; tag \"CCDS\"; ccdsid \"CCDS13739.1\"; havana_gene \"OTTHUMG00000150026.1\"; havana_transcript \"OTTHUMT00000315820.1\";\n", + "chr22\tHAVANA\ttranscript\t17565763\t17565946\t.\t+\t.\tgene_id \"ENSG00000177663.9\"; transcript_id \"ENST00000459971.1\"; gene_type \"protein_coding\"; gene_status \"KNOWN\"; gene_name \"IL17RA\"; transcript_type \"retained_intron\"; transcript_status \"KNOWN\"; transcript_name \"IL17RA-003\"; level 2; havana_gene \"OTTHUMG00000150026.1\"; havana_transcript \"OTTHUMT00000315822.1\";\n", + "chr22\tHAVANA\ttranscript\t17700267\t17700502\t.\t-\t.\tgene_id \"ENSG00000093072.11\"; transcript_id \"ENST00000399837.2\"; gene_type \"protein_coding\"; gene_status \"KNOWN\"; gene_name \"CECR1\"; transcript_type \"protein_coding\"; transcript_status \"KNOWN\"; transcript_name \"CECR1-201\"; level 2; tag \"basic\"; tag \"appris_principal\"; tag \"CCDS\"; ccdsid \"CCDS13742.1\"; havana_gene \"OTTHUMG00000030726.8\"; havana_transcript \"OTTHUMT00000316079.1\";\n", + "chr22\tHAVANA\ttranscript\t18111762\t18112038\t.\t-\t.\tgene_id \"ENSG00000131100.8\"; transcript_id \"ENST00000399798.2\"; gene_type \"protein_coding\"; gene_status \"KNOWN\"; gene_name \"ATP6V1E1\"; transcript_type \"protein_coding\"; transcript_status \"KNOWN\"; transcript_name \"ATP6V1E1-005\"; level 2; tag \"basic\"; tag \"CCDS\"; ccdsid \"CCDS42977.1\"; havana_gene \"OTTHUMG00000059320.4\"; havana_transcript \"OTTHUMT00000353463.1\";\n", + "chr22\tHAVANA\ttranscript\t18121203\t18121355\t.\t+\t.\tgene_id \"ENSG00000099968.13\"; transcript_id \"ENST00000317582.5\"; gene_type \"protein_coding\"; gene_status \"KNOWN\"; gene_name \"BCL2L13\"; transcript_type \"protein_coding\"; transcript_status \"KNOWN\"; transcript_name \"BCL2L13-001\"; level 2; tag \"basic\"; tag \"appris_principal\"; tag \"CCDS\"; ccdsid \"CCDS13746.1\"; havana_gene \"OTTHUMG00000150088.3\"; havana_transcript \"OTTHUMT00000316184.1\";\n", + "chr22\tHAVANA\ttranscript\t18121203\t18121506\t.\t+\t.\tgene_id \"ENSG00000099968.13\"; transcript_id \"ENST00000498133.1\"; gene_type \"protein_coding\"; gene_status \"KNOWN\"; gene_name \"BCL2L13\"; transcript_type \"nonsense_mediated_decay\"; transcript_status \"KNOWN\"; transcript_name \"BCL2L13-003\"; level 2; havana_gene \"OTTHUMG00000150088.3\"; havana_transcript \"OTTHUMT00000316186.2\";\n", + "chr22\tENSEMBL\ttranscript\t18121203\t18121522\t.\t+\t.\tgene_id \"ENSG00000099968.13\"; transcript_id \"ENST00000538149.1\"; gene_type \"protein_coding\"; gene_status \"KNOWN\"; gene_name \"BCL2L13\"; transcript_type \"protein_coding\"; transcript_status \"KNOWN\"; transcript_name \"BCL2L13-203\"; level 3; tag \"basic\"; havana_gene \"OTTHUMG00000150088.3\";\n", + "chr22\tENSEMBL\ttranscript\t18121203\t18121529\t.\t+\t.\tgene_id \"ENSG00000099968.13\"; transcript_id \"ENST00000337612.5\"; gene_type \"protein_coding\"; gene_status \"KNOWN\"; gene_name \"BCL2L13\"; transcript_type \"protein_coding\"; transcript_status \"KNOWN\"; transcript_name \"BCL2L13-201\"; level 3; tag \"basic\"; tag \"CCDS\"; ccdsid \"CCDS59448.1\"; havana_gene \"OTTHUMG00000150088.3\";\n", + "chr22\tHAVANA\ttranscript\t18121203\t18121537\t.\t+\t.\tgene_id \"ENSG00000099968.13\"; transcript_id \"ENST00000493680.1\"; gene_type \"protein_coding\"; gene_status \"KNOWN\"; gene_name \"BCL2L13\"; transcript_type \"protein_coding\"; transcript_status \"KNOWN\"; transcript_name \"BCL2L13-004\"; level 2; tag \"alternative_5_UTR\"; tag \"basic\"; havana_gene \"OTTHUMG00000150088.3\"; havana_transcript \"OTTHUMT00000316187.2\";\n", + "chr22\tHAVANA\ttranscript\t18225198\t18225524\t.\t-\t.\tgene_id \"ENSG00000015475.14\"; transcript_id \"ENST00000494097.1\"; gene_type \"protein_coding\"; gene_status \"KNOWN\"; gene_name \"BID\"; transcript_type \"retained_intron\"; transcript_status \"KNOWN\"; transcript_name \"BID-005\"; level 2; havana_gene \"OTTHUMG00000150087.4\"; havana_transcript \"OTTHUMT00000316182.1\";\n", + "--- Last 10 lines ---\n", + "chr22\tHAVANA\ttranscript\t51021250\t51021316\t.\t-\t.\tgene_id \"ENSG00000100288.15\"; transcript_id \"ENST00000479003.1\"; gene_type \"protein_coding\"; gene_status \"KNOWN\"; gene_name \"CHKB\"; transcript_type \"retained_intron\"; transcript_status \"KNOWN\"; transcript_name \"CHKB-004\"; level 2; havana_gene \"OTTHUMG00000150275.5\"; havana_transcript \"OTTHUMT00000317270.1\";\n", + "chr22\tHAVANA\ttranscript\t51021478\t51021754\t.\t-\t.\tgene_id \"ENSG00000100288.15\"; transcript_id \"ENST00000479003.1\"; gene_type \"protein_coding\"; gene_status \"KNOWN\"; gene_name \"CHKB\"; transcript_type \"retained_intron\"; transcript_status \"KNOWN\"; transcript_name \"CHKB-004\"; level 2; havana_gene \"OTTHUMG00000150275.5\"; havana_transcript \"OTTHUMT00000317270.1\";\n", + "chr22\tHAVANA\ttranscript\t51021040\t51021316\t.\t-\t.\tgene_id \"ENSG00000100288.15\"; transcript_id \"ENST00000468532.1\"; gene_type \"protein_coding\"; gene_status \"KNOWN\"; gene_name \"CHKB\"; transcript_type \"retained_intron\"; transcript_status \"KNOWN\"; transcript_name \"CHKB-007\"; level 2; havana_gene \"OTTHUMG00000150275.5\"; havana_transcript \"OTTHUMT00000317603.1\";\n", + "chr22\tHAVANA\ttranscript\t51021478\t51021754\t.\t-\t.\tgene_id \"ENSG00000100288.15\"; transcript_id \"ENST00000468532.1\"; gene_type \"protein_coding\"; gene_status \"KNOWN\"; gene_name \"CHKB\"; transcript_type \"retained_intron\"; transcript_status \"KNOWN\"; transcript_name \"CHKB-007\"; level 2; havana_gene \"OTTHUMG00000150275.5\"; havana_transcript \"OTTHUMT00000317603.1\";\n", + "chr22\tHAVANA\ttranscript\t51021040\t51021209\t.\t-\t.\tgene_id \"ENSG00000100288.15\"; transcript_id \"ENST00000489453.1\"; gene_type \"protein_coding\"; gene_status \"KNOWN\"; gene_name \"CHKB\"; transcript_type \"retained_intron\"; transcript_status \"KNOWN\"; transcript_name \"CHKB-009\"; level 2; havana_gene \"OTTHUMG00000150275.5\"; havana_transcript \"OTTHUMT00000317605.1\";\n", + "chr22\tHAVANA\ttranscript\t51021284\t51021316\t.\t-\t.\tgene_id \"ENSG00000100288.15\"; transcript_id \"ENST00000476289.1\"; gene_type \"protein_coding\"; gene_status \"KNOWN\"; gene_name \"CHKB\"; transcript_type \"retained_intron\"; transcript_status \"KNOWN\"; transcript_name \"CHKB-006\"; level 2; havana_gene \"OTTHUMG00000150275.5\"; havana_transcript \"OTTHUMT00000317602.2\";\n", + "chr22\tHAVANA\ttranscript\t51021478\t51021754\t.\t-\t.\tgene_id \"ENSG00000100288.15\"; transcript_id \"ENST00000476289.1\"; gene_type \"protein_coding\"; gene_status \"KNOWN\"; gene_name \"CHKB\"; transcript_type \"retained_intron\"; transcript_status \"KNOWN\"; transcript_name \"CHKB-006\"; level 2; havana_gene \"OTTHUMG00000150275.5\"; havana_transcript \"OTTHUMT00000317602.2\";\n", + "chr22\tHAVANA\ttranscript\t51021040\t51021316\t.\t-\t.\tgene_id \"ENSG00000100288.15\"; transcript_id \"ENST00000465842.1\"; gene_type \"protein_coding\"; gene_status \"KNOWN\"; gene_name \"CHKB\"; transcript_type \"retained_intron\"; transcript_status \"KNOWN\"; transcript_name \"CHKB-008\"; level 2; havana_gene \"OTTHUMG00000150275.5\"; havana_transcript \"OTTHUMT00000317604.1\";\n", + "chr22\tHAVANA\ttranscript\t51021478\t51021754\t.\t-\t.\tgene_id \"ENSG00000100288.15\"; transcript_id \"ENST00000465842.1\"; gene_type \"protein_coding\"; gene_status \"KNOWN\"; gene_name \"CHKB\"; transcript_type \"retained_intron\"; transcript_status \"KNOWN\"; transcript_name \"CHKB-008\"; level 2; havana_gene \"OTTHUMG00000150275.5\"; havana_transcript \"OTTHUMT00000317604.1\";\n", + "chr22\tHAVANA\ttranscript\t51021040\t51021316\t.\t+\t.\tgene_id \"ENSG00000205559.3\"; transcript_id \"ENST00000380711.3\"; gene_type \"antisense\"; gene_status \"NOVEL\"; gene_name \"CHKB-AS1\"; transcript_type \"antisense\"; transcript_status \"KNOWN\"; transcript_name \"CHKB-AS1-001\"; level 1; tag \"basic\"; tag \"exp_conf\"; havana_gene \"OTTHUMG00000150208.1\"; havana_transcript \"OTTHUMT00000316839.1\";\n", + "\n" + ] + } + ], "source": [ "print(exercise4)" ] }, { "cell_type": "code", - "execution_count": null, + "execution_count": 22, "metadata": { "collapsed": false, "deletable": false, @@ -1131,7 +1310,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 23, "metadata": { "collapsed": false, "deletable": false, @@ -1147,8 +1326,9 @@ "source": [ "%%bash --out exercise5\n", "\n", - "# YOUR CODE HERE\\n\n", - "\n", + "module load biotools\n", + "touch gencode.v19.annotation.chr22.transcript.promoter.nfkb.fasta\n", + "bedtools getfasta -s -fi GRCh37.p13.chr22.fa -bed gencode.v19.annotation.chr22.transcript.promoter.nfkb.gtf -fo gencode.v19.annotation.chr22.transcript.promoter.nfkb.fasta\n", "\n", "wc -l gencode.v19.annotation.chr22.transcript.promoter.nfkb.fasta\n", "echo '--- First 10 lines ---'\n", @@ -1177,18 +1357,60 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 24, "metadata": { "collapsed": false }, - "outputs": [], + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "2442 gencode.v19.annotation.chr22.transcript.promoter.nfkb.fasta\n", + "--- First 10 lines ---\n", + ">chr22:17565762-17565843(+)\n", + "GCAAGGAGGAACGGGGGGAGGGCCCTGTCTCACCCTAAACCCCTCCCCGTCCCAGACTAAACTCCTCCCCTCGGCCCGGCC\n", + ">chr22:17565762-17565848(+)\n", + "GCAAGGAGGAACGGGGGGAGGGCCCTGTCTCACCCTAAACCCCTCCCCGTCCCAGACTAAACTCCTCCCCTCGGCCCGGCCCGCCC\n", + ">chr22:17565762-17565946(+)\n", + "GCAAGGAGGAACGGGGGGAGGGCCCTGTCTCACCCTAAACCCCTCCCCGTCCCAGACTAAACTCCTCCCCTCGGCCCGGCCCGCCCCTGGGCCCGGGCTGGAAGCCGGAAGCGAGCAAAGTGGAGCCGACTCGAACTCCACCGCGGAAAAGAAAGCCTCAGAACGTTCGTTCGCTGCGTCCCCA\n", + ">chr22:17700266-17700502(-)\n", + "TGAACATGCGCACAAGCCCCCCACATCAAACTCAGATGCACACAGCAAGCATGCATGTAAGCCACACACTTGCCACTCTGGCTGCCTCAGCACTGCAGAGCCCCTCTCCCCGGCCTCTAGTTGGATCCCTGGTGCACACTGGAGGGAAATAAAACCTACCCCAACAGGAAGTGAAACAGTTGGTGAGCTTTTCCGGTGCTCTGCACAGATGCTGGGGCGCTGAGCAAACAGCCCTC\n", + ">chr22:17701961-17702266(-)\n", + "AACCAACATGGCACAGGTATACCTATGTATCAAACCTGCACATTGTGCACATGTACCCTAGAACTTAAAGTATAAAAAAAACCCACAAAAAACCCTTCACATGATTTACTTTCAGAATTGGTGGTTTCCCTTTGTGCGGCGCTGGAATCAATCTTGTTTCTCCTTATTACTTGCGGTGCATTCTGCTTCCTCTAACTTTCAAAAAATTAGTGTTAAACTCTTTTTTTTTTTTTTGAGACAAAATCTCACTCTGTCATCCAGACTGGAGTGCAATGGTGCAATCTCAGCTCACTGCAACCTCCACC\n", + "--- Random 10 lines ---\n", + "GCAAGGAGGAACGGGGGGAGGGCCCTGTCTCACCCTAAACCCCTCCCCGTCCCAGACTAAACTCCTCCCCTCGGCCCGGCC\n", + ">chr22:17565762-17565848(+)\n", + "GCAAGGAGGAACGGGGGGAGGGCCCTGTCTCACCCTAAACCCCTCCCCGTCCCAGACTAAACTCCTCCCCTCGGCCCGGCCCGCCC\n", + "AACCAACATGGCACAGGTATACCTATGTATCAAACCTGCACATTGTGCACATGTACCCTAGAACTTAAAGTATAAAAAAAACCCACAAAAAACCCTTCACATGATTTACTTTCAGAATTGGTGGTTTCCCTTTGTGCGGCGCTGGAATCAATCTTGTTTCTCCTTATTACTTGCGGTGCATTCTGCTTCCTCTAACTTTCAAAAAATTAGTGTTAAACTCTTTTTTTTTTTTTTGAGACAAAATCTCACTCTGTCATCCAGACTGGAGTGCAATGGTGCAATCTCAGCTCACTGCAACCTCCACC\n", + "ATGGGTGCAGCAAACCAACATGGCACAGGTATACCTATGTATCAAACCTGCACATTGTGCACATGTACCCTAGAACTTAAAGTATAAAAAAAACCCACAAAAAACCCTTCACATGATTTACTTTCAGAATTGGTGGTTTCCCTTTGTGCGGCGCTGGAATCAATCTTGTTTCTCCTTATTACTTGCGGTGCATTCTGCTTCCTCTAACTTTCAAAAAATTAGTGTTAAACTCTTTTTTTTTTTTTTGAGACAAAATCTCACTCTGTCATCCAGACTGGAGTGCAATGGTGCAATCTCAGCTCACTGCAACCTCCACC\n", + ">chr22:18111761-18112038(-)\n", + "ACACTTTATTCAGGTAATCAAGGTTGACATGAATAGTCAGAAATCATGTATCCCCCTTTTTTTTTTCTTTTGGTAGAGACGGGGTTCCTCTATGTTGTCCAGCCTGGTCTCGAACTTGAGGTCAAGCGATACACCCGCCTTGGTCTCCCAAAGTCTCCGGATTGCAGGCGTGAGCCACCACGCCCGGCCAACAATCATGTACCCCTAAGCCCATAACCCTGTGTAATTATGCGAAAAATTCCAATAAAGGCACATTCTCCAATATACCTAACCAGTA\n", + ">chr22:18111761-18112038(-)\n", + "ACACTTTATTCAGGTAATCAAGGTTGACATGAATAGTCAGAAATCATGTATCCCCCTTTTTTTTTTCTTTTGGTAGAGACGGGGTTCCTCTATGTTGTCCAGCCTGGTCTCGAACTTGAGGTCAAGCGATACACCCGCCTTGGTCTCCCAAAGTCTCCGGATTGCAGGCGTGAGCCACCACGCCCGGCCAACAATCATGTACCCCTAAGCCCATAACCCTGTGTAATTATGCGAAAAATTCCAATAAAGGCACATTCTCCAATATACCTAACCAGTA\n", + "ACACTTTATTCAGGTAATCAAGGTTGACATGAATAGTCAGAAATCATGTATCCCCCTTTTTTTTTTCTTTTGGTAGAGACGGGGTTCCTCTATGTTGTCCAGCCTGGTCTCGAACTTGAGGTCAAGCGATACACCCGCCTTGGTCTCCCAAAGTCTCCGGATTGCAGGCGTGAGCCACCACGCCCGGCCAACAATCATGTACCCCTAAGCCCATAACCCTGTGTAATTATGCGAAAAATTCCAATAAAGGCACATTCTCCAATATACCTAACCAGTA\n", + "--- Last 10 lines ---\n", + ">chr22:51021283-51021316(-)\n", + "GAAGCCCAGGCCGGCCGGAAGAGGAGCCGAGCG\n", + ">chr22:51021477-51021754(-)\n", + "ACCCACGCTCAGGACGGACGCGCGCTGGACGGCTCTTCCTTGTCGGAGCGCCCCAGGGGTCGGGGAAGAGGGCCCGGCAAGGGAGCCCTCGCGCCGGAGCTGCAGCTGCAGCCGCCGCCCCGCCGCCCCGCCGGCTCCCACGGGGCAGAGACGCAGCTCCTCTCCGGTCTTCCCGTACGCTACCGCGCCCGGGCAGTTCCTCGCCCGCGCACGCGCCGCTCCGCCAACTGATTGGCCTCCGGCGCCTCGGATTGGCCCAGGCCGTCCAACAGCAGCC\n", + ">chr22:51021039-51021316(-)\n", + "GAAGCCCAGGCCGGCCGGAAGAGGAGCCGAGCGCGGCCGGAAGGAACCGAGCCCGTCCGAAGGGAGCGGAGCGCAGCCTGGCCTGGGGCCCGGTCGAGCCCGCGCCATGGCGGCCGAGGCGACAGCTGTGGCCGGAAGCGGGGCTGTTGGCGGCTGCCTGGCCAAAGACGGCTTGCAGCAGTCTAAGTGCCCGGACACTACCCCAAAACGGCGGCGCGCCTCGTCGCTGTCGCGTGACGCCGAGCGCCGAGCCTACCAATGGTGCCGGGAGTACTTG\n", + ">chr22:51021477-51021754(-)\n", + "ACCCACGCTCAGGACGGACGCGCGCTGGACGGCTCTTCCTTGTCGGAGCGCCCCAGGGGTCGGGGAAGAGGGCCCGGCAAGGGAGCCCTCGCGCCGGAGCTGCAGCTGCAGCCGCCGCCCCGCCGCCCCGCCGGCTCCCACGGGGCAGAGACGCAGCTCCTCTCCGGTCTTCCCGTACGCTACCGCGCCCGGGCAGTTCCTCGCCCGCGCACGCGCCGCTCCGCCAACTGATTGGCCTCCGGCGCCTCGGATTGGCCCAGGCCGTCCAACAGCAGCC\n", + ">chr22:51021039-51021316(+)\n", + "CAAGTACTCCCGGCACCATTGGTAGGCTCGGCGCTCGGCGTCACGCGACAGCGACGAGGCGCGCCGCCGTTTTGGGGTAGTGTCCGGGCACTTAGACTGCTGCAAGCCGTCTTTGGCCAGGCAGCCGCCAACAGCCCCGCTTCCGGCCACAGCTGTCGCCTCGGCCGCCATGGCGCGGGCTCGACCGGGCCCCAGGCCAGGCTGCGCTCCGCTCCCTTCGGACGGGCTCGGTTCCTTCCGGCCGCGCTCGGCTCCTCTTCCGGCCGGCCTGGGCTTC\n", + "\n" + ] + } + ], "source": [ "print(exercise5)" ] }, { "cell_type": "code", - "execution_count": null, + "execution_count": 25, "metadata": { "collapsed": true, "deletable": false, @@ -1301,4 +1523,4 @@ }, "nbformat": 4, "nbformat_minor": 0 -} \ No newline at end of file +} diff --git a/weeks/week01/README.md b/weeks/week01/README.md new file mode 100644 index 0000000..587be6b --- /dev/null +++ b/weeks/week01/README.md @@ -0,0 +1 @@ +x diff --git a/weeks/week01/biom262-hw1 b/weeks/week01/biom262-hw1 new file mode 160000 index 0000000..5b6660c --- /dev/null +++ b/weeks/week01/biom262-hw1 @@ -0,0 +1 @@ +Subproject commit 5b6660ca9be498af79a0b50e66fec3a249729ada diff --git a/weeks/week01/data/2 b/weeks/week01/data/2 new file mode 100644 index 0000000..6d5e50b --- /dev/null +++ b/weeks/week01/data/2 @@ -0,0 +1 @@ +Hello I am a message in standard error (stderr) diff --git a/weeks/week01/data/gencode.v19.annotation.chr22.transcript.promoter.nfkb.gtf b/weeks/week01/data/gencode.v19.annotation.chr22.transcript.promoter.nfkb.gtf new file mode 100644 index 0000000..53d6bcf --- /dev/null +++ b/weeks/week01/data/gencode.v19.annotation.chr22.transcript.promoter.nfkb.gtf @@ -0,0 +1,1221 @@ +chr22 HAVANA transcript 17565763 17565843 . + . gene_id "ENSG00000177663.9"; transcript_id "ENST00000477874.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "IL17RA"; transcript_type "processed_transcript"; transcript_status "PUTATIVE"; transcript_name "IL17RA-004"; level 1; tag "basic"; tag "exp_conf"; havana_gene "OTTHUMG00000150026.1"; havana_transcript "OTTHUMT00000315823.1"; +chr22 HAVANA transcript 17565763 17565848 . + . gene_id "ENSG00000177663.9"; transcript_id "ENST00000319363.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "IL17RA"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "IL17RA-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13739.1"; havana_gene "OTTHUMG00000150026.1"; havana_transcript "OTTHUMT00000315820.1"; +chr22 HAVANA transcript 17565763 17565946 . + . gene_id "ENSG00000177663.9"; transcript_id "ENST00000459971.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "IL17RA"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "IL17RA-003"; level 2; havana_gene "OTTHUMG00000150026.1"; havana_transcript "OTTHUMT00000315822.1"; +chr22 HAVANA transcript 17700267 17700502 . - . gene_id "ENSG00000093072.11"; transcript_id "ENST00000399837.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CECR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CECR1-201"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13742.1"; havana_gene "OTTHUMG00000030726.8"; havana_transcript "OTTHUMT00000316079.1"; +chr22 HAVANA transcript 17701962 17702266 . - . gene_id "ENSG00000093072.11"; transcript_id "ENST00000399837.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CECR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CECR1-201"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13742.1"; havana_gene "OTTHUMG00000030726.8"; havana_transcript "OTTHUMT00000316079.1"; +chr22 HAVANA transcript 17700326 17700502 . - . gene_id "ENSG00000093072.11"; transcript_id "ENST00000543038.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CECR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CECR1-001"; level 2; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000030726.8"; havana_transcript "OTTHUMT00000075614.5"; +chr22 HAVANA transcript 17701962 17702278 . - . gene_id "ENSG00000093072.11"; transcript_id "ENST00000543038.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CECR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CECR1-001"; level 2; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000030726.8"; havana_transcript "OTTHUMT00000075614.5"; +chr22 HAVANA transcript 18111762 18112038 . - . gene_id "ENSG00000131100.8"; transcript_id "ENST00000253413.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP6V1E1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP6V1E1-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13745.1"; havana_gene "OTTHUMG00000059320.4"; havana_transcript "OTTHUMT00000131790.3"; +chr22 HAVANA transcript 18111762 18112038 . - . gene_id "ENSG00000131100.8"; transcript_id "ENST00000399796.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP6V1E1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP6V1E1-006"; level 2; tag "basic"; tag "CCDS"; ccdsid "CCDS42978.1"; havana_gene "OTTHUMG00000059320.4"; havana_transcript "OTTHUMT00000353464.1"; +chr22 HAVANA transcript 18111762 18112038 . - . gene_id "ENSG00000131100.8"; transcript_id "ENST00000399798.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP6V1E1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP6V1E1-005"; level 2; tag "basic"; tag "CCDS"; ccdsid "CCDS42977.1"; havana_gene "OTTHUMG00000059320.4"; havana_transcript "OTTHUMT00000353463.1"; +chr22 HAVANA transcript 18111762 18112038 . - . gene_id "ENSG00000131100.8"; transcript_id "ENST00000413576.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP6V1E1"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "ATP6V1E1-004"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000059320.4"; havana_transcript "OTTHUMT00000316223.1"; +chr22 HAVANA transcript 18111762 18112038 . - . gene_id "ENSG00000131100.8"; transcript_id "ENST00000478963.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP6V1E1"; transcript_type "processed_transcript"; transcript_status "PUTATIVE"; transcript_name "ATP6V1E1-003"; level 2; tag "basic"; havana_gene "OTTHUMG00000059320.4"; havana_transcript "OTTHUMT00000316222.1"; +chr22 HAVANA transcript 18111762 18112038 . - . gene_id "ENSG00000131100.8"; transcript_id "ENST00000460085.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP6V1E1"; transcript_type "processed_transcript"; transcript_status "PUTATIVE"; transcript_name "ATP6V1E1-002"; level 2; havana_gene "OTTHUMG00000059320.4"; havana_transcript "OTTHUMT00000316221.1"; +chr22 HAVANA transcript 18121203 18121355 . + . gene_id "ENSG00000099968.13"; transcript_id "ENST00000317582.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BCL2L13"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BCL2L13-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13746.1"; havana_gene "OTTHUMG00000150088.3"; havana_transcript "OTTHUMT00000316184.1"; +chr22 HAVANA transcript 18121203 18121506 . + . gene_id "ENSG00000099968.13"; transcript_id "ENST00000498133.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BCL2L13"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BCL2L13-003"; level 2; havana_gene "OTTHUMG00000150088.3"; havana_transcript "OTTHUMT00000316186.2"; +chr22 ENSEMBL transcript 18121203 18121506 . + . gene_id "ENSG00000099968.13"; transcript_id "ENST00000543133.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BCL2L13"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BCL2L13-204"; level 3; tag "basic"; tag "CCDS"; ccdsid "CCDS59448.1"; havana_gene "OTTHUMG00000150088.3"; +chr22 HAVANA transcript 18121203 18121522 . + . gene_id "ENSG00000099968.13"; transcript_id "ENST00000464649.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BCL2L13"; transcript_type "processed_transcript"; transcript_status "PUTATIVE"; transcript_name "BCL2L13-009"; level 2; havana_gene "OTTHUMG00000150088.3"; havana_transcript "OTTHUMT00000316192.1"; +chr22 ENSEMBL transcript 18121203 18121522 . + . gene_id "ENSG00000099968.13"; transcript_id "ENST00000538149.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BCL2L13"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BCL2L13-203"; level 3; tag "basic"; havana_gene "OTTHUMG00000150088.3"; +chr22 ENSEMBL transcript 18121203 18121529 . + . gene_id "ENSG00000099968.13"; transcript_id "ENST00000337612.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BCL2L13"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BCL2L13-201"; level 3; tag "basic"; tag "CCDS"; ccdsid "CCDS59448.1"; havana_gene "OTTHUMG00000150088.3"; +chr22 HAVANA transcript 18121203 18121537 . + . gene_id "ENSG00000099968.13"; transcript_id "ENST00000493680.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BCL2L13"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BCL2L13-004"; level 2; tag "alternative_5_UTR"; tag "basic"; havana_gene "OTTHUMG00000150088.3"; havana_transcript "OTTHUMT00000316187.2"; +chr22 HAVANA transcript 18121203 18121576 . + . gene_id "ENSG00000099968.13"; transcript_id "ENST00000355028.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BCL2L13"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "BCL2L13-005"; level 2; tag "basic"; tag "CCDS"; ccdsid "CCDS59447.1"; havana_gene "OTTHUMG00000150088.3"; havana_transcript "OTTHUMT00000316188.1"; +chr22 HAVANA transcript 18225198 18225524 . - . gene_id "ENSG00000015475.14"; transcript_id "ENST00000494097.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BID"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "BID-005"; level 2; havana_gene "OTTHUMG00000150087.4"; havana_transcript "OTTHUMT00000316182.1"; +chr22 HAVANA transcript 18259889 18260087 . + . gene_id "ENSG00000269220.1"; transcript_id "ENST00000600723.1"; gene_type "lincRNA"; gene_status "KNOWN"; gene_name "LINC00528"; transcript_type "lincRNA"; transcript_status "KNOWN"; transcript_name "LINC00528-001"; level 2; tag "basic"; havana_gene "OTTHUMG00000186097.1"; havana_transcript "OTTHUMT00000472248.1"; +chr22 HAVANA transcript 18560564 18560818 . - . gene_id "ENSG00000225335.2"; transcript_id "ENST00000426483.1"; gene_type "antisense"; gene_status "NOVEL"; gene_name "XXbac-B476C20.9"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "XXbac-B476C20.9-001"; level 1; tag "basic"; tag "exp_conf"; havana_gene "OTTHUMG00000149968.2"; havana_transcript "OTTHUMT00000314642.1"; +chr22 HAVANA transcript 18558833 18559192 . + . gene_id "ENSG00000215193.8"; transcript_id "ENST00000329627.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PEX26"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PEX26-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13750.1"; havana_gene "OTTHUMG00000149970.5"; havana_transcript "OTTHUMT00000314644.3"; +chr22 HAVANA transcript 18560386 18560688 . + . gene_id "ENSG00000215193.8"; transcript_id "ENST00000329627.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PEX26"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PEX26-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13750.1"; havana_gene "OTTHUMG00000149970.5"; havana_transcript "OTTHUMT00000314644.3"; +chr22 HAVANA transcript 18558833 18559192 . + . gene_id "ENSG00000215193.8"; transcript_id "ENST00000399744.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PEX26"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PEX26-002"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13750.1"; havana_gene "OTTHUMG00000149970.5"; havana_transcript "OTTHUMT00000314645.1"; +chr22 HAVANA transcript 18560386 18560773 . + . gene_id "ENSG00000215193.8"; transcript_id "ENST00000399744.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PEX26"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PEX26-002"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13750.1"; havana_gene "OTTHUMG00000149970.5"; havana_transcript "OTTHUMT00000314645.1"; +chr22 HAVANA transcript 18558833 18559192 . + . gene_id "ENSG00000215193.8"; transcript_id "ENST00000474897.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PEX26"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "PEX26-004"; level 2; havana_gene "OTTHUMG00000149970.5"; havana_transcript "OTTHUMT00000316267.2"; +chr22 HAVANA transcript 18560386 18560780 . + . gene_id "ENSG00000215193.8"; transcript_id "ENST00000474897.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PEX26"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "PEX26-004"; level 2; havana_gene "OTTHUMG00000149970.5"; havana_transcript "OTTHUMT00000316267.2"; +chr22 HAVANA transcript 18559143 18559192 . + . gene_id "ENSG00000215193.8"; transcript_id "ENST00000428061.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PEX26"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "PEX26-003"; level 1; tag "basic"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS56221.1"; havana_gene "OTTHUMG00000149970.5"; havana_transcript "OTTHUMT00000314646.1"; +chr22 HAVANA transcript 18560386 18560818 . + . gene_id "ENSG00000215193.8"; transcript_id "ENST00000428061.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PEX26"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "PEX26-003"; level 1; tag "basic"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS56221.1"; havana_gene "OTTHUMG00000149970.5"; havana_transcript "OTTHUMT00000314646.1"; +chr22 HAVANA transcript 18586689 18587013 . - . gene_id "ENSG00000225225.1"; transcript_id "ENST00000446487.1"; gene_type "pseudogene"; gene_status "KNOWN"; gene_name "ARL2BPP10"; transcript_type "processed_pseudogene"; transcript_status "KNOWN"; transcript_name "ARL2BPP10-001"; level 2; ont "PGO:0000004"; havana_gene "OTTHUMG00000155640.1"; havana_transcript "OTTHUMT00000340946.1"; +chr22 HAVANA transcript 18632629 18632665 . + . gene_id "ENSG00000184979.9"; transcript_id "ENST00000215794.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "USP18"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "USP18-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13752.1"; havana_gene "OTTHUMG00000150104.1"; havana_transcript "OTTHUMT00000316368.1"; +chr22 HAVANA transcript 19132208 19132484 . - . gene_id "ENSG00000100056.7"; transcript_id "ENST00000252137.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "DGCR14"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "DGCR14-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13756.1"; havana_gene "OTTHUMG00000150119.5"; havana_transcript "OTTHUMT00000316432.2"; +chr22 HAVANA transcript 19132208 19132484 . - . gene_id "ENSG00000100056.7"; transcript_id "ENST00000434568.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "DGCR14"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "DGCR14-002"; level 2; havana_gene "OTTHUMG00000150119.5"; havana_transcript "OTTHUMT00000316433.2"; +chr22 HAVANA transcript 19132208 19132484 . - . gene_id "ENSG00000100056.7"; transcript_id "ENST00000472073.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "DGCR14"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "DGCR14-003"; level 2; havana_gene "OTTHUMG00000150119.5"; havana_transcript "OTTHUMT00000316434.2"; +chr22 HAVANA transcript 19132208 19132484 . - . gene_id "ENSG00000100056.7"; transcript_id "ENST00000469466.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "DGCR14"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "DGCR14-004"; level 2; havana_gene "OTTHUMG00000150119.5"; havana_transcript "OTTHUMT00000316435.2"; +chr22 HAVANA transcript 19158882 19158907 . + . gene_id "ENSG00000260924.2"; transcript_id "ENST00000565162.2"; gene_type "antisense"; gene_status "KNOWN"; gene_name "AC004463.6"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "AC004463.6-001"; level 2; tag "basic"; havana_gene "OTTHUMG00000172740.2"; havana_transcript "OTTHUMT00000420341.2"; +chr22 HAVANA transcript 19419220 19419415 . - . gene_id "ENSG00000100084.10"; transcript_id "ENST00000340170.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HIRA"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HIRA-002"; level 2; tag "basic"; havana_gene "OTTHUMG00000150134.4"; havana_transcript "OTTHUMT00000316489.2"; +chr22 HAVANA transcript 19419850 19420217 . - . gene_id "ENSG00000100084.10"; transcript_id "ENST00000340170.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HIRA"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HIRA-002"; level 2; tag "basic"; havana_gene "OTTHUMG00000150134.4"; havana_transcript "OTTHUMT00000316489.2"; +chr22 HAVANA transcript 19419257 19419415 . - . gene_id "ENSG00000100084.10"; transcript_id "ENST00000263208.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HIRA"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HIRA-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13759.1"; havana_gene "OTTHUMG00000150134.4"; havana_transcript "OTTHUMT00000316488.2"; +chr22 HAVANA transcript 19419850 19420217 . - . gene_id "ENSG00000100084.10"; transcript_id "ENST00000263208.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HIRA"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HIRA-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13759.1"; havana_gene "OTTHUMG00000150134.4"; havana_transcript "OTTHUMT00000316488.2"; +chr22 ENSEMBL transcript 19435225 19435316 . - . gene_id "ENSG00000100084.10"; transcript_id "ENST00000541063.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HIRA"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HIRA-201"; level 3; tag "basic"; havana_gene "OTTHUMG00000150134.4"; +chr22 ENSEMBL transcript 19435215 19435316 . - . gene_id "ENSG00000100084.10"; transcript_id "ENST00000546308.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HIRA"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HIRA-202"; level 3; tag "basic"; havana_gene "OTTHUMG00000150134.4"; +chr22 HAVANA transcript 19419139 19419415 . - . gene_id "ENSG00000100084.10"; transcript_id "ENST00000464189.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HIRA"; transcript_type "processed_transcript"; transcript_status "PUTATIVE"; transcript_name "HIRA-003"; level 2; tag "mRNA_end_NF"; tag "basic"; havana_gene "OTTHUMG00000150134.4"; havana_transcript "OTTHUMT00000316499.1"; +chr22 HAVANA transcript 19434984 19435316 . - . gene_id "ENSG00000100084.10"; transcript_id "ENST00000452818.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HIRA"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "HIRA-004"; level 2; tag "mRNA_start_NF"; tag "cds_start_NF"; havana_gene "OTTHUMG00000150134.4"; havana_transcript "OTTHUMT00000334594.1"; +chr22 HAVANA transcript 19435215 19435316 . - . gene_id "ENSG00000242259.4"; transcript_id "ENST00000509549.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "C22orf39"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "C22orf39-003"; level 2; havana_gene "OTTHUMG00000150137.4"; havana_transcript "OTTHUMT00000367691.1"; +chr22 HAVANA transcript 19435216 19435316 . - . gene_id "ENSG00000242259.4"; transcript_id "ENST00000399568.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "C22orf39"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "C22orf39-002"; level 2; tag "basic"; havana_gene "OTTHUMG00000150137.4"; havana_transcript "OTTHUMT00000316495.1"; +chr22 HAVANA transcript 19435221 19435316 . - . gene_id "ENSG00000242259.4"; transcript_id "ENST00000333059.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "C22orf39"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "C22orf39-004"; level 2; tag "basic"; tag "appris_principal"; havana_gene "OTTHUMG00000150137.4"; havana_transcript "OTTHUMT00000472517.1"; +chr22 HAVANA transcript 19419139 19419415 . + . gene_id "ENSG00000185608.4"; transcript_id "ENST00000333130.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MRPL40"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "MRPL40-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13760.1"; havana_gene "OTTHUMG00000150136.3"; havana_transcript "OTTHUMT00000316491.2"; +chr22 HAVANA transcript 19419139 19419415 . + . gene_id "ENSG00000185608.4"; transcript_id "ENST00000443660.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MRPL40"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "MRPL40-002"; level 2; tag "basic"; havana_gene "OTTHUMG00000150136.3"; havana_transcript "OTTHUMT00000316492.3"; +chr22 HAVANA transcript 19419850 19420101 . + . gene_id "ENSG00000185608.4"; transcript_id "ENST00000443660.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MRPL40"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "MRPL40-002"; level 2; tag "basic"; havana_gene "OTTHUMG00000150136.3"; havana_transcript "OTTHUMT00000316492.3"; +chr22 HAVANA transcript 19419139 19419415 . + . gene_id "ENSG00000185608.4"; transcript_id "ENST00000471259.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MRPL40"; transcript_type "processed_transcript"; transcript_status "PUTATIVE"; transcript_name "MRPL40-003"; level 2; havana_gene "OTTHUMG00000150136.3"; havana_transcript "OTTHUMT00000316493.1"; +chr22 HAVANA transcript 19419850 19420217 . + . gene_id "ENSG00000185608.4"; transcript_id "ENST00000471259.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MRPL40"; transcript_type "processed_transcript"; transcript_status "PUTATIVE"; transcript_name "MRPL40-003"; level 2; havana_gene "OTTHUMG00000150136.3"; havana_transcript "OTTHUMT00000316493.1"; +chr22 HAVANA transcript 19434984 19435316 . + . gene_id "ENSG00000185065.6"; transcript_id "ENST00000431090.1"; gene_type "antisense"; gene_status "NOVEL"; gene_name "AC000068.5"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "AC000068.5-001"; level 2; tag "basic"; havana_gene "OTTHUMG00000150135.1"; havana_transcript "OTTHUMT00000316490.1"; +chr22 HAVANA transcript 19702743 19702984 . + . gene_id "ENSG00000184702.13"; transcript_id "ENST00000455843.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SEPT5"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "SEPT5-003"; level 2; havana_gene "OTTHUMG00000150399.7"; havana_transcript "OTTHUMT00000317939.1"; +chr22 HAVANA transcript 19702793 19702984 . + . gene_id "ENSG00000184702.13"; transcript_id "ENST00000431124.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SEPT5"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "SEPT5-010"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000150399.7"; havana_transcript "OTTHUMT00000317959.1"; +chr22 HAVANA transcript 19842463 19842694 . - . gene_id "ENSG00000185838.9"; transcript_id "ENST00000329517.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GNB1L"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GNB1L-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13768.1"; havana_gene "OTTHUMG00000150279.2"; havana_transcript "OTTHUMT00000075202.1"; +chr22 HAVANA transcript 19842367 19842694 . - . gene_id "ENSG00000185838.9"; transcript_id "ENST00000403325.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GNB1L"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GNB1L-003"; level 2; tag "alternative_5_UTR"; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13768.1"; havana_gene "OTTHUMG00000150279.2"; havana_transcript "OTTHUMT00000317293.2"; +chr22 HAVANA transcript 19842463 19842694 . - . gene_id "ENSG00000185838.9"; transcript_id "ENST00000405009.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GNB1L"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GNB1L-005"; level 2; tag "basic"; havana_gene "OTTHUMG00000150279.2"; havana_transcript "OTTHUMT00000317295.1"; +chr22 HAVANA transcript 19842330 19842694 . - . gene_id "ENSG00000185838.9"; transcript_id "ENST00000460402.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GNB1L"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "GNB1L-002"; level 2; tag "basic"; havana_gene "OTTHUMG00000150279.2"; havana_transcript "OTTHUMT00000317292.1"; +chr22 HAVANA transcript 19842340 19842694 . - . gene_id "ENSG00000185838.9"; transcript_id "ENST00000481086.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GNB1L"; transcript_type "processed_transcript"; transcript_status "PUTATIVE"; transcript_name "GNB1L-006"; level 2; havana_gene "OTTHUMG00000150279.2"; havana_transcript "OTTHUMT00000318899.1"; +chr22 HAVANA transcript 19842367 19842694 . - . gene_id "ENSG00000185838.9"; transcript_id "ENST00000453108.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GNB1L"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "GNB1L-004"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000150279.2"; havana_transcript "OTTHUMT00000317294.1"; +chr22 HAVANA transcript 19842420 19842694 . - . gene_id "ENSG00000215012.4"; transcript_id "ENST00000407472.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "C22orf29"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "C22orf29-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13769.1"; havana_gene "OTTHUMG00000030314.3"; havana_transcript "OTTHUMT00000317288.1"; +chr22 HAVANA transcript 19842364 19842694 . - . gene_id "ENSG00000215012.4"; transcript_id "ENST00000328554.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "C22orf29"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "C22orf29-002"; level 2; tag "alternative_5_UTR"; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13769.1"; havana_gene "OTTHUMG00000030314.3"; havana_transcript "OTTHUMT00000317289.2"; +chr22 HAVANA transcript 19842387 19842694 . - . gene_id "ENSG00000215012.4"; transcript_id "ENST00000484072.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "C22orf29"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "C22orf29-004"; level 2; tag "basic"; havana_gene "OTTHUMG00000030314.3"; havana_transcript "OTTHUMT00000317291.1"; +chr22 HAVANA transcript 19842410 19842694 . - . gene_id "ENSG00000215012.4"; transcript_id "ENST00000405640.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "C22orf29"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "C22orf29-003"; level 2; tag "alternative_5_UTR"; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13769.1"; havana_gene "OTTHUMG00000030314.3"; havana_transcript "OTTHUMT00000317290.2"; +chr22 HAVANA transcript 19842340 19842694 . - . gene_id "ENSG00000215012.4"; transcript_id "ENST00000416337.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "C22orf29"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "C22orf29-005"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000030314.3"; havana_transcript "OTTHUMT00000318933.1"; +chr22 HAVANA transcript 19929331 19929525 . - . gene_id "ENSG00000184470.15"; transcript_id "ENST00000474308.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TXNRD2"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "TXNRD2-007"; level 2; havana_gene "OTTHUMG00000149975.4"; havana_transcript "OTTHUMT00000314907.2"; +chr22 HAVANA transcript 19929334 19929525 . - . gene_id "ENSG00000184470.15"; transcript_id "ENST00000400521.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TXNRD2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TXNRD2-003"; level 2; tag "NMD_exception"; tag "basic"; tag "appris_candidate_longest"; tag "CCDS"; tag "seleno"; ccdsid "CCDS42981.1"; havana_gene "OTTHUMG00000149975.4"; havana_transcript "OTTHUMT00000314903.3"; +chr22 HAVANA transcript 19929342 19929525 . - . gene_id "ENSG00000184470.15"; transcript_id "ENST00000400525.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TXNRD2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "TXNRD2-006"; level 2; tag "not_organism_supported"; havana_gene "OTTHUMG00000149975.4"; havana_transcript "OTTHUMT00000314906.3"; +chr22 HAVANA transcript 19929327 19929525 . - . gene_id "ENSG00000184470.15"; transcript_id "ENST00000400519.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TXNRD2"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "TXNRD2-012"; level 2; tag "basic"; tag "appris_candidate"; tag "seleno"; havana_gene "OTTHUMG00000149975.4"; havana_transcript "OTTHUMT00000314921.2"; +chr22 ENSEMBL transcript 19929327 19929525 . - . gene_id "ENSG00000184470.15"; transcript_id "ENST00000535882.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TXNRD2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TXNRD2-202"; level 3; tag "basic"; tag "appris_candidate"; havana_gene "OTTHUMG00000149975.4"; +chr22 ENSEMBL transcript 19929328 19929525 . - . gene_id "ENSG00000184470.15"; transcript_id "ENST00000334363.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TXNRD2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TXNRD2-201"; level 3; tag "basic"; havana_gene "OTTHUMG00000149975.4"; +chr22 HAVANA transcript 19929332 19929525 . - . gene_id "ENSG00000184470.15"; transcript_id "ENST00000496729.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TXNRD2"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "TXNRD2-013"; level 2; havana_gene "OTTHUMG00000149975.4"; havana_transcript "OTTHUMT00000314922.1"; +chr22 HAVANA transcript 19929225 19929255 . + . gene_id "ENSG00000093010.7"; transcript_id "ENST00000403184.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "COMT"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "COMT-004"; level 2; tag "basic"; havana_gene "OTTHUMG00000150529.6"; havana_transcript "OTTHUMT00000318773.2"; +chr22 HAVANA transcript 19929225 19929295 . + . gene_id "ENSG00000093010.7"; transcript_id "ENST00000403710.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "COMT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "COMT-002"; level 2; tag "alternative_5_UTR"; tag "basic"; tag "appris_candidate_longest"; tag "CCDS"; ccdsid "CCDS13770.1"; havana_gene "OTTHUMG00000150529.6"; havana_transcript "OTTHUMT00000318771.3"; +chr22 HAVANA transcript 19929225 19929310 . + . gene_id "ENSG00000093010.7"; transcript_id "ENST00000407537.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "COMT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "COMT-003"; level 2; tag "alternative_5_UTR"; tag "basic"; tag "appris_candidate"; tag "CCDS"; ccdsid "CCDS46663.1"; havana_gene "OTTHUMG00000150529.6"; havana_transcript "OTTHUMT00000318772.3"; +chr22 HAVANA transcript 19929225 19929315 . + . gene_id "ENSG00000093010.7"; transcript_id "ENST00000467943.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "COMT"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "COMT-009"; level 2; havana_gene "OTTHUMG00000150529.6"; havana_transcript "OTTHUMT00000318852.2"; +chr22 HAVANA transcript 20104819 20105036 . - . gene_id "ENSG00000099899.10"; transcript_id "ENST00000252136.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TRMT2A"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TRMT2A-001"; level 2; tag "basic"; tag "appris_candidate_longest"; tag "CCDS"; ccdsid "CCDS13774.1"; havana_gene "OTTHUMG00000150454.9"; havana_transcript "OTTHUMT00000318168.3"; +chr22 HAVANA transcript 20104916 20105036 . - . gene_id "ENSG00000099899.10"; transcript_id "ENST00000403707.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TRMT2A"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TRMT2A-005"; level 2; tag "basic"; tag "appris_candidate_longest"; tag "CCDS"; ccdsid "CCDS13774.1"; havana_gene "OTTHUMG00000150454.9"; havana_transcript "OTTHUMT00000318251.1"; +chr22 HAVANA transcript 20104769 20105036 . - . gene_id "ENSG00000099899.10"; transcript_id "ENST00000404751.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TRMT2A"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TRMT2A-002"; level 2; tag "basic"; tag "appris_candidate"; tag "CCDS"; ccdsid "CCDS58793.1"; havana_gene "OTTHUMG00000150454.9"; havana_transcript "OTTHUMT00000318248.1"; +chr22 HAVANA transcript 20104760 20105036 . - . gene_id "ENSG00000099899.10"; transcript_id "ENST00000439169.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TRMT2A"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "TRMT2A-003"; level 2; tag "basic"; havana_gene "OTTHUMG00000150454.9"; havana_transcript "OTTHUMT00000318249.1"; +chr22 HAVANA transcript 20104760 20105036 . - . gene_id "ENSG00000099899.10"; transcript_id "ENST00000494820.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TRMT2A"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "TRMT2A-010"; level 2; havana_gene "OTTHUMG00000150454.9"; havana_transcript "OTTHUMT00000318297.1"; +chr22 HAVANA transcript 20104760 20105036 . - . gene_id "ENSG00000099899.10"; transcript_id "ENST00000492988.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TRMT2A"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "TRMT2A-021"; level 2; tag "not_organism_supported"; tag "basic"; havana_gene "OTTHUMG00000150454.9"; havana_transcript "OTTHUMT00000319847.1"; +chr22 HAVANA transcript 20104760 20104962 . - . gene_id "ENSG00000099899.10"; transcript_id "ENST00000471040.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TRMT2A"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "TRMT2A-013"; level 2; havana_gene "OTTHUMG00000150454.9"; havana_transcript "OTTHUMT00000318318.2"; +chr22 HAVANA transcript 20104760 20104915 . - . gene_id "ENSG00000099899.10"; transcript_id "ENST00000463710.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TRMT2A"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "TRMT2A-012"; level 2; havana_gene "OTTHUMG00000150454.9"; havana_transcript "OTTHUMT00000318317.1"; +chr22 HAVANA transcript 20104760 20105036 . - . gene_id "ENSG00000099899.10"; transcript_id "ENST00000459644.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TRMT2A"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "TRMT2A-011"; level 2; tag "mRNA_end_NF"; havana_gene "OTTHUMG00000150454.9"; havana_transcript "OTTHUMT00000318298.1"; +chr22 HAVANA transcript 20104760 20105036 . - . gene_id "ENSG00000099899.10"; transcript_id "ENST00000468917.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TRMT2A"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "TRMT2A-008"; level 2; tag "mRNA_start_NF"; havana_gene "OTTHUMG00000150454.9"; havana_transcript "OTTHUMT00000318295.1"; +chr22 HAVANA transcript 20104760 20105036 . - . gene_id "ENSG00000099899.10"; transcript_id "ENST00000480460.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TRMT2A"; transcript_type "processed_transcript"; transcript_status "PUTATIVE"; transcript_name "TRMT2A-009"; level 2; tag "mRNA_start_NF"; havana_gene "OTTHUMG00000150454.9"; havana_transcript "OTTHUMT00000318296.1"; +chr22 HAVANA transcript 20104760 20105036 . - . gene_id "ENSG00000099899.10"; transcript_id "ENST00000494641.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TRMT2A"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "TRMT2A-007"; level 2; havana_gene "OTTHUMG00000150454.9"; havana_transcript "OTTHUMT00000318253.2"; +chr22 HAVANA transcript 20104760 20105036 . - . gene_id "ENSG00000099899.10"; transcript_id "ENST00000464535.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TRMT2A"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "TRMT2A-020"; level 2; havana_gene "OTTHUMG00000150454.9"; havana_transcript "OTTHUMT00000319846.1"; +chr22 HAVANA transcript 20104763 20105036 . - . gene_id "ENSG00000099899.10"; transcript_id "ENST00000445045.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TRMT2A"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TRMT2A-006"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000150454.9"; havana_transcript "OTTHUMT00000318252.1"; +chr22 HAVANA transcript 20104760 20104946 . + . gene_id "ENSG00000099901.12"; transcript_id "ENST00000402752.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RANBP1"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "RANBP1-001"; level 2; tag "basic"; tag "appris_candidate"; havana_gene "OTTHUMG00000150490.31"; havana_transcript "OTTHUMT00000318392.4"; +chr22 HAVANA transcript 20104760 20105036 . + . gene_id "ENSG00000099901.12"; transcript_id "ENST00000488484.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RANBP1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "RANBP1-005"; level 2; havana_gene "OTTHUMG00000150490.31"; havana_transcript "OTTHUMT00000318488.2"; +chr22 HAVANA transcript 20104760 20105036 . + . gene_id "ENSG00000099901.12"; transcript_id "ENST00000331821.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RANBP1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RANBP1-015"; level 2; tag "basic"; tag "appris_candidate_longest"; tag "CCDS"; ccdsid "CCDS13775.1"; havana_gene "OTTHUMG00000150490.31"; havana_transcript "OTTHUMT00000343733.1"; +chr22 HAVANA transcript 20104760 20105036 . + . gene_id "ENSG00000099901.12"; transcript_id "ENST00000411892.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RANBP1"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "RANBP1-012"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000150490.31"; havana_transcript "OTTHUMT00000319935.1"; +chr22 HAVANA transcript 20104760 20105036 . + . gene_id "ENSG00000099901.12"; transcript_id "ENST00000467920.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RANBP1"; transcript_type "processed_transcript"; transcript_status "PUTATIVE"; transcript_name "RANBP1-013"; level 2; tag "basic"; havana_gene "OTTHUMG00000150490.31"; havana_transcript "OTTHUMT00000319936.1"; +chr22 HAVANA transcript 20104760 20105036 . + . gene_id "ENSG00000099901.12"; transcript_id "ENST00000416427.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RANBP1"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "RANBP1-006"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000150490.31"; havana_transcript "OTTHUMT00000318489.28"; +chr22 HAVANA transcript 20104760 20105036 . + . gene_id "ENSG00000099901.12"; transcript_id "ENST00000421656.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RANBP1"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "RANBP1-007"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000150490.31"; havana_transcript "OTTHUMT00000318490.2"; +chr22 HAVANA transcript 20104760 20105036 . + . gene_id "ENSG00000099901.12"; transcript_id "ENST00000423859.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RANBP1"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "RANBP1-008"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000150490.31"; havana_transcript "OTTHUMT00000318491.3"; +chr22 HAVANA transcript 20104760 20105036 . + . gene_id "ENSG00000099901.12"; transcript_id "ENST00000418705.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RANBP1"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "RANBP1-009"; level 1; tag "mRNA_end_NF"; tag "cds_end_NF"; tag "exp_conf"; havana_gene "OTTHUMG00000150490.31"; havana_transcript "OTTHUMT00000318497.2"; +chr22 HAVANA transcript 20193874 20194150 . - . gene_id "ENSG00000249923.1"; transcript_id "ENST00000506039.1"; gene_type "antisense"; gene_status "NOVEL"; gene_name "XXbac-B444P24.8"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "XXbac-B444P24.8-001"; level 2; tag "basic"; havana_gene "OTTHUMG00000150567.3"; havana_transcript "OTTHUMT00000318944.3"; +chr22 HAVANA transcript 20193874 20193919 . + . gene_id "ENSG00000236499.2"; transcript_id "ENST00000609602.1"; gene_type "lincRNA"; gene_status "KNOWN"; gene_name "LINC00896"; transcript_type "lincRNA"; transcript_status "KNOWN"; transcript_name "LINC00896-001"; level 2; tag "basic"; havana_gene "OTTHUMG00000186112.1"; havana_transcript "OTTHUMT00000472273.1"; +chr22 ENSEMBL transcript 20193874 20194099 . + . gene_id "ENSG00000236499.2"; transcript_id "ENST00000423736.1"; gene_type "lincRNA"; gene_status "KNOWN"; gene_name "LINC00896"; transcript_type "lincRNA"; transcript_status "KNOWN"; transcript_name "LINC00896-201"; level 3; havana_gene "OTTHUMG00000186112.1"; +chr22 HAVANA transcript 20748407 20748417 . + . gene_id "ENSG00000185252.13"; transcript_id "ENST00000403682.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ZNF74"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "ZNF74-002"; level 1; tag "basic"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS58794.1"; havana_gene "OTTHUMG00000150687.3"; havana_transcript "OTTHUMT00000319645.2"; +chr22 HAVANA transcript 20748407 20748450 . + . gene_id "ENSG00000185252.13"; transcript_id "ENST00000357502.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ZNF74"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "ZNF74-001"; level 2; tag "basic"; havana_gene "OTTHUMG00000150687.3"; havana_transcript "OTTHUMT00000319622.3"; +chr22 HAVANA transcript 20748407 20748477 . + . gene_id "ENSG00000185252.13"; transcript_id "ENST00000493734.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ZNF74"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ZNF74-003"; level 2; havana_gene "OTTHUMG00000150687.3"; havana_transcript "OTTHUMT00000319646.2"; +chr22 HAVANA transcript 20748407 20748478 . + . gene_id "ENSG00000185252.13"; transcript_id "ENST00000420626.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ZNF74"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "ZNF74-007"; level 1; tag "mRNA_end_NF"; tag "cds_end_NF"; tag "exp_conf"; havana_gene "OTTHUMG00000150687.3"; havana_transcript "OTTHUMT00000319650.2"; +chr22 ENSEMBL transcript 20748407 20748478 . + . gene_id "ENSG00000185252.13"; transcript_id "ENST00000356671.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ZNF74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ZNF74-201"; level 3; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS42982.1"; havana_gene "OTTHUMG00000150687.3"; +chr22 HAVANA transcript 20748407 20748683 . + . gene_id "ENSG00000185252.13"; transcript_id "ENST00000437275.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ZNF74"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ZNF74-004"; level 2; tag "alternative_5_UTR"; havana_gene "OTTHUMG00000150687.3"; havana_transcript "OTTHUMT00000319647.2"; +chr22 HAVANA transcript 20748407 20748683 . + . gene_id "ENSG00000185252.13"; transcript_id "ENST00000405993.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ZNF74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ZNF74-008"; level 2; tag "basic"; tag "CCDS"; ccdsid "CCDS42982.1"; havana_gene "OTTHUMG00000150687.3"; havana_transcript "OTTHUMT00000322214.1"; +chr22 HAVANA transcript 20861708 20861827 . + . gene_id "ENSG00000099917.13"; transcript_id "ENST00000444094.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MED15"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "MED15-009"; level 2; havana_gene "OTTHUMG00000150810.8"; havana_transcript "OTTHUMT00000320228.2"; +chr22 HAVANA transcript 20861708 20861868 . + . gene_id "ENSG00000099917.13"; transcript_id "ENST00000486656.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MED15"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "MED15-019"; level 2; tag "mRNA_end_NF"; havana_gene "OTTHUMG00000150810.8"; havana_transcript "OTTHUMT00000320318.1"; +chr22 HAVANA transcript 20861708 20861868 . + . gene_id "ENSG00000099917.13"; transcript_id "ENST00000414658.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MED15"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "MED15-010"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000150810.8"; havana_transcript "OTTHUMT00000320309.1"; +chr22 HAVANA transcript 20861708 20861871 . + . gene_id "ENSG00000099917.13"; transcript_id "ENST00000433831.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MED15"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "MED15-003"; level 2; havana_gene "OTTHUMG00000150810.8"; havana_transcript "OTTHUMT00000320176.2"; +chr22 HAVANA transcript 20861708 20861880 . + . gene_id "ENSG00000099917.13"; transcript_id "ENST00000432052.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MED15"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "MED15-011"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000150810.8"; havana_transcript "OTTHUMT00000320310.1"; +chr22 ENSEMBL transcript 20861708 20861885 . + . gene_id "ENSG00000099917.13"; transcript_id "ENST00000425759.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MED15"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "MED15-201"; level 3; tag "basic"; havana_gene "OTTHUMG00000150810.8"; +chr22 HAVANA transcript 20861708 20861888 . + . gene_id "ENSG00000099917.13"; transcript_id "ENST00000292733.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MED15"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "MED15-001"; level 2; tag "basic"; tag "appris_candidate_longest"; tag "CCDS"; ccdsid "CCDS13781.1"; havana_gene "OTTHUMG00000150810.8"; havana_transcript "OTTHUMT00000320174.2"; +chr22 ENSEMBL transcript 20861708 20861890 . + . gene_id "ENSG00000099917.13"; transcript_id "ENST00000542773.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MED15"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "MED15-203"; level 3; tag "basic"; havana_gene "OTTHUMG00000150810.8"; +chr22 HAVANA transcript 20861708 20861896 . + . gene_id "ENSG00000099917.13"; transcript_id "ENST00000263205.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MED15"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "MED15-004"; level 2; tag "basic"; tag "CCDS"; ccdsid "CCDS33602.1"; havana_gene "OTTHUMG00000150810.8"; havana_transcript "OTTHUMT00000320177.2"; +chr22 HAVANA transcript 20861708 20861898 . + . gene_id "ENSG00000099917.13"; transcript_id "ENST00000477824.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MED15"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "MED15-012"; level 2; tag "mRNA_end_NF"; havana_gene "OTTHUMG00000150810.8"; havana_transcript "OTTHUMT00000320311.1"; +chr22 HAVANA transcript 20861708 20861904 . + . gene_id "ENSG00000099917.13"; transcript_id "ENST00000406969.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MED15"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "MED15-005"; level 2; tag "basic"; havana_gene "OTTHUMG00000150810.8"; havana_transcript "OTTHUMT00000320178.1"; +chr22 HAVANA transcript 20861708 20861927 . + . gene_id "ENSG00000099917.13"; transcript_id "ENST00000382974.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MED15"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "MED15-006"; level 2; tag "basic"; tag "appris_candidate"; havana_gene "OTTHUMG00000150810.8"; havana_transcript "OTTHUMT00000320225.1"; +chr22 HAVANA transcript 20861708 20862013 . + . gene_id "ENSG00000099917.13"; transcript_id "ENST00000441501.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MED15"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "MED15-013"; level 2; havana_gene "OTTHUMG00000150810.8"; havana_transcript "OTTHUMT00000320312.1"; +chr22 HAVANA transcript 20861708 20862013 . + . gene_id "ENSG00000099917.13"; transcript_id "ENST00000541476.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MED15"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "MED15-202"; level 2; tag "basic"; havana_gene "OTTHUMG00000150810.8"; havana_transcript "OTTHUMT00000320178.1"; +chr22 HAVANA transcript 20861708 20862013 . + . gene_id "ENSG00000099917.13"; transcript_id "ENST00000438962.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MED15"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "MED15-014"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000150810.8"; havana_transcript "OTTHUMT00000320313.1"; +chr22 HAVANA transcript 20905547 20905576 . + . gene_id "ENSG00000099917.13"; transcript_id "ENST00000423862.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MED15"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "MED15-023"; level 2; tag "mRNA_start_NF"; tag "mRNA_end_NF"; tag "cds_start_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000150810.8"; havana_transcript "OTTHUMT00000320372.1"; +chr22 HAVANA transcript 20905547 20905599 . + . gene_id "ENSG00000099917.13"; transcript_id "ENST00000420849.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MED15"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "MED15-024"; level 2; havana_gene "OTTHUMG00000150810.8"; havana_transcript "OTTHUMT00000320373.2"; +chr22 HAVANA transcript 20905547 20905693 . + . gene_id "ENSG00000099917.13"; transcript_id "ENST00000487550.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MED15"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "MED15-025"; level 2; havana_gene "OTTHUMG00000150810.8"; havana_transcript "OTTHUMT00000320374.1"; +chr22 HAVANA transcript 20905547 20905847 . + . gene_id "ENSG00000099917.13"; transcript_id "ENST00000476767.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MED15"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "MED15-027"; level 2; havana_gene "OTTHUMG00000150810.8"; havana_transcript "OTTHUMT00000320376.2"; +chr22 HAVANA transcript 21271403 21271679 . + . gene_id "ENSG00000099942.8"; transcript_id "ENST00000354336.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CRKL"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CRKL-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13785.1"; havana_gene "OTTHUMG00000150807.1"; havana_transcript "OTTHUMT00000320158.1"; +chr22 HAVANA transcript 21271403 21271679 . + . gene_id "ENSG00000099942.8"; transcript_id "ENST00000411769.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CRKL"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "CRKL-002"; level 2; tag "CCDS"; ccdsid "CCDS13785.1"; havana_gene "OTTHUMG00000150807.1"; havana_transcript "OTTHUMT00000320159.1"; +chr22 HAVANA transcript 21336280 21336301 . + . gene_id "ENSG00000099949.14"; transcript_id "ENST00000215739.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "LZTR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "LZTR1-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS33606.1"; havana_gene "OTTHUMG00000150878.1"; havana_transcript "OTTHUMT00000320387.1"; +chr22 HAVANA transcript 21336280 21336556 . + . gene_id "ENSG00000099949.14"; transcript_id "ENST00000414985.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "LZTR1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "LZTR1-005"; level 2; havana_gene "OTTHUMG00000150878.1"; havana_transcript "OTTHUMT00000320391.1"; +chr22 HAVANA transcript 21336280 21336556 . + . gene_id "ENSG00000099949.14"; transcript_id "ENST00000493460.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "LZTR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "LZTR1-006"; level 2; havana_gene "OTTHUMG00000150878.1"; havana_transcript "OTTHUMT00000320392.1"; +chr22 HAVANA transcript 21336280 21336556 . + . gene_id "ENSG00000099949.14"; transcript_id "ENST00000443265.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "LZTR1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "LZTR1-007"; level 2; havana_gene "OTTHUMG00000150878.1"; havana_transcript "OTTHUMT00000320393.1"; +chr22 ENSEMBL transcript 21336280 21336556 . + . gene_id "ENSG00000099949.14"; transcript_id "ENST00000389355.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "LZTR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "LZTR1-201"; level 3; tag "basic"; havana_gene "OTTHUMG00000150878.1"; +chr22 HAVANA transcript 21336280 21336556 . - . gene_id "ENSG00000272829.1"; transcript_id "ENST00000610278.1"; gene_type "lincRNA"; gene_status "NOVEL"; gene_name "XXbac-B135H6.18"; transcript_type "lincRNA"; transcript_status "KNOWN"; transcript_name "XXbac-B135H6.18-001"; level 2; tag "basic"; havana_gene "OTTHUMG00000186195.1"; havana_transcript "OTTHUMT00000472400.1"; +chr22 HAVANA transcript 21356161 21356573 . - . gene_id "ENSG00000184436.7"; transcript_id "ENST00000498406.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "THAP7"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "THAP7-005"; level 2; havana_gene "OTTHUMG00000150879.1"; havana_transcript "OTTHUMT00000320409.1"; +chr22 HAVANA transcript 21356376 21356573 . - . gene_id "ENSG00000184436.7"; transcript_id "ENST00000215742.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "THAP7"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "THAP7-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13787.1"; havana_gene "OTTHUMG00000150879.1"; havana_transcript "OTTHUMT00000320405.1"; +chr22 HAVANA transcript 21356161 21356573 . - . gene_id "ENSG00000184436.7"; transcript_id "ENST00000471073.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "THAP7"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "THAP7-004"; level 2; havana_gene "OTTHUMG00000150879.1"; havana_transcript "OTTHUMT00000320408.1"; +chr22 HAVANA transcript 21356486 21356573 . - . gene_id "ENSG00000184436.7"; transcript_id "ENST00000399133.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "THAP7"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "THAP7-003"; level 2; tag "alternative_5_UTR"; tag "not_organism_supported"; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13787.1"; havana_gene "OTTHUMG00000150879.1"; havana_transcript "OTTHUMT00000320407.1"; +chr22 HAVANA transcript 21356396 21356573 . - . gene_id "ENSG00000184436.7"; transcript_id "ENST00000476667.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "THAP7"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "THAP7-002"; level 2; havana_gene "OTTHUMG00000150879.1"; havana_transcript "OTTHUMT00000320406.1"; +chr22 HAVANA transcript 21356407 21356573 . - . gene_id "ENSG00000184436.7"; transcript_id "ENST00000466670.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "THAP7"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "THAP7-007"; level 2; havana_gene "OTTHUMG00000150879.1"; havana_transcript "OTTHUMT00000320411.1"; +chr22 HAVANA transcript 21356161 21356573 . - . gene_id "ENSG00000184436.7"; transcript_id "ENST00000488975.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "THAP7"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "THAP7-008"; level 2; tag "not_organism_supported"; havana_gene "OTTHUMG00000150879.1"; havana_transcript "OTTHUMT00000320412.1"; +chr22 HAVANA transcript 21356408 21356573 . - . gene_id "ENSG00000184436.7"; transcript_id "ENST00000471723.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "THAP7"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "THAP7-006"; level 2; havana_gene "OTTHUMG00000150879.1"; havana_transcript "OTTHUMT00000320410.1"; +chr22 HAVANA transcript 21356161 21356174 . + . gene_id "ENSG00000230513.1"; transcript_id "ENST00000436079.1"; gene_type "antisense"; gene_status "KNOWN"; gene_name "THAP7-AS1"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "THAP7-AS1-001"; level 2; tag "basic"; havana_gene "OTTHUMG00000150877.1"; havana_transcript "OTTHUMT00000320384.1"; +chr22 HAVANA transcript 21356161 21356210 . + . gene_id "ENSG00000230513.1"; transcript_id "ENST00000429962.1"; gene_type "antisense"; gene_status "KNOWN"; gene_name "THAP7-AS1"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "THAP7-AS1-003"; level 2; tag "basic"; havana_gene "OTTHUMG00000150877.1"; havana_transcript "OTTHUMT00000320386.1"; +chr22 HAVANA transcript 21356161 21356496 . + . gene_id "ENSG00000230513.1"; transcript_id "ENST00000452284.1"; gene_type "antisense"; gene_status "KNOWN"; gene_name "THAP7-AS1"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "THAP7-AS1-002"; level 2; tag "basic"; havana_gene "OTTHUMG00000150877.1"; havana_transcript "OTTHUMT00000320385.1"; +chr22 HAVANA transcript 21388250 21388550 . - . gene_id "ENSG00000099960.8"; transcript_id "ENST00000403586.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SLC7A4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SLC7A4-002"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS33608.1"; havana_gene "OTTHUMG00000150896.1"; havana_transcript "OTTHUMT00000320468.1"; +chr22 HAVANA transcript 21388250 21388550 . - . gene_id "ENSG00000099960.8"; transcript_id "ENST00000382932.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SLC7A4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SLC7A4-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS33608.1"; havana_gene "OTTHUMG00000150896.1"; havana_transcript "OTTHUMT00000320467.1"; +chr22 HAVANA transcript 21388250 21388550 . - . gene_id "ENSG00000099960.8"; transcript_id "ENST00000426145.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SLC7A4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SLC7A4-003"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000150896.1"; havana_transcript "OTTHUMT00000320469.1"; +chr22 ENSEMBL transcript 21390272 21390561 . - . gene_id "ENSG00000207575.1"; transcript_id "ENST00000384843.1"; gene_type "miRNA"; gene_status "KNOWN"; gene_name "MIR649"; transcript_type "miRNA"; transcript_status "KNOWN"; transcript_name "MIR649-201"; level 3; tag "basic"; +chr22 HAVANA transcript 21921847 21922018 . + . gene_id "ENSG00000185651.10"; transcript_id "ENST00000496722.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "UBE2L3"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "UBE2L3-002"; level 2; havana_gene "OTTHUMG00000150823.1"; havana_transcript "OTTHUMT00000320220.1"; +chr22 ENSEMBL transcript 21921847 21922025 . + . gene_id "ENSG00000185651.10"; transcript_id "ENST00000545681.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "UBE2L3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "UBE2L3-202"; level 3; tag "basic"; tag "CCDS"; ccdsid "CCDS58796.1"; havana_gene "OTTHUMG00000150823.1"; +chr22 HAVANA transcript 22005952 22006254 . + . gene_id "ENSG00000100023.13"; transcript_id "ENST00000498589.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PPIL2"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "PPIL2-002"; level 2; havana_gene "OTTHUMG00000030174.15"; havana_transcript "OTTHUMT00000102312.3"; +chr22 HAVANA transcript 22020326 22020328 . + . gene_id "ENSG00000100023.13"; transcript_id "ENST00000406385.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PPIL2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PPIL2-005"; level 2; tag "alternative_3_UTR"; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13793.1"; havana_gene "OTTHUMG00000030174.15"; havana_transcript "OTTHUMT00000320204.1"; +chr22 ENSEMBL transcript 22020326 22020357 . + . gene_id "ENSG00000100023.13"; transcript_id "ENST00000456792.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PPIL2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PPIL2-202"; level 3; tag "basic"; havana_gene "OTTHUMG00000030174.15"; +chr22 HAVANA transcript 22020326 22020367 . + . gene_id "ENSG00000100023.13"; transcript_id "ENST00000498109.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PPIL2"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "PPIL2-011"; level 2; havana_gene "OTTHUMG00000030174.15"; havana_transcript "OTTHUMT00000320210.1"; +chr22 ENSEMBL transcript 22005952 22006254 . + . gene_id "ENSG00000212102.1"; transcript_id "ENST00000390813.1"; gene_type "miRNA"; gene_status "KNOWN"; gene_name "MIR301B"; transcript_type "miRNA"; transcript_status "KNOWN"; transcript_name "MIR301B-201"; level 3; tag "basic"; +chr22 ENSEMBL transcript 22005952 22006254 . + . gene_id "ENSG00000207751.1"; transcript_id "ENST00000385018.1"; gene_type "miRNA"; gene_status "KNOWN"; gene_name "MIR130B"; transcript_type "miRNA"; transcript_status "KNOWN"; transcript_name "MIR130B-201"; level 3; tag "basic"; +chr22 HAVANA transcript 22222253 22222612 . - . gene_id "ENSG00000100030.10"; transcript_id "ENST00000215832.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MAPK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "MAPK1-001"; level 1; tag "basic"; tag "appris_principal"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS13795.1"; havana_gene "OTTHUMG00000030508.2"; havana_transcript "OTTHUMT00000075396.2"; +chr22 HAVANA transcript 22222253 22222612 . - . gene_id "ENSG00000100030.10"; transcript_id "ENST00000398822.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MAPK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "MAPK1-002"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13795.1"; havana_gene "OTTHUMG00000030508.2"; havana_transcript "OTTHUMT00000268186.1"; +chr22 ENSEMBL transcript 22222253 22222612 . - . gene_id "ENSG00000100030.10"; transcript_id "ENST00000544786.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MAPK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "MAPK1-201"; level 3; tag "basic"; tag "CCDS"; ccdsid "CCDS13795.1"; havana_gene "OTTHUMG00000030508.2"; +chr22 HAVANA transcript 22307210 22307355 . - . gene_id "ENSG00000100034.9"; transcript_id "ENST00000263212.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PPM1F"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PPM1F-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13796.1"; havana_gene "OTTHUMG00000150835.10"; havana_transcript "OTTHUMT00000320267.2"; +chr22 HAVANA transcript 22307204 22307355 . - . gene_id "ENSG00000100034.9"; transcript_id "ENST00000397495.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PPM1F"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "PPM1F-003"; level 2; tag "basic"; havana_gene "OTTHUMG00000150835.10"; havana_transcript "OTTHUMT00000320269.1"; +chr22 HAVANA transcript 22307194 22307355 . - . gene_id "ENSG00000100034.9"; transcript_id "ENST00000497072.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PPM1F"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "PPM1F-009"; level 2; havana_gene "OTTHUMG00000150835.10"; havana_transcript "OTTHUMT00000320275.1"; +chr22 HAVANA transcript 22337214 22337385 . - . gene_id "ENSG00000100038.15"; transcript_id "ENST00000357179.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TOP3B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TOP3B-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13797.1"; havana_gene "OTTHUMG00000167438.1"; havana_transcript "OTTHUMT00000320249.1"; +chr22 HAVANA transcript 22337188 22337385 . - . gene_id "ENSG00000100038.15"; transcript_id "ENST00000457179.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TOP3B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "TOP3B-004"; level 2; havana_gene "OTTHUMG00000167438.1"; havana_transcript "OTTHUMT00000320252.1"; +chr22 HAVANA transcript 22337148 22337385 . - . gene_id "ENSG00000100038.15"; transcript_id "ENST00000398793.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TOP3B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TOP3B-003"; level 2; tag "alternative_5_UTR"; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13797.1"; havana_gene "OTTHUMG00000167438.1"; havana_transcript "OTTHUMT00000320251.1"; +chr22 HAVANA transcript 22337188 22337385 . - . gene_id "ENSG00000100038.15"; transcript_id "ENST00000444502.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TOP3B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "TOP3B-002"; level 2; havana_gene "OTTHUMG00000167438.1"; havana_transcript "OTTHUMT00000320250.1"; +chr22 ENSEMBL transcript 22337164 22337385 . - . gene_id "ENSG00000100038.15"; transcript_id "ENST00000413067.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TOP3B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TOP3B-201"; level 3; tag "basic"; havana_gene "OTTHUMG00000167438.1"; +chr22 HAVANA transcript 22337178 22337385 . - . gene_id "ENSG00000100038.15"; transcript_id "ENST00000424393.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TOP3B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TOP3B-012"; level 2; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000167438.1"; havana_transcript "OTTHUMT00000320260.11"; +chr22 HAVANA transcript 22337164 22337385 . - . gene_id "ENSG00000100038.15"; transcript_id "ENST00000437929.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TOP3B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TOP3B-013"; level 2; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000167438.1"; havana_transcript "OTTHUMT00000320261.1"; +chr22 HAVANA transcript 22337211 22337385 . - . gene_id "ENSG00000100038.15"; transcript_id "ENST00000430142.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TOP3B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TOP3B-007"; level 2; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000167438.1"; havana_transcript "OTTHUMT00000320255.1"; +chr22 HAVANA transcript 22337164 22337385 . - . gene_id "ENSG00000100038.15"; transcript_id "ENST00000456075.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TOP3B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TOP3B-009"; level 2; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000167438.1"; havana_transcript "OTTHUMT00000320257.1"; +chr22 HAVANA transcript 22337185 22337385 . - . gene_id "ENSG00000100038.15"; transcript_id "ENST00000449704.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TOP3B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TOP3B-011"; level 2; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000167438.1"; havana_transcript "OTTHUMT00000320259.1"; +chr22 HAVANA transcript 22337191 22337385 . - . gene_id "ENSG00000100038.15"; transcript_id "ENST00000437103.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TOP3B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TOP3B-010"; level 2; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000167438.1"; havana_transcript "OTTHUMT00000320258.1"; +chr22 HAVANA transcript 22337171 22337385 . - . gene_id "ENSG00000100038.15"; transcript_id "ENST00000434517.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TOP3B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TOP3B-008"; level 2; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000167438.1"; havana_transcript "OTTHUMT00000320256.1"; +chr22 HAVANA transcript 22384965 22385331 . + . gene_id "ENSG00000211637.2"; transcript_id "ENST00000390282.2"; gene_type "IG_V_gene"; gene_status "KNOWN"; gene_name "IGLV4-69"; transcript_type "IG_V_gene"; transcript_status "KNOWN"; transcript_name "IGLV4-69-001"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; tag "basic"; tag "appris_principal"; havana_gene "OTTHUMG00000150857.1"; havana_transcript "OTTHUMT00000320334.1"; +chr22 HAVANA transcript 22385143 22385580 . + . gene_id "ENSG00000254355.1"; transcript_id "ENST00000519525.1"; gene_type "IG_V_pseudogene"; gene_status "KNOWN"; gene_name "IGLVI-68"; transcript_type "IG_V_pseudogene"; transcript_status "KNOWN"; transcript_name "IGLVI-68-001"; level 2; havana_gene "OTTHUMG00000150853.1"; havana_transcript "OTTHUMT00000320330.1"; +chr22 HAVANA transcript 22396417 22396892 . + . gene_id "ENSG00000253794.1"; transcript_id "ENST00000519446.1"; gene_type "IG_V_pseudogene"; gene_status "KNOWN"; gene_name "IGLV10-67"; transcript_type "IG_V_pseudogene"; transcript_status "KNOWN"; transcript_name "IGLV10-67-001"; level 2; havana_gene "OTTHUMG00000150849.1"; havana_transcript "OTTHUMT00000320326.1"; +chr22 HAVANA transcript 22424112 22424412 . + . gene_id "ENSG00000254161.1"; transcript_id "ENST00000517313.1"; gene_type "IG_V_pseudogene"; gene_status "KNOWN"; gene_name "IGLVIV-65"; transcript_type "IG_V_pseudogene"; transcript_status "KNOWN"; transcript_name "IGLVIV-65-001"; level 2; havana_gene "OTTHUMG00000150861.1"; havana_transcript "OTTHUMT00000320338.1"; +chr22 HAVANA transcript 22511234 22511510 . + . gene_id "ENSG00000233720.1"; transcript_id "ENST00000440562.1"; gene_type "pseudogene"; gene_status "KNOWN"; gene_name "LL22NC03-30E12.11"; transcript_type "unprocessed_pseudogene"; transcript_status "KNOWN"; transcript_name "LL22NC03-30E12.11-001"; level 2; ont "PGO:0000005"; havana_gene "OTTHUMG00000150856.2"; havana_transcript "OTTHUMT00000320333.2"; +chr22 HAVANA transcript 22549771 22550112 . + . gene_id "ENSG00000211640.3"; transcript_id "ENST00000390285.3"; gene_type "IG_V_gene"; gene_status "KNOWN"; gene_name "IGLV6-57"; transcript_type "IG_V_gene"; transcript_status "KNOWN"; transcript_name "IGLV6-57-001"; level 2; tag "mRNA_end_NF"; tag "basic"; tag "appris_principal"; havana_gene "OTTHUMG00000150996.3"; havana_transcript "OTTHUMT00000320861.3"; +chr22 HAVANA transcript 22676393 22676669 . + . gene_id "ENSG00000211644.2"; transcript_id "ENST00000390290.2"; gene_type "IG_V_gene"; gene_status "KNOWN"; gene_name "IGLV1-51"; transcript_type "IG_V_gene"; transcript_status "KNOWN"; transcript_name "IGLV1-51-001"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; tag "basic"; tag "appris_principal"; havana_gene "OTTHUMG00000151035.1"; havana_transcript "OTTHUMT00000321094.1"; +chr22 HAVANA transcript 22959163 22959488 . + . gene_id "ENSG00000253329.1"; transcript_id "ENST00000524362.1"; gene_type "IG_V_pseudogene"; gene_status "KNOWN"; gene_name "IGLV3-30"; transcript_type "IG_V_pseudogene"; transcript_status "KNOWN"; transcript_name "IGLV3-30-001"; level 2; havana_gene "OTTHUMG00000151182.1"; havana_transcript "OTTHUMT00000321668.1"; +chr22 HAVANA transcript 23199513 23199825 . + . gene_id "ENSG00000226420.1"; transcript_id "ENST00000432300.1"; gene_type "IG_V_pseudogene"; gene_status "KNOWN"; gene_name "IGLV3-4"; transcript_type "IG_V_pseudogene"; transcript_status "KNOWN"; transcript_name "IGLV3-4-001"; level 2; havana_gene "OTTHUMG00000151238.1"; havana_transcript "OTTHUMT00000321843.1"; +chr22 ENSEMBL transcript 23227206 23227555 . + . gene_id "ENSG00000264824.1"; transcript_id "ENST00000577998.1"; gene_type "miRNA"; gene_status "KNOWN"; gene_name "hsa-mir-5571"; transcript_type "miRNA"; transcript_status "KNOWN"; transcript_name "hsa-mir-5571.1-201"; level 3; tag "basic"; +chr22 HAVANA transcript 23624043 23624319 . + . gene_id "ENSG00000186716.15"; transcript_id "ENST00000487968.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BCR"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "BCR-012"; level 2; havana_gene "OTTHUMG00000150655.3"; havana_transcript "OTTHUMT00000320293.1"; +chr22 HAVANA transcript 23624043 23624319 . + . gene_id "ENSG00000186716.15"; transcript_id "ENST00000466076.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BCR"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "BCR-015"; level 2; havana_gene "OTTHUMG00000150655.3"; havana_transcript "OTTHUMT00000320296.1"; +chr22 HAVANA transcript 23667480 23667780 . + . gene_id "ENSG00000236611.1"; transcript_id "ENST00000450776.1"; gene_type "lincRNA"; gene_status "NOVEL"; gene_name "AP000343.2"; transcript_type "lincRNA"; transcript_status "KNOWN"; transcript_name "AP000343.2-001"; level 1; tag "basic"; tag "exp_conf"; havana_gene "OTTHUMG00000150838.1"; havana_transcript "OTTHUMT00000320286.1"; +chr22 HAVANA transcript 24059509 24059613 . - . gene_id "ENSG00000228315.7"; transcript_id "ENST00000452737.1"; gene_type "processed_transcript"; gene_status "NOVEL"; gene_name "GUSBP11"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "GUSBP11-004"; level 2; tag "non_canonical_genome_sequence_error"; tag "readthrough_transcript"; havana_gene "OTTHUMG00000150709.2"; havana_transcript "OTTHUMT00000319694.1"; +chr22 HAVANA transcript 24059509 24059613 . - . gene_id "ENSG00000228315.7"; transcript_id "ENST00000451837.1"; gene_type "processed_transcript"; gene_status "NOVEL"; gene_name "GUSBP11"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "GUSBP11-006"; level 2; tag "non_canonical_genome_sequence_error"; tag "readthrough_transcript"; havana_gene "OTTHUMG00000150709.2"; havana_transcript "OTTHUMT00000471971.1"; +chr22 HAVANA transcript 24059544 24059613 . - . gene_id "ENSG00000228315.7"; transcript_id "ENST00000422506.1"; gene_type "processed_transcript"; gene_status "NOVEL"; gene_name "GUSBP11"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "GUSBP11-001"; level 2; tag "non_canonical_genome_sequence_error"; tag "readthrough_transcript"; havana_gene "OTTHUMG00000150709.2"; havana_transcript "OTTHUMT00000471972.1"; +chr22 HAVANA transcript 24059544 24059613 . - . gene_id "ENSG00000228315.7"; transcript_id "ENST00000445682.1"; gene_type "processed_transcript"; gene_status "NOVEL"; gene_name "GUSBP11"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "GUSBP11-002"; level 2; tag "non_canonical_TEC"; tag "readthrough_transcript"; havana_gene "OTTHUMG00000150709.2"; havana_transcript "OTTHUMT00000471973.1"; +chr22 HAVANA transcript 24059535 24059613 . - . gene_id "ENSG00000273000.1"; transcript_id "ENST00000421064.1"; gene_type "processed_transcript"; gene_status "NOVEL"; gene_name "KB-1572G7.2"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "KB-1572G7.2-001"; level 2; tag "non_canonical_TEC"; tag "basic"; tag "readthrough_transcript"; havana_gene "OTTHUMG00000186001.1"; havana_transcript "OTTHUMT00000471974.1"; +chr22 HAVANA transcript 24059483 24059613 . - . gene_id "ENSG00000272578.1"; transcript_id "ENST00000435868.1"; gene_type "pseudogene"; gene_status "KNOWN"; gene_name "AP000347.2"; transcript_type "transcribed_unprocessed_pseudogene"; transcript_status "KNOWN"; transcript_name "AP000347.2-008"; level 1; ont "PGO:0000005"; ont "PGO:0000019"; tag "pseudo_consens"; havana_gene "OTTHUMG00000186353.2"; havana_transcript "OTTHUMT00000319698.1"; +chr22 HAVANA transcript 24059455 24059613 . - . gene_id "ENSG00000272578.1"; transcript_id "ENST00000432595.1"; gene_type "pseudogene"; gene_status "KNOWN"; gene_name "AP000347.2"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "AP000347.2-018"; level 2; tag "non_canonical_genome_sequence_error"; tag "mRNA_start_NF"; tag "mRNA_end_NF"; havana_gene "OTTHUMG00000186353.2"; havana_transcript "OTTHUMT00000320343.1"; +chr22 HAVANA transcript 24059515 24059613 . - . gene_id "ENSG00000272578.1"; transcript_id "ENST00000444220.2"; gene_type "pseudogene"; gene_status "KNOWN"; gene_name "AP000347.2"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "AP000347.2-020"; level 2; havana_gene "OTTHUMG00000186353.2"; havana_transcript "OTTHUMT00000473096.1"; +chr22 HAVANA transcript 24059544 24059613 . - . gene_id "ENSG00000272578.1"; transcript_id "ENST00000437294.1"; gene_type "pseudogene"; gene_status "KNOWN"; gene_name "AP000347.2"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "AP000347.2-009"; level 2; havana_gene "OTTHUMG00000186353.2"; havana_transcript "OTTHUMT00000319699.1"; +chr22 HAVANA transcript 24110064 24110251 . - . gene_id "ENSG00000250479.4"; transcript_id "ENST00000520222.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CHCHD10"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "CHCHD10-005"; level 2; tag "basic"; havana_gene "OTTHUMG00000150736.2"; havana_transcript "OTTHUMT00000381505.1"; +chr22 HAVANA transcript 24110130 24110251 . - . gene_id "ENSG00000250479.4"; transcript_id "ENST00000401675.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CHCHD10"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "CHCHD10-002"; level 2; tag "basic"; tag "appris_principal"; havana_gene "OTTHUMG00000150736.2"; havana_transcript "OTTHUMT00000319871.1"; +chr22 HAVANA transcript 24109951 24110251 . - . gene_id "ENSG00000250479.4"; transcript_id "ENST00000523865.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CHCHD10"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "CHCHD10-004"; level 2; havana_gene "OTTHUMG00000150736.2"; havana_transcript "OTTHUMT00000381507.1"; +chr22 HAVANA transcript 24110108 24110251 . - . gene_id "ENSG00000250479.4"; transcript_id "ENST00000517886.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CHCHD10"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "CHCHD10-003"; level 2; havana_gene "OTTHUMG00000150736.2"; havana_transcript "OTTHUMT00000381508.1"; +chr22 HAVANA transcript 24109951 24110251 . + . gene_id "ENSG00000099953.5"; transcript_id "ENST00000465385.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MMP11"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "MMP11-003"; level 2; havana_gene "OTTHUMG00000150742.2"; havana_transcript "OTTHUMT00000319893.1"; +chr22 HAVANA transcript 24109951 24110251 . + . gene_id "ENSG00000099953.5"; transcript_id "ENST00000477567.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MMP11"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "MMP11-005"; level 2; tag "basic"; havana_gene "OTTHUMG00000150742.2"; havana_transcript "OTTHUMT00000319895.1"; +chr22 HAVANA transcript 24109951 24110251 . + . gene_id "ENSG00000099953.5"; transcript_id "ENST00000489582.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MMP11"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "MMP11-006"; level 2; havana_gene "OTTHUMG00000150742.2"; havana_transcript "OTTHUMT00000319896.1"; +chr22 HAVANA transcript 24199968 24200244 . - . gene_id "ENSG00000272973.1"; transcript_id "ENST00000609825.1"; gene_type "antisense"; gene_status "NOVEL"; gene_name "KB-1125A3.11"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "KB-1125A3.11-001"; level 2; tag "basic"; havana_gene "OTTHUMG00000186120.1"; havana_transcript "OTTHUMT00000472288.1"; +chr22 HAVANA transcript 24199968 24200061 . + . gene_id "ENSG00000133460.15"; transcript_id "ENST00000491948.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SLC2A11"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "SLC2A11-016"; level 2; havana_gene "OTTHUMG00000166469.2"; havana_transcript "OTTHUMT00000320031.1"; +chr22 HAVANA transcript 24199968 24200081 . + . gene_id "ENSG00000133460.15"; transcript_id "ENST00000436643.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SLC2A11"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "SLC2A11-017"; level 2; havana_gene "OTTHUMG00000166469.2"; havana_transcript "OTTHUMT00000320032.2"; +chr22 HAVANA transcript 24199968 24200105 . + . gene_id "ENSG00000133460.15"; transcript_id "ENST00000405340.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SLC2A11"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "SLC2A11-003"; level 2; tag "not_organism_supported"; havana_gene "OTTHUMG00000166469.2"; havana_transcript "OTTHUMT00000320018.1"; +chr22 HAVANA transcript 24199968 24200147 . + . gene_id "ENSG00000133460.15"; transcript_id "ENST00000461809.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SLC2A11"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "SLC2A11-008"; level 2; havana_gene "OTTHUMG00000166469.2"; havana_transcript "OTTHUMT00000320023.1"; +chr22 HAVANA transcript 24199968 24200149 . + . gene_id "ENSG00000133460.15"; transcript_id "ENST00000316185.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SLC2A11"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SLC2A11-004"; level 2; tag "basic"; tag "CCDS"; ccdsid "CCDS33616.1"; havana_gene "OTTHUMG00000166469.2"; havana_transcript "OTTHUMT00000320019.1"; +chr22 HAVANA transcript 24236032 24236190 . + . gene_id "ENSG00000240972.1"; transcript_id "ENST00000215754.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MIF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "MIF-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13819.1"; havana_gene "OTTHUMG00000150773.2"; havana_transcript "OTTHUMT00000320009.1"; +chr22 HAVANA transcript 24236032 24236308 . + . gene_id "ENSG00000240972.1"; transcript_id "ENST00000465752.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MIF"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "MIF-002"; level 2; havana_gene "OTTHUMG00000150773.2"; havana_transcript "OTTHUMT00000320010.2"; +chr22 HAVANA transcript 24236496 24236636 . + . gene_id "ENSG00000240972.1"; transcript_id "ENST00000465752.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MIF"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "MIF-002"; level 2; havana_gene "OTTHUMG00000150773.2"; havana_transcript "OTTHUMT00000320010.2"; +chr22 HAVANA transcript 24236032 24236308 . + . gene_id "ENSG00000240972.1"; transcript_id "ENST00000498385.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MIF"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "MIF-003"; level 2; havana_gene "OTTHUMG00000150773.2"; havana_transcript "OTTHUMT00000320011.2"; +chr22 HAVANA transcript 24236496 24236772 . + . gene_id "ENSG00000240972.1"; transcript_id "ENST00000498385.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MIF"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "MIF-003"; level 2; havana_gene "OTTHUMG00000150773.2"; havana_transcript "OTTHUMT00000320011.2"; +chr22 HAVANA transcript 24407435 24407641 . + . gene_id "ENSG00000099991.12"; transcript_id "ENST00000454754.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CABIN1"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "CABIN1-013"; level 2; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000150797.4"; havana_transcript "OTTHUMT00000320278.2"; +chr22 HAVANA transcript 24407435 24407764 . + . gene_id "ENSG00000099991.12"; transcript_id "ENST00000263119.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CABIN1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CABIN1-014"; level 2; tag "alternative_5_UTR"; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13823.1"; havana_gene "OTTHUMG00000150797.4"; havana_transcript "OTTHUMT00000340949.1"; +chr22 HAVANA transcript 24407435 24407785 . + . gene_id "ENSG00000099991.12"; transcript_id "ENST00000405822.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CABIN1"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "CABIN1-002"; level 1; tag "basic"; tag "exp_conf"; havana_gene "OTTHUMG00000150797.4"; havana_transcript "OTTHUMT00000320162.2"; +chr22 HAVANA transcript 24407435 24407785 . + . gene_id "ENSG00000099991.12"; transcript_id "ENST00000445422.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CABIN1"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "CABIN1-003"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000150797.4"; havana_transcript "OTTHUMT00000320163.2"; +chr22 HAVANA transcript 24407435 24407785 . + . gene_id "ENSG00000099991.12"; transcript_id "ENST00000398319.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CABIN1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CABIN1-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13823.1"; havana_gene "OTTHUMG00000150797.4"; havana_transcript "OTTHUMT00000320161.2"; +chr22 HAVANA transcript 24666709 24667037 . - . gene_id "ENSG00000215464.4"; transcript_id "ENST00000396982.3"; gene_type "pseudogene"; gene_status "KNOWN"; gene_name "AP000354.2"; transcript_type "processed_pseudogene"; transcript_status "KNOWN"; transcript_name "AP000354.2-001"; level 1; ont "PGO:0000004"; tag "pseudo_consens"; havana_gene "OTTHUMG00000150770.2"; havana_transcript "OTTHUMT00000320006.2"; +chr22 ENSEMBL transcript 24666709 24666785 . + . gene_id "ENSG00000100014.15"; transcript_id "ENST00000437398.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SPECC1L"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SPECC1L-201"; level 3; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS33619.1"; havana_gene "OTTHUMG00000171450.4"; +chr22 HAVANA transcript 24666709 24666789 . + . gene_id "ENSG00000100014.15"; transcript_id "ENST00000421374.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SPECC1L"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SPECC1L-002"; level 2; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000171450.4"; havana_transcript "OTTHUMT00000319987.1"; +chr22 HAVANA transcript 24666709 24666807 . + . gene_id "ENSG00000100014.15"; transcript_id "ENST00000314328.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SPECC1L"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SPECC1L-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS33619.1"; havana_gene "OTTHUMG00000171450.4"; havana_transcript "OTTHUMT00000319986.2"; +chr22 HAVANA transcript 24666709 24666850 . + . gene_id "ENSG00000100014.15"; transcript_id "ENST00000416735.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SPECC1L"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "SPECC1L-004"; level 2; tag "NMD_likely_if_extended"; tag "basic"; havana_gene "OTTHUMG00000171450.4"; havana_transcript "OTTHUMT00000319989.2"; +chr22 HAVANA transcript 24666709 24666850 . + . gene_id "ENSG00000100014.15"; transcript_id "ENST00000541492.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SPECC1L"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SPECC1L-006"; level 2; tag "basic"; tag "CCDS"; ccdsid "CCDS58797.1"; havana_gene "OTTHUMG00000171450.4"; havana_transcript "OTTHUMT00000472823.1"; +chr22 HAVANA transcript 24666709 24666865 . + . gene_id "ENSG00000258555.2"; transcript_id "ENST00000358654.2"; gene_type "protein_coding"; gene_status "NOVEL"; gene_name "SPECC1L-ADORA2A"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "SPECC1L-ADORA2A-001"; level 2; tag "basic"; tag "appris_principal"; tag "readthrough_transcript"; havana_gene "OTTHUMG00000150762.4"; havana_transcript "OTTHUMT00000413446.1"; +chr22 HAVANA transcript 24910733 24911115 . + . gene_id "ENSG00000228923.1"; transcript_id "ENST00000432032.1"; gene_type "antisense"; gene_status "NOVEL"; gene_name "AP000355.2"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "AP000355.2-001"; level 2; tag "basic"; havana_gene "OTTHUMG00000150750.1"; havana_transcript "OTTHUMT00000319934.1"; +chr22 HAVANA transcript 24912238 24912475 . + . gene_id "ENSG00000228923.1"; transcript_id "ENST00000432032.1"; gene_type "antisense"; gene_status "NOVEL"; gene_name "AP000355.2"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "AP000355.2-001"; level 2; tag "basic"; havana_gene "OTTHUMG00000150750.1"; havana_transcript "OTTHUMT00000319934.1"; +chr22 HAVANA transcript 24951786 24952062 . - . gene_id "ENSG00000138867.12"; transcript_id "ENST00000407471.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GUCD1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GUCD1-001"; level 2; tag "basic"; tag "appris_candidate_longest"; tag "CCDS"; ccdsid "CCDS33621.1"; havana_gene "OTTHUMG00000150728.2"; havana_transcript "OTTHUMT00000319819.1"; +chr22 HAVANA transcript 24951786 24952062 . - . gene_id "ENSG00000138867.12"; transcript_id "ENST00000435822.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GUCD1"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "GUCD1-002"; level 2; tag "basic"; tag "appris_candidate"; havana_gene "OTTHUMG00000150728.2"; havana_transcript "OTTHUMT00000319820.1"; +chr22 HAVANA transcript 24951786 24952062 . - . gene_id "ENSG00000138867.12"; transcript_id "ENST00000398245.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GUCD1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GUCD1-004"; level 2; havana_gene "OTTHUMG00000150728.2"; havana_transcript "OTTHUMT00000319822.2"; +chr22 HAVANA transcript 24951904 24952062 . - . gene_id "ENSG00000138867.12"; transcript_id "ENST00000404664.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GUCD1"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "GUCD1-003"; level 1; tag "basic"; tag "exp_conf"; havana_gene "OTTHUMG00000150728.2"; havana_transcript "OTTHUMT00000319821.1"; +chr22 HAVANA transcript 24951786 24952062 . - . gene_id "ENSG00000138867.12"; transcript_id "ENST00000447813.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GUCD1"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "GUCD1-009"; level 2; tag "basic"; havana_gene "OTTHUMG00000150728.2"; havana_transcript "OTTHUMT00000319827.1"; +chr22 HAVANA transcript 24951786 24952062 . - . gene_id "ENSG00000138867.12"; transcript_id "ENST00000402766.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GUCD1"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "GUCD1-008"; level 2; tag "basic"; havana_gene "OTTHUMG00000150728.2"; havana_transcript "OTTHUMT00000319826.1"; +chr22 HAVANA transcript 24951828 24952062 . - . gene_id "ENSG00000138867.12"; transcript_id "ENST00000407973.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GUCD1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GUCD1-005"; level 2; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000150728.2"; havana_transcript "OTTHUMT00000319823.1"; +chr22 HAVANA transcript 24951786 24952062 . - . gene_id "ENSG00000138867.12"; transcript_id "ENST00000468170.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GUCD1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "GUCD1-006"; level 2; havana_gene "OTTHUMG00000150728.2"; havana_transcript "OTTHUMT00000319824.1"; +chr22 HAVANA transcript 24951786 24951925 . + . gene_id "ENSG00000100028.7"; transcript_id "ENST00000468770.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SNRPD3"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "SNRPD3-002"; level 2; havana_gene "OTTHUMG00000150727.1"; havana_transcript "OTTHUMT00000319814.1"; +chr22 HAVANA transcript 24951786 24951974 . + . gene_id "ENSG00000100028.7"; transcript_id "ENST00000402849.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SNRPD3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SNRPD3-003"; level 2; tag "basic"; havana_gene "OTTHUMG00000150727.1"; havana_transcript "OTTHUMT00000319815.1"; +chr22 HAVANA transcript 24951786 24951976 . + . gene_id "ENSG00000100028.7"; transcript_id "ENST00000404603.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SNRPD3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "SNRPD3-005"; level 1; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS13828.1"; havana_gene "OTTHUMG00000150727.1"; havana_transcript "OTTHUMT00000319817.1"; +chr22 HAVANA transcript 24951786 24951999 . + . gene_id "ENSG00000100028.7"; transcript_id "ENST00000439775.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SNRPD3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "SNRPD3-004"; level 2; havana_gene "OTTHUMG00000150727.1"; havana_transcript "OTTHUMT00000319816.1"; +chr22 HAVANA transcript 25003723 25004023 . + . gene_id "ENSG00000100031.14"; transcript_id "ENST00000425895.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GGT1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GGT1-006"; level 2; havana_gene "OTTHUMG00000030859.31"; havana_transcript "OTTHUMT00000319111.3"; +chr22 HAVANA transcript 25959673 25960030 . + . gene_id "ENSG00000100077.10"; transcript_id "ENST00000324198.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ADRBK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ADRBK2-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13832.1"; havana_gene "OTTHUMG00000150280.5"; havana_transcript "OTTHUMT00000317296.4"; +chr22 HAVANA transcript 25959673 25960030 . + . gene_id "ENSG00000100077.10"; transcript_id "ENST00000455558.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ADRBK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ADRBK2-002"; level 2; tag "not_organism_supported"; tag "mRNA_start_NF"; tag "cds_start_NF"; havana_gene "OTTHUMG00000150280.5"; havana_transcript "OTTHUMT00000320369.2"; +chr22 HAVANA transcript 26165474 26165774 . + . gene_id "ENSG00000133454.11"; transcript_id "ENST00000418374.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MYO18B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "MYO18B-005"; level 2; havana_gene "OTTHUMG00000151129.2"; havana_transcript "OTTHUMT00000400693.1"; +chr22 HAVANA transcript 26824817 26825093 . + . gene_id "ENSG00000128203.6"; transcript_id "ENST00000215906.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ASPHD2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ASPHD2-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13834.2"; havana_gene "OTTHUMG00000150884.1"; havana_transcript "OTTHUMT00000320422.1"; +chr22 HAVANA transcript 26879779 26879982 . - . gene_id "ENSG00000100099.16"; transcript_id "ENST00000398145.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HPS4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HPS4-005"; level 2; tag "alternative_5_UTR"; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13835.1"; havana_gene "OTTHUMG00000030459.7"; havana_transcript "OTTHUMT00000320778.1"; +chr22 HAVANA transcript 26879762 26879982 . - . gene_id "ENSG00000100099.16"; transcript_id "ENST00000336873.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HPS4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HPS4-006"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13835.1"; havana_gene "OTTHUMG00000030459.7"; havana_transcript "OTTHUMT00000320779.2"; +chr22 HAVANA transcript 26879803 26879982 . - . gene_id "ENSG00000100099.16"; transcript_id "ENST00000439453.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HPS4"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "HPS4-002"; level 2; havana_gene "OTTHUMG00000030459.7"; havana_transcript "OTTHUMT00000257730.2"; +chr22 HAVANA transcript 26879804 26879982 . - . gene_id "ENSG00000100099.16"; transcript_id "ENST00000466781.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HPS4"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "HPS4-004"; level 2; havana_gene "OTTHUMG00000030459.7"; havana_transcript "OTTHUMT00000320777.1"; +chr22 HAVANA transcript 26879750 26879982 . - . gene_id "ENSG00000100099.16"; transcript_id "ENST00000422379.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HPS4"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "HPS4-022"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000030459.7"; havana_transcript "OTTHUMT00000377675.2"; +chr22 HAVANA transcript 26879803 26879982 . - . gene_id "ENSG00000100099.16"; transcript_id "ENST00000483631.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HPS4"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "HPS4-014"; level 2; havana_gene "OTTHUMG00000030459.7"; havana_transcript "OTTHUMT00000320787.1"; +chr22 HAVANA transcript 26879803 26879982 . - . gene_id "ENSG00000100099.16"; transcript_id "ENST00000479064.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HPS4"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "HPS4-012"; level 2; havana_gene "OTTHUMG00000030459.7"; havana_transcript "OTTHUMT00000320785.1"; +chr22 HAVANA transcript 26879795 26879982 . - . gene_id "ENSG00000100099.16"; transcript_id "ENST00000473782.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HPS4"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "HPS4-013"; level 2; havana_gene "OTTHUMG00000030459.7"; havana_transcript "OTTHUMT00000320786.1"; +chr22 HAVANA transcript 26879706 26879842 . + . gene_id "ENSG00000100104.8"; transcript_id "ENST00000215917.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SRRD"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SRRD-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS42995.1"; havana_gene "OTTHUMG00000150885.3"; havana_transcript "OTTHUMT00000320423.2"; +chr22 HAVANA transcript 26908472 26908585 . - . gene_id "ENSG00000100109.12"; transcript_id "ENST00000407690.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TFIP11"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TFIP11-002"; level 2; tag "alternative_5_UTR"; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13838.1"; havana_gene "OTTHUMG00000150883.2"; havana_transcript "OTTHUMT00000320750.1"; +chr22 HAVANA transcript 26908344 26908585 . - . gene_id "ENSG00000100109.12"; transcript_id "ENST00000407431.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TFIP11"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TFIP11-003"; level 2; tag "alternative_5_UTR"; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13838.1"; havana_gene "OTTHUMG00000150883.2"; havana_transcript "OTTHUMT00000320751.1"; +chr22 HAVANA transcript 26908463 26908585 . - . gene_id "ENSG00000100109.12"; transcript_id "ENST00000407148.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TFIP11"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TFIP11-004"; level 2; tag "alternative_5_UTR"; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13838.1"; havana_gene "OTTHUMG00000150883.2"; havana_transcript "OTTHUMT00000320752.1"; +chr22 HAVANA transcript 26908466 26908585 . - . gene_id "ENSG00000100109.12"; transcript_id "ENST00000405938.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TFIP11"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TFIP11-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13838.1"; havana_gene "OTTHUMG00000150883.2"; havana_transcript "OTTHUMT00000320421.2"; +chr22 HAVANA transcript 26908472 26908585 . - . gene_id "ENSG00000100109.12"; transcript_id "ENST00000479489.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TFIP11"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "TFIP11-012"; level 2; havana_gene "OTTHUMG00000150883.2"; havana_transcript "OTTHUMT00000320760.1"; +chr22 HAVANA transcript 26908445 26908585 . - . gene_id "ENSG00000100109.12"; transcript_id "ENST00000472918.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TFIP11"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "TFIP11-008"; level 2; havana_gene "OTTHUMG00000150883.2"; havana_transcript "OTTHUMT00000320756.1"; +chr22 HAVANA transcript 26908427 26908585 . - . gene_id "ENSG00000100109.12"; transcript_id "ENST00000455080.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TFIP11"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TFIP11-011"; level 2; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000150883.2"; havana_transcript "OTTHUMT00000320759.1"; +chr22 HAVANA transcript 26908445 26908585 . - . gene_id "ENSG00000100109.12"; transcript_id "ENST00000418876.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TFIP11"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TFIP11-009"; level 2; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000150883.2"; havana_transcript "OTTHUMT00000320757.1"; +chr22 HAVANA transcript 26908463 26908585 . - . gene_id "ENSG00000100109.12"; transcript_id "ENST00000420242.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TFIP11"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TFIP11-010"; level 2; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000150883.2"; havana_transcript "OTTHUMT00000320758.1"; +chr22 HAVANA transcript 26908456 26908585 . - . gene_id "ENSG00000100109.12"; transcript_id "ENST00000440258.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TFIP11"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TFIP11-006"; level 2; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000150883.2"; havana_transcript "OTTHUMT00000320754.1"; +chr22 HAVANA transcript 26908462 26908585 . - . gene_id "ENSG00000100109.12"; transcript_id "ENST00000464449.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TFIP11"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "TFIP11-007"; level 2; havana_gene "OTTHUMG00000150883.2"; havana_transcript "OTTHUMT00000320755.1"; +chr22 HAVANA transcript 26908309 26908502 . + . gene_id "ENSG00000261188.1"; transcript_id "ENST00000566814.1"; gene_type "antisense"; gene_status "NOVEL"; gene_name "CTA-445C9.14"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "CTA-445C9.14-001"; level 2; tag "basic"; havana_gene "OTTHUMG00000172738.1"; havana_transcript "OTTHUMT00000420338.1"; +chr22 HAVANA transcript 26908309 26908520 . + . gene_id "ENSG00000261188.1"; transcript_id "ENST00000565764.1"; gene_type "antisense"; gene_status "NOVEL"; gene_name "CTA-445C9.14"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "CTA-445C9.14-002"; level 2; tag "basic"; havana_gene "OTTHUMG00000172738.1"; havana_transcript "OTTHUMT00000420339.1"; +chr22 HAVANA transcript 26986153 26986453 . - . gene_id "ENSG00000128294.11"; transcript_id "ENST00000338754.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TPST2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TPST2-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13839.1"; havana_gene "OTTHUMG00000150987.3"; havana_transcript "OTTHUMT00000320820.3"; +chr22 HAVANA transcript 26986153 26986453 . - . gene_id "ENSG00000128294.11"; transcript_id "ENST00000442495.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TPST2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TPST2-006"; level 2; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000150987.3"; havana_transcript "OTTHUMT00000320825.1"; +chr22 HAVANA transcript 26986153 26986453 . - . gene_id "ENSG00000128294.11"; transcript_id "ENST00000440953.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TPST2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TPST2-005"; level 2; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000150987.3"; havana_transcript "OTTHUMT00000320824.1"; +chr22 HAVANA transcript 26986153 26986453 . - . gene_id "ENSG00000128294.11"; transcript_id "ENST00000450022.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TPST2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TPST2-004"; level 2; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000150987.3"; havana_transcript "OTTHUMT00000320823.1"; +chr22 HAVANA transcript 27068618 27069209 . - . gene_id "ENSG00000206028.1"; transcript_id "ENST00000382641.1"; gene_type "lincRNA"; gene_status "NOVEL"; gene_name "CTA-373H7.7"; transcript_type "lincRNA"; transcript_status "KNOWN"; transcript_name "CTA-373H7.7-001"; level 1; tag "basic"; tag "exp_conf"; havana_gene "OTTHUMG00000150982.1"; havana_transcript "OTTHUMT00000320776.1"; +chr22 HAVANA transcript 27067501 27067777 . + . gene_id "ENSG00000244625.1"; transcript_id "ENST00000444388.1"; gene_type "lincRNA"; gene_status "NOVEL"; gene_name "CTA-211A9.5"; transcript_type "lincRNA"; transcript_status "KNOWN"; transcript_name "CTA-211A9.5-002"; level 2; havana_gene "OTTHUMG00000150981.3"; havana_transcript "OTTHUMT00000320769.1"; +chr22 HAVANA transcript 27068507 27068729 . + . gene_id "ENSG00000244625.1"; transcript_id "ENST00000444388.1"; gene_type "lincRNA"; gene_status "NOVEL"; gene_name "CTA-211A9.5"; transcript_type "lincRNA"; transcript_status "KNOWN"; transcript_name "CTA-211A9.5-002"; level 2; havana_gene "OTTHUMG00000150981.3"; havana_transcript "OTTHUMT00000320769.1"; +chr22 HAVANA transcript 27067501 27067777 . + . gene_id "ENSG00000244625.1"; transcript_id "ENST00000450963.1"; gene_type "lincRNA"; gene_status "NOVEL"; gene_name "CTA-211A9.5"; transcript_type "lincRNA"; transcript_status "KNOWN"; transcript_name "CTA-211A9.5-001"; level 2; havana_gene "OTTHUMG00000150981.3"; havana_transcript "OTTHUMT00000320768.1"; +chr22 HAVANA transcript 27068507 27068739 . + . gene_id "ENSG00000244625.1"; transcript_id "ENST00000450963.1"; gene_type "lincRNA"; gene_status "NOVEL"; gene_name "CTA-211A9.5"; transcript_type "lincRNA"; transcript_status "KNOWN"; transcript_name "CTA-211A9.5-001"; level 2; havana_gene "OTTHUMG00000150981.3"; havana_transcript "OTTHUMT00000320768.1"; +chr22 HAVANA transcript 27067501 27067777 . + . gene_id "ENSG00000244625.1"; transcript_id "ENST00000449017.1"; gene_type "lincRNA"; gene_status "NOVEL"; gene_name "CTA-211A9.5"; transcript_type "lincRNA"; transcript_status "KNOWN"; transcript_name "CTA-211A9.5-003"; level 2; havana_gene "OTTHUMG00000150981.3"; havana_transcript "OTTHUMT00000320770.1"; +chr22 HAVANA transcript 27068507 27068753 . + . gene_id "ENSG00000244625.1"; transcript_id "ENST00000449017.1"; gene_type "lincRNA"; gene_status "NOVEL"; gene_name "CTA-211A9.5"; transcript_type "lincRNA"; transcript_status "KNOWN"; transcript_name "CTA-211A9.5-003"; level 2; havana_gene "OTTHUMG00000150981.3"; havana_transcript "OTTHUMT00000320770.1"; +chr22 HAVANA transcript 27067501 27067777 . + . gene_id "ENSG00000244625.1"; transcript_id "ENST00000435162.1"; gene_type "lincRNA"; gene_status "NOVEL"; gene_name "CTA-211A9.5"; transcript_type "lincRNA"; transcript_status "KNOWN"; transcript_name "CTA-211A9.5-006"; level 2; havana_gene "OTTHUMG00000150981.3"; havana_transcript "OTTHUMT00000320773.1"; +chr22 HAVANA transcript 27068507 27068767 . + . gene_id "ENSG00000244625.1"; transcript_id "ENST00000435162.1"; gene_type "lincRNA"; gene_status "NOVEL"; gene_name "CTA-211A9.5"; transcript_type "lincRNA"; transcript_status "KNOWN"; transcript_name "CTA-211A9.5-006"; level 2; havana_gene "OTTHUMG00000150981.3"; havana_transcript "OTTHUMT00000320773.1"; +chr22 HAVANA transcript 27067501 27067777 . + . gene_id "ENSG00000244625.1"; transcript_id "ENST00000437071.1"; gene_type "lincRNA"; gene_status "NOVEL"; gene_name "CTA-211A9.5"; transcript_type "lincRNA"; transcript_status "KNOWN"; transcript_name "CTA-211A9.5-007"; level 1; tag "basic"; tag "exp_conf"; havana_gene "OTTHUMG00000150981.3"; havana_transcript "OTTHUMT00000320774.1"; +chr22 HAVANA transcript 27068507 27068767 . + . gene_id "ENSG00000244625.1"; transcript_id "ENST00000437071.1"; gene_type "lincRNA"; gene_status "NOVEL"; gene_name "CTA-211A9.5"; transcript_type "lincRNA"; transcript_status "KNOWN"; transcript_name "CTA-211A9.5-007"; level 1; tag "basic"; tag "exp_conf"; havana_gene "OTTHUMG00000150981.3"; havana_transcript "OTTHUMT00000320774.1"; +chr22 HAVANA transcript 27067501 27067777 . + . gene_id "ENSG00000244625.1"; transcript_id "ENST00000440816.1"; gene_type "lincRNA"; gene_status "NOVEL"; gene_name "CTA-211A9.5"; transcript_type "lincRNA"; transcript_status "KNOWN"; transcript_name "CTA-211A9.5-009"; level 2; havana_gene "OTTHUMG00000150981.3"; havana_transcript "OTTHUMT00000322344.1"; +chr22 HAVANA transcript 27068507 27068776 . + . gene_id "ENSG00000244625.1"; transcript_id "ENST00000440816.1"; gene_type "lincRNA"; gene_status "NOVEL"; gene_name "CTA-211A9.5"; transcript_type "lincRNA"; transcript_status "KNOWN"; transcript_name "CTA-211A9.5-009"; level 2; havana_gene "OTTHUMG00000150981.3"; havana_transcript "OTTHUMT00000322344.1"; +chr22 HAVANA transcript 27067501 27067777 . + . gene_id "ENSG00000244625.1"; transcript_id "ENST00000421253.1"; gene_type "lincRNA"; gene_status "NOVEL"; gene_name "CTA-211A9.5"; transcript_type "lincRNA"; transcript_status "KNOWN"; transcript_name "CTA-211A9.5-005"; level 2; havana_gene "OTTHUMG00000150981.3"; havana_transcript "OTTHUMT00000320772.1"; +chr22 HAVANA transcript 27068507 27068818 . + . gene_id "ENSG00000244625.1"; transcript_id "ENST00000421253.1"; gene_type "lincRNA"; gene_status "NOVEL"; gene_name "CTA-211A9.5"; transcript_type "lincRNA"; transcript_status "KNOWN"; transcript_name "CTA-211A9.5-005"; level 2; havana_gene "OTTHUMG00000150981.3"; havana_transcript "OTTHUMT00000320772.1"; +chr22 HAVANA transcript 28315257 28315441 . - . gene_id "ENSG00000180957.13"; transcript_id "ENST00000335272.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PITPNB"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PITPNB-001"; level 2; tag "basic"; tag "appris_candidate"; tag "CCDS"; ccdsid "CCDS13842.1"; havana_gene "OTTHUMG00000150976.2"; havana_transcript "OTTHUMT00000320740.1"; +chr22 HAVANA transcript 28315244 28315441 . - . gene_id "ENSG00000180957.13"; transcript_id "ENST00000320996.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PITPNB"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PITPNB-002"; level 2; tag "basic"; havana_gene "OTTHUMG00000150976.2"; havana_transcript "OTTHUMT00000320741.1"; +chr22 ENSEMBL transcript 28315116 28315441 . - . gene_id "ENSG00000180957.13"; transcript_id "ENST00000455418.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PITPNB"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PITPNB-201"; level 3; tag "basic"; tag "appris_candidate_longest"; havana_gene "OTTHUMG00000150976.2"; +chr22 HAVANA transcript 28315203 28315441 . - . gene_id "ENSG00000180957.13"; transcript_id "ENST00000436663.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PITPNB"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "PITPNB-006"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000150976.2"; havana_transcript "OTTHUMT00000320745.1"; +chr22 HAVANA transcript 28315245 28315441 . - . gene_id "ENSG00000180957.13"; transcript_id "ENST00000460566.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PITPNB"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "PITPNB-005"; level 2; havana_gene "OTTHUMG00000150976.2"; havana_transcript "OTTHUMT00000320744.1"; +chr22 HAVANA transcript 28315233 28315441 . - . gene_id "ENSG00000180957.13"; transcript_id "ENST00000471825.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PITPNB"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "PITPNB-004"; level 2; havana_gene "OTTHUMG00000150976.2"; havana_transcript "OTTHUMT00000320743.1"; +chr22 HAVANA transcript 28314598 28314874 . + . gene_id "ENSG00000235954.2"; transcript_id "ENST00000430853.1"; gene_type "processed_transcript"; gene_status "KNOWN"; gene_name "TTC28-AS1"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "TTC28-AS1-006"; level 2; tag "basic"; havana_gene "OTTHUMG00000150973.1"; havana_transcript "OTTHUMT00000320721.1"; +chr22 HAVANA transcript 28315042 28315363 . + . gene_id "ENSG00000235954.2"; transcript_id "ENST00000430853.1"; gene_type "processed_transcript"; gene_status "KNOWN"; gene_name "TTC28-AS1"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "TTC28-AS1-006"; level 2; tag "basic"; havana_gene "OTTHUMG00000150973.1"; havana_transcript "OTTHUMT00000320721.1"; +chr22 HAVANA transcript 28314598 28314874 . + . gene_id "ENSG00000235954.2"; transcript_id "ENST00000424161.1"; gene_type "processed_transcript"; gene_status "KNOWN"; gene_name "TTC28-AS1"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "TTC28-AS1-007"; level 2; tag "basic"; havana_gene "OTTHUMG00000150973.1"; havana_transcript "OTTHUMT00000320722.1"; +chr22 HAVANA transcript 28315042 28315379 . + . gene_id "ENSG00000235954.2"; transcript_id "ENST00000424161.1"; gene_type "processed_transcript"; gene_status "KNOWN"; gene_name "TTC28-AS1"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "TTC28-AS1-007"; level 2; tag "basic"; havana_gene "OTTHUMG00000150973.1"; havana_transcript "OTTHUMT00000320722.1"; +chr22 HAVANA transcript 28314598 28314874 . + . gene_id "ENSG00000235954.2"; transcript_id "ENST00000419253.1"; gene_type "processed_transcript"; gene_status "KNOWN"; gene_name "TTC28-AS1"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "TTC28-AS1-002"; level 2; tag "basic"; havana_gene "OTTHUMG00000150973.1"; havana_transcript "OTTHUMT00000320717.1"; +chr22 HAVANA transcript 28315042 28315388 . + . gene_id "ENSG00000235954.2"; transcript_id "ENST00000419253.1"; gene_type "processed_transcript"; gene_status "KNOWN"; gene_name "TTC28-AS1"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "TTC28-AS1-002"; level 2; tag "basic"; havana_gene "OTTHUMG00000150973.1"; havana_transcript "OTTHUMT00000320717.1"; +chr22 HAVANA transcript 28314598 28314874 . + . gene_id "ENSG00000235954.2"; transcript_id "ENST00000454741.1"; gene_type "processed_transcript"; gene_status "KNOWN"; gene_name "TTC28-AS1"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "TTC28-AS1-001"; level 1; tag "basic"; tag "exp_conf"; havana_gene "OTTHUMG00000150973.1"; havana_transcript "OTTHUMT00000320716.1"; +chr22 HAVANA transcript 28315042 28315408 . + . gene_id "ENSG00000235954.2"; transcript_id "ENST00000454741.1"; gene_type "processed_transcript"; gene_status "KNOWN"; gene_name "TTC28-AS1"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "TTC28-AS1-001"; level 1; tag "basic"; tag "exp_conf"; havana_gene "OTTHUMG00000150973.1"; havana_transcript "OTTHUMT00000320716.1"; +chr22 HAVANA transcript 28314598 28314874 . + . gene_id "ENSG00000235954.2"; transcript_id "ENST00000453632.1"; gene_type "processed_transcript"; gene_status "KNOWN"; gene_name "TTC28-AS1"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "TTC28-AS1-008"; level 2; tag "basic"; havana_gene "OTTHUMG00000150973.1"; havana_transcript "OTTHUMT00000320723.1"; +chr22 HAVANA transcript 28315042 28315416 . + . gene_id "ENSG00000235954.2"; transcript_id "ENST00000453632.1"; gene_type "processed_transcript"; gene_status "KNOWN"; gene_name "TTC28-AS1"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "TTC28-AS1-008"; level 2; tag "basic"; havana_gene "OTTHUMG00000150973.1"; havana_transcript "OTTHUMT00000320723.1"; +chr22 HAVANA transcript 28314598 28314874 . + . gene_id "ENSG00000235954.2"; transcript_id "ENST00000436996.1"; gene_type "processed_transcript"; gene_status "KNOWN"; gene_name "TTC28-AS1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "TTC28-AS1-009"; level 2; havana_gene "OTTHUMG00000150973.1"; havana_transcript "OTTHUMT00000320724.1"; +chr22 HAVANA transcript 28315042 28315424 . 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. + . gene_id "ENSG00000235954.2"; transcript_id "ENST00000417381.1"; gene_type "processed_transcript"; gene_status "KNOWN"; gene_name "TTC28-AS1"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "TTC28-AS1-013"; level 2; tag "basic"; havana_gene "OTTHUMG00000150973.1"; havana_transcript "OTTHUMT00000320728.1"; +chr22 HAVANA transcript 28315042 28315441 . + . gene_id "ENSG00000235954.2"; transcript_id "ENST00000417381.1"; gene_type "processed_transcript"; gene_status "KNOWN"; gene_name "TTC28-AS1"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "TTC28-AS1-013"; level 2; tag "basic"; havana_gene "OTTHUMG00000150973.1"; havana_transcript "OTTHUMT00000320728.1"; +chr22 HAVANA transcript 28314598 28314874 . + . gene_id "ENSG00000235954.2"; transcript_id "ENST00000430525.1"; gene_type "processed_transcript"; gene_status "KNOWN"; gene_name "TTC28-AS1"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "TTC28-AS1-017"; 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"OTTHUMT00000320731.1"; +chr22 ENSEMBL transcript 29137823 29137851 . - . gene_id "ENSG00000183765.16"; transcript_id "ENST00000348295.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CHEK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CHEK2-201"; level 3; tag "basic"; tag "CCDS"; ccdsid "CCDS13844.1"; havana_gene "OTTHUMG00000151023.21"; +chr22 ENSEMBL transcript 29137823 29137851 . - . gene_id "ENSG00000183765.16"; transcript_id "ENST00000382578.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CHEK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CHEK2-204"; level 3; tag "basic"; havana_gene "OTTHUMG00000151023.21"; +chr22 ENSEMBL transcript 29137823 29137851 . - . gene_id "ENSG00000183765.16"; transcript_id "ENST00000382565.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CHEK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CHEK2-202"; level 3; tag "basic"; havana_gene "OTTHUMG00000151023.21"; +chr22 ENSEMBL transcript 29137823 29137851 . - . gene_id "ENSG00000183765.16"; transcript_id "ENST00000382566.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CHEK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CHEK2-203"; level 3; tag "basic"; havana_gene "OTTHUMG00000151023.21"; +chr22 HAVANA transcript 29137833 29137851 . - . gene_id "ENSG00000183765.16"; transcript_id "ENST00000328354.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CHEK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CHEK2-002"; level 2; tag "basic"; tag "appris_candidate"; tag "CCDS"; ccdsid "CCDS13843.1"; havana_gene "OTTHUMG00000151023.21"; havana_transcript "OTTHUMT00000321015.2"; +chr22 HAVANA transcript 29137789 29137851 . - . gene_id "ENSG00000183765.16"; transcript_id "ENST00000405598.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CHEK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CHEK2-005"; level 2; tag "basic"; tag "appris_candidate"; tag "CCDS"; ccdsid "CCDS13843.1"; havana_gene "OTTHUMG00000151023.21"; havana_transcript "OTTHUMT00000321150.1"; +chr22 HAVANA transcript 29137827 29137851 . - . gene_id "ENSG00000183765.16"; transcript_id "ENST00000382580.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CHEK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CHEK2-003"; level 2; tag "basic"; tag "appris_candidate_longest"; tag "CCDS"; ccdsid "CCDS33629.1"; havana_gene "OTTHUMG00000151023.21"; havana_transcript "OTTHUMT00000321016.2"; +chr22 HAVANA transcript 29137795 29137851 . - . gene_id "ENSG00000183765.16"; transcript_id "ENST00000433028.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CHEK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "CHEK2-004"; level 2; havana_gene "OTTHUMG00000151023.21"; havana_transcript "OTTHUMT00000321017.2"; +chr22 HAVANA transcript 29137800 29137851 . - . gene_id "ENSG00000183765.16"; transcript_id "ENST00000425190.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CHEK2"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "CHEK2-011"; level 1; tag "mRNA_end_NF"; tag "cds_end_NF"; tag "exp_conf"; havana_gene "OTTHUMG00000151023.21"; havana_transcript "OTTHUMT00000321156.2"; +chr22 HAVANA transcript 29137772 29137851 . - . gene_id "ENSG00000183765.16"; transcript_id "ENST00000439200.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CHEK2"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "CHEK2-013"; level 1; tag "mRNA_end_NF"; tag "cds_end_NF"; tag "exp_conf"; havana_gene "OTTHUMG00000151023.21"; havana_transcript "OTTHUMT00000321158.17"; +chr22 HAVANA transcript 29137791 29137851 . - . gene_id "ENSG00000183765.16"; transcript_id "ENST00000398017.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CHEK2"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "CHEK2-012"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000151023.21"; havana_transcript "OTTHUMT00000321157.2"; +chr22 HAVANA transcript 29137551 29137851 . + . gene_id "ENSG00000100209.5"; transcript_id "ENST00000216027.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HSCB"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HSCB-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13845.1"; havana_gene "OTTHUMG00000151092.1"; havana_transcript "OTTHUMT00000321263.1"; +chr22 HAVANA transcript 29137551 29137851 . + . gene_id "ENSG00000100209.5"; transcript_id "ENST00000450178.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HSCB"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "HSCB-002"; level 2; havana_gene "OTTHUMG00000151092.1"; havana_transcript "OTTHUMT00000321264.1"; +chr22 HAVANA transcript 29137551 29137851 . + . gene_id "ENSG00000100209.5"; transcript_id "ENST00000398941.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HSCB"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HSCB-003"; level 2; tag "basic"; havana_gene "OTTHUMG00000151092.1"; havana_transcript "OTTHUMT00000321265.1"; +chr22 HAVANA transcript 29137551 29137851 . + . gene_id "ENSG00000100209.5"; transcript_id "ENST00000420442.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HSCB"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "HSCB-007"; level 2; havana_gene "OTTHUMG00000151092.1"; havana_transcript "OTTHUMT00000321269.1"; +chr22 HAVANA transcript 29137551 29137851 . + . gene_id "ENSG00000100209.5"; transcript_id "ENST00000485599.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HSCB"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "HSCB-004"; level 2; havana_gene "OTTHUMG00000151092.1"; havana_transcript "OTTHUMT00000321266.1"; +chr22 HAVANA transcript 29137551 29137851 . + . gene_id "ENSG00000100209.5"; transcript_id "ENST00000483861.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HSCB"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "HSCB-005"; level 2; havana_gene "OTTHUMG00000151092.1"; havana_transcript "OTTHUMT00000321267.1"; +chr22 HAVANA transcript 29137551 29137851 . + . gene_id "ENSG00000100209.5"; transcript_id "ENST00000495977.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HSCB"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "HSCB-006"; level 2; tag "basic"; havana_gene "OTTHUMG00000151092.1"; havana_transcript "OTTHUMT00000321268.1"; +chr22 HAVANA transcript 29168474 29168661 . + . gene_id "ENSG00000159873.5"; transcript_id "ENST00000249064.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CCDC117"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CCDC117-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13846.1"; havana_gene "OTTHUMG00000151091.1"; havana_transcript "OTTHUMT00000321258.1"; +chr22 HAVANA transcript 29168474 29168691 . + . gene_id "ENSG00000159873.5"; transcript_id "ENST00000453543.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CCDC117"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "CCDC117-003"; level 2; havana_gene "OTTHUMG00000151091.1"; havana_transcript "OTTHUMT00000321260.1"; +chr22 HAVANA transcript 29168474 29168715 . + . gene_id "ENSG00000159873.5"; transcript_id "ENST00000444523.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CCDC117"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "CCDC117-002"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000151091.1"; havana_transcript "OTTHUMT00000321259.1"; +chr22 ENSEMBL transcript 29168474 29168715 . + . gene_id "ENSG00000159873.5"; transcript_id "ENST00000448492.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CCDC117"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CCDC117-203"; level 3; tag "basic"; havana_gene "OTTHUMG00000151091.1"; +chr22 ENSEMBL transcript 29168474 29168761 . + . gene_id "ENSG00000159873.5"; transcript_id "ENST00000421503.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CCDC117"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CCDC117-201"; level 3; tag "basic"; havana_gene "OTTHUMG00000151091.1"; +chr22 ENSEMBL transcript 29168474 29168802 . + . gene_id "ENSG00000159873.5"; transcript_id "ENST00000443309.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CCDC117"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CCDC117-202"; level 3; tag "basic"; havana_gene "OTTHUMG00000151091.1"; +chr22 HAVANA transcript 29168474 29168802 . + . gene_id "ENSG00000159873.5"; transcript_id "ENST00000432510.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CCDC117"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "CCDC117-004"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000151091.1"; havana_transcript "OTTHUMT00000321261.1"; +chr22 HAVANA transcript 29169201 29169228 . + . gene_id "ENSG00000159873.5"; transcript_id "ENST00000432510.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CCDC117"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "CCDC117-004"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000151091.1"; havana_transcript "OTTHUMT00000321261.1"; +chr22 HAVANA transcript 29196609 29196919 . - . gene_id "ENSG00000100219.12"; transcript_id "ENST00000216037.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "XBP1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "XBP1-001"; level 2; tag "basic"; tag "appris_candidate"; tag "CCDS"; ccdsid "CCDS13847.1"; havana_gene "OTTHUMG00000151094.2"; havana_transcript "OTTHUMT00000321274.1"; +chr22 HAVANA transcript 29196609 29196919 . - . gene_id "ENSG00000100219.12"; transcript_id "ENST00000403532.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "XBP1"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "XBP1-006"; level 1; tag "basic"; tag "appris_candidate_longest"; tag "exp_conf"; havana_gene "OTTHUMG00000151094.2"; havana_transcript "OTTHUMT00000321279.1"; +chr22 HAVANA transcript 29196609 29196919 . - . gene_id "ENSG00000100219.12"; transcript_id "ENST00000405219.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "XBP1"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "XBP1-003"; level 1; tag "basic"; tag "exp_conf"; havana_gene "OTTHUMG00000151094.2"; havana_transcript "OTTHUMT00000321276.1"; +chr22 HAVANA transcript 29196609 29196919 . - . gene_id "ENSG00000100219.12"; transcript_id "ENST00000344347.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "XBP1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "XBP1-007"; level 2; tag "non_canonical_other"; tag "basic"; havana_gene "OTTHUMG00000151094.2"; havana_transcript "OTTHUMT00000447486.1"; +chr22 HAVANA transcript 29196609 29196919 . - . gene_id "ENSG00000100219.12"; transcript_id "ENST00000482720.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "XBP1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "XBP1-005"; level 2; havana_gene "OTTHUMG00000151094.2"; havana_transcript "OTTHUMT00000321278.1"; +chr22 HAVANA transcript 29196609 29196670 . + . gene_id "ENSG00000226471.2"; transcript_id "ENST00000458080.1"; gene_type "antisense"; gene_status "NOVEL"; gene_name "CTA-292E10.6"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "CTA-292E10.6-001"; level 1; tag "basic"; tag "exp_conf"; havana_gene "OTTHUMG00000151093.2"; havana_transcript "OTTHUMT00000321270.1"; +chr22 HAVANA transcript 29196609 29196691 . + . gene_id "ENSG00000226471.2"; transcript_id "ENST00000418292.1"; gene_type "antisense"; gene_status "NOVEL"; gene_name "CTA-292E10.6"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "CTA-292E10.6-002"; level 2; tag "basic"; havana_gene "OTTHUMG00000151093.2"; havana_transcript "OTTHUMT00000321271.1"; +chr22 HAVANA transcript 29196609 29196696 . + . gene_id "ENSG00000226471.2"; transcript_id "ENST00000585003.1"; gene_type "antisense"; gene_status "NOVEL"; gene_name "CTA-292E10.6"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "CTA-292E10.6-005"; level 2; tag "basic"; havana_gene "OTTHUMG00000151093.2"; havana_transcript "OTTHUMT00000447487.1"; +chr22 HAVANA transcript 29196609 29196919 . + . gene_id "ENSG00000226471.2"; transcript_id "ENST00000451486.1"; gene_type "antisense"; gene_status "NOVEL"; gene_name "CTA-292E10.6"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "CTA-292E10.6-003"; level 2; tag "basic"; havana_gene "OTTHUMG00000151093.2"; havana_transcript "OTTHUMT00000321272.1"; +chr22 HAVANA transcript 29600839 29601115 . + . gene_id "ENSG00000186998.11"; transcript_id "ENST00000334018.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EMID1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EMID1-003"; level 2; tag "basic"; tag "CCDS"; ccdsid "CCDS33630.1"; havana_gene "OTTHUMG00000151013.7"; havana_transcript "OTTHUMT00000321076.1"; +chr22 HAVANA transcript 29600839 29601115 . + . gene_id "ENSG00000186998.11"; transcript_id "ENST00000429226.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EMID1"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "EMID1-006"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000151013.7"; havana_transcript "OTTHUMT00000321079.1"; +chr22 HAVANA transcript 29600839 29601115 . + . gene_id "ENSG00000186998.11"; transcript_id "ENST00000404755.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EMID1"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "EMID1-001"; level 2; tag "basic"; havana_gene "OTTHUMG00000151013.7"; havana_transcript "OTTHUMT00000320955.1"; +chr22 HAVANA transcript 29600839 29601115 . + . gene_id "ENSG00000186998.11"; transcript_id "ENST00000404820.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EMID1"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "EMID1-002"; level 2; tag "basic"; tag "appris_principal"; havana_gene "OTTHUMG00000151013.7"; havana_transcript "OTTHUMT00000321075.1"; +chr22 HAVANA transcript 29600839 29601115 . + . gene_id "ENSG00000186998.11"; transcript_id "ENST00000430127.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EMID1"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "EMID1-005"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000151013.7"; havana_transcript "OTTHUMT00000321078.1"; +chr22 HAVANA transcript 29600839 29601115 . + . gene_id "ENSG00000186998.11"; transcript_id "ENST00000435427.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EMID1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "EMID1-008"; level 2; havana_gene "OTTHUMG00000151013.7"; havana_transcript "OTTHUMT00000321081.1"; +chr22 HAVANA transcript 29664166 29664527 . - . gene_id "ENSG00000100263.9"; transcript_id "ENST00000216085.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RHBDD3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RHBDD3-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13850.1"; havana_gene "OTTHUMG00000151032.2"; havana_transcript "OTTHUMT00000321085.1"; +chr22 HAVANA transcript 29665811 29665967 . - . gene_id "ENSG00000100263.9"; transcript_id "ENST00000216085.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RHBDD3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RHBDD3-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13850.1"; havana_gene "OTTHUMG00000151032.2"; havana_transcript "OTTHUMT00000321085.1"; +chr22 HAVANA transcript 29664166 29664527 . - . gene_id "ENSG00000100263.9"; transcript_id "ENST00000413137.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RHBDD3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "RHBDD3-002"; level 2; havana_gene "OTTHUMG00000151032.2"; havana_transcript "OTTHUMT00000321086.2"; +chr22 HAVANA transcript 29665811 29665934 . - . gene_id "ENSG00000100263.9"; transcript_id "ENST00000413137.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RHBDD3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "RHBDD3-002"; level 2; havana_gene "OTTHUMG00000151032.2"; havana_transcript "OTTHUMT00000321086.2"; +chr22 HAVANA transcript 29664199 29664527 . - . gene_id "ENSG00000100263.9"; transcript_id "ENST00000414672.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RHBDD3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RHBDD3-005"; level 2; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000151032.2"; havana_transcript "OTTHUMT00000321089.1"; +chr22 HAVANA transcript 29665811 29666087 . - . gene_id "ENSG00000100263.9"; transcript_id "ENST00000414672.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RHBDD3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RHBDD3-005"; level 2; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000151032.2"; havana_transcript "OTTHUMT00000321089.1"; +chr22 HAVANA transcript 29664166 29664527 . - . gene_id "ENSG00000100263.9"; transcript_id "ENST00000406335.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RHBDD3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RHBDD3-006"; level 2; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000151032.2"; havana_transcript "OTTHUMT00000321090.1"; +chr22 HAVANA transcript 29664166 29664527 . - . gene_id "ENSG00000100263.9"; transcript_id "ENST00000493894.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RHBDD3"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "RHBDD3-003"; level 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"ENST00000488106.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RHBDD3"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "RHBDD3-004"; level 2; tag "mRNA_end_NF"; havana_gene "OTTHUMG00000151032.2"; havana_transcript "OTTHUMT00000321088.1"; +chr22 HAVANA transcript 29664166 29664241 . + . gene_id "ENSG00000182944.13"; transcript_id "ENST00000436425.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "EWSR1-012"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000151107.7"; havana_transcript "OTTHUMT00000321356.1"; +chr22 HAVANA transcript 29664166 29664241 . + . gene_id "ENSG00000182944.13"; transcript_id "ENST00000447973.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "EWSR1-014"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000151107.7"; havana_transcript "OTTHUMT00000321358.1"; +chr22 HAVANA transcript 29664166 29664261 . + . gene_id "ENSG00000182944.13"; transcript_id "ENST00000485037.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-003"; level 2; havana_gene "OTTHUMG00000151107.7"; havana_transcript "OTTHUMT00000321347.1"; +chr22 HAVANA transcript 29664166 29664261 . + . gene_id "ENSG00000182944.13"; transcript_id "ENST00000406548.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "EWSR1-002"; level 2; tag "basic"; tag "appris_candidate"; tag "CCDS"; ccdsid "CCDS54513.1"; havana_gene "OTTHUMG00000151107.7"; havana_transcript "OTTHUMT00000321346.1"; +chr22 HAVANA transcript 29664166 29664270 . + . gene_id "ENSG00000182944.13"; transcript_id "ENST00000437155.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "EWSR1-013"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000151107.7"; havana_transcript "OTTHUMT00000321357.2"; +chr22 HAVANA transcript 29664166 29664278 . + . gene_id "ENSG00000182944.13"; transcript_id "ENST00000415761.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-017"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000151107.7"; havana_transcript "OTTHUMT00000321361.1"; +chr22 HAVANA transcript 29664166 29664279 . + . gene_id "ENSG00000182944.13"; transcript_id "ENST00000331029.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "EWSR1-007"; level 2; tag "not_organism_supported"; tag "basic"; havana_gene "OTTHUMG00000151107.7"; havana_transcript "OTTHUMT00000321351.1"; +chr22 HAVANA transcript 29664166 29664301 . + . gene_id "ENSG00000182944.13"; transcript_id "ENST00000483415.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-006"; level 2; havana_gene "OTTHUMG00000151107.7"; havana_transcript "OTTHUMT00000321350.1"; +chr22 HAVANA transcript 29664166 29664304 . + . gene_id "ENSG00000182944.13"; transcript_id "ENST00000414183.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-021"; level 2; tag "basic"; tag "appris_candidate_longest"; tag "CCDS"; ccdsid "CCDS13852.2"; havana_gene "OTTHUMG00000151107.7"; havana_transcript "OTTHUMT00000358290.1"; +chr22 HAVANA transcript 29664166 29664306 . + . gene_id "ENSG00000182944.13"; transcript_id "ENST00000333395.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "EWSR1-004"; level 2; tag "basic"; tag "CCDS"; ccdsid "CCDS54512.1"; havana_gene "OTTHUMG00000151107.7"; havana_transcript "OTTHUMT00000321348.1"; +chr22 HAVANA transcript 29664166 29664314 . + . gene_id "ENSG00000182944.13"; transcript_id "ENST00000455726.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "EWSR1-018"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000151107.7"; havana_transcript "OTTHUMT00000321362.1"; +chr22 HAVANA transcript 29664166 29664314 . + . gene_id "ENSG00000182944.13"; transcript_id "ENST00000332035.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "EWSR1-008"; level 2; tag "basic"; tag "appris_candidate"; tag "CCDS"; ccdsid "CCDS54514.1"; havana_gene "OTTHUMG00000151107.7"; havana_transcript "OTTHUMT00000321352.1"; +chr22 HAVANA transcript 29664166 29664527 . + . gene_id "ENSG00000182944.13"; transcript_id "ENST00000493426.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-015"; level 2; havana_gene "OTTHUMG00000151107.7"; havana_transcript "OTTHUMT00000321359.1"; +chr22 HAVANA transcript 29949772 29949982 . - . gene_id "ENSG00000100296.9"; transcript_id "ENST00000490103.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "THOC5"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "THOC5-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13859.1"; havana_gene "OTTHUMG00000151291.9"; havana_transcript "OTTHUMT00000322097.1"; +chr22 HAVANA transcript 29949683 29949982 . - . gene_id "ENSG00000100296.9"; transcript_id "ENST00000397872.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "THOC5"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "THOC5-202"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13859.1"; havana_gene "OTTHUMG00000151291.9"; havana_transcript "OTTHUMT00000322100.1"; +chr22 HAVANA transcript 29949683 29949982 . - . gene_id "ENSG00000100296.9"; transcript_id "ENST00000397871.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "THOC5"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "THOC5-201"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13859.1"; havana_gene "OTTHUMG00000151291.9"; havana_transcript "OTTHUMT00000322097.1"; +chr22 HAVANA transcript 29949756 29949982 . - . gene_id "ENSG00000100296.9"; transcript_id "ENST00000397873.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "THOC5"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "THOC5-004"; level 2; tag "alternative_5_UTR"; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13859.1"; havana_gene "OTTHUMG00000151291.9"; havana_transcript "OTTHUMT00000322100.1"; +chr22 HAVANA transcript 29949683 29949982 . - . gene_id "ENSG00000100296.9"; transcript_id "ENST00000440771.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "THOC5"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "THOC5-010"; level 2; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000151291.9"; havana_transcript "OTTHUMT00000322106.1"; +chr22 HAVANA transcript 29949683 29949982 . - . gene_id "ENSG00000100296.9"; transcript_id "ENST00000428374.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "THOC5"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "THOC5-008"; level 2; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000151291.9"; havana_transcript "OTTHUMT00000322104.1"; +chr22 HAVANA transcript 29949731 29949982 . - . gene_id "ENSG00000100296.9"; transcript_id "ENST00000414902.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "THOC5"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "THOC5-012"; level 2; havana_gene "OTTHUMG00000151291.9"; havana_transcript "OTTHUMT00000322108.1"; +chr22 ENSEMBL transcript 29999124 29999400 . + . gene_id "ENSG00000186575.13"; transcript_id "ENST00000413209.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NF2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NF2-202"; level 3; tag "basic"; tag "CCDS"; ccdsid "CCDS54516.1"; havana_gene "OTTHUMG00000030727.4"; +chr22 ENSEMBL transcript 29999124 29999400 . + . gene_id "ENSG00000186575.13"; transcript_id "ENST00000347330.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NF2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NF2-201"; level 3; tag "basic"; havana_gene "OTTHUMG00000030727.4"; +chr22 HAVANA transcript 29999124 29999400 . + . gene_id "ENSG00000186575.13"; transcript_id "ENST00000338641.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NF2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NF2-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13861.1"; havana_gene "OTTHUMG00000030727.4"; havana_transcript "OTTHUMT00000075615.3"; +chr22 HAVANA transcript 29999124 29999400 . + . gene_id "ENSG00000186575.13"; transcript_id "ENST00000403435.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NF2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NF2-004"; level 2; tag "basic"; havana_gene "OTTHUMG00000030727.4"; havana_transcript "OTTHUMT00000322027.1"; +chr22 HAVANA transcript 29999124 29999400 . + . gene_id "ENSG00000186575.13"; transcript_id "ENST00000361452.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NF2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NF2-010"; level 2; tag "basic"; tag "CCDS"; ccdsid "CCDS13864.1"; havana_gene "OTTHUMG00000030727.4"; havana_transcript "OTTHUMT00000322036.1"; +chr22 HAVANA transcript 29999124 29999400 . + . gene_id "ENSG00000186575.13"; transcript_id "ENST00000403999.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NF2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NF2-003"; level 2; tag "basic"; tag "CCDS"; ccdsid "CCDS13862.1"; havana_gene "OTTHUMG00000030727.4"; havana_transcript "OTTHUMT00000322026.1"; +chr22 HAVANA transcript 29999124 29999400 . + . gene_id "ENSG00000186575.13"; transcript_id "ENST00000334961.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NF2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NF2-008"; level 2; tag "alternative_3_UTR"; tag "basic"; tag "CCDS"; ccdsid "CCDS13865.1"; havana_gene "OTTHUMG00000030727.4"; havana_transcript "OTTHUMT00000322031.2"; +chr22 HAVANA transcript 29999124 29999400 . + . gene_id "ENSG00000186575.13"; transcript_id "ENST00000353887.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NF2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NF2-005"; level 2; tag "basic"; tag "CCDS"; ccdsid "CCDS13865.1"; havana_gene "OTTHUMG00000030727.4"; havana_transcript "OTTHUMT00000322028.1"; +chr22 HAVANA transcript 29999124 29999400 . + . gene_id "ENSG00000186575.13"; transcript_id "ENST00000432151.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NF2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "NF2-002"; level 2; havana_gene "OTTHUMG00000030727.4"; havana_transcript "OTTHUMT00000277090.2"; +chr22 HAVANA transcript 29999124 29999400 . + . gene_id "ENSG00000186575.13"; transcript_id "ENST00000361166.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NF2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NF2-007"; level 2; tag "alternative_3_UTR"; tag "basic"; tag "CCDS"; ccdsid "CCDS13862.1"; havana_gene "OTTHUMG00000030727.4"; havana_transcript "OTTHUMT00000322030.1"; +chr22 HAVANA transcript 29999124 29999400 . + . gene_id "ENSG00000186575.13"; transcript_id "ENST00000361676.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NF2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NF2-006"; level 2; tag "basic"; tag "CCDS"; ccdsid "CCDS13863.1"; havana_gene "OTTHUMG00000030727.4"; havana_transcript "OTTHUMT00000322029.1"; +chr22 HAVANA transcript 29999124 29999400 . + . gene_id "ENSG00000186575.13"; transcript_id "ENST00000397789.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NF2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NF2-009"; level 2; tag "alternative_3_UTR"; tag "basic"; tag "CCDS"; ccdsid "CCDS13862.1"; havana_gene "OTTHUMG00000030727.4"; havana_transcript "OTTHUMT00000322035.1"; +chr22 HAVANA transcript 30163246 30163606 . - . gene_id "ENSG00000100319.11"; transcript_id "ENST00000344318.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ZMAT5"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ZMAT5-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13868.1"; havana_gene "OTTHUMG00000151292.1"; havana_transcript "OTTHUMT00000322114.1"; +chr22 HAVANA transcript 30162951 30163050 . - . gene_id "ENSG00000100319.11"; transcript_id "ENST00000344318.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ZMAT5"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ZMAT5-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13868.1"; havana_gene "OTTHUMG00000151292.1"; havana_transcript "OTTHUMT00000322114.1"; +chr22 ENSEMBL transcript 30163246 30163606 . - . gene_id "ENSG00000100319.11"; transcript_id "ENST00000397781.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ZMAT5"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ZMAT5-201"; level 3; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13868.1"; havana_gene "OTTHUMG00000151292.1"; +chr22 ENSEMBL transcript 30162970 30163050 . - . gene_id "ENSG00000100319.11"; transcript_id "ENST00000397781.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ZMAT5"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ZMAT5-201"; level 3; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13868.1"; havana_gene "OTTHUMG00000151292.1"; +chr22 HAVANA transcript 30163246 30163606 . - . gene_id "ENSG00000100319.11"; transcript_id "ENST00000489010.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ZMAT5"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ZMAT5-002"; level 2; havana_gene "OTTHUMG00000151292.1"; havana_transcript "OTTHUMT00000322115.1"; +chr22 HAVANA transcript 30163001 30163050 . - . gene_id "ENSG00000100319.11"; transcript_id "ENST00000489010.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ZMAT5"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ZMAT5-002"; level 2; havana_gene "OTTHUMG00000151292.1"; havana_transcript "OTTHUMT00000322115.1"; +chr22 HAVANA transcript 30163246 30163357 . + . gene_id "ENSG00000184076.10"; transcript_id "ENST00000330029.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "UQCR10"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "UQCR10-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS46680.1"; havana_gene "OTTHUMG00000151283.2"; havana_transcript "OTTHUMT00000322081.1"; +chr22 HAVANA transcript 30162774 30163050 . + . gene_id "ENSG00000184076.10"; transcript_id "ENST00000330029.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "UQCR10"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "UQCR10-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS46680.1"; havana_gene "OTTHUMG00000151283.2"; havana_transcript "OTTHUMT00000322081.1"; +chr22 HAVANA transcript 30163246 30163362 . + . gene_id "ENSG00000184076.10"; transcript_id "ENST00000401406.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "UQCR10"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "UQCR10-002"; level 2; tag "basic"; tag "CCDS"; ccdsid "CCDS46681.1"; havana_gene "OTTHUMG00000151283.2"; havana_transcript "OTTHUMT00000322082.2"; +chr22 HAVANA transcript 30162774 30163050 . + . gene_id "ENSG00000184076.10"; transcript_id "ENST00000401406.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "UQCR10"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "UQCR10-002"; level 2; tag "basic"; tag "CCDS"; ccdsid "CCDS46681.1"; havana_gene "OTTHUMG00000151283.2"; havana_transcript "OTTHUMT00000322082.2"; +chr22 HAVANA transcript 30234364 30234673 . - . gene_id "ENSG00000100325.10"; transcript_id "ENST00000307790.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ASCC2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ASCC2-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13869.1"; havana_gene "OTTHUMG00000067658.5"; havana_transcript "OTTHUMT00000145221.3"; +chr22 HAVANA transcript 30234364 30234673 . - . gene_id "ENSG00000100325.10"; transcript_id "ENST00000397771.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ASCC2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ASCC2-002"; level 2; tag "alternative_5_UTR"; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13869.1"; havana_gene "OTTHUMG00000067658.5"; havana_transcript "OTTHUMT00000322127.1"; +chr22 ENSEMBL transcript 30234364 30234673 . - . gene_id "ENSG00000100325.10"; transcript_id "ENST00000542393.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ASCC2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ASCC2-201"; level 3; tag "basic"; tag "CCDS"; ccdsid "CCDS56226.1"; havana_gene "OTTHUMG00000067658.5"; +chr22 HAVANA transcript 30234364 30234673 . - . gene_id "ENSG00000100325.10"; transcript_id "ENST00000449900.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ASCC2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ASCC2-011"; level 2; havana_gene "OTTHUMG00000067658.5"; havana_transcript "OTTHUMT00000322136.2"; +chr22 HAVANA transcript 30234364 30234673 . - . gene_id "ENSG00000100325.10"; transcript_id "ENST00000495967.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ASCC2"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ASCC2-022"; level 2; havana_gene "OTTHUMG00000067658.5"; havana_transcript "OTTHUMT00000322147.1"; +chr22 HAVANA transcript 30234364 30234673 . - . gene_id "ENSG00000100325.10"; transcript_id "ENST00000465667.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ASCC2"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ASCC2-015"; level 2; havana_gene "OTTHUMG00000067658.5"; havana_transcript "OTTHUMT00000322140.1"; +chr22 HAVANA transcript 30234364 30234673 . - . gene_id "ENSG00000100325.10"; transcript_id "ENST00000495681.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ASCC2"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ASCC2-007"; level 2; havana_gene "OTTHUMG00000067658.5"; havana_transcript "OTTHUMT00000322132.1"; +chr22 HAVANA transcript 30234364 30234673 . - . gene_id "ENSG00000100325.10"; transcript_id "ENST00000453160.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ASCC2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ASCC2-004"; level 2; tag "mRNA_start_NF"; tag "cds_start_NF"; havana_gene "OTTHUMG00000067658.5"; havana_transcript "OTTHUMT00000322129.1"; +chr22 HAVANA transcript 30234364 30234673 . - . gene_id "ENSG00000100325.10"; transcript_id "ENST00000460313.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ASCC2"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ASCC2-006"; level 2; havana_gene "OTTHUMG00000067658.5"; havana_transcript "OTTHUMT00000322131.1"; +chr22 HAVANA transcript 30234364 30234673 . - . gene_id "ENSG00000100325.10"; transcript_id "ENST00000454854.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ASCC2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ASCC2-005"; level 2; havana_gene "OTTHUMG00000067658.5"; havana_transcript "OTTHUMT00000322130.1"; +chr22 HAVANA transcript 30234364 30234673 . - . gene_id "ENSG00000100325.10"; transcript_id "ENST00000492821.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ASCC2"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ASCC2-008"; level 2; havana_gene "OTTHUMG00000067658.5"; havana_transcript "OTTHUMT00000322133.1"; +chr22 HAVANA transcript 30279182 30279185 . + . gene_id "ENSG00000100330.11"; transcript_id "ENST00000445401.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MTMR3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "MTMR3-006"; level 2; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000151278.2"; havana_transcript "OTTHUMT00000322071.1"; +chr22 HAVANA transcript 30279182 30279186 . + . gene_id "ENSG00000100330.11"; transcript_id "ENST00000323630.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MTMR3"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "MTMR3-004"; level 2; tag "basic"; tag "appris_principal"; havana_gene "OTTHUMG00000151278.2"; havana_transcript "OTTHUMT00000322069.1"; +chr22 HAVANA transcript 30279182 30279201 . + . gene_id "ENSG00000100330.11"; transcript_id "ENST00000351488.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MTMR3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "MTMR3-002"; level 2; tag "basic"; tag "CCDS"; ccdsid "CCDS46682.1"; havana_gene "OTTHUMG00000151278.2"; havana_transcript "OTTHUMT00000322067.1"; +chr22 HAVANA transcript 30279182 30279257 . + . gene_id "ENSG00000100330.11"; transcript_id "ENST00000415511.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MTMR3"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "MTMR3-007"; level 2; tag "basic"; havana_gene "OTTHUMG00000151278.2"; havana_transcript "OTTHUMT00000322072.1"; +chr22 HAVANA transcript 30474975 30475368 . + . gene_id "ENSG00000176635.13"; transcript_id "ENST00000336726.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HORMAD2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HORMAD2-002"; level 2; tag "alternative_5_UTR"; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS46683.1"; havana_gene "OTTHUMG00000150881.3"; havana_transcript "OTTHUMT00000320416.2"; +chr22 HAVANA transcript 30474975 30475368 . + . gene_id "ENSG00000176635.13"; transcript_id "ENST00000450612.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HORMAD2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "HORMAD2-003"; level 2; havana_gene "OTTHUMG00000150881.3"; havana_transcript "OTTHUMT00000320464.1"; +chr22 HAVANA transcript 30475000 30475368 . + . gene_id "ENSG00000176635.13"; transcript_id "ENST00000403975.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HORMAD2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HORMAD2-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS46683.1"; havana_gene "OTTHUMG00000150881.3"; havana_transcript "OTTHUMT00000320415.2"; +chr22 HAVANA transcript 30663139 30663438 . - . gene_id "ENSG00000099985.3"; transcript_id "ENST00000215781.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "OSM"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "OSM-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13873.1"; havana_gene "OTTHUMG00000150913.1"; havana_transcript "OTTHUMT00000320512.1"; +chr22 HAVANA transcript 30661808 30662084 . - . gene_id "ENSG00000099985.3"; transcript_id "ENST00000403389.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "OSM"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "OSM-003"; level 1; tag "basic"; tag "exp_conf"; havana_gene "OTTHUMG00000150913.1"; havana_transcript "OTTHUMT00000320514.1"; +chr22 HAVANA transcript 30663139 30663438 . - . gene_id "ENSG00000099985.3"; transcript_id "ENST00000403389.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "OSM"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "OSM-003"; level 1; tag "basic"; tag "exp_conf"; havana_gene "OTTHUMG00000150913.1"; havana_transcript "OTTHUMT00000320514.1"; +chr22 HAVANA transcript 30663139 30663438 . - . gene_id "ENSG00000099985.3"; transcript_id "ENST00000403463.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "OSM"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "OSM-002"; level 1; tag "basic"; tag "exp_conf"; havana_gene "OTTHUMG00000150913.1"; havana_transcript "OTTHUMT00000320513.1"; +chr22 HAVANA transcript 30683796 30684072 . - . gene_id "ENSG00000239282.3"; transcript_id "ENST00000459785.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GATSL3"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "GATSL3-011"; level 2; tag "basic"; havana_gene "OTTHUMG00000150929.3"; havana_transcript "OTTHUMT00000320853.1"; +chr22 HAVANA transcript 30683940 30684072 . - . gene_id "ENSG00000239282.3"; transcript_id "ENST00000464854.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GATSL3"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "GATSL3-010"; level 2; havana_gene "OTTHUMG00000150929.3"; havana_transcript "OTTHUMT00000320852.1"; +chr22 HAVANA transcript 30723192 30723468 . - . gene_id "ENSG00000099992.11"; transcript_id "ENST00000215790.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TBC1D10A"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TBC1D10A-001"; level 2; tag "basic"; tag "appris_candidate"; tag "CCDS"; ccdsid "CCDS13874.1"; havana_gene "OTTHUMG00000150924.2"; havana_transcript "OTTHUMT00000320550.1"; +chr22 HAVANA transcript 30722891 30722948 . - . gene_id "ENSG00000099992.11"; transcript_id "ENST00000403477.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TBC1D10A"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "TBC1D10A-002"; level 1; tag "basic"; tag "appris_candidate_longest"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS56227.1"; havana_gene "OTTHUMG00000150924.2"; havana_transcript "OTTHUMT00000320551.1"; +chr22 HAVANA transcript 30723192 30723468 . - . gene_id "ENSG00000099992.11"; transcript_id "ENST00000403477.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TBC1D10A"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "TBC1D10A-002"; level 1; tag "basic"; tag "appris_candidate_longest"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS56227.1"; havana_gene "OTTHUMG00000150924.2"; havana_transcript "OTTHUMT00000320551.1"; +chr22 HAVANA transcript 30704523 30704859 . - . gene_id "ENSG00000099992.11"; transcript_id "ENST00000403362.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TBC1D10A"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TBC1D10A-003"; level 2; tag "basic"; havana_gene "OTTHUMG00000150924.2"; havana_transcript "OTTHUMT00000320552.1"; +chr22 HAVANA transcript 30722937 30722948 . - . gene_id "ENSG00000099992.11"; transcript_id "ENST00000437122.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TBC1D10A"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "TBC1D10A-011"; level 2; havana_gene "OTTHUMG00000150924.2"; havana_transcript "OTTHUMT00000320560.1"; +chr22 HAVANA transcript 30723192 30723468 . - . gene_id "ENSG00000099992.11"; transcript_id "ENST00000437122.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TBC1D10A"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "TBC1D10A-011"; level 2; havana_gene "OTTHUMG00000150924.2"; havana_transcript "OTTHUMT00000320560.1"; +chr22 HAVANA transcript 30701621 30701822 . - . gene_id "ENSG00000099992.11"; transcript_id "ENST00000393906.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TBC1D10A"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TBC1D10A-014"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000150924.2"; havana_transcript "OTTHUMT00000320563.1"; +chr22 HAVANA transcript 30722891 30722948 . - . gene_id "ENSG00000099992.11"; transcript_id "ENST00000490449.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TBC1D10A"; transcript_type "processed_transcript"; transcript_status "PUTATIVE"; transcript_name "TBC1D10A-012"; level 2; tag "basic"; havana_gene "OTTHUMG00000150924.2"; havana_transcript "OTTHUMT00000320561.1"; +chr22 HAVANA transcript 30723192 30723468 . - . gene_id "ENSG00000099992.11"; transcript_id "ENST00000490449.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TBC1D10A"; transcript_type "processed_transcript"; transcript_status "PUTATIVE"; transcript_name "TBC1D10A-012"; level 2; tag "basic"; havana_gene "OTTHUMG00000150924.2"; havana_transcript "OTTHUMT00000320561.1"; +chr22 HAVANA transcript 30752937 30753097 . - . gene_id "ENSG00000099995.14"; transcript_id "ENST00000215793.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SF3A1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SF3A1-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13875.1"; havana_gene "OTTHUMG00000151005.2"; havana_transcript "OTTHUMT00000320916.2"; +chr22 ENSEMBL transcript 30752914 30753097 . - . gene_id "ENSG00000099995.14"; transcript_id "ENST00000439242.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SF3A1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SF3A1-201"; level 3; tag "basic"; tag "CCDS"; ccdsid "CCDS46684.1"; havana_gene "OTTHUMG00000151005.2"; +chr22 HAVANA transcript 30752874 30753097 . - . gene_id "ENSG00000099995.14"; transcript_id "ENST00000411423.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SF3A1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "SF3A1-004"; level 2; havana_gene "OTTHUMG00000151005.2"; havana_transcript "OTTHUMT00000320919.1"; +chr22 HAVANA transcript 30752909 30753097 . - . gene_id "ENSG00000099995.14"; transcript_id "ENST00000447376.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SF3A1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "SF3A1-009"; level 2; tag "not_organism_supported"; havana_gene "OTTHUMG00000151005.2"; havana_transcript "OTTHUMT00000320924.1"; +chr22 HAVANA transcript 30752881 30753097 . - . gene_id "ENSG00000099995.14"; transcript_id "ENST00000463818.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SF3A1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "SF3A1-003"; level 2; havana_gene "OTTHUMG00000151005.2"; havana_transcript "OTTHUMT00000320918.1"; +chr22 HAVANA transcript 30752884 30753097 . - . gene_id "ENSG00000099995.14"; transcript_id "ENST00000496189.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SF3A1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "SF3A1-002"; level 2; havana_gene "OTTHUMG00000151005.2"; havana_transcript "OTTHUMT00000320917.1"; +chr22 HAVANA transcript 30752762 30752989 . + . gene_id "ENSG00000187860.6"; transcript_id "ENST00000445005.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CCDC157"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "CCDC157-006"; level 2; tag "not_organism_supported"; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000151007.2"; havana_transcript "OTTHUMT00000320954.1"; +chr22 HAVANA transcript 30752762 30752995 . + . gene_id "ENSG00000187860.6"; transcript_id "ENST00000430839.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CCDC157"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "CCDC157-004"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000151007.2"; havana_transcript "OTTHUMT00000320939.1"; +chr22 HAVANA transcript 30752762 30753097 . + . gene_id "ENSG00000187860.6"; transcript_id "ENST00000475975.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CCDC157"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "CCDC157-003"; level 2; havana_gene "OTTHUMG00000151007.2"; havana_transcript "OTTHUMT00000320938.2"; +chr22 HAVANA transcript 30819674 30819760 . - . gene_id "ENSG00000099999.10"; transcript_id "ENST00000431544.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RNF215"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "RNF215-005"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000151016.4"; havana_transcript "OTTHUMT00000320964.1"; +chr22 HAVANA transcript 30819674 30820397 . + . gene_id "ENSG00000242114.1"; transcript_id "ENST00000266263.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MTFP1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "MTFP1-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS33635.1"; havana_gene "OTTHUMG00000151057.3"; havana_transcript "OTTHUMT00000321126.3"; +chr22 HAVANA transcript 30819763 30820397 . + . gene_id "ENSG00000242114.1"; transcript_id "ENST00000489658.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MTFP1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "MTFP1-002"; level 2; havana_gene "OTTHUMG00000151057.3"; havana_transcript "OTTHUMT00000321166.1"; +chr22 HAVANA transcript 30819764 30820397 . + . gene_id "ENSG00000242114.1"; transcript_id "ENST00000355143.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MTFP1"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "MTFP1-003"; level 2; tag "basic"; tag "CCDS"; ccdsid "CCDS33634.1"; havana_gene "OTTHUMG00000151057.3"; havana_transcript "OTTHUMT00000321167.1"; +chr22 HAVANA transcript 30819768 30820397 . + . gene_id "ENSG00000242114.1"; transcript_id "ENST00000412752.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MTFP1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "MTFP1-004"; level 2; havana_gene "OTTHUMG00000151057.3"; havana_transcript "OTTHUMT00000321168.1"; +chr22 HAVANA transcript 30819805 30820397 . + . gene_id "ENSG00000242114.1"; transcript_id "ENST00000407550.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MTFP1"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "MTFP1-005"; level 2; tag "basic"; havana_gene "OTTHUMG00000151057.3"; havana_transcript "OTTHUMT00000321169.1"; +chr22 HAVANA transcript 31004005 31004382 . - . gene_id "ENSG00000100029.13"; transcript_id "ENST00000402281.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PES1"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "PES1-003"; level 2; tag "alternative_5_UTR"; tag "basic"; havana_gene "OTTHUMG00000151077.4"; havana_transcript "OTTHUMT00000321191.2"; +chr22 HAVANA transcript 31004005 31004382 . - . gene_id "ENSG00000100029.13"; transcript_id "ENST00000405677.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PES1"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "PES1-002"; level 1; tag "basic"; tag "exp_conf"; havana_gene "OTTHUMG00000151077.4"; havana_transcript "OTTHUMT00000321189.2"; +chr22 HAVANA transcript 30987868 30987872 . - . gene_id "ENSG00000100029.13"; transcript_id "ENST00000402284.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PES1"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "PES1-004"; level 2; tag "basic"; havana_gene "OTTHUMG00000151077.4"; havana_transcript "OTTHUMT00000321192.1"; +chr22 HAVANA transcript 30987846 30987872 . - . gene_id "ENSG00000100029.13"; transcript_id "ENST00000335214.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PES1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PES1-005"; level 2; tag "basic"; tag "appris_candidate"; tag "CCDS"; ccdsid "CCDS58802.1"; havana_gene "OTTHUMG00000151077.4"; havana_transcript "OTTHUMT00000321193.1"; +chr22 HAVANA transcript 30987854 30987872 . - . gene_id "ENSG00000100029.13"; transcript_id "ENST00000406208.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PES1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "PES1-010"; level 2; havana_gene "OTTHUMG00000151077.4"; havana_transcript "OTTHUMT00000321254.2"; +chr22 HAVANA transcript 30987866 30987872 . - . gene_id "ENSG00000100029.13"; transcript_id "ENST00000433575.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PES1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "PES1-009"; level 1; tag "exp_conf"; havana_gene "OTTHUMG00000151077.4"; havana_transcript "OTTHUMT00000321253.1"; +chr22 HAVANA transcript 31004005 31004382 . - . gene_id "ENSG00000100029.13"; transcript_id "ENST00000467368.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PES1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "PES1-012"; level 1; tag "exp_conf"; havana_gene "OTTHUMG00000151077.4"; havana_transcript "OTTHUMT00000321256.1"; +chr22 HAVANA transcript 31004005 31004382 . - . gene_id "ENSG00000100029.13"; transcript_id "ENST00000492986.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PES1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "PES1-007"; level 2; tag "basic"; havana_gene "OTTHUMG00000151077.4"; havana_transcript "OTTHUMT00000321195.2"; +chr22 HAVANA transcript 31030304 31030699 . + . gene_id "ENSG00000100036.11"; transcript_id "ENST00000343605.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SLC35E4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SLC35E4-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13882.1"; havana_gene "OTTHUMG00000151110.1"; havana_transcript "OTTHUMT00000321382.1"; +chr22 ENSEMBL transcript 31030304 31030699 . + . gene_id "ENSG00000100036.11"; transcript_id "ENST00000300385.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SLC35E4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SLC35E4-201"; level 3; tag "basic"; havana_gene "OTTHUMG00000151110.1"; +chr22 HAVANA transcript 31030310 31030699 . + . gene_id "ENSG00000100036.11"; transcript_id "ENST00000406566.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SLC35E4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SLC35E4-002"; level 2; tag "basic"; havana_gene "OTTHUMG00000151110.1"; havana_transcript "OTTHUMT00000321383.1"; +chr22 HAVANA transcript 31030510 31030699 . + . gene_id "ENSG00000100036.11"; transcript_id "ENST00000451479.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SLC35E4"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "SLC35E4-003"; level 2; tag "mRNA_start_NF"; tag "cds_start_NF"; havana_gene "OTTHUMG00000151110.1"; havana_transcript "OTTHUMT00000321384.1"; +chr22 HAVANA transcript 31364976 31365252 . - . gene_id "ENSG00000133422.8"; transcript_id "ENST00000397641.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MORC2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "MORC2-001"; level 2; tag "basic"; tag "appris_principal"; havana_gene "OTTHUMG00000151193.4"; havana_transcript "OTTHUMT00000321710.2"; +chr22 HAVANA transcript 31364976 31365252 . - . gene_id "ENSG00000133422.8"; transcript_id "ENST00000215862.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MORC2"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "MORC2-002"; level 2; tag "basic"; tag "CCDS"; ccdsid "CCDS33636.1"; havana_gene "OTTHUMG00000151193.4"; havana_transcript "OTTHUMT00000321711.1"; +chr22 HAVANA transcript 31364976 31365252 . + . gene_id "ENSG00000253352.4"; transcript_id "ENST00000540687.1"; gene_type "antisense"; gene_status "KNOWN"; gene_name "TUG1"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "TUG1-003"; level 2; tag "basic"; havana_gene "OTTHUMG00000030444.4"; havana_transcript "OTTHUMT00000431950.1"; +chr22 HAVANA transcript 31365034 31365252 . + . gene_id "ENSG00000253352.4"; transcript_id "ENST00000566220.1"; gene_type "antisense"; gene_status "KNOWN"; gene_name "TUG1"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "TUG1-001"; level 2; tag "basic"; havana_gene "OTTHUMG00000030444.4"; havana_transcript "OTTHUMT00000075332.3"; +chr22 HAVANA transcript 31365052 31365252 . + . gene_id "ENSG00000253352.4"; transcript_id "ENST00000519077.3"; gene_type "antisense"; gene_status "KNOWN"; gene_name "TUG1"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "TUG1-006"; level 2; tag "basic"; havana_gene "OTTHUMG00000030444.4"; havana_transcript "OTTHUMT00000431951.2"; +chr22 HAVANA transcript 31480672 31480948 . + . gene_id "ENSG00000183963.14"; transcript_id "ENST00000416786.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SMTN"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "SMTN-018"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000151203.4"; havana_transcript "OTTHUMT00000321800.1"; +chr22 HAVANA transcript 31480672 31480948 . - . gene_id "ENSG00000273387.1"; transcript_id "ENST00000609017.1"; gene_type "antisense"; gene_status "NOVEL"; gene_name "RP3-412A9.16"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "RP3-412A9.16-001"; level 2; tag "basic"; havana_gene "OTTHUMG00000186126.1"; havana_transcript "OTTHUMT00000472296.1"; +chr22 HAVANA transcript 31481119 31481395 . - . gene_id "ENSG00000273387.1"; transcript_id "ENST00000609017.1"; gene_type "antisense"; gene_status "NOVEL"; gene_name "RP3-412A9.16"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "RP3-412A9.16-001"; level 2; tag "basic"; havana_gene "OTTHUMG00000186126.1"; havana_transcript "OTTHUMT00000472296.1"; +chr22 HAVANA transcript 31503702 31503978 . - . gene_id "ENSG00000198832.6"; transcript_id "ENST00000490967.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SELM"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "SELM-003"; level 2; havana_gene "OTTHUMG00000151207.1"; havana_transcript "OTTHUMT00000321790.1"; +chr22 HAVANA transcript 31503702 31503978 . - . gene_id "ENSG00000198832.6"; transcript_id "ENST00000400299.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SELM"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SELM-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; tag "seleno"; ccdsid "CCDS43003.1"; havana_gene "OTTHUMG00000151207.1"; havana_transcript "OTTHUMT00000321788.1"; +chr22 HAVANA transcript 31503702 31503978 . - . gene_id "ENSG00000198832.6"; transcript_id "ENST00000465536.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SELM"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "SELM-006"; level 2; tag "basic"; havana_gene "OTTHUMG00000151207.1"; havana_transcript "OTTHUMT00000321793.1"; +chr22 HAVANA transcript 31503702 31503978 . - . gene_id "ENSG00000198832.6"; transcript_id "ENST00000491958.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SELM"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "SELM-005"; level 2; havana_gene "OTTHUMG00000151207.1"; havana_transcript "OTTHUMT00000321792.1"; +chr22 HAVANA transcript 31503702 31503750 . - . gene_id "ENSG00000198832.6"; transcript_id "ENST00000495533.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SELM"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "SELM-009"; level 2; havana_gene "OTTHUMG00000151207.1"; havana_transcript "OTTHUMT00000321796.1"; +chr22 HAVANA transcript 31503702 31503978 . - . gene_id "ENSG00000198832.6"; transcript_id "ENST00000460642.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SELM"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "SELM-007"; level 2; havana_gene "OTTHUMG00000151207.1"; havana_transcript "OTTHUMT00000321794.1"; +chr22 HAVANA transcript 31503702 31503978 . - . gene_id "ENSG00000198832.6"; transcript_id "ENST00000469262.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SELM"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "SELM-008"; level 2; havana_gene "OTTHUMG00000151207.1"; havana_transcript "OTTHUMT00000321795.1"; +chr22 HAVANA transcript 31503702 31503978 . - . gene_id "ENSG00000198832.6"; transcript_id "ENST00000465447.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SELM"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "SELM-004"; level 2; havana_gene "OTTHUMG00000151207.1"; havana_transcript "OTTHUMT00000321791.1"; +chr22 ENSEMBL transcript 31556106 31556212 . - . gene_id "ENSG00000264141.1"; transcript_id "ENST00000583386.1"; gene_type "miRNA"; gene_status "KNOWN"; gene_name "MIR3928"; transcript_type "miRNA"; transcript_status "KNOWN"; transcript_name "MIR3928-201"; level 3; tag "basic"; +chr22 ENSEMBL transcript 31555919 31556167 . + . gene_id "ENSG00000138942.11"; transcript_id "ENST00000426256.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RNF185"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RNF185-201"; level 3; tag "basic"; havana_gene "OTTHUMG00000151253.3"; +chr22 HAVANA transcript 31555919 31556168 . + . gene_id "ENSG00000138942.11"; transcript_id "ENST00000494514.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RNF185"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "RNF185-004"; level 2; havana_gene "OTTHUMG00000151253.3"; havana_transcript "OTTHUMT00000321930.1"; +chr22 HAVANA transcript 31555919 31556178 . + . gene_id "ENSG00000138942.11"; transcript_id "ENST00000326132.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RNF185"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RNF185-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13890.1"; havana_gene "OTTHUMG00000151253.3"; havana_transcript "OTTHUMT00000321927.2"; +chr22 HAVANA transcript 31555919 31556193 . + . gene_id "ENSG00000138942.11"; transcript_id "ENST00000471384.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RNF185"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "RNF185-003"; level 2; havana_gene "OTTHUMG00000151253.3"; havana_transcript "OTTHUMT00000321929.1"; +chr22 HAVANA transcript 31555919 31556196 . + . gene_id "ENSG00000138942.11"; transcript_id "ENST00000518626.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RNF185"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "RNF185-007"; level 2; tag "CCDS"; ccdsid "CCDS13890.1"; havana_gene "OTTHUMG00000151253.3"; havana_transcript "OTTHUMT00000380432.1"; +chr22 HAVANA transcript 31555919 31556212 . + . gene_id "ENSG00000138942.11"; transcript_id "ENST00000468921.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RNF185"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "RNF185-005"; level 2; havana_gene "OTTHUMG00000151253.3"; havana_transcript "OTTHUMT00000321931.1"; +chr22 HAVANA transcript 31555919 31556212 . + . gene_id "ENSG00000138942.11"; transcript_id "ENST00000266252.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RNF185"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "RNF185-002"; level 2; tag "basic"; tag "CCDS"; ccdsid "CCDS46689.1"; havana_gene "OTTHUMG00000151253.3"; havana_transcript "OTTHUMT00000321928.1"; +chr22 HAVANA transcript 31608092 31608224 . + . gene_id "ENSG00000182541.13"; transcript_id "ENST00000462625.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "LIMK2"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "LIMK2-006"; level 2; havana_gene "OTTHUMG00000151251.1"; havana_transcript "OTTHUMT00000321916.1"; +chr22 HAVANA transcript 31608092 31608259 . + . gene_id "ENSG00000182541.13"; transcript_id "ENST00000406516.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "LIMK2"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "LIMK2-002"; level 2; tag "basic"; havana_gene "OTTHUMG00000151251.1"; havana_transcript "OTTHUMT00000321912.1"; +chr22 ENSEMBL transcript 31608092 31608264 . + . gene_id "ENSG00000182541.13"; transcript_id "ENST00000444929.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "LIMK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "LIMK2-201"; level 3; tag "basic"; havana_gene "OTTHUMG00000151251.1"; +chr22 HAVANA transcript 31608092 31608280 . + . gene_id "ENSG00000182541.13"; transcript_id "ENST00000331728.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "LIMK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "LIMK2-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13891.1"; havana_gene "OTTHUMG00000151251.1"; havana_transcript "OTTHUMT00000321911.1"; +chr22 HAVANA transcript 31688515 31688644 . - . gene_id "ENSG00000100100.8"; transcript_id "ENST00000215912.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PIK3IP1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PIK3IP1-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13893.1"; havana_gene "OTTHUMG00000151256.1"; havana_transcript "OTTHUMT00000321939.1"; +chr22 HAVANA transcript 31686762 31687074 . - . gene_id "ENSG00000100100.8"; transcript_id "ENST00000480654.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PIK3IP1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "PIK3IP1-003"; level 2; havana_gene "OTTHUMG00000151256.1"; havana_transcript "OTTHUMT00000321941.1"; +chr22 HAVANA transcript 31688344 31688644 . - . gene_id "ENSG00000100100.8"; transcript_id "ENST00000480654.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PIK3IP1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "PIK3IP1-003"; level 2; havana_gene "OTTHUMG00000151256.1"; havana_transcript "OTTHUMT00000321941.1"; +chr22 ENSEMBL transcript 31688521 31688644 . - . gene_id "ENSG00000100100.8"; transcript_id "ENST00000441972.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PIK3IP1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PIK3IP1-201"; level 3; tag "basic"; tag "CCDS"; ccdsid "CCDS46690.1"; havana_gene "OTTHUMG00000151256.1"; +chr22 HAVANA transcript 31686762 31687074 . - . gene_id "ENSG00000100100.8"; transcript_id "ENST00000493034.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PIK3IP1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "PIK3IP1-004"; level 2; havana_gene "OTTHUMG00000151256.1"; havana_transcript "OTTHUMT00000321942.1"; +chr22 HAVANA transcript 31688344 31688644 . - . gene_id "ENSG00000100100.8"; transcript_id "ENST00000493034.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PIK3IP1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "PIK3IP1-004"; level 2; havana_gene "OTTHUMG00000151256.1"; havana_transcript "OTTHUMT00000321942.1"; +chr22 ENSEMBL transcript 31688382 31688644 . - . gene_id "ENSG00000100100.8"; transcript_id "ENST00000487265.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PIK3IP1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PIK3IP1-202"; level 3; tag "basic"; havana_gene "OTTHUMG00000151256.1"; +chr22 HAVANA transcript 31688466 31688644 . - . gene_id "ENSG00000100100.8"; transcript_id "ENST00000402249.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PIK3IP1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PIK3IP1-002"; level 2; tag "basic"; havana_gene "OTTHUMG00000151256.1"; havana_transcript "OTTHUMT00000321940.1"; +chr22 HAVANA transcript 31688475 31688644 . - . gene_id "ENSG00000100100.8"; transcript_id "ENST00000443175.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PIK3IP1"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "PIK3IP1-005"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000151256.1"; havana_transcript "OTTHUMT00000321943.1"; +chr22 HAVANA transcript 31686762 31687074 . + . gene_id "ENSG00000228839.1"; transcript_id "ENST00000440456.1"; gene_type "antisense"; gene_status "NOVEL"; gene_name "RP3-400N23.6"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "RP3-400N23.6-001"; level 1; tag "basic"; tag "exp_conf"; havana_gene "OTTHUMG00000151249.1"; havana_transcript "OTTHUMT00000321908.1"; +chr22 HAVANA transcript 31688344 31688484 . + . gene_id "ENSG00000228839.1"; transcript_id "ENST00000440456.1"; gene_type "antisense"; gene_status "NOVEL"; gene_name "RP3-400N23.6"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "RP3-400N23.6-001"; level 1; tag "basic"; tag "exp_conf"; havana_gene "OTTHUMG00000151249.1"; havana_transcript "OTTHUMT00000321908.1"; +chr22 HAVANA transcript 31742238 31742514 . - . gene_id "ENSG00000100105.13"; transcript_id "ENST00000266269.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PATZ1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PATZ1-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13894.1"; havana_gene "OTTHUMG00000151254.1"; havana_transcript "OTTHUMT00000321932.1"; +chr22 HAVANA transcript 31743400 31743700 . - . gene_id "ENSG00000100105.13"; transcript_id "ENST00000266269.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PATZ1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PATZ1-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13894.1"; havana_gene "OTTHUMG00000151254.1"; havana_transcript "OTTHUMT00000321932.1"; +chr22 HAVANA transcript 31742238 31742514 . - . gene_id "ENSG00000100105.13"; transcript_id "ENST00000405309.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PATZ1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PATZ1-002"; level 2; tag "basic"; tag "CCDS"; ccdsid "CCDS46691.1"; havana_gene "OTTHUMG00000151254.1"; havana_transcript "OTTHUMT00000321933.1"; +chr22 HAVANA transcript 31743400 31743700 . - . gene_id "ENSG00000100105.13"; transcript_id "ENST00000405309.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PATZ1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PATZ1-002"; level 2; tag "basic"; tag "CCDS"; ccdsid "CCDS46691.1"; havana_gene "OTTHUMG00000151254.1"; havana_transcript "OTTHUMT00000321933.1"; +chr22 HAVANA transcript 31742238 31742514 . - . gene_id "ENSG00000100105.13"; transcript_id "ENST00000351933.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PATZ1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PATZ1-004"; level 2; tag "basic"; tag "CCDS"; ccdsid "CCDS13895.1"; havana_gene "OTTHUMG00000151254.1"; havana_transcript "OTTHUMT00000321935.1"; +chr22 HAVANA transcript 31743400 31743700 . - . gene_id "ENSG00000100105.13"; transcript_id "ENST00000351933.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PATZ1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PATZ1-004"; level 2; tag "basic"; tag "CCDS"; ccdsid "CCDS13895.1"; havana_gene "OTTHUMG00000151254.1"; havana_transcript "OTTHUMT00000321935.1"; +chr22 HAVANA transcript 31741790 31742090 . - . gene_id "ENSG00000100105.13"; transcript_id "ENST00000215919.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PATZ1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PATZ1-003"; level 2; tag "basic"; tag "CCDS"; ccdsid "CCDS13896.1"; havana_gene "OTTHUMG00000151254.1"; havana_transcript "OTTHUMT00000321934.1"; +chr22 HAVANA transcript 31742238 31742514 . - . gene_id "ENSG00000100105.13"; transcript_id "ENST00000215919.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PATZ1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PATZ1-003"; level 2; tag "basic"; tag "CCDS"; ccdsid "CCDS13896.1"; havana_gene "OTTHUMG00000151254.1"; havana_transcript "OTTHUMT00000321934.1"; +chr22 HAVANA transcript 31743400 31743700 . - . gene_id "ENSG00000100105.13"; transcript_id "ENST00000215919.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PATZ1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PATZ1-003"; level 2; tag "basic"; tag "CCDS"; ccdsid "CCDS13896.1"; havana_gene "OTTHUMG00000151254.1"; havana_transcript "OTTHUMT00000321934.1"; +chr22 ENSEMBL transcript 31741790 31742090 . + . gene_id "ENSG00000213888.2"; transcript_id "ENST00000504184.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AC005003.1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AC005003.1-201"; level 3; tag "basic"; tag "appris_principal"; +chr22 ENSEMBL transcript 31742238 31742514 . + . gene_id "ENSG00000213888.2"; transcript_id "ENST00000504184.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AC005003.1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AC005003.1-201"; level 3; tag "basic"; tag "appris_principal"; +chr22 HAVANA transcript 31795452 31795508 . + . gene_id "ENSG00000185721.7"; transcript_id "ENST00000331457.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "DRG1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "DRG1-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13897.1"; havana_gene "OTTHUMG00000030792.11"; havana_transcript "OTTHUMT00000075680.5"; +chr22 HAVANA transcript 31795452 31795595 . + . gene_id "ENSG00000185721.7"; transcript_id "ENST00000416465.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "DRG1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "DRG1-004"; level 2; havana_gene "OTTHUMG00000030792.11"; havana_transcript "OTTHUMT00000145209.6"; +chr22 HAVANA transcript 31795452 31795602 . + . gene_id "ENSG00000185721.7"; transcript_id "ENST00000433341.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "DRG1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "DRG1-002"; level 2; tag "basic"; havana_gene "OTTHUMG00000030792.11"; havana_transcript "OTTHUMT00000129109.3"; +chr22 HAVANA transcript 31795452 31795618 . + . gene_id "ENSG00000185721.7"; transcript_id "ENST00000486584.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "DRG1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "DRG1-006"; level 2; tag "not_organism_supported"; tag "NMD_likely_if_extended"; havana_gene "OTTHUMG00000030792.11"; havana_transcript "OTTHUMT00000319107.1"; +chr22 HAVANA transcript 31886062 31886338 . - . gene_id "ENSG00000184708.13"; transcript_id "ENST00000344710.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EIF4ENIF1"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "EIF4ENIF1-001"; level 1; tag "basic"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS54520.1"; havana_gene "OTTHUMG00000030793.10"; havana_transcript "OTTHUMT00000127925.1"; +chr22 HAVANA transcript 31886397 31886900 . - . gene_id "ENSG00000184708.13"; transcript_id "ENST00000344710.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EIF4ENIF1"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "EIF4ENIF1-001"; level 1; tag "basic"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS54520.1"; havana_gene "OTTHUMG00000030793.10"; havana_transcript "OTTHUMT00000127925.1"; +chr22 HAVANA transcript 31886062 31886338 . - . gene_id "ENSG00000184708.13"; transcript_id "ENST00000397525.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EIF4ENIF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EIF4ENIF1-003"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13898.1"; havana_gene "OTTHUMG00000030793.10"; havana_transcript "OTTHUMT00000127926.1"; +chr22 HAVANA transcript 31886397 31886900 . - . gene_id "ENSG00000184708.13"; transcript_id "ENST00000397525.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EIF4ENIF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EIF4ENIF1-003"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13898.1"; havana_gene "OTTHUMG00000030793.10"; havana_transcript "OTTHUMT00000127926.1"; +chr22 HAVANA transcript 31886062 31886338 . - . gene_id "ENSG00000184708.13"; transcript_id "ENST00000330125.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EIF4ENIF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EIF4ENIF1-002"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13898.1"; havana_gene "OTTHUMG00000030793.10"; havana_transcript "OTTHUMT00000075681.4"; +chr22 HAVANA transcript 31886397 31886900 . - . gene_id "ENSG00000184708.13"; transcript_id "ENST00000330125.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EIF4ENIF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EIF4ENIF1-002"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13898.1"; havana_gene "OTTHUMG00000030793.10"; havana_transcript "OTTHUMT00000075681.4"; +chr22 HAVANA transcript 31886062 31886338 . - . gene_id "ENSG00000184708.13"; transcript_id "ENST00000397523.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EIF4ENIF1"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "EIF4ENIF1-005"; level 2; tag "not_organism_supported"; tag "basic"; havana_gene "OTTHUMG00000030793.10"; havana_transcript "OTTHUMT00000127928.1"; +chr22 HAVANA transcript 31886397 31886731 . - . gene_id "ENSG00000184708.13"; transcript_id "ENST00000397523.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EIF4ENIF1"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "EIF4ENIF1-005"; level 2; tag "not_organism_supported"; tag "basic"; havana_gene "OTTHUMG00000030793.10"; havana_transcript "OTTHUMT00000127928.1"; +chr22 HAVANA transcript 31886062 31886338 . - . gene_id "ENSG00000184708.13"; transcript_id "ENST00000423097.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EIF4ENIF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EIF4ENIF1-006"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000030793.10"; havana_transcript "OTTHUMT00000127929.2"; +chr22 HAVANA transcript 31886397 31886900 . - . gene_id "ENSG00000184708.13"; transcript_id "ENST00000423097.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EIF4ENIF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EIF4ENIF1-006"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000030793.10"; havana_transcript "OTTHUMT00000127929.2"; +chr22 HAVANA transcript 31886062 31886338 . - . gene_id "ENSG00000184708.13"; transcript_id "ENST00000397518.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EIF4ENIF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EIF4ENIF1-009"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000030793.10"; havana_transcript "OTTHUMT00000268200.1"; +chr22 HAVANA transcript 31886397 31886900 . - . gene_id "ENSG00000184708.13"; transcript_id "ENST00000397518.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EIF4ENIF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EIF4ENIF1-009"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000030793.10"; havana_transcript "OTTHUMT00000268200.1"; +chr22 HAVANA transcript 31892173 31892479 . - . gene_id "ENSG00000184708.13"; transcript_id "ENST00000397520.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EIF4ENIF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EIF4ENIF1-008"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000030793.10"; havana_transcript "OTTHUMT00000258052.1"; +chr22 HAVANA transcript 31892173 31892260 . + . gene_id "ENSG00000198089.10"; transcript_id "ENST00000432498.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SFI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SFI1-001"; level 1; tag "basic"; tag "appris_candidate"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS43005.1"; havana_gene "OTTHUMG00000030249.13"; havana_transcript "OTTHUMT00000075103.4"; +chr22 ENSEMBL transcript 31892173 31892260 . + . gene_id "ENSG00000198089.10"; transcript_id "ENST00000540643.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SFI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SFI1-203"; level 3; tag "basic"; tag "CCDS"; ccdsid "CCDS58803.1"; havana_gene "OTTHUMG00000030249.13"; +chr22 HAVANA transcript 31892173 31892260 . + . gene_id "ENSG00000198089.10"; transcript_id "ENST00000443326.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SFI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SFI1-202"; level 2; tag "basic"; tag "CCDS"; ccdsid "CCDS58804.1"; havana_gene "OTTHUMG00000030249.13"; havana_transcript "OTTHUMT00000315708.4"; +chr22 ENSEMBL transcript 31892173 31892260 . + . gene_id "ENSG00000198089.10"; transcript_id "ENST00000414585.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SFI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SFI1-201"; level 3; tag "basic"; havana_gene "OTTHUMG00000030249.13"; +chr22 HAVANA transcript 31892173 31892372 . + . gene_id "ENSG00000198089.10"; transcript_id "ENST00000443011.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SFI1"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "SFI1-026"; level 2; tag "basic"; havana_gene "OTTHUMG00000030249.13"; havana_transcript "OTTHUMT00000342496.2"; +chr22 HAVANA transcript 31892173 31892449 . + . gene_id "ENSG00000198089.10"; transcript_id "ENST00000465437.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SFI1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "SFI1-028"; level 2; havana_gene "OTTHUMG00000030249.13"; havana_transcript "OTTHUMT00000353252.1"; +chr22 HAVANA transcript 31892173 31892479 . + . gene_id "ENSG00000198089.10"; transcript_id "ENST00000411518.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SFI1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "SFI1-017"; level 2; havana_gene "OTTHUMG00000030249.13"; havana_transcript "OTTHUMT00000315711.3"; +chr22 HAVANA transcript 31892173 31892479 . + . gene_id "ENSG00000198089.10"; transcript_id "ENST00000400289.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SFI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SFI1-014"; level 2; tag "basic"; tag "CCDS"; ccdsid "CCDS58804.1"; havana_gene "OTTHUMG00000030249.13"; havana_transcript "OTTHUMT00000315708.4"; +chr22 HAVANA transcript 31892173 31892479 . + . gene_id "ENSG00000198089.10"; transcript_id "ENST00000444859.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SFI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SFI1-015"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000030249.13"; havana_transcript "OTTHUMT00000315709.1"; +chr22 HAVANA transcript 31892173 31892479 . + . gene_id "ENSG00000198089.10"; transcript_id "ENST00000400288.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SFI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SFI1-023"; level 2; tag "basic"; tag "appris_candidate_longest"; tag "CCDS"; ccdsid "CCDS43004.1"; havana_gene "OTTHUMG00000030249.13"; havana_transcript "OTTHUMT00000337180.3"; +chr22 HAVANA transcript 31892173 31892479 . + . gene_id "ENSG00000198089.10"; transcript_id "ENST00000382162.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SFI1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "SFI1-002"; level 2; havana_gene "OTTHUMG00000030249.13"; havana_transcript "OTTHUMT00000127931.2"; +chr22 HAVANA transcript 31978504 31978814 . + . gene_id "ENSG00000198089.10"; transcript_id "ENST00000425671.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SFI1"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "SFI1-009"; level 1; tag "mRNA_start_NF"; tag "cds_start_NF"; tag "exp_conf"; havana_gene "OTTHUMG00000030249.13"; havana_transcript "OTTHUMT00000127938.2"; +chr22 HAVANA transcript 31934806 31935147 . - . gene_id "ENSG00000229169.1"; transcript_id "ENST00000416920.1"; gene_type "pseudogene"; gene_status "KNOWN"; gene_name "RP11-247I13.6"; transcript_type "processed_pseudogene"; transcript_status "KNOWN"; transcript_name "RP11-247I13.6-006"; level 1; ont "PGO:0000004"; tag "pseudo_consens"; havana_gene "OTTHUMG00000030797.2"; havana_transcript "OTTHUMT00000075685.2"; +chr22 HAVANA transcript 32058202 32058325 . - . gene_id "ENSG00000241878.5"; transcript_id "ENST00000460723.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PISD"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "PISD-002"; level 2; havana_gene "OTTHUMG00000030252.27"; havana_transcript "OTTHUMT00000127971.2"; +chr22 HAVANA transcript 32058208 32058325 . - . gene_id "ENSG00000241878.5"; transcript_id "ENST00000437808.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PISD"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "PISD-017"; level 2; havana_gene "OTTHUMG00000030252.27"; havana_transcript "OTTHUMT00000337183.1"; +chr22 HAVANA transcript 32058167 32058325 . - . gene_id "ENSG00000241878.5"; transcript_id "ENST00000435900.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PISD"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "PISD-004"; level 2; tag "mRNA_start_NF"; tag "cds_start_NF"; havana_gene "OTTHUMG00000030252.27"; havana_transcript "OTTHUMT00000127973.1"; +chr22 ENSEMBL transcript 32058195 32058325 . - . gene_id "ENSG00000241878.5"; transcript_id "ENST00000336566.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PISD"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PISD-202"; level 3; tag "basic"; havana_gene "OTTHUMG00000030252.27"; +chr22 HAVANA transcript 32058190 32058325 . - . gene_id "ENSG00000241878.5"; transcript_id "ENST00000474017.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PISD"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "PISD-003"; level 2; havana_gene "OTTHUMG00000030252.27"; havana_transcript "OTTHUMT00000127972.1"; +chr22 HAVANA transcript 32034385 32034647 . - . gene_id "ENSG00000241878.5"; transcript_id "ENST00000491342.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PISD"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "PISD-011"; level 2; havana_gene "OTTHUMG00000030252.27"; havana_transcript "OTTHUMT00000127980.2"; +chr22 HAVANA transcript 32034392 32034647 . - . gene_id "ENSG00000241878.5"; transcript_id "ENST00000431201.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PISD"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PISD-010"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000030252.27"; havana_transcript "OTTHUMT00000127979.2"; +chr22 HAVANA transcript 32034432 32034647 . - . gene_id "ENSG00000241878.5"; transcript_id "ENST00000429683.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PISD"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PISD-009"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000030252.27"; havana_transcript "OTTHUMT00000127978.23"; +chr22 ENSEMBL transcript 32146121 32146218 . - . gene_id "ENSG00000183530.9"; transcript_id "ENST00000397493.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PRR14L"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PRR14L-201"; level 3; tag "basic"; havana_gene "OTTHUMG00000030139.14"; +chr22 HAVANA transcript 32146118 32146218 . - . gene_id "ENSG00000183530.9"; transcript_id "ENST00000327423.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PRR14L"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "PRR14L-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13900.2"; havana_gene "OTTHUMG00000030139.14"; havana_transcript "OTTHUMT00000074993.2"; +chr22 ENSEMBL transcript 32146121 32146218 . - . gene_id "ENSG00000183530.9"; transcript_id "ENST00000434485.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PRR14L"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PRR14L-202"; level 3; tag "basic"; havana_gene "OTTHUMG00000030139.14"; +chr22 HAVANA transcript 32146059 32146218 . - . gene_id "ENSG00000183530.9"; transcript_id "ENST00000461722.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PRR14L"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "PRR14L-005"; level 2; tag "basic"; havana_gene "OTTHUMG00000030139.14"; havana_transcript "OTTHUMT00000129080.2"; +chr22 HAVANA transcript 32146127 32146218 . - . gene_id "ENSG00000183530.9"; transcript_id "ENST00000412743.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PRR14L"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "PRR14L-007"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000030139.14"; havana_transcript "OTTHUMT00000129082.2"; +chr22 HAVANA transcript 32149595 32149871 . + . gene_id "ENSG00000100150.12"; transcript_id "ENST00000437411.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "DEPDC5"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "DEPDC5-012"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000030926.15"; havana_transcript "OTTHUMT00000156157.2"; +chr22 HAVANA transcript 32149595 32149871 . + . gene_id "ENSG00000100150.12"; transcript_id "ENST00000469969.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "DEPDC5"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "DEPDC5-013"; level 2; havana_gene "OTTHUMG00000030926.15"; havana_transcript "OTTHUMT00000315729.1"; +chr22 HAVANA transcript 32149595 32149871 . + . gene_id "ENSG00000100150.12"; transcript_id "ENST00000456178.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "DEPDC5"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "DEPDC5-014"; level 2; havana_gene "OTTHUMG00000030926.15"; havana_transcript "OTTHUMT00000315730.2"; +chr22 ENSEMBL transcript 32149595 32149871 . + . gene_id "ENSG00000100150.12"; transcript_id "ENST00000535622.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "DEPDC5"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "DEPDC5-205"; level 3; tag "basic"; tag "CCDS"; ccdsid "CCDS56229.1"; havana_gene "OTTHUMG00000030926.15"; +chr22 ENSEMBL transcript 32149595 32149871 . + . gene_id "ENSG00000100150.12"; transcript_id "ENST00000536766.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "DEPDC5"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "DEPDC5-206"; level 3; tag "basic"; havana_gene "OTTHUMG00000030926.15"; +chr22 HAVANA transcript 32149595 32149871 . + . gene_id "ENSG00000100150.12"; transcript_id "ENST00000400242.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "DEPDC5"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "DEPDC5-002"; level 2; tag "basic"; tag "CCDS"; ccdsid "CCDS43007.1"; havana_gene "OTTHUMG00000030926.15"; havana_transcript "OTTHUMT00000129083.2"; +chr22 ENSEMBL transcript 32149595 32149871 . + . gene_id "ENSG00000100150.12"; transcript_id "ENST00000266091.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "DEPDC5"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "DEPDC5-201"; level 3; tag "basic"; havana_gene "OTTHUMG00000030926.15"; +chr22 ENSEMBL transcript 32149595 32149871 . + . gene_id "ENSG00000100150.12"; transcript_id "ENST00000400249.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "DEPDC5"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "DEPDC5-204"; level 3; tag "basic"; tag "CCDS"; ccdsid "CCDS43006.1"; havana_gene "OTTHUMG00000030926.15"; +chr22 ENSEMBL transcript 32149595 32149871 . + . gene_id "ENSG00000100150.12"; transcript_id "ENST00000400246.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "DEPDC5"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "DEPDC5-203"; level 3; tag "basic"; havana_gene "OTTHUMG00000030926.15"; +chr22 ENSEMBL transcript 32149595 32149871 . + . gene_id "ENSG00000100150.12"; transcript_id "ENST00000382105.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "DEPDC5"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "DEPDC5-202"; level 3; tag "basic"; havana_gene "OTTHUMG00000030926.15"; +chr22 HAVANA transcript 32149595 32149871 . + . gene_id "ENSG00000100150.12"; transcript_id "ENST00000382112.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "DEPDC5"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "DEPDC5-006"; level 2; tag "not_organism_supported"; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS46692.1"; havana_gene "OTTHUMG00000030926.15"; havana_transcript "OTTHUMT00000129087.1"; +chr22 HAVANA transcript 32149595 32149871 . + . gene_id "ENSG00000100150.12"; transcript_id "ENST00000382111.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "DEPDC5"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "DEPDC5-004"; level 2; tag "not_organism_supported"; tag "basic"; havana_gene "OTTHUMG00000030926.15"; havana_transcript "OTTHUMT00000129085.1"; +chr22 HAVANA transcript 32149595 32149871 . + . gene_id "ENSG00000100150.12"; transcript_id "ENST00000400248.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "DEPDC5"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "DEPDC5-001"; level 2; tag "basic"; tag "CCDS"; ccdsid "CCDS43006.1"; havana_gene "OTTHUMG00000030926.15"; havana_transcript "OTTHUMT00000075814.4"; +chr22 HAVANA transcript 32340433 32340446 . + . gene_id "ENSG00000128245.10"; transcript_id "ENST00000248975.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "YWHAH"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "YWHAH-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13901.1"; havana_gene "OTTHUMG00000030833.8"; havana_transcript "OTTHUMT00000075721.2"; +chr22 HAVANA transcript 32340433 32340507 . + . gene_id "ENSG00000128245.10"; transcript_id "ENST00000443669.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "YWHAH"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "YWHAH-005"; level 2; havana_gene "OTTHUMG00000030833.8"; havana_transcript "OTTHUMT00000128922.6"; +chr22 HAVANA transcript 32340433 32340507 . + . gene_id "ENSG00000128245.10"; transcript_id "ENST00000397492.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "YWHAH"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "YWHAH-002"; level 1; tag "basic"; tag "exp_conf"; havana_gene "OTTHUMG00000030833.8"; havana_transcript "OTTHUMT00000128919.2"; +chr22 HAVANA transcript 32340433 32340709 . + . gene_id "ENSG00000128245.10"; transcript_id "ENST00000479649.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "YWHAH"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "YWHAH-006"; level 2; havana_gene "OTTHUMG00000030833.8"; havana_transcript "OTTHUMT00000319307.1"; +chr22 HAVANA transcript 32340433 32340709 . + . gene_id "ENSG00000128245.10"; transcript_id "ENST00000471374.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "YWHAH"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "YWHAH-003"; level 2; tag "basic"; havana_gene "OTTHUMG00000030833.8"; havana_transcript "OTTHUMT00000128920.2"; +chr22 HAVANA transcript 32808243 32808301 . - . gene_id "ENSG00000100220.7"; transcript_id "ENST00000216038.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RTCB"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RTCB-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13905.1"; havana_gene "OTTHUMG00000030300.7"; havana_transcript "OTTHUMT00000075188.3"; +chr22 ENSEMBL transcript 32808225 32808301 . - . gene_id "ENSG00000100220.7"; transcript_id "ENST00000451746.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RTCB"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RTCB-201"; level 3; tag "basic"; havana_gene "OTTHUMG00000030300.7"; +chr22 HAVANA transcript 32808229 32808301 . - . gene_id "ENSG00000100220.7"; transcript_id "ENST00000487704.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RTCB"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "RTCB-004"; level 2; havana_gene "OTTHUMG00000030300.7"; havana_transcript "OTTHUMT00000128995.1"; +chr22 HAVANA transcript 32808236 32808301 . - . gene_id "ENSG00000100220.7"; transcript_id "ENST00000463455.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RTCB"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "RTCB-003"; level 2; havana_gene "OTTHUMG00000030300.7"; havana_transcript "OTTHUMT00000128994.1"; +chr22 HAVANA transcript 32870698 32870784 . + . gene_id "ENSG00000100225.13"; transcript_id "ENST00000425028.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FBXO7"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "FBXO7-004"; level 2; havana_gene "OTTHUMG00000030674.9"; havana_transcript "OTTHUMT00000129003.6"; +chr22 HAVANA transcript 32870698 32870974 . + . gene_id "ENSG00000100225.13"; transcript_id "ENST00000492535.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FBXO7"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "FBXO7-005"; level 2; havana_gene "OTTHUMG00000030674.9"; havana_transcript "OTTHUMT00000129004.1"; +chr22 HAVANA transcript 32870698 32870974 . + . gene_id "ENSG00000100225.13"; transcript_id "ENST00000452138.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FBXO7"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "FBXO7-006"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000030674.9"; havana_transcript "OTTHUMT00000129005.2"; +chr22 ENSEMBL transcript 32870698 32870974 . + . gene_id "ENSG00000100225.13"; transcript_id "ENST00000382058.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FBXO7"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FBXO7-201"; level 3; tag "basic"; tag "CCDS"; ccdsid "CCDS46695.1"; havana_gene "OTTHUMG00000030674.9"; +chr22 HAVANA transcript 32870698 32870974 . + . gene_id "ENSG00000100225.13"; transcript_id "ENST00000397426.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FBXO7"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "FBXO7-002"; level 2; tag "basic"; tag "CCDS"; ccdsid "CCDS58806.1"; havana_gene "OTTHUMG00000030674.9"; havana_transcript "OTTHUMT00000075562.3"; +chr22 HAVANA transcript 32870698 32870974 . + . gene_id "ENSG00000100225.13"; transcript_id "ENST00000444207.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FBXO7"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "FBXO7-007"; level 1; tag "mRNA_end_NF"; tag "cds_end_NF"; tag "exp_conf"; havana_gene "OTTHUMG00000030674.9"; havana_transcript "OTTHUMT00000129006.2"; +chr22 HAVANA transcript 34316836 34317173 . - . gene_id "ENSG00000133424.16"; transcript_id "ENST00000354992.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "LARGE"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "LARGE-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13912.1"; havana_gene "OTTHUMG00000150914.18"; havana_transcript "OTTHUMT00000320515.2"; +chr22 ENSEMBL transcript 34316836 34317173 . - . gene_id "ENSG00000133424.16"; transcript_id "ENST00000337431.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "LARGE"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "LARGE-201"; level 3; tag "basic"; havana_gene "OTTHUMG00000150914.18"; +chr22 ENSEMBL transcript 34316836 34317173 . - . gene_id "ENSG00000133424.16"; transcript_id "ENST00000397394.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "LARGE"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "LARGE-202"; level 3; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13912.1"; havana_gene "OTTHUMG00000150914.18"; +chr22 HAVANA transcript 34316836 34317173 . - . gene_id "ENSG00000133424.16"; transcript_id "ENST00000402320.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "LARGE"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "LARGE-002"; level 2; tag "basic"; havana_gene "OTTHUMG00000150914.18"; havana_transcript "OTTHUMT00000320516.1"; +chr22 HAVANA transcript 33961612 33962085 . - . gene_id "ENSG00000133424.16"; transcript_id "ENST00000476315.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "LARGE"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "LARGE-011"; level 2; havana_gene "OTTHUMG00000150914.18"; havana_transcript "OTTHUMT00000320575.1"; +chr22 HAVANA transcript 34316836 34317173 . + . gene_id "ENSG00000273082.1"; transcript_id "ENST00000610170.1"; gene_type "antisense"; gene_status "NOVEL"; gene_name "LL22NC03-32F9.1"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "LL22NC03-32F9.1-001"; level 2; tag "basic"; havana_gene "OTTHUMG00000186104.1"; havana_transcript "OTTHUMT00000472261.1"; +chr22 HAVANA transcript 35460702 35461002 . + . gene_id "ENSG00000175329.8"; transcript_id "ENST00000404699.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ISX"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ISX-002"; level 2; tag "alternative_5_UTR"; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS33640.1"; havana_gene "OTTHUMG00000150962.2"; havana_transcript "OTTHUMT00000320663.2"; +chr22 HAVANA transcript 35460702 35461002 . + . gene_id "ENSG00000175329.8"; transcript_id "ENST00000308700.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ISX"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ISX-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS33640.1"; havana_gene "OTTHUMG00000150962.2"; havana_transcript "OTTHUMT00000320662.1"; +chr22 HAVANA transcript 35653216 35653444 . + . gene_id "ENSG00000100281.9"; transcript_id "ENST00000420166.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HMGXB4"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HMGXB4-004"; level 2; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000150439.2"; havana_transcript "OTTHUMT00000318106.2"; +chr22 HAVANA transcript 35653216 35653479 . + . gene_id "ENSG00000100281.9"; transcript_id "ENST00000418170.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HMGXB4"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "HMGXB4-001"; level 2; havana_gene "OTTHUMG00000150439.2"; havana_transcript "OTTHUMT00000318103.2"; +chr22 ENSEMBL transcript 35653216 35653479 . + . gene_id "ENSG00000100281.9"; transcript_id "ENST00000444518.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HMGXB4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HMGXB4-201"; level 3; tag "basic"; tag "appris_candidate"; havana_gene "OTTHUMG00000150439.2"; +chr22 HAVANA transcript 35653216 35653481 . + . gene_id "ENSG00000100281.9"; transcript_id "ENST00000466438.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HMGXB4"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "HMGXB4-005"; level 2; tag "basic"; havana_gene "OTTHUMG00000150439.2"; havana_transcript "OTTHUMT00000318107.1"; +chr22 HAVANA transcript 35653216 35653488 . + . gene_id "ENSG00000100281.9"; transcript_id "ENST00000455359.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HMGXB4"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HMGXB4-003"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000150439.2"; havana_transcript "OTTHUMT00000318105.2"; +chr22 HAVANA transcript 35653216 35653490 . + . gene_id "ENSG00000100281.9"; transcript_id "ENST00000216106.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HMGXB4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HMGXB4-002"; level 2; tag "basic"; tag "appris_candidate_longest"; tag "CCDS"; ccdsid "CCDS33641.1"; havana_gene "OTTHUMG00000150439.2"; havana_transcript "OTTHUMT00000318104.2"; +chr22 HAVANA transcript 35705569 35705965 . + . gene_id "ENSG00000100284.16"; transcript_id "ENST00000443206.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TOM1"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TOM1-012"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000150958.3"; havana_transcript "OTTHUMT00000320652.1"; +chr22 ENSEMBL transcript 35730043 35730371 . + . gene_id "ENSG00000266320.1"; transcript_id "ENST00000579518.1"; gene_type "miRNA"; gene_status "KNOWN"; gene_name "MIR3909"; transcript_type "miRNA"; transcript_status "KNOWN"; transcript_name "MIR3909-201"; level 3; tag "basic"; +chr22 HAVANA transcript 35806219 35806351 . + . gene_id "ENSG00000100297.11"; transcript_id "ENST00000464908.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MCM5"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "MCM5-007"; level 2; havana_gene "OTTHUMG00000150961.17"; havana_transcript "OTTHUMT00000320681.1"; +chr22 HAVANA transcript 35806219 35806401 . + . gene_id "ENSG00000100297.11"; transcript_id "ENST00000493076.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MCM5"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "MCM5-004"; level 2; havana_gene "OTTHUMG00000150961.17"; havana_transcript "OTTHUMT00000320678.1"; +chr22 HAVANA transcript 35806219 35806557 . + . gene_id "ENSG00000100297.11"; transcript_id "ENST00000493569.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MCM5"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "MCM5-005"; level 2; havana_gene "OTTHUMG00000150961.17"; havana_transcript "OTTHUMT00000320679.1"; +chr22 HAVANA transcript 35806219 35806557 . + . gene_id "ENSG00000100297.11"; transcript_id "ENST00000465557.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MCM5"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "MCM5-006"; level 2; tag "basic"; havana_gene "OTTHUMG00000150961.17"; havana_transcript "OTTHUMT00000320680.1"; +chr22 HAVANA transcript 36044350 36044441 . + . gene_id "ENSG00000221963.5"; transcript_id "ENST00000409652.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "APOL6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "APOL6-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13919.1"; havana_gene "OTTHUMG00000150615.2"; havana_transcript "OTTHUMT00000319081.2"; +chr22 HAVANA transcript 36145849 36146199 . - . gene_id "ENSG00000100320.18"; transcript_id "ENST00000463509.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RBFOX2"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "RBFOX2-011"; level 2; havana_gene "OTTHUMG00000150585.10"; havana_transcript "OTTHUMT00000319338.1"; +chr22 ENSEMBL transcript 36556978 36556999 . - . gene_id "ENSG00000128284.15"; transcript_id "ENST00000397293.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "APOL3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "APOL3-201"; level 3; tag "basic"; tag "appris_candidate"; havana_gene "OTTHUMG00000150632.19"; +chr22 ENSEMBL transcript 36558205 36558527 . - . gene_id "ENSG00000128284.15"; transcript_id "ENST00000397293.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "APOL3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "APOL3-201"; level 3; tag "basic"; tag "appris_candidate"; havana_gene "OTTHUMG00000150632.19"; +chr22 HAVANA transcript 36556978 36556999 . - . gene_id "ENSG00000128284.15"; transcript_id "ENST00000349314.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "APOL3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "APOL3-003"; level 2; tag "basic"; tag "appris_candidate_longest"; tag "CCDS"; ccdsid "CCDS13922.1"; havana_gene "OTTHUMG00000150632.19"; havana_transcript "OTTHUMT00000319268.1"; +chr22 HAVANA transcript 36558205 36558527 . - . gene_id "ENSG00000128284.15"; transcript_id "ENST00000349314.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "APOL3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "APOL3-003"; level 2; tag "basic"; tag "appris_candidate_longest"; tag "CCDS"; ccdsid "CCDS13922.1"; havana_gene "OTTHUMG00000150632.19"; havana_transcript "OTTHUMT00000319268.1"; +chr22 HAVANA transcript 36556978 36556999 . - . gene_id "ENSG00000128284.15"; transcript_id "ENST00000432700.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "APOL3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "APOL3-004"; level 2; havana_gene "OTTHUMG00000150632.19"; havana_transcript "OTTHUMT00000319269.18"; +chr22 HAVANA transcript 36558205 36558527 . - . gene_id "ENSG00000128284.15"; transcript_id "ENST00000432700.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "APOL3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "APOL3-004"; level 2; havana_gene "OTTHUMG00000150632.19"; havana_transcript "OTTHUMT00000319269.18"; +chr22 HAVANA transcript 36556978 36556999 . - . gene_id "ENSG00000128284.15"; transcript_id "ENST00000422426.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "APOL3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "APOL3-005"; level 2; havana_gene "OTTHUMG00000150632.19"; havana_transcript "OTTHUMT00000319270.1"; +chr22 HAVANA transcript 36558205 36558527 . - . gene_id "ENSG00000128284.15"; transcript_id "ENST00000422426.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "APOL3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "APOL3-005"; level 2; havana_gene "OTTHUMG00000150632.19"; havana_transcript "OTTHUMT00000319270.1"; +chr22 HAVANA transcript 36556978 36556999 . - . gene_id "ENSG00000128284.15"; transcript_id "ENST00000397289.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "APOL3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "APOL3-006"; level 2; havana_gene "OTTHUMG00000150632.19"; havana_transcript "OTTHUMT00000319271.1"; +chr22 HAVANA transcript 36558205 36558527 . - . gene_id "ENSG00000128284.15"; transcript_id "ENST00000397289.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "APOL3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "APOL3-006"; level 2; havana_gene "OTTHUMG00000150632.19"; havana_transcript "OTTHUMT00000319271.1"; +chr22 HAVANA transcript 36556804 36556999 . - . gene_id "ENSG00000128284.15"; transcript_id "ENST00000487355.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "APOL3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "APOL3-009"; level 2; tag "mRNA_start_NF"; tag "cds_start_NF"; havana_gene "OTTHUMG00000150632.19"; havana_transcript "OTTHUMT00000319274.2"; +chr22 HAVANA transcript 36558205 36558527 . - . gene_id "ENSG00000128284.15"; transcript_id "ENST00000487355.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "APOL3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "APOL3-009"; level 2; tag "mRNA_start_NF"; tag "cds_start_NF"; havana_gene "OTTHUMG00000150632.19"; havana_transcript "OTTHUMT00000319274.2"; +chr22 HAVANA transcript 36556803 36556999 . - . gene_id "ENSG00000128284.15"; transcript_id "ENST00000426939.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "APOL3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "APOL3-019"; level 2; tag "mRNA_start_NF"; tag "cds_start_NF"; havana_gene "OTTHUMG00000150632.19"; havana_transcript "OTTHUMT00000384098.1"; +chr22 HAVANA transcript 36558205 36558527 . - . gene_id "ENSG00000128284.15"; transcript_id "ENST00000426939.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "APOL3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "APOL3-019"; level 2; tag "mRNA_start_NF"; tag "cds_start_NF"; havana_gene "OTTHUMG00000150632.19"; havana_transcript "OTTHUMT00000384098.1"; +chr22 HAVANA transcript 36556803 36556999 . - . gene_id "ENSG00000128284.15"; transcript_id "ENST00000531195.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "APOL3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "APOL3-018"; level 2; tag "mRNA_start_NF"; tag "cds_start_NF"; havana_gene "OTTHUMG00000150632.19"; havana_transcript "OTTHUMT00000384100.1"; +chr22 HAVANA transcript 36558205 36558527 . - . gene_id "ENSG00000128284.15"; transcript_id "ENST00000531195.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "APOL3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "APOL3-018"; level 2; tag "mRNA_start_NF"; tag "cds_start_NF"; havana_gene "OTTHUMG00000150632.19"; havana_transcript "OTTHUMT00000384100.1"; +chr22 HAVANA transcript 36556804 36556999 . - . gene_id "ENSG00000128284.15"; transcript_id "ENST00000487783.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "APOL3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "APOL3-008"; level 2; tag "mRNA_start_NF"; tag "cds_start_NF"; havana_gene "OTTHUMG00000150632.19"; havana_transcript "OTTHUMT00000319273.2"; +chr22 HAVANA transcript 36558205 36558527 . - . gene_id "ENSG00000128284.15"; transcript_id "ENST00000487783.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "APOL3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "APOL3-008"; level 2; tag "mRNA_start_NF"; tag "cds_start_NF"; havana_gene "OTTHUMG00000150632.19"; havana_transcript "OTTHUMT00000319273.2"; +chr22 HAVANA transcript 36556804 36556999 . - . gene_id "ENSG00000128284.15"; transcript_id "ENST00000530895.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "APOL3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "APOL3-015"; level 2; tag "mRNA_start_NF"; tag "cds_start_NF"; havana_gene "OTTHUMG00000150632.19"; havana_transcript "OTTHUMT00000384102.1"; +chr22 HAVANA transcript 36558205 36558527 . - . gene_id "ENSG00000128284.15"; transcript_id "ENST00000530895.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "APOL3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "APOL3-015"; level 2; tag "mRNA_start_NF"; tag "cds_start_NF"; havana_gene "OTTHUMG00000150632.19"; havana_transcript "OTTHUMT00000384102.1"; +chr22 HAVANA transcript 36556804 36556999 . - . gene_id "ENSG00000128284.15"; transcript_id "ENST00000472303.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "APOL3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "APOL3-010"; level 2; tag "mRNA_start_NF"; tag "cds_start_NF"; havana_gene "OTTHUMG00000150632.19"; havana_transcript "OTTHUMT00000319275.2"; +chr22 HAVANA transcript 36558205 36558527 . - . gene_id "ENSG00000128284.15"; transcript_id "ENST00000472303.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "APOL3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "APOL3-010"; level 2; tag "mRNA_start_NF"; tag "cds_start_NF"; havana_gene "OTTHUMG00000150632.19"; havana_transcript "OTTHUMT00000319275.2"; +chr22 HAVANA transcript 36556832 36556999 . - . gene_id "ENSG00000128284.15"; transcript_id "ENST00000531095.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "APOL3"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "APOL3-007"; level 1; tag "mRNA_start_NF"; tag "cds_start_NF"; tag "exp_conf"; havana_gene "OTTHUMG00000150632.19"; havana_transcript "OTTHUMT00000319272.2"; +chr22 HAVANA transcript 36558205 36558527 . - . gene_id "ENSG00000128284.15"; transcript_id "ENST00000531095.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "APOL3"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "APOL3-007"; level 1; tag "mRNA_start_NF"; tag "cds_start_NF"; tag "exp_conf"; havana_gene "OTTHUMG00000150632.19"; havana_transcript "OTTHUMT00000319272.2"; +chr22 HAVANA transcript 36556804 36556999 . - . gene_id "ENSG00000128284.15"; transcript_id "ENST00000533061.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "APOL3"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "APOL3-013"; level 2; havana_gene "OTTHUMG00000150632.19"; havana_transcript "OTTHUMT00000384104.1"; +chr22 HAVANA transcript 36558205 36558527 . - . gene_id "ENSG00000128284.15"; transcript_id "ENST00000533061.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "APOL3"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "APOL3-013"; level 2; havana_gene "OTTHUMG00000150632.19"; havana_transcript "OTTHUMT00000384104.1"; +chr22 HAVANA transcript 36635690 36635842 . - . gene_id "ENSG00000128335.9"; transcript_id "ENST00000358502.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "APOL2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "APOL2-002"; level 2; tag "basic"; tag "appris_candidate"; tag "CCDS"; ccdsid "CCDS43014.1"; havana_gene "OTTHUMG00000150634.2"; havana_transcript "OTTHUMT00000319280.1"; +chr22 HAVANA transcript 36635574 36635842 . - . gene_id "ENSG00000128335.9"; transcript_id "ENST00000451256.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "APOL2"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "APOL2-008"; level 2; tag "basic"; tag "appris_candidate_longest"; havana_gene "OTTHUMG00000150634.2"; havana_transcript "OTTHUMT00000394590.1"; +chr22 HAVANA transcript 36635507 36635842 . - . gene_id "ENSG00000128335.9"; transcript_id "ENST00000529194.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "APOL2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "APOL2-009"; level 2; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000150634.2"; havana_transcript "OTTHUMT00000394591.1"; +chr22 HAVANA transcript 36635608 36635842 . - . gene_id "ENSG00000128335.9"; transcript_id "ENST00000454728.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "APOL2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "APOL2-006"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000150634.2"; havana_transcript "OTTHUMT00000319284.1"; +chr22 HAVANA transcript 36635507 36635842 . - . gene_id "ENSG00000128335.9"; transcript_id "ENST00000476579.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "APOL2"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "APOL2-007"; level 2; tag "basic"; havana_gene "OTTHUMG00000150634.2"; havana_transcript "OTTHUMT00000319285.1"; +chr22 HAVANA transcript 36635629 36635842 . - . gene_id "ENSG00000128335.9"; transcript_id "ENST00000489186.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "APOL2"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "APOL2-004"; level 2; havana_gene "OTTHUMG00000150634.2"; havana_transcript "OTTHUMT00000319282.1"; +chr22 HAVANA transcript 36635720 36635842 . - . gene_id "ENSG00000128335.9"; transcript_id "ENST00000473549.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "APOL2"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "APOL2-003"; level 2; havana_gene "OTTHUMG00000150634.2"; havana_transcript "OTTHUMT00000319281.1"; +chr22 HAVANA transcript 36635617 36635842 . - . gene_id "ENSG00000128335.9"; transcript_id "ENST00000484830.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "APOL2"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "APOL2-005"; level 2; havana_gene "OTTHUMG00000150634.2"; havana_transcript "OTTHUMT00000319283.1"; +chr22 HAVANA transcript 36784064 36784130 . - . gene_id "ENSG00000100345.16"; transcript_id "ENST00000216181.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MYH9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "MYH9-001"; level 1; tag "basic"; tag "appris_principal"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS13927.1"; havana_gene "OTTHUMG00000030429.5"; havana_transcript "OTTHUMT00000259110.3"; +chr22 HAVANA transcript 36724998 36725007 . - . gene_id "ENSG00000100345.16"; transcript_id "ENST00000463027.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MYH9"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "MYH9-003"; level 2; tag "mRNA_end_NF"; havana_gene "OTTHUMG00000030429.5"; havana_transcript "OTTHUMT00000259111.2"; +chr22 HAVANA transcript 36761158 36761337 . - . gene_id "ENSG00000100345.16"; transcript_id "ENST00000401701.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MYH9"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "MYH9-002"; level 1; tag "basic"; tag "exp_conf"; havana_gene "OTTHUMG00000030429.5"; havana_transcript "OTTHUMT00000075317.4"; +chr22 HAVANA transcript 36761157 36761337 . - . gene_id "ENSG00000100345.16"; transcript_id "ENST00000456729.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MYH9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "MYH9-015"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000030429.5"; havana_transcript "OTTHUMT00000319104.1"; +chr22 HAVANA transcript 36782671 36782940 . + . gene_id "ENSG00000223695.1"; transcript_id "ENST00000424761.1"; gene_type "lincRNA"; gene_status "NOVEL"; gene_name "RP4-633O19__A.1"; transcript_type "lincRNA"; transcript_status "KNOWN"; transcript_name "RP4-633O19__A.1-001"; level 1; tag "basic"; tag "exp_conf"; havana_gene "OTTHUMG00000150616.1"; havana_transcript "OTTHUMT00000319084.1"; +chr22 HAVANA transcript 36783813 36784130 . + . gene_id "ENSG00000223695.1"; transcript_id "ENST00000424761.1"; gene_type "lincRNA"; gene_status "NOVEL"; gene_name "RP4-633O19__A.1"; transcript_type "lincRNA"; transcript_status "KNOWN"; transcript_name "RP4-633O19__A.1-001"; level 1; tag "basic"; tag "exp_conf"; havana_gene "OTTHUMG00000150616.1"; havana_transcript "OTTHUMT00000319084.1"; +chr22 HAVANA transcript 36877682 36877717 . - . gene_id "ENSG00000100348.5"; transcript_id "ENST00000416967.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TXN2"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TXN2-002"; level 2; tag "basic"; havana_gene "OTTHUMG00000150596.3"; havana_transcript "OTTHUMT00000319017.3"; +chr22 HAVANA transcript 36877680 36877717 . - . gene_id "ENSG00000100348.5"; transcript_id "ENST00000487725.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TXN2"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "TXN2-004"; level 2; tag "basic"; havana_gene "OTTHUMG00000150596.3"; havana_transcript "OTTHUMT00000319019.2"; +chr22 HAVANA transcript 36877388 36877717 . - . gene_id "ENSG00000100348.5"; transcript_id "ENST00000403313.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TXN2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TXN2-005"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13928.1"; havana_gene "OTTHUMG00000150596.3"; havana_transcript "OTTHUMT00000319020.1"; +chr22 HAVANA transcript 36877644 36877717 . - . gene_id "ENSG00000100348.5"; transcript_id "ENST00000411915.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TXN2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "TXN2-003"; level 2; havana_gene "OTTHUMG00000150596.3"; havana_transcript "OTTHUMT00000319018.1"; +chr22 HAVANA transcript 36925484 36925720 . - . gene_id "ENSG00000100353.13"; transcript_id "ENST00000216190.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EIF3D"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EIF3D-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13930.1"; havana_gene "OTTHUMG00000150599.2"; havana_transcript "OTTHUMT00000319026.1"; +chr22 ENSEMBL transcript 36925214 36925349 . - . gene_id "ENSG00000100353.13"; transcript_id "ENST00000541106.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EIF3D"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EIF3D-201"; level 3; tag "basic"; havana_gene "OTTHUMG00000150599.2"; +chr22 ENSEMBL transcript 36925430 36925720 . - . gene_id "ENSG00000100353.13"; transcript_id "ENST00000541106.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EIF3D"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EIF3D-201"; level 3; tag "basic"; havana_gene "OTTHUMG00000150599.2"; +chr22 HAVANA transcript 36924954 36925349 . - . gene_id "ENSG00000100353.13"; transcript_id "ENST00000405442.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EIF3D"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EIF3D-002"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13930.1"; havana_gene "OTTHUMG00000150599.2"; havana_transcript "OTTHUMT00000319027.1"; +chr22 HAVANA transcript 36925430 36925720 . - . gene_id "ENSG00000100353.13"; transcript_id "ENST00000405442.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EIF3D"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EIF3D-002"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13930.1"; havana_gene "OTTHUMG00000150599.2"; havana_transcript "OTTHUMT00000319027.1"; +chr22 HAVANA transcript 36925214 36925349 . - . gene_id "ENSG00000100353.13"; transcript_id "ENST00000455547.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EIF3D"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EIF3D-005"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000150599.2"; havana_transcript "OTTHUMT00000319030.1"; +chr22 HAVANA transcript 36925430 36925720 . - . gene_id "ENSG00000100353.13"; transcript_id "ENST00000455547.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EIF3D"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EIF3D-005"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000150599.2"; havana_transcript "OTTHUMT00000319030.1"; +chr22 HAVANA transcript 36925125 36925349 . - . gene_id "ENSG00000100353.13"; transcript_id "ENST00000457241.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EIF3D"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EIF3D-006"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000150599.2"; havana_transcript "OTTHUMT00000319031.1"; +chr22 HAVANA transcript 36925430 36925720 . - . gene_id "ENSG00000100353.13"; transcript_id "ENST00000457241.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EIF3D"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EIF3D-006"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000150599.2"; havana_transcript "OTTHUMT00000319031.1"; +chr22 HAVANA transcript 36925232 36925349 . - . gene_id "ENSG00000100353.13"; transcript_id "ENST00000432675.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EIF3D"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EIF3D-003"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000150599.2"; havana_transcript "OTTHUMT00000319028.1"; +chr22 HAVANA transcript 36925430 36925720 . - . gene_id "ENSG00000100353.13"; transcript_id "ENST00000432675.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EIF3D"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EIF3D-003"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000150599.2"; havana_transcript "OTTHUMT00000319028.1"; +chr22 HAVANA transcript 36924990 36925349 . - . gene_id "ENSG00000100353.13"; transcript_id "ENST00000402116.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EIF3D"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EIF3D-007"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000150599.2"; havana_transcript "OTTHUMT00000319032.1"; +chr22 HAVANA transcript 36925430 36925720 . - . gene_id "ENSG00000100353.13"; transcript_id "ENST00000402116.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EIF3D"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EIF3D-007"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000150599.2"; havana_transcript "OTTHUMT00000319032.1"; +chr22 HAVANA transcript 36925221 36925349 . - . gene_id "ENSG00000100353.13"; transcript_id "ENST00000496875.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EIF3D"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EIF3D-004"; level 2; havana_gene "OTTHUMG00000150599.2"; havana_transcript "OTTHUMT00000319029.1"; +chr22 HAVANA transcript 36925430 36925720 . - . gene_id "ENSG00000100353.13"; transcript_id "ENST00000496875.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EIF3D"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EIF3D-004"; level 2; havana_gene "OTTHUMG00000150599.2"; havana_transcript "OTTHUMT00000319029.1"; +chr22 HAVANA transcript 37256938 37257029 . + . gene_id "ENSG00000100365.10"; transcript_id "ENST00000447071.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NCF4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NCF4-004"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000150548.1"; havana_transcript "OTTHUMT00000318866.1"; +chr22 HAVANA transcript 37256938 37257029 . + . gene_id "ENSG00000100365.10"; transcript_id "ENST00000248899.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NCF4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NCF4-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13934.1"; havana_gene "OTTHUMG00000150548.1"; havana_transcript "OTTHUMT00000318863.1"; +chr22 HAVANA transcript 37256938 37257029 . + . gene_id "ENSG00000100365.10"; transcript_id "ENST00000397147.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NCF4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NCF4-002"; level 2; tag "basic"; tag "CCDS"; ccdsid "CCDS13935.1"; havana_gene "OTTHUMG00000150548.1"; havana_transcript "OTTHUMT00000318864.1"; +chr22 HAVANA transcript 37307670 37307703 . + . gene_id "ENSG00000100368.9"; transcript_id "ENST00000403662.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CSF2RB"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CSF2RB-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13936.1"; havana_gene "OTTHUMG00000150546.1"; havana_transcript "OTTHUMT00000318854.1"; +chr22 ENSEMBL transcript 37307675 37307703 . + . gene_id "ENSG00000100368.9"; transcript_id "ENST00000262825.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CSF2RB"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CSF2RB-201"; level 3; tag "basic"; havana_gene "OTTHUMG00000150546.1"; +chr22 HAVANA transcript 37317464 37317805 . + . gene_id "ENSG00000100368.9"; transcript_id "ENST00000406230.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CSF2RB"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "CSF2RB-002"; level 2; tag "basic"; havana_gene "OTTHUMG00000150546.1"; havana_transcript "OTTHUMT00000318855.1"; +chr22 HAVANA transcript 37317464 37317805 . + 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"CCDS"; ccdsid "CCDS13938.1"; havana_gene "OTTHUMG00000150533.2"; havana_transcript "OTTHUMT00000318790.1"; +chr22 HAVANA transcript 37415569 37415589 . - . gene_id "ENSG00000128311.9"; transcript_id "ENST00000249042.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TST"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TST-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13938.1"; havana_gene "OTTHUMG00000150533.2"; havana_transcript "OTTHUMT00000318789.1"; +chr22 HAVANA transcript 37415313 37415589 . + . gene_id "ENSG00000128309.12"; transcript_id "ENST00000401419.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MPST"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "MPST-002"; level 2; tag "alternative_5_UTR"; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13939.1"; havana_gene "OTTHUMG00000150543.1"; havana_transcript "OTTHUMT00000318828.1"; +chr22 ENSEMBL transcript 37415313 37415589 . + . gene_id "ENSG00000128309.12"; transcript_id "ENST00000397129.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MPST"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "MPST-201"; level 3; tag "basic"; tag "CCDS"; ccdsid "CCDS46703.1"; havana_gene "OTTHUMG00000150543.1"; +chr22 HAVANA transcript 37415313 37415589 . + . gene_id "ENSG00000128309.12"; transcript_id "ENST00000404802.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MPST"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "MPST-004"; level 2; tag "alternative_5_UTR"; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13939.1"; havana_gene "OTTHUMG00000150543.1"; havana_transcript "OTTHUMT00000318830.1"; +chr22 HAVANA transcript 37415313 37415589 . + . gene_id "ENSG00000128309.12"; transcript_id "ENST00000341116.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MPST"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "MPST-003"; level 2; tag "alternative_5_UTR"; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13939.1"; havana_gene "OTTHUMG00000150543.1"; havana_transcript "OTTHUMT00000318829.1"; +chr22 HAVANA transcript 37415313 37415589 . + . gene_id "ENSG00000128309.12"; transcript_id "ENST00000429360.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MPST"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "MPST-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13939.1"; havana_gene "OTTHUMG00000150543.1"; havana_transcript "OTTHUMT00000318827.1"; +chr22 HAVANA transcript 37415313 37415589 . + . gene_id "ENSG00000128309.12"; transcript_id "ENST00000404393.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MPST"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "MPST-005"; level 1; tag "basic"; tag "exp_conf"; havana_gene "OTTHUMG00000150543.1"; havana_transcript "OTTHUMT00000318831.1"; +chr22 HAVANA transcript 37415313 37415589 . + . gene_id "ENSG00000128309.12"; transcript_id "ENST00000485587.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MPST"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "MPST-007"; level 2; havana_gene "OTTHUMG00000150543.1"; havana_transcript "OTTHUMT00000318833.1"; +chr22 HAVANA transcript 37546031 37546295 . - . gene_id "ENSG00000100385.9"; transcript_id "ENST00000216223.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "IL2RB"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "IL2RB-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13942.1"; havana_gene "OTTHUMG00000150534.2"; havana_transcript "OTTHUMT00000318792.1"; +chr22 HAVANA transcript 37562641 37562796 . + . gene_id "ENSG00000235237.1"; transcript_id "ENST00000419128.1"; gene_type "antisense"; gene_status "NOVEL"; gene_name "RP1-151B14.6"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "RP1-151B14.6-001"; level 2; tag "basic"; havana_gene "OTTHUMG00000150530.1"; havana_transcript "OTTHUMT00000318775.1"; +chr22 HAVANA transcript 37640311 37640448 . - . gene_id "ENSG00000128340.10"; transcript_id "ENST00000249071.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RAC2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RAC2-001"; level 2; tag "basic"; tag "appris_candidate_longest"; tag "CCDS"; ccdsid "CCDS13945.1"; havana_gene "OTTHUMG00000150540.1"; havana_transcript "OTTHUMT00000318812.1"; +chr22 HAVANA transcript 37640319 37640448 . - . gene_id "ENSG00000128340.10"; transcript_id "ENST00000469532.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RAC2"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "RAC2-006"; level 2; havana_gene "OTTHUMG00000150540.1"; havana_transcript "OTTHUMT00000318817.1"; +chr22 HAVANA transcript 37640289 37640448 . - . gene_id "ENSG00000128340.10"; transcript_id "ENST00000401529.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RAC2"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "RAC2-002"; level 2; tag "basic"; havana_gene "OTTHUMG00000150540.1"; havana_transcript "OTTHUMT00000318813.1"; +chr22 HAVANA transcript 37880668 37880876 . - . gene_id "ENSG00000100060.13"; transcript_id "ENST00000442496.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MFNG"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "MFNG-004"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000150560.2"; havana_transcript "OTTHUMT00000318905.1"; +chr22 HAVANA transcript 37881137 37881413 . - . gene_id "ENSG00000100060.13"; transcript_id "ENST00000442496.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MFNG"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "MFNG-004"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000150560.2"; havana_transcript "OTTHUMT00000318905.1"; +chr22 ENSEMBL transcript 38004339 38004480 . + . gene_id "ENSG00000100083.14"; transcript_id "ENST00000414350.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GGA1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GGA1-202"; level 3; tag "basic"; tag "CCDS"; ccdsid "CCDS46704.1"; havana_gene "OTTHUMG00000030985.25"; +chr22 HAVANA transcript 38004339 38004481 . + . gene_id "ENSG00000100083.14"; transcript_id "ENST00000343632.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GGA1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GGA1-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13951.1"; havana_gene "OTTHUMG00000030985.25"; havana_transcript "OTTHUMT00000075873.3"; +chr22 HAVANA transcript 38004339 38004731 . + . gene_id "ENSG00000100083.14"; transcript_id "ENST00000381756.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GGA1"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "GGA1-002"; level 2; tag "non_canonical_TEC"; tag "basic"; havana_gene "OTTHUMG00000030985.25"; havana_transcript "OTTHUMT00000104183.2"; +chr22 HAVANA transcript 38004339 38004733 . + . gene_id "ENSG00000100083.14"; transcript_id "ENST00000489772.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GGA1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "GGA1-005"; level 2; havana_gene "OTTHUMG00000030985.25"; havana_transcript "OTTHUMT00000319457.1"; +chr22 HAVANA transcript 38004339 38004733 . + . gene_id "ENSG00000100083.14"; transcript_id "ENST00000405147.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GGA1"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "GGA1-007"; level 2; tag "basic"; havana_gene "OTTHUMG00000030985.25"; havana_transcript "OTTHUMT00000319459.1"; +chr22 HAVANA transcript 38004339 38004733 . + . gene_id "ENSG00000100083.14"; transcript_id "ENST00000429218.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GGA1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GGA1-010"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000030985.25"; havana_transcript "OTTHUMT00000319462.2"; +chr22 HAVANA transcript 38004339 38004733 . + . gene_id "ENSG00000100083.14"; transcript_id "ENST00000325180.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GGA1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GGA1-024"; level 2; tag "basic"; tag "CCDS"; ccdsid "CCDS33643.1"; havana_gene "OTTHUMG00000030985.25"; havana_transcript "OTTHUMT00000353186.1"; +chr22 ENSEMBL transcript 38004339 38004733 . + . gene_id "ENSG00000100083.14"; transcript_id "ENST00000337437.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GGA1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GGA1-201"; level 3; tag "basic"; havana_gene "OTTHUMG00000030985.25"; +chr22 HAVANA transcript 38004339 38004733 . + . gene_id "ENSG00000100083.14"; transcript_id "ENST00000439161.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GGA1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GGA1-009"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000030985.25"; havana_transcript "OTTHUMT00000319461.1"; +chr22 HAVANA transcript 38004940 38004941 . + . gene_id "ENSG00000100083.14"; transcript_id "ENST00000439161.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GGA1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GGA1-009"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000030985.25"; havana_transcript "OTTHUMT00000319461.1"; +chr22 HAVANA transcript 38004339 38004733 . + . gene_id "ENSG00000100083.14"; transcript_id "ENST00000449944.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GGA1"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "GGA1-016"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000030985.25"; havana_transcript "OTTHUMT00000319468.1"; +chr22 HAVANA transcript 38004940 38004954 . + . gene_id "ENSG00000100083.14"; transcript_id "ENST00000449944.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GGA1"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "GGA1-016"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000030985.25"; havana_transcript "OTTHUMT00000319468.1"; +chr22 HAVANA transcript 38004339 38004733 . + . gene_id "ENSG00000100083.14"; transcript_id "ENST00000411501.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GGA1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GGA1-008"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000030985.25"; havana_transcript "OTTHUMT00000319460.1"; +chr22 HAVANA transcript 38004940 38004966 . + . gene_id "ENSG00000100083.14"; transcript_id "ENST00000411501.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GGA1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GGA1-008"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000030985.25"; havana_transcript "OTTHUMT00000319460.1"; +chr22 HAVANA transcript 38004339 38004733 . + . gene_id "ENSG00000100083.14"; transcript_id "ENST00000453208.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GGA1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GGA1-012"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000030985.25"; havana_transcript "OTTHUMT00000319464.1"; +chr22 HAVANA transcript 38004940 38004983 . + . gene_id "ENSG00000100083.14"; transcript_id "ENST00000453208.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GGA1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GGA1-012"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000030985.25"; havana_transcript "OTTHUMT00000319464.1"; +chr22 HAVANA transcript 38004339 38004733 . + . gene_id "ENSG00000100083.14"; transcript_id "ENST00000447515.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GGA1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GGA1-017"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000030985.25"; havana_transcript "OTTHUMT00000319469.21"; +chr22 HAVANA transcript 38004940 38005046 . + . gene_id "ENSG00000100083.14"; transcript_id "ENST00000447515.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GGA1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GGA1-017"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000030985.25"; havana_transcript "OTTHUMT00000319469.21"; +chr22 HAVANA transcript 38004339 38004733 . + . gene_id "ENSG00000100083.14"; transcript_id "ENST00000406772.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GGA1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GGA1-003"; level 2; tag "basic"; tag "CCDS"; ccdsid "CCDS54526.1"; havana_gene "OTTHUMG00000030985.25"; havana_transcript "OTTHUMT00000319455.1"; +chr22 HAVANA transcript 38004940 38005046 . + . gene_id "ENSG00000100083.14"; transcript_id "ENST00000406772.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GGA1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GGA1-003"; level 2; tag "basic"; tag "CCDS"; ccdsid "CCDS54526.1"; havana_gene "OTTHUMG00000030985.25"; havana_transcript "OTTHUMT00000319455.1"; +chr22 HAVANA transcript 38004339 38004733 . + . gene_id "ENSG00000100083.14"; transcript_id "ENST00000431745.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GGA1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GGA1-011"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000030985.25"; havana_transcript "OTTHUMT00000319463.1"; +chr22 HAVANA transcript 38004940 38005066 . + . gene_id "ENSG00000100083.14"; transcript_id "ENST00000431745.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GGA1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GGA1-011"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000030985.25"; havana_transcript "OTTHUMT00000319463.1"; +chr22 HAVANA transcript 38004339 38004733 . + . gene_id "ENSG00000100083.14"; transcript_id "ENST00000484804.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GGA1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "GGA1-013"; level 2; havana_gene "OTTHUMG00000030985.25"; havana_transcript "OTTHUMT00000319465.1"; +chr22 HAVANA transcript 38004940 38005072 . + . gene_id "ENSG00000100083.14"; transcript_id "ENST00000484804.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GGA1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "GGA1-013"; level 2; havana_gene "OTTHUMG00000030985.25"; havana_transcript "OTTHUMT00000319465.1"; +chr22 HAVANA transcript 38004339 38004733 . + . gene_id "ENSG00000100083.14"; transcript_id "ENST00000488672.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GGA1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "GGA1-014"; level 2; tag "basic"; havana_gene "OTTHUMG00000030985.25"; havana_transcript "OTTHUMT00000319466.1"; +chr22 HAVANA transcript 38004940 38005250 . + . gene_id "ENSG00000100083.14"; transcript_id "ENST00000488672.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GGA1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "GGA1-014"; level 2; tag "basic"; havana_gene "OTTHUMG00000030985.25"; havana_transcript "OTTHUMT00000319466.1"; +chr22 HAVANA transcript 38005873 38006148 . + . gene_id "ENSG00000100083.14"; transcript_id "ENST00000488672.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GGA1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "GGA1-014"; level 2; tag "basic"; havana_gene "OTTHUMG00000030985.25"; havana_transcript "OTTHUMT00000319466.1"; +chr22 HAVANA transcript 38029112 38029485 . + . gene_id "ENSG00000100092.16"; transcript_id "ENST00000417536.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SH3BP1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "SH3BP1-002"; level 2; havana_gene "OTTHUMG00000030996.5"; havana_transcript "OTTHUMT00000319500.1"; +chr22 HAVANA transcript 38029655 38030455 . + . gene_id "ENSG00000100092.16"; transcript_id "ENST00000417536.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SH3BP1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "SH3BP1-002"; level 2; havana_gene "OTTHUMG00000030996.5"; havana_transcript "OTTHUMT00000319500.1"; +chr22 HAVANA transcript 38071552 38071614 . + . gene_id "ENSG00000100097.7"; transcript_id "ENST00000215909.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "LGALS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "LGALS1-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13954.1"; havana_gene "OTTHUMG00000150661.1"; havana_transcript "OTTHUMT00000319482.1"; +chr22 HAVANA transcript 38071552 38071658 . + . gene_id "ENSG00000100097.7"; transcript_id "ENST00000464120.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "LGALS1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "LGALS1-007"; level 2; havana_gene "OTTHUMG00000150661.1"; havana_transcript "OTTHUMT00000319488.1"; +chr22 HAVANA transcript 38071552 38071663 . + . gene_id "ENSG00000100097.7"; transcript_id "ENST00000425542.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "LGALS1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "LGALS1-004"; level 2; havana_gene "OTTHUMG00000150661.1"; havana_transcript "OTTHUMT00000319485.1"; +chr22 HAVANA transcript 38071552 38071688 . + . gene_id "ENSG00000100097.7"; transcript_id "ENST00000480207.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "LGALS1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "LGALS1-002"; level 2; havana_gene "OTTHUMG00000150661.1"; havana_transcript "OTTHUMT00000319483.1"; +chr22 HAVANA transcript 38071552 38071694 . + . gene_id "ENSG00000100097.7"; transcript_id "ENST00000454173.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "LGALS1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "LGALS1-005"; level 2; havana_gene "OTTHUMG00000150661.1"; havana_transcript "OTTHUMT00000319486.1"; +chr22 HAVANA transcript 38071552 38071828 . + . gene_id "ENSG00000100097.7"; transcript_id "ENST00000489315.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "LGALS1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "LGALS1-003"; level 2; tag "basic"; havana_gene "OTTHUMG00000150661.1"; havana_transcript "OTTHUMT00000319484.1"; +chr22 HAVANA transcript 38071552 38071828 . + . gene_id "ENSG00000100097.7"; transcript_id "ENST00000472321.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "LGALS1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "LGALS1-006"; level 2; havana_gene "OTTHUMG00000150661.1"; havana_transcript "OTTHUMT00000319487.1"; +chr22 HAVANA transcript 38072623 38072964 . + . gene_id "ENSG00000100097.7"; transcript_id "ENST00000472321.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "LGALS1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "LGALS1-006"; level 2; havana_gene "OTTHUMG00000150661.1"; havana_transcript "OTTHUMT00000319487.1"; +chr22 HAVANA transcript 38082166 38082329 . + . gene_id "ENSG00000100101.13"; transcript_id "ENST00000359114.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NOL12"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NOL12-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13955.1"; havana_gene "OTTHUMG00000150660.4"; havana_transcript "OTTHUMT00000319476.1"; +chr22 HAVANA transcript 38082166 38082329 . + . gene_id "ENSG00000100101.13"; transcript_id "ENST00000438329.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NOL12"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "NOL12-002"; level 2; tag "CCDS"; ccdsid "CCDS13955.1"; havana_gene "OTTHUMG00000150660.4"; havana_transcript "OTTHUMT00000319477.1"; +chr22 HAVANA transcript 38082166 38082349 . + . gene_id "ENSG00000100101.13"; transcript_id "ENST00000474032.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NOL12"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "NOL12-004"; level 2; havana_gene "OTTHUMG00000150660.4"; havana_transcript "OTTHUMT00000319479.1"; +chr22 HAVANA transcript 38082166 38082352 . + . gene_id "ENSG00000100101.13"; transcript_id "ENST00000468597.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NOL12"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "NOL12-006"; level 2; havana_gene "OTTHUMG00000150660.4"; havana_transcript "OTTHUMT00000319481.1"; +chr22 HAVANA transcript 38082166 38082420 . + . gene_id "ENSG00000100101.13"; transcript_id "ENST00000455236.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NOL12"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "NOL12-007"; level 2; tag "non_canonical_TEC"; tag "mRNA_start_NF"; tag "cds_start_NF"; tag "readthrough_transcript"; havana_gene "OTTHUMG00000150660.4"; havana_transcript "OTTHUMT00000471932.2"; +chr22 HAVANA transcript 38082166 38082493 . + . gene_id "ENSG00000100101.13"; transcript_id "ENST00000484650.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NOL12"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "NOL12-005"; level 2; havana_gene "OTTHUMG00000150660.4"; havana_transcript "OTTHUMT00000319480.1"; +chr22 HAVANA transcript 38240439 38240655 . - . gene_id "ENSG00000100124.8"; transcript_id "ENST00000215941.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ANKRD54"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ANKRD54-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13959.1"; havana_gene "OTTHUMG00000150663.4"; havana_transcript "OTTHUMT00000319490.1"; +chr22 HAVANA transcript 38240379 38240655 . - . gene_id "ENSG00000100124.8"; transcript_id "ENST00000406423.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ANKRD54"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "ANKRD54-010"; level 2; tag "basic"; havana_gene "OTTHUMG00000150663.4"; havana_transcript "OTTHUMT00000319499.1"; +chr22 HAVANA transcript 38245335 38245456 . - . gene_id "ENSG00000100124.8"; transcript_id "ENST00000609454.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ANKRD54"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "ANKRD54-013"; level 2; tag "basic"; havana_gene "OTTHUMG00000150663.4"; havana_transcript "OTTHUMT00000472272.1"; +chr22 HAVANA transcript 38240379 38240655 . - . gene_id "ENSG00000100124.8"; transcript_id "ENST00000411961.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ANKRD54"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "ANKRD54-004"; level 2; tag "basic"; havana_gene "OTTHUMG00000150663.4"; havana_transcript "OTTHUMT00000319493.1"; +chr22 HAVANA transcript 38240379 38240655 . - . gene_id "ENSG00000100124.8"; transcript_id "ENST00000458278.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ANKRD54"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ANKRD54-006"; level 2; tag "mRNA_start_NF"; tag "mRNA_end_NF"; tag "cds_start_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000150663.4"; havana_transcript "OTTHUMT00000319495.2"; +chr22 HAVANA transcript 38240379 38240655 . - . gene_id "ENSG00000100124.8"; transcript_id "ENST00000407117.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ANKRD54"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ANKRD54-007"; level 2; tag "mRNA_start_NF"; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000150663.4"; havana_transcript "OTTHUMT00000319496.1"; +chr22 HAVANA transcript 38240379 38240655 . - . gene_id "ENSG00000100124.8"; transcript_id "ENST00000413497.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ANKRD54"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ANKRD54-008"; level 2; tag "mRNA_start_NF"; tag "cds_start_NF"; havana_gene "OTTHUMG00000150663.4"; havana_transcript "OTTHUMT00000319497.1"; +chr22 HAVANA transcript 38240379 38240655 . - . gene_id "ENSG00000100124.8"; transcript_id "ENST00000424350.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ANKRD54"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "ANKRD54-003"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000150663.4"; havana_transcript "OTTHUMT00000319492.1"; +chr22 HAVANA transcript 38240379 38240655 . - . gene_id "ENSG00000100124.8"; transcript_id "ENST00000434930.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ANKRD54"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "ANKRD54-005"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000150663.4"; havana_transcript "OTTHUMT00000319494.1"; +chr22 HAVANA transcript 38245326 38245456 . - . gene_id "ENSG00000100124.8"; transcript_id "ENST00000609706.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ANKRD54"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ANKRD54-014"; level 2; havana_gene "OTTHUMG00000150663.4"; havana_transcript "OTTHUMT00000472269.1"; +chr22 ENSEMBL transcript 38240379 38240655 . - . gene_id "ENSG00000207945.1"; transcript_id "ENST00000385210.1"; gene_type "miRNA"; gene_status "KNOWN"; gene_name "MIR658"; transcript_type "miRNA"; transcript_status "KNOWN"; transcript_name "MIR658-201"; level 3; tag "basic"; +chr22 ENSEMBL transcript 38245156 38245456 . - . gene_id "ENSG00000207696.1"; transcript_id "ENST00000384963.1"; gene_type "miRNA"; gene_status "KNOWN"; gene_name "MIR659"; transcript_type "miRNA"; transcript_status "KNOWN"; transcript_name "MIR659-201"; level 3; tag "basic"; +chr22 HAVANA transcript 38245156 38245417 . + . gene_id "ENSG00000100129.13"; transcript_id "ENST00000439997.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EIF3L"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "EIF3L-005"; level 2; tag "mRNA_start_NF"; tag "cds_start_NF"; havana_gene "OTTHUMG00000150671.4"; havana_transcript "OTTHUMT00000319555.1"; +chr22 HAVANA transcript 38245156 38245423 . + . gene_id "ENSG00000100129.13"; transcript_id "ENST00000476955.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EIF3L"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "EIF3L-010"; level 2; tag "mRNA_end_NF"; tag "basic"; havana_gene "OTTHUMG00000150671.4"; havana_transcript "OTTHUMT00000319560.1"; +chr22 HAVANA transcript 38245156 38245423 . + . gene_id "ENSG00000100129.13"; transcript_id "ENST00000381683.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EIF3L"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EIF3L-013"; level 2; tag "basic"; tag "CCDS"; ccdsid "CCDS56230.1"; havana_gene "OTTHUMG00000150671.4"; havana_transcript "OTTHUMT00000470747.1"; +chr22 HAVANA transcript 38245156 38245426 . + . gene_id "ENSG00000100129.13"; transcript_id "ENST00000414316.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EIF3L"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "EIF3L-007"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000150671.4"; havana_transcript "OTTHUMT00000319557.2"; +chr22 HAVANA transcript 38245156 38245426 . + . gene_id "ENSG00000100129.13"; transcript_id "ENST00000436452.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EIF3L"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "EIF3L-008"; level 2; tag "mRNA_start_NF"; tag "cds_start_NF"; havana_gene "OTTHUMG00000150671.4"; havana_transcript "OTTHUMT00000319558.2"; +chr22 HAVANA transcript 38245156 38245427 . + . gene_id "ENSG00000100129.13"; transcript_id "ENST00000477256.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EIF3L"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EIF3L-004"; level 2; havana_gene "OTTHUMG00000150671.4"; havana_transcript "OTTHUMT00000319554.1"; +chr22 HAVANA transcript 38245156 38245456 . + . gene_id "ENSG00000100129.13"; transcript_id "ENST00000406934.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EIF3L"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "EIF3L-002"; level 2; tag "basic"; havana_gene "OTTHUMG00000150671.4"; havana_transcript "OTTHUMT00000319552.1"; +chr22 HAVANA transcript 38245156 38245456 . + . gene_id "ENSG00000100129.13"; transcript_id "ENST00000451427.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EIF3L"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EIF3L-006"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000150671.4"; havana_transcript "OTTHUMT00000319556.2"; +chr22 HAVANA transcript 38577810 38577821 . - . gene_id "ENSG00000184381.14"; transcript_id "ENST00000332509.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PLA2G6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PLA2G6-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13967.1"; havana_gene "OTTHUMG00000151246.3"; havana_transcript "OTTHUMT00000321860.1"; +chr22 HAVANA transcript 38577762 38577821 . - . gene_id "ENSG00000184381.14"; transcript_id "ENST00000335539.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PLA2G6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PLA2G6-201"; level 2; tag "basic"; tag "CCDS"; ccdsid "CCDS33645.1"; havana_gene "OTTHUMG00000151246.3"; havana_transcript "OTTHUMT00000321861.1"; +chr22 HAVANA transcript 38577788 38577821 . - . gene_id "ENSG00000184381.14"; transcript_id "ENST00000430886.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PLA2G6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PLA2G6-014"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000151246.3"; havana_transcript "OTTHUMT00000321873.1"; +chr22 HAVANA transcript 38577816 38577821 . - . gene_id "ENSG00000184381.14"; transcript_id "ENST00000447598.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PLA2G6"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "PLA2G6-010"; level 2; tag "basic"; havana_gene "OTTHUMG00000151246.3"; havana_transcript "OTTHUMT00000321869.2"; +chr22 HAVANA transcript 38576412 38576415 . - . gene_id "ENSG00000184381.14"; transcript_id "ENST00000455341.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PLA2G6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PLA2G6-007"; level 2; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000151246.3"; havana_transcript "OTTHUMT00000321866.2"; +chr22 HAVANA transcript 38576866 38577166 . - . gene_id "ENSG00000184381.14"; transcript_id "ENST00000455341.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PLA2G6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PLA2G6-007"; level 2; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000151246.3"; havana_transcript "OTTHUMT00000321866.2"; +chr22 HAVANA transcript 38577545 38577821 . - . gene_id "ENSG00000184381.14"; transcript_id "ENST00000455341.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PLA2G6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PLA2G6-007"; level 2; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000151246.3"; havana_transcript "OTTHUMT00000321866.2"; +chr22 HAVANA transcript 38577791 38577821 . - . gene_id "ENSG00000184381.14"; transcript_id "ENST00000426674.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PLA2G6"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "PLA2G6-006"; level 2; havana_gene "OTTHUMG00000151246.3"; havana_transcript "OTTHUMT00000321865.1"; +chr22 HAVANA transcript 38902658 38902972 . - . gene_id "ENSG00000100201.14"; transcript_id "ENST00000396821.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "DDX17"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "DDX17-001"; level 2; tag "basic"; tag "CCDS"; ccdsid "CCDS46706.1"; havana_gene "OTTHUMG00000151136.4"; havana_transcript "OTTHUMT00000321476.2"; +chr22 ENSEMBL transcript 38902658 38902972 . - . gene_id "ENSG00000100201.14"; transcript_id "ENST00000381633.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "DDX17"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "DDX17-201"; level 3; tag "basic"; tag "appris_principal"; havana_gene "OTTHUMG00000151136.4"; +chr22 HAVANA transcript 38902300 38902342 . - . gene_id "ENSG00000100201.14"; transcript_id "ENST00000216019.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "DDX17"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "DDX17-003"; level 2; havana_gene "OTTHUMG00000151136.4"; havana_transcript "OTTHUMT00000321478.2"; +chr22 HAVANA transcript 38902658 38902972 . - . gene_id "ENSG00000100201.14"; transcript_id "ENST00000216019.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "DDX17"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "DDX17-003"; level 2; havana_gene "OTTHUMG00000151136.4"; havana_transcript "OTTHUMT00000321478.2"; +chr22 HAVANA transcript 38902318 38902342 . - . gene_id "ENSG00000100201.14"; transcript_id "ENST00000403230.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "DDX17"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "DDX17-002"; level 2; tag "mRNA_start_NF"; tag "CCDS"; ccdsid "CCDS33646.1"; havana_gene "OTTHUMG00000151136.4"; havana_transcript "OTTHUMT00000321477.2"; +chr22 HAVANA transcript 38902658 38902972 . - . gene_id "ENSG00000100201.14"; transcript_id "ENST00000403230.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "DDX17"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "DDX17-002"; level 2; tag "mRNA_start_NF"; tag "CCDS"; ccdsid "CCDS33646.1"; havana_gene "OTTHUMG00000151136.4"; havana_transcript "OTTHUMT00000321477.2"; +chr22 HAVANA transcript 38902066 38902342 . - . gene_id "ENSG00000100201.14"; transcript_id "ENST00000467279.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "DDX17"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "DDX17-006"; level 2; havana_gene "OTTHUMG00000151136.4"; havana_transcript "OTTHUMT00000321481.1"; +chr22 HAVANA transcript 38902658 38902972 . - . gene_id "ENSG00000100201.14"; transcript_id "ENST00000467279.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "DDX17"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "DDX17-006"; level 2; havana_gene "OTTHUMG00000151136.4"; havana_transcript "OTTHUMT00000321481.1"; +chr22 HAVANA transcript 38902312 38902342 . - . gene_id "ENSG00000100201.14"; transcript_id "ENST00000479734.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "DDX17"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "DDX17-004"; level 2; havana_gene "OTTHUMG00000151136.4"; havana_transcript "OTTHUMT00000321479.1"; +chr22 HAVANA transcript 38902658 38902972 . - . gene_id "ENSG00000100201.14"; transcript_id "ENST00000479734.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "DDX17"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "DDX17-004"; level 2; havana_gene "OTTHUMG00000151136.4"; havana_transcript "OTTHUMT00000321479.1"; +chr22 ENSEMBL transcript 39052635 39052692 . - . gene_id "ENSG00000184949.11"; transcript_id "ENST00000535113.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FAM227A"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FAM227A-202"; level 3; tag "basic"; tag "appris_principal"; havana_gene "OTTHUMG00000151133.6"; +chr22 HAVANA transcript 39052416 39052692 . - . gene_id "ENSG00000184949.11"; transcript_id "ENST00000355830.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FAM227A"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "FAM227A-001"; level 1; tag "non_canonical_U12"; tag "basic"; tag "exp_conf"; havana_gene "OTTHUMG00000151133.6"; havana_transcript "OTTHUMT00000321457.4"; +chr22 ENSEMBL transcript 39052635 39052692 . - . gene_id "ENSG00000184949.11"; transcript_id "ENST00000406767.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FAM227A"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FAM227A-201"; level 3; tag "basic"; havana_gene "OTTHUMG00000151133.6"; +chr22 HAVANA transcript 39052635 39052692 . - . gene_id "ENSG00000184949.11"; transcript_id "ENST00000540952.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FAM227A"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "FAM227A-009"; level 2; tag "non_canonical_U12"; tag "basic"; havana_gene "OTTHUMG00000151133.6"; havana_transcript "OTTHUMT00000400925.1"; +chr22 HAVANA transcript 39052416 39052692 . - . gene_id "ENSG00000184949.11"; transcript_id "ENST00000544346.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FAM227A"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "FAM227A-006"; level 2; tag "non_canonical_U12"; havana_gene "OTTHUMG00000151133.6"; havana_transcript "OTTHUMT00000400926.1"; +chr22 HAVANA transcript 39052416 39052692 . - . gene_id "ENSG00000184949.11"; transcript_id "ENST00000424706.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FAM227A"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "FAM227A-003"; level 2; havana_gene "OTTHUMG00000151133.6"; havana_transcript "OTTHUMT00000322014.1"; +chr22 HAVANA transcript 39052416 39052692 . - . gene_id "ENSG00000184949.11"; transcript_id "ENST00000484582.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FAM227A"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "FAM227A-002"; level 2; havana_gene "OTTHUMG00000151133.6"; havana_transcript "OTTHUMT00000322013.1"; +chr22 HAVANA transcript 39052416 39052692 . - . gene_id "ENSG00000184949.11"; transcript_id "ENST00000490082.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FAM227A"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "FAM227A-004"; level 2; havana_gene "OTTHUMG00000151133.6"; havana_transcript "OTTHUMT00000322015.1"; +chr22 HAVANA transcript 39052416 39052640 . + . gene_id "ENSG00000100211.6"; transcript_id "ENST00000475924.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CBY1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "CBY1-004"; level 2; havana_gene "OTTHUMG00000150990.19"; havana_transcript "OTTHUMT00000321240.1"; +chr22 HAVANA transcript 39052416 39052640 . + . gene_id "ENSG00000100211.6"; transcript_id "ENST00000485501.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CBY1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "CBY1-009"; level 2; havana_gene "OTTHUMG00000150990.19"; havana_transcript "OTTHUMT00000320840.1"; +chr22 HAVANA transcript 39052416 39052644 . + . gene_id "ENSG00000100211.6"; transcript_id "ENST00000411557.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CBY1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CBY1-003"; level 2; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000150990.19"; havana_transcript "OTTHUMT00000320834.19"; +chr22 HAVANA transcript 39052416 39052655 . + . gene_id "ENSG00000100211.6"; transcript_id "ENST00000396811.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CBY1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CBY1-002"; level 2; tag "alternative_5_UTR"; tag "mRNA_start_NF"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13974.1"; havana_gene "OTTHUMG00000150990.19"; havana_transcript "OTTHUMT00000320833.1"; +chr22 HAVANA transcript 39052416 39052659 . + . gene_id "ENSG00000100211.6"; transcript_id "ENST00000216029.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CBY1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CBY1-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13974.1"; havana_gene "OTTHUMG00000150990.19"; havana_transcript "OTTHUMT00000320832.1"; +chr22 HAVANA transcript 39052416 39052675 . + . gene_id "ENSG00000100211.6"; transcript_id "ENST00000492537.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CBY1"; transcript_type 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"ENSG00000100211.6"; transcript_id "ENST00000489847.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CBY1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "CBY1-007"; level 2; havana_gene "OTTHUMG00000150990.19"; havana_transcript "OTTHUMT00000320838.1"; +chr22 HAVANA transcript 39077829 39078163 . - . gene_id "ENSG00000228274.3"; transcript_id "ENST00000431924.2"; gene_type "antisense"; gene_status "NOVEL"; gene_name "RP3-508I15.9"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "RP3-508I15.9-004"; level 1; tag "basic"; tag "exp_conf"; havana_gene "OTTHUMG00000150989.7"; havana_transcript "OTTHUMT00000321038.3"; +chr22 HAVANA transcript 39077829 39078163 . - . gene_id "ENSG00000228274.3"; transcript_id "ENST00000444381.1"; gene_type "antisense"; gene_status "NOVEL"; gene_name "RP3-508I15.9"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "RP3-508I15.9-001"; level 2; tag "basic"; havana_gene "OTTHUMG00000150989.7"; havana_transcript "OTTHUMT00000320831.1"; +chr22 HAVANA transcript 39077829 39078163 . - . gene_id "ENSG00000228274.3"; transcript_id "ENST00000412067.1"; gene_type "antisense"; gene_status "NOVEL"; gene_name "RP3-508I15.9"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "RP3-508I15.9-002"; level 2; tag "basic"; havana_gene "OTTHUMG00000150989.7"; havana_transcript "OTTHUMT00000321036.1"; +chr22 HAVANA transcript 39077829 39077952 . + . gene_id "ENSG00000100216.4"; transcript_id "ENST00000216034.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TOMM22"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TOMM22-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13975.1"; havana_gene "OTTHUMG00000150991.1"; havana_transcript "OTTHUMT00000320842.1"; +chr22 HAVANA transcript 39077829 39078163 . + . gene_id "ENSG00000100216.4"; transcript_id "ENST00000492561.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TOMM22"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "TOMM22-002"; level 2; havana_gene "OTTHUMG00000150991.1"; havana_transcript "OTTHUMT00000320843.1"; +chr22 HAVANA transcript 39096985 39097261 . - . gene_id "ENSG00000100221.6"; transcript_id "ENST00000216039.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "JOSD1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "JOSD1-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13976.1"; havana_gene "OTTHUMG00000151030.17"; havana_transcript "OTTHUMT00000321047.1"; +chr22 HAVANA transcript 39096985 39097261 . - . gene_id "ENSG00000100221.6"; transcript_id "ENST00000545590.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "JOSD1"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "JOSD1-012"; level 1; tag "mRNA_start_NF"; tag "cds_start_NF"; tag "exp_conf"; havana_gene "OTTHUMG00000151030.17"; havana_transcript "OTTHUMT00000400928.1"; +chr22 HAVANA transcript 39097036 39097261 . - . gene_id "ENSG00000100221.6"; transcript_id "ENST00000427389.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "JOSD1"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "JOSD1-011"; level 2; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000151030.17"; havana_transcript "OTTHUMT00000321056.1"; +chr22 HAVANA transcript 39096985 39097261 . - . gene_id "ENSG00000100221.6"; transcript_id "ENST00000412832.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "JOSD1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "JOSD1-010"; level 2; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000151030.17"; havana_transcript "OTTHUMT00000321055.16"; +chr22 HAVANA transcript 39096985 39097261 . - . gene_id "ENSG00000100221.6"; transcript_id "ENST00000456626.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "JOSD1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "JOSD1-003"; level 2; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000151030.17"; havana_transcript "OTTHUMT00000321049.1"; +chr22 HAVANA transcript 39097038 39097261 . - . gene_id "ENSG00000100221.6"; transcript_id "ENST00000462610.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "JOSD1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "JOSD1-004"; level 2; tag "basic"; havana_gene "OTTHUMG00000151030.17"; havana_transcript "OTTHUMT00000321050.1"; +chr22 HAVANA transcript 39096985 39097261 . - . gene_id "ENSG00000100221.6"; transcript_id "ENST00000493939.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "JOSD1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "JOSD1-006"; level 2; havana_gene "OTTHUMG00000151030.17"; havana_transcript "OTTHUMT00000321052.1"; +chr22 HAVANA transcript 39100931 39101263 . + . gene_id "ENSG00000100226.11"; transcript_id "ENST00000216044.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GTPBP1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GTPBP1-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13977.2"; havana_gene "OTTHUMG00000151002.3"; havana_transcript "OTTHUMT00000075532.1"; +chr22 HAVANA transcript 39100931 39101263 . + . gene_id "ENSG00000100226.11"; transcript_id "ENST00000484657.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GTPBP1"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "GTPBP1-003"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000151002.3"; havana_transcript "OTTHUMT00000320864.2"; +chr22 HAVANA transcript 39100931 39101263 . + . gene_id "ENSG00000100226.11"; transcript_id "ENST00000418601.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GTPBP1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GTPBP1-004"; level 2; havana_gene "OTTHUMG00000151002.3"; havana_transcript "OTTHUMT00000320865.1"; +chr22 HAVANA transcript 39101821 39101953 . + . gene_id "ENSG00000100226.11"; transcript_id "ENST00000418601.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GTPBP1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GTPBP1-004"; level 2; havana_gene "OTTHUMG00000151002.3"; havana_transcript "OTTHUMT00000320865.1"; +chr22 HAVANA transcript 39100931 39101263 . + . gene_id "ENSG00000100226.11"; transcript_id "ENST00000461428.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GTPBP1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "GTPBP1-015"; level 2; havana_gene "OTTHUMG00000151002.3"; havana_transcript "OTTHUMT00000321225.2"; +chr22 HAVANA transcript 39101821 39102122 . + . gene_id "ENSG00000100226.11"; transcript_id "ENST00000461428.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GTPBP1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "GTPBP1-015"; level 2; havana_gene "OTTHUMG00000151002.3"; havana_transcript "OTTHUMT00000321225.2"; +chr22 HAVANA transcript 39100931 39101263 . + . gene_id "ENSG00000100226.11"; transcript_id "ENST00000488787.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GTPBP1"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "GTPBP1-005"; level 2; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000151002.3"; havana_transcript "OTTHUMT00000320866.2"; +chr22 HAVANA transcript 39101821 39102164 . + . gene_id "ENSG00000100226.11"; transcript_id "ENST00000488787.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GTPBP1"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "GTPBP1-005"; level 2; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000151002.3"; havana_transcript "OTTHUMT00000320866.2"; +chr22 HAVANA transcript 39100931 39101263 . + . gene_id "ENSG00000100226.11"; transcript_id "ENST00000470836.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GTPBP1"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "GTPBP1-011"; level 1; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; tag "exp_conf"; havana_gene "OTTHUMG00000151002.3"; havana_transcript "OTTHUMT00000320912.2"; +chr22 HAVANA transcript 39101821 39102164 . + . gene_id "ENSG00000100226.11"; transcript_id "ENST00000470836.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GTPBP1"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "GTPBP1-011"; level 1; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; tag "exp_conf"; havana_gene "OTTHUMG00000151002.3"; havana_transcript "OTTHUMT00000320912.2"; +chr22 HAVANA transcript 39129291 39129567 . + . gene_id "ENSG00000100226.11"; transcript_id "ENST00000487538.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GTPBP1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GTPBP1-017"; level 2; tag "mRNA_start_NF"; tag "cds_start_NF"; havana_gene "OTTHUMG00000151002.3"; havana_transcript "OTTHUMT00000321227.2"; +chr22 HAVANA transcript 39129291 39129567 . + . gene_id "ENSG00000100226.11"; transcript_id "ENST00000489527.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GTPBP1"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "GTPBP1-018"; level 1; tag "mRNA_start_NF"; tag "cds_start_NF"; tag "exp_conf"; havana_gene "OTTHUMG00000151002.3"; havana_transcript "OTTHUMT00000321228.2"; +chr22 HAVANA transcript 39129291 39129567 . + . gene_id "ENSG00000244491.1"; transcript_id "ENST00000420118.1"; gene_type "antisense"; gene_status "NOVEL"; gene_name "RP3-508I15.18"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "RP3-508I15.18-001"; level 1; tag "basic"; tag "exp_conf"; havana_gene "OTTHUMG00000151086.1"; havana_transcript "OTTHUMT00000321239.1"; +chr22 HAVANA transcript 39151534 39151698 . - . gene_id "ENSG00000100242.11"; transcript_id "ENST00000405510.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SUN2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SUN2-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13978.1"; havana_gene "OTTHUMG00000151031.8"; havana_transcript "OTTHUMT00000321057.1"; +chr22 ENSEMBL transcript 39150957 39150960 . - . gene_id "ENSG00000100242.11"; transcript_id "ENST00000411587.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SUN2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SUN2-202"; level 3; tag "basic"; havana_gene "OTTHUMG00000151031.8"; +chr22 ENSEMBL transcript 39151398 39151698 . - . gene_id "ENSG00000100242.11"; transcript_id "ENST00000411587.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SUN2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SUN2-202"; level 3; tag "basic"; havana_gene "OTTHUMG00000151031.8"; +chr22 HAVANA transcript 39151398 39151698 . - . gene_id "ENSG00000100242.11"; transcript_id "ENST00000456894.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SUN2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SUN2-004"; level 2; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000151031.8"; havana_transcript "OTTHUMT00000321060.2"; +chr22 HAVANA transcript 39150957 39150960 . - . gene_id "ENSG00000100242.11"; transcript_id "ENST00000420859.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SUN2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SUN2-008"; level 2; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000151031.8"; havana_transcript "OTTHUMT00000321064.8"; +chr22 HAVANA transcript 39151398 39151698 . - . gene_id "ENSG00000100242.11"; transcript_id "ENST00000420859.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SUN2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SUN2-008"; level 2; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000151031.8"; havana_transcript "OTTHUMT00000321064.8"; +chr22 HAVANA transcript 39151398 39151698 . - . gene_id "ENSG00000100242.11"; transcript_id "ENST00000452294.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SUN2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SUN2-005"; level 2; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000151031.8"; havana_transcript "OTTHUMT00000321061.1"; +chr22 HAVANA transcript 39150949 39150960 . - . gene_id "ENSG00000100242.11"; transcript_id "ENST00000494273.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SUN2"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "SUN2-007"; level 2; havana_gene "OTTHUMG00000151031.8"; havana_transcript "OTTHUMT00000321063.1"; +chr22 HAVANA transcript 39151398 39151698 . - . gene_id "ENSG00000100242.11"; transcript_id "ENST00000494273.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SUN2"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "SUN2-007"; level 2; havana_gene "OTTHUMG00000151031.8"; havana_transcript "OTTHUMT00000321063.1"; +chr22 HAVANA transcript 39151640 39151698 . - . gene_id "ENSG00000100242.11"; transcript_id "ENST00000433561.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SUN2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SUN2-003"; level 2; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000151031.8"; havana_transcript "OTTHUMT00000321059.1"; +chr22 HAVANA transcript 39150781 39150960 . - . gene_id "ENSG00000100242.11"; transcript_id "ENST00000417332.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SUN2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SUN2-010"; level 2; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000151031.8"; havana_transcript "OTTHUMT00000321066.2"; +chr22 HAVANA transcript 39151398 39151698 . - . gene_id "ENSG00000100242.11"; transcript_id "ENST00000417332.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SUN2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SUN2-010"; level 2; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000151031.8"; havana_transcript "OTTHUMT00000321066.2"; +chr22 HAVANA transcript 39151435 39151698 . - . gene_id "ENSG00000100242.11"; transcript_id "ENST00000439339.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SUN2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SUN2-006"; level 2; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000151031.8"; havana_transcript "OTTHUMT00000321062.1"; +chr22 HAVANA transcript 39129291 39129567 . + . gene_id "ENSG00000230149.2"; transcript_id "ENST00000418803.1"; gene_type "antisense"; gene_status "NOVEL"; gene_name "RP3-508I15.19"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "RP3-508I15.19-001"; level 1; tag "basic"; tag "exp_conf"; havana_gene "OTTHUMG00000151089.1"; havana_transcript "OTTHUMT00000321250.1"; +chr22 HAVANA transcript 39268320 39268416 . - . gene_id "ENSG00000183741.7"; transcript_id "ENST00000407418.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CBX6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CBX6-001"; level 2; tag "basic"; tag "CCDS"; ccdsid "CCDS13980.1"; havana_gene "OTTHUMG00000150456.2"; havana_transcript "OTTHUMT00000318190.1"; +chr22 HAVANA transcript 39270019 39270319 . - . gene_id "ENSG00000183741.7"; transcript_id "ENST00000407418.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CBX6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CBX6-001"; level 2; tag "basic"; tag "CCDS"; ccdsid "CCDS13980.1"; havana_gene "OTTHUMG00000150456.2"; havana_transcript "OTTHUMT00000318190.1"; +chr22 HAVANA transcript 39268222 39268416 . - . gene_id "ENSG00000183741.7"; transcript_id "ENST00000216083.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CBX6"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "CBX6-003"; level 2; tag "not_organism_supported"; tag "basic"; tag "appris_principal"; havana_gene "OTTHUMG00000150456.2"; havana_transcript "OTTHUMT00000318192.2"; +chr22 HAVANA transcript 39270019 39270221 . - . gene_id "ENSG00000183741.7"; transcript_id "ENST00000216083.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CBX6"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "CBX6-003"; level 2; tag "not_organism_supported"; tag "basic"; tag "appris_principal"; havana_gene "OTTHUMG00000150456.2"; havana_transcript "OTTHUMT00000318192.2"; +chr22 HAVANA transcript 39268255 39268416 . - . gene_id "ENSG00000183741.7"; transcript_id "ENST00000469420.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CBX6"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "CBX6-002"; level 2; havana_gene "OTTHUMG00000150456.2"; havana_transcript "OTTHUMT00000318191.1"; +chr22 HAVANA transcript 39270019 39270254 . - . gene_id "ENSG00000183741.7"; transcript_id "ENST00000469420.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CBX6"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "CBX6-002"; level 2; havana_gene "OTTHUMG00000150456.2"; havana_transcript "OTTHUMT00000318191.1"; +chr22 HAVANA transcript 39378080 39378351 . + . gene_id "ENSG00000179750.11"; transcript_id "ENST00000407298.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "APOBEC3B"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "APOBEC3B-003"; level 1; tag "basic"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS58807.1"; havana_gene "OTTHUMG00000151085.1"; havana_transcript "OTTHUMT00000321235.1"; +chr22 HAVANA transcript 39378080 39378380 . + . gene_id "ENSG00000179750.11"; transcript_id "ENST00000402182.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "APOBEC3B"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "APOBEC3B-002"; level 2; tag "basic"; havana_gene "OTTHUMG00000151085.1"; havana_transcript "OTTHUMT00000321234.1"; +chr22 HAVANA transcript 39378080 39378380 . + . gene_id "ENSG00000179750.11"; transcript_id "ENST00000335760.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "APOBEC3B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "APOBEC3B-005"; level 2; havana_gene "OTTHUMG00000151085.1"; havana_transcript "OTTHUMT00000321236.1"; +chr22 HAVANA transcript 39378080 39378380 . + . gene_id "ENSG00000179750.11"; transcript_id "ENST00000333467.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "APOBEC3B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "APOBEC3B-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13982.1"; havana_gene "OTTHUMG00000151085.1"; havana_transcript "OTTHUMT00000321233.1"; +chr22 HAVANA transcript 39410134 39410266 . + . gene_id "ENSG00000244509.3"; transcript_id "ENST00000428892.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "APOBEC3C"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "APOBEC3C-002"; level 2; havana_gene "OTTHUMG00000151087.3"; havana_transcript "OTTHUMT00000321242.2"; +chr22 ENSEMBL transcript 39410134 39410367 . + . gene_id "ENSG00000243811.3"; transcript_id "ENST00000381568.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "APOBEC3D"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "APOBEC3D-201"; level 3; tag "basic"; tag "appris_principal"; havana_gene "OTTHUMG00000151084.2"; +chr22 HAVANA transcript 39476284 39476615 . + . gene_id "ENSG00000239713.3"; transcript_id "ENST00000481958.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "APOBEC3G"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "APOBEC3G-003"; level 2; havana_gene "OTTHUMG00000151081.4"; havana_transcript "OTTHUMT00000321221.1"; +chr22 HAVANA transcript 39493126 39493228 . + . gene_id "ENSG00000100298.11"; transcript_id "ENST00000348946.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "APOBEC3H"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "APOBEC3H-001"; level 2; tag "basic"; tag "appris_candidate"; tag "CCDS"; ccdsid "CCDS54531.1"; havana_gene "OTTHUMG00000151082.3"; havana_transcript "OTTHUMT00000321229.1"; +chr22 HAVANA transcript 39493126 39493228 . + . gene_id "ENSG00000100298.11"; transcript_id "ENST00000442487.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "APOBEC3H"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "APOBEC3H-202"; level 2; tag "basic"; tag "appris_candidate"; tag "CCDS"; ccdsid "CCDS13985.1"; havana_gene "OTTHUMG00000151082.3"; havana_transcript "OTTHUMT00000321229.1"; +chr22 ENSEMBL transcript 39493126 39493228 . + . gene_id "ENSG00000100298.11"; transcript_id "ENST00000421988.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "APOBEC3H"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "APOBEC3H-201"; level 3; tag "basic"; tag "CCDS"; ccdsid "CCDS54532.1"; havana_gene "OTTHUMG00000151082.3"; +chr22 HAVANA transcript 39493126 39493275 . + . gene_id "ENSG00000100298.11"; transcript_id "ENST00000474235.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "APOBEC3H"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "APOBEC3H-003"; level 2; havana_gene "OTTHUMG00000151082.3"; havana_transcript "OTTHUMT00000321568.1"; +chr22 HAVANA transcript 39493126 39493279 . + . gene_id "ENSG00000100298.11"; transcript_id "ENST00000401756.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "APOBEC3H"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "APOBEC3H-002"; level 1; tag "basic"; tag "appris_candidate_longest"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS54530.1"; havana_gene "OTTHUMG00000151082.3"; havana_transcript "OTTHUMT00000321230.1"; +chr22 HAVANA transcript 39715435 39716205 . - . gene_id "ENSG00000100316.11"; transcript_id "ENST00000401609.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RPL3"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "RPL3-003"; level 2; tag "basic"; havana_gene "OTTHUMG00000151079.8"; havana_transcript "OTTHUMT00000321198.1"; +chr22 HAVANA transcript 39715777 39716205 . - . gene_id "ENSG00000100316.11"; transcript_id "ENST00000216146.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RPL3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RPL3-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13988.1"; havana_gene "OTTHUMG00000151079.8"; havana_transcript "OTTHUMT00000321196.1"; +chr22 HAVANA transcript 39715629 39716205 . - . gene_id "ENSG00000100316.11"; transcript_id "ENST00000402527.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RPL3"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "RPL3-009"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000151079.8"; havana_transcript "OTTHUMT00000321204.2"; +chr22 HAVANA transcript 39715435 39716205 . - . gene_id "ENSG00000100316.11"; transcript_id "ENST00000453303.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RPL3"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "RPL3-012"; level 1; tag "mRNA_start_NF"; tag "mRNA_end_NF"; tag "cds_start_NF"; tag "cds_end_NF"; tag "exp_conf"; havana_gene "OTTHUMG00000151079.8"; havana_transcript "OTTHUMT00000321207.1"; +chr22 HAVANA transcript 39715601 39716205 . - . gene_id "ENSG00000100316.11"; transcript_id "ENST00000427905.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RPL3"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "RPL3-011"; level 2; tag "mRNA_start_NF"; tag "mRNA_end_NF"; tag "cds_start_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000151079.8"; havana_transcript "OTTHUMT00000321206.7"; +chr22 HAVANA transcript 39715629 39716205 . - . gene_id "ENSG00000100316.11"; transcript_id "ENST00000420536.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RPL3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "RPL3-014"; level 2; havana_gene "OTTHUMG00000151079.8"; havana_transcript "OTTHUMT00000321209.1"; +chr22 HAVANA transcript 39715655 39716205 . - . gene_id "ENSG00000100316.11"; transcript_id "ENST00000484615.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RPL3"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "RPL3-013"; level 2; havana_gene "OTTHUMG00000151079.8"; havana_transcript "OTTHUMT00000321208.1"; +chr22 HAVANA transcript 39715598 39716205 . - . gene_id "ENSG00000100316.11"; transcript_id "ENST00000460589.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RPL3"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "RPL3-010"; level 2; havana_gene "OTTHUMG00000151079.8"; havana_transcript "OTTHUMT00000321205.1"; +chr22 HAVANA transcript 39715629 39716205 . - . gene_id "ENSG00000100316.11"; transcript_id "ENST00000461967.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RPL3"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "RPL3-006"; level 2; havana_gene "OTTHUMG00000151079.8"; havana_transcript "OTTHUMT00000321201.1"; +chr22 HAVANA transcript 39715583 39716205 . - . gene_id "ENSG00000100316.11"; transcript_id "ENST00000498462.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RPL3"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "RPL3-007"; level 2; havana_gene "OTTHUMG00000151079.8"; havana_transcript "OTTHUMT00000321202.1"; +chr22 HAVANA transcript 39715631 39716205 . - . gene_id "ENSG00000100316.11"; transcript_id "ENST00000459859.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RPL3"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "RPL3-008"; level 2; havana_gene "OTTHUMG00000151079.8"; havana_transcript "OTTHUMT00000321203.1"; +chr22 ENSEMBL transcript 39715435 39716205 . - . gene_id "ENSG00000263764.1"; transcript_id "ENST00000583861.1"; gene_type "snoRNA"; gene_status "KNOWN"; gene_name "SNORD43"; transcript_type "snoRNA"; transcript_status "KNOWN"; transcript_name "SNORD43-201"; level 3; tag "basic"; +chr22 HAVANA transcript 39795651 39795745 . + . gene_id "ENSG00000100324.9"; transcript_id "ENST00000216160.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TAB1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TAB1-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13993.1"; havana_gene "OTTHUMG00000151102.2"; havana_transcript "OTTHUMT00000321313.1"; +chr22 HAVANA transcript 39795651 39795782 . + . gene_id "ENSG00000100324.9"; transcript_id "ENST00000473613.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TAB1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "TAB1-004"; level 2; havana_gene "OTTHUMG00000151102.2"; havana_transcript "OTTHUMT00000321316.1"; +chr22 HAVANA transcript 39795651 39795788 . + . gene_id "ENSG00000100324.9"; transcript_id "ENST00000331454.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TAB1"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "TAB1-002"; level 1; tag "basic"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS13992.1"; havana_gene "OTTHUMG00000151102.2"; havana_transcript "OTTHUMT00000321314.1"; +chr22 HAVANA transcript 39867715 39868064 . + . gene_id "ENSG00000128268.11"; transcript_id "ENST00000429402.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MGAT3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "MGAT3-002"; level 2; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000030185.4"; havana_transcript "OTTHUMT00000321340.1"; +chr22 HAVANA transcript 39898228 39898256 . + . gene_id "ENSG00000100335.8"; transcript_id "ENST00000478342.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MIEF1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "MIEF1-011"; level 2; tag "basic"; havana_gene "OTTHUMG00000151105.1"; havana_transcript "OTTHUMT00000321335.1"; +chr22 HAVANA transcript 39898228 39898260 . + . gene_id "ENSG00000100335.8"; transcript_id "ENST00000481746.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MIEF1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "MIEF1-012"; level 2; havana_gene "OTTHUMG00000151105.1"; havana_transcript "OTTHUMT00000321336.1"; +chr22 HAVANA transcript 39898228 39898306 . + . gene_id "ENSG00000100335.8"; transcript_id "ENST00000433117.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MIEF1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "MIEF1-002"; level 2; havana_gene "OTTHUMG00000151105.1"; havana_transcript "OTTHUMT00000321326.1"; +chr22 HAVANA transcript 39898228 39898357 . + . gene_id "ENSG00000100335.8"; transcript_id "ENST00000325301.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MIEF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "MIEF1-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13995.1"; havana_gene "OTTHUMG00000151105.1"; havana_transcript "OTTHUMT00000321325.1"; +chr22 HAVANA transcript 39898228 39898359 . + . gene_id "ENSG00000100335.8"; transcript_id "ENST00000494219.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MIEF1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "MIEF1-014"; level 2; havana_gene "OTTHUMG00000151105.1"; havana_transcript "OTTHUMT00000321338.1"; +chr22 HAVANA transcript 39898228 39898381 . + . gene_id "ENSG00000100335.8"; transcript_id "ENST00000404569.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MIEF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "MIEF1-003"; level 2; tag "alternative_5_UTR"; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13995.1"; havana_gene "OTTHUMG00000151105.1"; havana_transcript "OTTHUMT00000321327.1"; +chr22 HAVANA transcript 39898228 39898399 . + . gene_id "ENSG00000100335.8"; transcript_id "ENST00000434364.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MIEF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "MIEF1-015"; level 2; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000151105.1"; havana_transcript "OTTHUMT00000321339.1"; +chr22 HAVANA transcript 39898228 39898401 . + . gene_id "ENSG00000100335.8"; transcript_id "ENST00000428069.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MIEF1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "MIEF1-004"; level 2; havana_gene "OTTHUMG00000151105.1"; havana_transcript "OTTHUMT00000321328.1"; +chr22 HAVANA transcript 39898228 39898504 . + . gene_id "ENSG00000100335.8"; transcript_id "ENST00000479514.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MIEF1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "MIEF1-013"; level 2; havana_gene "OTTHUMG00000151105.1"; havana_transcript "OTTHUMT00000321337.1"; +chr22 HAVANA transcript 39916405 39916568 . + . gene_id "ENSG00000128272.10"; transcript_id "ENST00000337304.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATF4-002"; level 2; tag "alternative_5_UTR"; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13996.1"; havana_gene "OTTHUMG00000151099.2"; havana_transcript "OTTHUMT00000321305.1"; +chr22 ENSEMBL transcript 39916405 39916568 . + . gene_id "ENSG00000128272.10"; transcript_id "ENST00000396680.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATF4-201"; level 3; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13996.1"; havana_gene "OTTHUMG00000151099.2"; +chr22 HAVANA transcript 39928556 39928832 . - . gene_id "ENSG00000187051.4"; transcript_id "ENST00000488602.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RPS19BP1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "RPS19BP1-002"; level 2; havana_gene "OTTHUMG00000151101.1"; havana_transcript "OTTHUMT00000321308.1"; +chr22 HAVANA transcript 39928767 39928832 . - . gene_id "ENSG00000187051.4"; transcript_id "ENST00000420879.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RPS19BP1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "RPS19BP1-006"; level 2; havana_gene "OTTHUMG00000151101.1"; havana_transcript "OTTHUMT00000321312.1"; +chr22 HAVANA transcript 39928744 39928832 . - . gene_id "ENSG00000187051.4"; transcript_id "ENST00000459956.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RPS19BP1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "RPS19BP1-004"; level 2; havana_gene "OTTHUMG00000151101.1"; havana_transcript "OTTHUMT00000321310.1"; +chr22 HAVANA transcript 39928738 39928832 . - . gene_id "ENSG00000187051.4"; transcript_id "ENST00000491966.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RPS19BP1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "RPS19BP1-005"; level 2; havana_gene "OTTHUMG00000151101.1"; havana_transcript "OTTHUMT00000321311.1"; +chr22 HAVANA transcript 39928766 39928832 . - . gene_id "ENSG00000187051.4"; transcript_id "ENST00000472291.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RPS19BP1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "RPS19BP1-003"; level 2; havana_gene "OTTHUMG00000151101.1"; havana_transcript "OTTHUMT00000321309.1"; +chr22 HAVANA transcript 40296893 40297085 . + . gene_id "ENSG00000100351.12"; transcript_id "ENST00000344138.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GRAP2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GRAP2-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS13999.1"; havana_gene "OTTHUMG00000151097.1"; havana_transcript "OTTHUMT00000321295.1"; +chr22 ENSEMBL transcript 40296893 40297085 . + . gene_id "ENSG00000100351.12"; transcript_id "ENST00000543252.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GRAP2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GRAP2-203"; level 3; tag "basic"; havana_gene "OTTHUMG00000151097.1"; +chr22 ENSEMBL transcript 40296893 40297112 . + . gene_id "ENSG00000100351.12"; transcript_id "ENST00000540310.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GRAP2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GRAP2-202"; level 3; tag "basic"; havana_gene "OTTHUMG00000151097.1"; +chr22 HAVANA transcript 40440535 40440643 . - . gene_id "ENSG00000261202.1"; transcript_id "ENST00000569912.1"; gene_type "antisense"; gene_status "NOVEL"; gene_name "RP3-496C20.1"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "RP3-496C20.1-001"; level 2; tag "basic"; havana_gene "OTTHUMG00000172747.1"; havana_transcript "OTTHUMT00000420356.1"; +chr22 HAVANA transcript 40440079 40440643 . + . gene_id "ENSG00000100354.16"; transcript_id "ENST00000441751.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TNRC6B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TNRC6B-004"; level 2; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000151114.7"; havana_transcript "OTTHUMT00000321396.6"; +chr22 HAVANA transcript 40440079 40440643 . + . gene_id "ENSG00000100354.16"; transcript_id "ENST00000301923.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TNRC6B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TNRC6B-201"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS46712.1"; havana_gene "OTTHUMG00000151114.7"; havana_transcript "OTTHUMT00000321393.1"; +chr22 HAVANA transcript 40440079 40440643 . + . gene_id "ENSG00000100354.16"; transcript_id "ENST00000402203.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TNRC6B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TNRC6B-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS46712.1"; havana_gene "OTTHUMG00000151114.7"; havana_transcript "OTTHUMT00000321393.1"; +chr22 HAVANA transcript 40573782 40573928 . + . gene_id "ENSG00000100354.16"; transcript_id "ENST00000489500.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TNRC6B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "TNRC6B-005"; level 2; havana_gene "OTTHUMG00000151114.7"; havana_transcript "OTTHUMT00000321397.1"; +chr22 ENSEMBL transcript 40573782 40573928 . + . gene_id "ENSG00000100354.16"; transcript_id "ENST00000454349.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TNRC6B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TNRC6B-202"; level 3; tag "basic"; tag "CCDS"; ccdsid "CCDS54533.1"; havana_gene "OTTHUMG00000151114.7"; +chr22 HAVANA transcript 40573782 40573945 . + . gene_id "ENSG00000100354.16"; transcript_id "ENST00000335727.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TNRC6B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TNRC6B-002"; level 2; tag "basic"; tag "CCDS"; ccdsid "CCDS46713.1"; havana_gene "OTTHUMG00000151114.7"; havana_transcript "OTTHUMT00000321394.2"; +chr22 HAVANA transcript 40742399 40742506 . + . gene_id "ENSG00000239900.7"; transcript_id "ENST00000216194.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ADSL"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ADSL-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS14001.1"; havana_gene "OTTHUMG00000166425.3"; havana_transcript "OTTHUMT00000321386.1"; +chr22 HAVANA transcript 40742399 40742521 . + . gene_id "ENSG00000239900.7"; transcript_id "ENST00000466863.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ADSL"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ADSL-003"; level 2; havana_gene "OTTHUMG00000166425.3"; havana_transcript "OTTHUMT00000321388.1"; +chr22 ENSEMBL transcript 40742399 40742531 . + . gene_id "ENSG00000239900.7"; transcript_id "ENST00000454266.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ADSL"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ADSL-201"; level 3; tag "basic"; havana_gene "OTTHUMG00000166425.3"; +chr22 HAVANA transcript 40742399 40742535 . + . gene_id "ENSG00000239900.7"; transcript_id "ENST00000342312.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ADSL"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ADSL-002"; level 2; tag "basic"; tag "CCDS"; ccdsid "CCDS46714.1"; havana_gene "OTTHUMG00000166425.3"; havana_transcript "OTTHUMT00000321387.1"; +chr22 HAVANA transcript 41032690 41032763 . - . gene_id "ENSG00000196588.10"; transcript_id "ENST00000355630.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MKL1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "MKL1-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS14003.1"; havana_gene "OTTHUMG00000151146.7"; havana_transcript "OTTHUMT00000321522.1"; +chr22 ENSEMBL transcript 41032690 41032763 . - . gene_id "ENSG00000196588.10"; transcript_id "ENST00000396617.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MKL1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "MKL1-201"; level 3; tag "basic"; havana_gene "OTTHUMG00000151146.7"; +chr22 HAVANA transcript 41032696 41032763 . - . gene_id "ENSG00000196588.10"; transcript_id "ENST00000402042.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MKL1"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "MKL1-002"; level 1; tag "basic"; tag "exp_conf"; havana_gene "OTTHUMG00000151146.7"; havana_transcript "OTTHUMT00000321523.1"; +chr22 HAVANA transcript 40859439 40859614 . - . gene_id "ENSG00000196588.10"; transcript_id "ENST00000407029.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MKL1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "MKL1-003"; level 2; tag "alternative_5_UTR"; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS14003.1"; havana_gene "OTTHUMG00000151146.7"; havana_transcript "OTTHUMT00000321524.1"; +chr22 HAVANA transcript 40859423 40859614 . - . gene_id "ENSG00000196588.10"; transcript_id "ENST00000402630.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MKL1"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "MKL1-009"; level 2; tag "basic"; havana_gene "OTTHUMG00000151146.7"; havana_transcript "OTTHUMT00000321530.1"; +chr22 HAVANA transcript 40930919 40931219 . - . gene_id "ENSG00000196588.10"; transcript_id "ENST00000422851.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MKL1"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "MKL1-006"; level 1; tag "mRNA_end_NF"; tag "cds_end_NF"; tag "exp_conf"; havana_gene "OTTHUMG00000151146.7"; havana_transcript "OTTHUMT00000321527.6"; +chr22 HAVANA transcript 41032692 41032763 . - . gene_id "ENSG00000196588.10"; transcript_id "ENST00000463769.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MKL1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "MKL1-004"; level 2; havana_gene "OTTHUMG00000151146.7"; havana_transcript "OTTHUMT00000321525.2"; +chr22 HAVANA transcript 41032707 41032763 . - . gene_id "ENSG00000196588.10"; transcript_id "ENST00000466278.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MKL1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "MKL1-005"; level 2; tag "basic"; havana_gene "OTTHUMG00000151146.7"; havana_transcript "OTTHUMT00000321526.1"; +chr22 HAVANA transcript 41215432 41215708 . - . gene_id "ENSG00000100372.10"; transcript_id "ENST00000263255.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SLC25A17"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "SLC25A17-003"; level 2; havana_gene "OTTHUMG00000151139.2"; havana_transcript "OTTHUMT00000321489.1"; +chr22 HAVANA transcript 41215432 41215708 . - . gene_id "ENSG00000100372.10"; transcript_id "ENST00000491545.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SLC25A17"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "SLC25A17-002"; level 2; tag "basic"; havana_gene "OTTHUMG00000151139.2"; havana_transcript "OTTHUMT00000321488.1"; +chr22 HAVANA transcript 41215432 41215708 . - . gene_id "ENSG00000100372.10"; transcript_id "ENST00000435456.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SLC25A17"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SLC25A17-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS14005.1"; havana_gene "OTTHUMG00000151139.2"; havana_transcript "OTTHUMT00000321487.1"; +chr22 ENSEMBL transcript 41215432 41215708 . - . gene_id "ENSG00000100372.10"; transcript_id "ENST00000544408.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SLC25A17"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SLC25A17-202"; level 3; tag "basic"; havana_gene "OTTHUMG00000151139.2"; +chr22 HAVANA transcript 41215432 41215708 . - . gene_id "ENSG00000100372.10"; transcript_id "ENST00000447566.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SLC25A17"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "SLC25A17-012"; level 2; tag "not_organism_supported"; havana_gene "OTTHUMG00000151139.2"; havana_transcript "OTTHUMT00000321498.1"; +chr22 ENSEMBL transcript 41215432 41215708 . - . gene_id "ENSG00000100372.10"; transcript_id "ENST00000542412.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SLC25A17"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SLC25A17-201"; level 3; tag "basic"; havana_gene "OTTHUMG00000151139.2"; +chr22 HAVANA transcript 41215432 41215708 . - . gene_id "ENSG00000100372.10"; transcript_id "ENST00000420970.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SLC25A17"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "SLC25A17-016"; level 2; havana_gene "OTTHUMG00000151139.2"; havana_transcript "OTTHUMT00000321502.1"; +chr22 HAVANA transcript 41215432 41215708 . - . gene_id "ENSG00000100372.10"; transcript_id "ENST00000430221.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SLC25A17"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "SLC25A17-009"; level 2; havana_gene "OTTHUMG00000151139.2"; havana_transcript "OTTHUMT00000321495.1"; +chr22 HAVANA transcript 41215432 41215708 . - . gene_id "ENSG00000100372.10"; transcript_id "ENST00000427084.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SLC25A17"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "SLC25A17-011"; level 2; havana_gene "OTTHUMG00000151139.2"; havana_transcript "OTTHUMT00000321497.1"; +chr22 HAVANA transcript 41215432 41215708 . - . gene_id "ENSG00000100372.10"; transcript_id "ENST00000458600.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SLC25A17"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "SLC25A17-005"; level 2; havana_gene "OTTHUMG00000151139.2"; havana_transcript "OTTHUMT00000321491.1"; +chr22 HAVANA transcript 41215432 41215708 . - . gene_id "ENSG00000100372.10"; transcript_id "ENST00000443810.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SLC25A17"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "SLC25A17-006"; level 2; havana_gene "OTTHUMG00000151139.2"; havana_transcript "OTTHUMT00000321492.1"; +chr22 HAVANA transcript 41215432 41215708 . - . gene_id "ENSG00000100372.10"; transcript_id "ENST00000412879.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SLC25A17"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "SLC25A17-008"; level 2; havana_gene "OTTHUMG00000151139.2"; havana_transcript "OTTHUMT00000321494.1"; +chr22 HAVANA transcript 41215432 41215708 . - . gene_id "ENSG00000100372.10"; transcript_id "ENST00000426396.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SLC25A17"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "SLC25A17-014"; level 2; havana_gene "OTTHUMG00000151139.2"; havana_transcript "OTTHUMT00000321500.1"; +chr22 HAVANA transcript 41215432 41215708 . - . gene_id "ENSG00000100372.10"; transcript_id "ENST00000434193.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SLC25A17"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "SLC25A17-007"; level 2; havana_gene "OTTHUMG00000151139.2"; havana_transcript "OTTHUMT00000321493.1"; +chr22 HAVANA transcript 41215432 41215708 . - . gene_id "ENSG00000100372.10"; transcript_id "ENST00000449676.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SLC25A17"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "SLC25A17-013"; level 2; havana_gene "OTTHUMG00000151139.2"; havana_transcript "OTTHUMT00000321499.1"; +chr22 HAVANA transcript 41215432 41215708 . - . gene_id "ENSG00000100372.10"; transcript_id "ENST00000434185.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SLC25A17"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "SLC25A17-010"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000151139.2"; havana_transcript "OTTHUMT00000321496.1"; +chr22 HAVANA transcript 41253027 41253065 . - . gene_id "ENSG00000100380.8"; transcript_id "ENST00000216218.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ST13"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ST13-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS14006.1"; havana_gene "OTTHUMG00000151201.1"; havana_transcript "OTTHUMT00000321759.1"; +chr22 HAVANA transcript 41252789 41253065 . - . gene_id "ENSG00000100380.8"; transcript_id "ENST00000455824.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ST13"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ST13-002"; level 2; havana_gene "OTTHUMG00000151201.1"; havana_transcript "OTTHUMT00000321760.1"; +chr22 HAVANA transcript 41252789 41253065 . + . gene_id "ENSG00000196236.8"; transcript_id "ENST00000417688.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "XPNPEP3"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "XPNPEP3-005"; level 2; havana_gene "OTTHUMG00000151312.5"; havana_transcript "OTTHUMT00000322205.1"; +chr22 ENSEMBL transcript 41252789 41253065 . + . gene_id "ENSG00000196236.8"; transcript_id "ENST00000541156.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "XPNPEP3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "XPNPEP3-202"; level 3; tag "basic"; havana_gene "OTTHUMG00000151312.5"; +chr22 ENSEMBL transcript 41252789 41253065 . + . gene_id "ENSG00000196236.8"; transcript_id "ENST00000414396.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "XPNPEP3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "XPNPEP3-201"; level 3; tag "basic"; havana_gene "OTTHUMG00000151312.5"; +chr22 HAVANA transcript 41252789 41253065 . + . gene_id "ENSG00000196236.8"; transcript_id "ENST00000482652.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "XPNPEP3"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "XPNPEP3-002"; level 2; tag "basic"; havana_gene "OTTHUMG00000151312.5"; havana_transcript "OTTHUMT00000322202.1"; +chr22 HAVANA transcript 41252789 41253065 . + . gene_id "ENSG00000196236.8"; transcript_id "ENST00000357137.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "XPNPEP3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "XPNPEP3-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS14007.1"; havana_gene "OTTHUMG00000151312.5"; havana_transcript "OTTHUMT00000322201.2"; +chr22 HAVANA transcript 41252789 41253065 . + . gene_id "ENSG00000196236.8"; transcript_id "ENST00000428799.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "XPNPEP3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "XPNPEP3-004"; level 2; havana_gene "OTTHUMG00000151312.5"; havana_transcript "OTTHUMT00000322204.1"; +chr22 HAVANA transcript 41346877 41347193 . + . gene_id "ENSG00000100387.8"; transcript_id "ENST00000476110.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RBX1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "RBX1-003"; level 2; havana_gene "OTTHUMG00000151298.3"; havana_transcript "OTTHUMT00000322151.2"; +chr22 HAVANA transcript 41347308 41347350 . + . gene_id "ENSG00000100387.8"; transcript_id "ENST00000476110.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RBX1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "RBX1-003"; level 2; havana_gene "OTTHUMG00000151298.3"; havana_transcript "OTTHUMT00000322151.2"; +chr22 HAVANA transcript 41346877 41347193 . + . gene_id "ENSG00000100387.8"; transcript_id "ENST00000216225.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RBX1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RBX1-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS14009.1"; havana_gene "OTTHUMG00000151298.3"; havana_transcript "OTTHUMT00000322149.1"; +chr22 HAVANA transcript 41347308 41347362 . + . gene_id "ENSG00000100387.8"; transcript_id "ENST00000216225.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RBX1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RBX1-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS14009.1"; havana_gene "OTTHUMG00000151298.3"; havana_transcript "OTTHUMT00000322149.1"; +chr22 HAVANA transcript 41487240 41487516 . + . gene_id "ENSG00000100393.9"; transcript_id "ENST00000263253.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EP300"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EP300-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS14010.1"; havana_gene "OTTHUMG00000150937.1"; havana_transcript "OTTHUMT00000320600.1"; +chr22 HAVANA transcript 41487622 41487789 . + . gene_id "ENSG00000100393.9"; transcript_id "ENST00000263253.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EP300"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EP300-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS14010.1"; havana_gene "OTTHUMG00000150937.1"; havana_transcript "OTTHUMT00000320600.1"; +chr22 ENSEMBL transcript 41487240 41487516 . + . gene_id "ENSG00000221160.1"; transcript_id "ENST00000408233.1"; gene_type "miRNA"; gene_status "KNOWN"; gene_name "MIR1281"; transcript_type "miRNA"; transcript_status "KNOWN"; transcript_name "MIR1281-201"; level 3; tag "basic"; +chr22 ENSEMBL transcript 41487622 41487922 . + . gene_id "ENSG00000221160.1"; transcript_id "ENST00000408233.1"; gene_type "miRNA"; gene_status "KNOWN"; gene_name "MIR1281"; transcript_type "miRNA"; transcript_status "KNOWN"; transcript_name "MIR1281-201"; level 3; tag "basic"; +chr22 HAVANA transcript 41601075 41601208 . + . gene_id "ENSG00000100395.10"; transcript_id "ENST00000216237.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "L3MBTL2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "L3MBTL2-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS14011.1"; havana_gene "OTTHUMG00000150942.1"; havana_transcript "OTTHUMT00000320613.1"; +chr22 HAVANA transcript 41601075 41601285 . + . gene_id "ENSG00000100395.10"; transcript_id "ENST00000481902.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "L3MBTL2"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "L3MBTL2-003"; level 2; havana_gene "OTTHUMG00000150942.1"; havana_transcript "OTTHUMT00000320615.1"; +chr22 HAVANA transcript 41601075 41601305 . + . gene_id "ENSG00000100395.10"; transcript_id "ENST00000489136.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "L3MBTL2"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "L3MBTL2-006"; level 2; tag "basic"; havana_gene "OTTHUMG00000150942.1"; havana_transcript "OTTHUMT00000320618.1"; +chr22 HAVANA transcript 41601075 41601312 . + . gene_id "ENSG00000100395.10"; transcript_id "ENST00000466589.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "L3MBTL2"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "L3MBTL2-004"; level 2; havana_gene "OTTHUMG00000150942.1"; havana_transcript "OTTHUMT00000320616.1"; +chr22 HAVANA transcript 41601075 41601315 . + . gene_id "ENSG00000100395.10"; transcript_id "ENST00000453659.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "L3MBTL2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "L3MBTL2-007"; level 2; havana_gene "OTTHUMG00000150942.1"; havana_transcript "OTTHUMT00000320619.1"; +chr22 HAVANA transcript 41601075 41601324 . + . gene_id "ENSG00000100395.10"; transcript_id "ENST00000479978.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "L3MBTL2"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "L3MBTL2-002"; level 2; havana_gene "OTTHUMG00000150942.1"; havana_transcript "OTTHUMT00000320614.1"; +chr22 HAVANA transcript 41601075 41601327 . + . gene_id "ENSG00000100395.10"; transcript_id "ENST00000452106.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "L3MBTL2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "L3MBTL2-005"; level 2; havana_gene "OTTHUMG00000150942.1"; havana_transcript "OTTHUMT00000320617.1"; +chr22 HAVANA transcript 41697212 41697525 . + . gene_id "ENSG00000100403.10"; transcript_id "ENST00000352645.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ZC3H7B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ZC3H7B-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS14013.1"; havana_gene "OTTHUMG00000150969.2"; havana_transcript "OTTHUMT00000320696.1"; +chr22 HAVANA transcript 41697212 41697618 . + . gene_id "ENSG00000100403.10"; transcript_id "ENST00000486331.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ZC3H7B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ZC3H7B-002"; level 2; havana_gene "OTTHUMG00000150969.2"; havana_transcript "OTTHUMT00000320697.1"; +chr22 HAVANA transcript 41776931 41777231 . + . gene_id "ENSG00000167074.10"; transcript_id "ENST00000266304.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TEF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TEF-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS14014.1"; havana_gene "OTTHUMG00000150968.1"; havana_transcript "OTTHUMT00000320692.1"; +chr22 HAVANA transcript 41776939 41777231 . + . gene_id "ENSG00000167074.10"; transcript_id "ENST00000413942.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TEF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TEF-004"; level 2; tag "mRNA_start_NF"; tag "mRNA_end_NF"; tag "cds_start_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000150968.1"; havana_transcript "OTTHUMT00000320695.1"; +chr22 HAVANA transcript 41843028 41843260 . - . gene_id "ENSG00000183864.4"; transcript_id "ENST00000327492.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TOB2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TOB2-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS14015.1"; havana_gene "OTTHUMG00000150970.1"; havana_transcript "OTTHUMT00000320699.1"; +chr22 HAVANA transcript 41844241 41844541 . - . gene_id "ENSG00000183864.4"; transcript_id "ENST00000327492.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TOB2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TOB2-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS14015.1"; havana_gene "OTTHUMG00000150970.1"; havana_transcript "OTTHUMT00000320699.1"; +chr22 HAVANA transcript 41842790 41843260 . - . gene_id "ENSG00000183864.4"; transcript_id "ENST00000434408.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TOB2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TOB2-002"; level 2; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000150970.1"; havana_transcript "OTTHUMT00000320700.1"; +chr22 HAVANA transcript 41844241 41844541 . - . gene_id "ENSG00000183864.4"; transcript_id "ENST00000434408.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TOB2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TOB2-002"; level 2; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000150970.1"; havana_transcript "OTTHUMT00000320700.1"; +chr22 HAVANA transcript 41864730 41864885 . - . gene_id "ENSG00000100410.3"; transcript_id "ENST00000216252.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PHF5A"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PHF5A-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS14016.1"; havana_gene "OTTHUMG00000150966.1"; havana_transcript "OTTHUMT00000320686.1"; +chr22 HAVANA transcript 41864897 41865280 . - . gene_id "ENSG00000100410.3"; transcript_id "ENST00000216252.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PHF5A"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PHF5A-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS14016.1"; havana_gene "OTTHUMG00000150966.1"; havana_transcript "OTTHUMT00000320686.1"; +chr22 HAVANA transcript 41864630 41864885 . - . gene_id "ENSG00000100410.3"; transcript_id "ENST00000459687.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PHF5A"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "PHF5A-002"; level 2; havana_gene "OTTHUMG00000150966.1"; havana_transcript "OTTHUMT00000320687.1"; +chr22 HAVANA transcript 41864897 41865280 . - . gene_id "ENSG00000100410.3"; transcript_id "ENST00000459687.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PHF5A"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "PHF5A-002"; level 2; havana_gene "OTTHUMG00000150966.1"; havana_transcript "OTTHUMT00000320687.1"; +chr22 HAVANA transcript 41864504 41864885 . - . gene_id "ENSG00000100410.3"; transcript_id "ENST00000491254.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PHF5A"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "PHF5A-003"; level 2; tag "basic"; havana_gene "OTTHUMG00000150966.1"; havana_transcript "OTTHUMT00000320688.1"; +chr22 HAVANA transcript 41864897 41865280 . - . gene_id "ENSG00000100410.3"; transcript_id "ENST00000491254.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PHF5A"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "PHF5A-003"; level 2; tag "basic"; havana_gene "OTTHUMG00000150966.1"; havana_transcript "OTTHUMT00000320688.1"; +chr22 HAVANA transcript 41864417 41864885 . + . gene_id "ENSG00000100412.11"; transcript_id "ENST00000216254.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ACO2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ACO2-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS14017.1"; havana_gene "OTTHUMG00000030544.3"; havana_transcript "OTTHUMT00000259151.1"; +chr22 HAVANA transcript 41864897 41865128 . + . gene_id "ENSG00000100412.11"; transcript_id "ENST00000216254.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ACO2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ACO2-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS14017.1"; havana_gene "OTTHUMG00000030544.3"; havana_transcript "OTTHUMT00000259151.1"; +chr22 HAVANA transcript 41864417 41864885 . + . gene_id "ENSG00000100412.11"; transcript_id "ENST00000396512.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ACO2"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "ACO2-002"; level 1; tag "basic"; tag "exp_conf"; havana_gene "OTTHUMG00000030544.3"; havana_transcript "OTTHUMT00000259152.1"; +chr22 HAVANA transcript 41864897 41865133 . + . gene_id "ENSG00000100412.11"; transcript_id "ENST00000396512.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ACO2"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "ACO2-002"; level 1; tag "basic"; tag "exp_conf"; havana_gene "OTTHUMG00000030544.3"; havana_transcript "OTTHUMT00000259152.1"; +chr22 HAVANA transcript 41864417 41864885 . + . gene_id "ENSG00000100412.11"; transcript_id "ENST00000471094.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ACO2"; transcript_type "processed_transcript"; transcript_status "PUTATIVE"; transcript_name "ACO2-003"; level 2; havana_gene "OTTHUMG00000030544.3"; havana_transcript "OTTHUMT00000259153.1"; +chr22 HAVANA transcript 41864897 41865163 . + . gene_id "ENSG00000100412.11"; transcript_id "ENST00000471094.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ACO2"; transcript_type "processed_transcript"; transcript_status "PUTATIVE"; transcript_name "ACO2-003"; level 2; havana_gene "OTTHUMG00000030544.3"; havana_transcript "OTTHUMT00000259153.1"; +chr22 HAVANA transcript 42017101 42017102 . - . gene_id "ENSG00000100418.7"; transcript_id "ENST00000263256.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "DESI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "DESI1-001"; level 1; tag "basic"; tag "appris_principal"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS33652.1"; havana_gene "OTTHUMG00000044632.4"; havana_transcript "OTTHUMT00000104124.3"; +chr22 HAVANA transcript 42017331 42017607 . - . gene_id "ENSG00000100418.7"; transcript_id "ENST00000263256.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "DESI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "DESI1-001"; level 1; tag "basic"; tag "appris_principal"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS33652.1"; havana_gene "OTTHUMG00000044632.4"; havana_transcript "OTTHUMT00000104124.3"; +chr22 HAVANA transcript 41999952 42000319 . - . gene_id "ENSG00000100418.7"; transcript_id "ENST00000468151.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "DESI1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "DESI1-003"; level 2; havana_gene "OTTHUMG00000044632.4"; havana_transcript "OTTHUMT00000321902.1"; +chr22 HAVANA transcript 42000230 42000319 . - . gene_id "ENSG00000100418.7"; transcript_id "ENST00000463886.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "DESI1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "DESI1-002"; level 2; tag "basic"; havana_gene "OTTHUMG00000044632.4"; havana_transcript "OTTHUMT00000321672.1"; +chr22 HAVANA transcript 42000092 42000319 . - . gene_id "ENSG00000100418.7"; transcript_id "ENST00000482612.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "DESI1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "DESI1-004"; level 2; havana_gene "OTTHUMG00000044632.4"; havana_transcript "OTTHUMT00000321903.1"; +chr22 HAVANA transcript 42016802 42017102 . + . gene_id "ENSG00000196419.8"; transcript_id "ENST00000360079.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "XRCC6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "XRCC6-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS14021.1"; havana_gene "OTTHUMG00000151190.2"; havana_transcript "OTTHUMT00000321686.1"; +chr22 HAVANA transcript 42016802 42017102 . + . gene_id "ENSG00000196419.8"; transcript_id "ENST00000464116.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "XRCC6"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "XRCC6-007"; level 2; havana_gene "OTTHUMG00000151190.2"; havana_transcript "OTTHUMT00000321718.1"; +chr22 HAVANA transcript 42016802 42017102 . + . gene_id "ENSG00000196419.8"; transcript_id "ENST00000402580.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "XRCC6"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "XRCC6-002"; level 2; tag "basic"; havana_gene "OTTHUMG00000151190.2"; havana_transcript "OTTHUMT00000321687.1"; +chr22 ENSEMBL transcript 42016802 42017102 . + . gene_id "ENSG00000196419.8"; transcript_id "ENST00000428575.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "XRCC6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "XRCC6-201"; level 3; tag "basic"; havana_gene "OTTHUMG00000151190.2"; +chr22 HAVANA transcript 42016802 42017102 . + . gene_id "ENSG00000196419.8"; transcript_id "ENST00000359308.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "XRCC6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "XRCC6-003"; level 2; tag "alternative_5_UTR"; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS14021.1"; havana_gene "OTTHUMG00000151190.2"; havana_transcript "OTTHUMT00000321688.1"; +chr22 HAVANA transcript 42017331 42017353 . + . gene_id "ENSG00000196419.8"; transcript_id "ENST00000359308.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "XRCC6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "XRCC6-003"; level 2; tag "alternative_5_UTR"; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS14021.1"; havana_gene "OTTHUMG00000151190.2"; havana_transcript "OTTHUMT00000321688.1"; +chr22 HAVANA transcript 42016802 42017102 . + . gene_id "ENSG00000196419.8"; transcript_id "ENST00000405878.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "XRCC6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "XRCC6-006"; level 2; tag "not_organism_supported"; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS14021.1"; havana_gene "OTTHUMG00000151190.2"; havana_transcript "OTTHUMT00000321717.1"; +chr22 HAVANA transcript 42017331 42017464 . + . gene_id "ENSG00000196419.8"; transcript_id "ENST00000405878.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "XRCC6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "XRCC6-006"; level 2; tag "not_organism_supported"; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS14021.1"; havana_gene "OTTHUMG00000151190.2"; havana_transcript "OTTHUMT00000321717.1"; +chr22 HAVANA transcript 42016802 42017102 . + . gene_id "ENSG00000196419.8"; transcript_id "ENST00000405506.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "XRCC6"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "XRCC6-005"; level 2; tag "basic"; havana_gene "OTTHUMG00000151190.2"; havana_transcript "OTTHUMT00000321690.1"; +chr22 HAVANA transcript 42017331 42017607 . + . gene_id "ENSG00000196419.8"; transcript_id "ENST00000405506.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "XRCC6"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "XRCC6-005"; level 2; tag "basic"; havana_gene "OTTHUMG00000151190.2"; havana_transcript "OTTHUMT00000321690.1"; +chr22 HAVANA transcript 42177091 42177354 . + . gene_id "ENSG00000167077.8"; transcript_id "ENST00000487535.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MEI1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "MEI1-010"; level 2; havana_gene "OTTHUMG00000030083.4"; havana_transcript "OTTHUMT00000104128.1"; +chr22 HAVANA transcript 42177091 42177402 . + . gene_id "ENSG00000167077.8"; transcript_id "ENST00000476893.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MEI1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "MEI1-011"; level 2; tag "basic"; havana_gene "OTTHUMG00000030083.4"; havana_transcript "OTTHUMT00000321898.1"; +chr22 HAVANA transcript 42177091 42177449 . + . gene_id "ENSG00000167077.8"; transcript_id "ENST00000484966.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MEI1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "MEI1-012"; level 2; havana_gene "OTTHUMG00000030083.4"; havana_transcript "OTTHUMT00000321899.1"; +chr22 HAVANA transcript 42177091 42177460 . + . gene_id "ENSG00000167077.8"; transcript_id "ENST00000403492.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MEI1"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "MEI1-013"; level 2; tag "mRNA_start_NF"; tag "cds_start_NF"; havana_gene "OTTHUMG00000030083.4"; havana_transcript "OTTHUMT00000321900.1"; +chr22 HAVANA transcript 42196548 42196682 . + . gene_id "ENSG00000100147.9"; transcript_id "ENST00000402061.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CCDC134"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "CCDC134-003"; level 2; tag "basic"; havana_gene "OTTHUMG00000151262.1"; havana_transcript "OTTHUMT00000321966.1"; +chr22 HAVANA transcript 42196548 42196682 . + . gene_id "ENSG00000100147.9"; transcript_id "ENST00000255784.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CCDC134"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CCDC134-001"; level 1; tag "basic"; tag "appris_principal"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS33654.1"; havana_gene "OTTHUMG00000151262.1"; havana_transcript "OTTHUMT00000321964.1"; +chr22 HAVANA transcript 42228620 42229108 . + . gene_id "ENSG00000198911.7"; transcript_id "ENST00000361204.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SREBF2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SREBF2-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS14023.1"; havana_gene "OTTHUMG00000151261.1"; havana_transcript "OTTHUMT00000321956.1"; +chr22 HAVANA transcript 42228620 42229167 . + . gene_id "ENSG00000198911.7"; transcript_id "ENST00000424354.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SREBF2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "SREBF2-002"; level 2; havana_gene "OTTHUMG00000151261.1"; havana_transcript "OTTHUMT00000321957.1"; +chr22 HAVANA transcript 42279949 42280249 . + . gene_id "ENSG00000198911.7"; transcript_id "ENST00000491541.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SREBF2"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "SREBF2-003"; level 2; tag "basic"; havana_gene "OTTHUMG00000151261.1"; havana_transcript "OTTHUMT00000321958.1"; +chr22 HAVANA transcript 42311092 42311392 . - . gene_id "ENSG00000234965.1"; transcript_id "ENST00000457093.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SHISA8"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "SHISA8-001"; level 2; tag "mRNA_start_NF"; tag "mRNA_end_NF"; tag "cds_start_NF"; tag "cds_end_NF"; tag "basic"; tag "appris_principal"; havana_gene "OTTHUMG00000151273.4"; havana_transcript "OTTHUMT00000322048.3"; +chr22 HAVANA transcript 42343169 42343240 . - . gene_id "ENSG00000100162.10"; transcript_id "ENST00000215980.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CENPM"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CENPM-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS14025.1"; havana_gene "OTTHUMG00000151277.2"; havana_transcript "OTTHUMT00000322058.1"; +chr22 HAVANA transcript 42337302 42337578 . - . gene_id "ENSG00000100162.10"; transcript_id "ENST00000472374.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CENPM"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CENPM-003"; level 2; tag "basic"; tag "CCDS"; ccdsid "CCDS46719.1"; havana_gene "OTTHUMG00000151277.2"; havana_transcript "OTTHUMT00000322060.2"; +chr22 HAVANA transcript 42336224 42336434 . - . gene_id "ENSG00000100162.10"; transcript_id "ENST00000472374.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CENPM"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CENPM-003"; level 2; tag "basic"; tag "CCDS"; ccdsid "CCDS46719.1"; havana_gene "OTTHUMG00000151277.2"; havana_transcript "OTTHUMT00000322060.2"; +chr22 HAVANA transcript 42342964 42343240 . - . gene_id "ENSG00000100162.10"; transcript_id "ENST00000404067.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CENPM"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "CENPM-005"; level 2; tag "basic"; havana_gene "OTTHUMG00000151277.2"; havana_transcript "OTTHUMT00000322062.1"; +chr22 HAVANA transcript 42342964 42343240 . - . gene_id "ENSG00000100162.10"; transcript_id "ENST00000402338.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CENPM"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CENPM-004"; level 2; tag "basic"; havana_gene "OTTHUMG00000151277.2"; havana_transcript "OTTHUMT00000322061.1"; +chr22 HAVANA transcript 42343141 42343240 . - . gene_id "ENSG00000100162.10"; transcript_id "ENST00000407253.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CENPM"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "CENPM-008"; level 2; tag "basic"; tag "CCDS"; ccdsid "CCDS46720.1"; havana_gene "OTTHUMG00000151277.2"; havana_transcript "OTTHUMT00000322065.1"; +chr22 HAVANA transcript 42342964 42343240 . - . gene_id "ENSG00000100162.10"; transcript_id "ENST00000402420.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CENPM"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "CENPM-002"; level 1; tag "basic"; tag "exp_conf"; havana_gene "OTTHUMG00000151277.2"; havana_transcript "OTTHUMT00000322059.1"; +chr22 HAVANA transcript 42343156 42343240 . - . gene_id "ENSG00000100162.10"; transcript_id "ENST00000396437.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CENPM"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "CENPM-010"; level 2; havana_gene "OTTHUMG00000151277.2"; havana_transcript "OTTHUMT00000377601.1"; +chr22 HAVANA transcript 42343138 42343240 . - . gene_id "ENSG00000100162.10"; transcript_id "ENST00000460824.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CENPM"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "CENPM-007"; level 2; havana_gene "OTTHUMG00000151277.2"; havana_transcript "OTTHUMT00000322064.1"; +chr22 HAVANA transcript 42346169 42346228 . + . gene_id "ENSG00000205704.5"; transcript_id "ENST00000505157.1"; gene_type "pseudogene"; gene_status "KNOWN"; gene_name "LINC00634"; transcript_type "unitary_pseudogene"; transcript_status "KNOWN"; transcript_name "LINC00634-001"; level 2; ont "PGO:0000006"; havana_gene "OTTHUMG00000151274.2"; havana_transcript "OTTHUMT00000337469.1"; +chr22 HAVANA transcript 42346178 42346228 . + . gene_id "ENSG00000205704.5"; transcript_id "ENST00000381348.4"; gene_type "pseudogene"; gene_status "KNOWN"; gene_name "LINC00634"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "LINC00634-002"; level 1; tag "basic"; tag "exp_conf"; havana_gene "OTTHUMG00000151274.2"; havana_transcript "OTTHUMT00000322049.1"; +chr22 HAVANA transcript 42394708 42394728 . + . gene_id "ENSG00000183066.10"; transcript_id "ENST00000412113.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "WBP2NL"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "WBP2NL-003"; level 2; tag "not_organism_supported"; havana_gene "OTTHUMG00000151270.1"; havana_transcript "OTTHUMT00000322039.1"; +chr22 HAVANA transcript 42394708 42394728 . + . gene_id "ENSG00000183066.10"; transcript_id 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2; havana_gene "OTTHUMG00000151270.1"; havana_transcript "OTTHUMT00000322042.1"; +chr22 HAVANA transcript 42394708 42394791 . + . gene_id "ENSG00000183066.10"; transcript_id "ENST00000328823.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "WBP2NL"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "WBP2NL-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS14029.1"; havana_gene "OTTHUMG00000151270.1"; havana_transcript "OTTHUMT00000322037.1"; +chr22 HAVANA transcript 42394708 42394796 . + . gene_id "ENSG00000183066.10"; transcript_id "ENST00000461730.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "WBP2NL"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "WBP2NL-005"; level 2; tag "basic"; havana_gene "OTTHUMG00000151270.1"; havana_transcript "OTTHUMT00000322041.1"; +chr22 HAVANA transcript 42394708 42394796 . + . gene_id "ENSG00000183066.10"; transcript_id 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"CCDS33656.1"; havana_gene "OTTHUMG00000151287.4"; havana_transcript "OTTHUMT00000322089.4"; +chr22 HAVANA transcript 42486894 42487220 . - . gene_id "ENSG00000270083.1"; transcript_id "ENST00000602718.1"; gene_type "sense_intronic"; gene_status "KNOWN"; gene_name "RP1-257I20.14"; transcript_type "sense_intronic"; transcript_status "KNOWN"; transcript_name "RP1-257I20.14-001"; level 2; tag "basic"; havana_gene "OTTHUMG00000184054.1"; havana_transcript "OTTHUMT00000467937.1"; +chr22 HAVANA transcript 42486894 42486934 . + . gene_id "ENSG00000237037.5"; transcript_id "ENST00000416037.2"; gene_type "processed_transcript"; gene_status "NOVEL"; gene_name "NDUFA6-AS1"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "NDUFA6-AS1-001"; level 1; tag "basic"; tag "exp_conf"; havana_gene "OTTHUMG00000150917.6"; havana_transcript "OTTHUMT00000320522.4"; +chr22 HAVANA transcript 42486894 42486959 . + . gene_id "ENSG00000237037.5"; transcript_id "ENST00000417327.1"; gene_type "processed_transcript"; gene_status "NOVEL"; gene_name "NDUFA6-AS1"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "NDUFA6-AS1-002"; level 2; tag "basic"; havana_gene "OTTHUMG00000150917.6"; havana_transcript "OTTHUMT00000320523.1"; +chr22 HAVANA transcript 42486894 42486959 . + . gene_id "ENSG00000237037.5"; transcript_id "ENST00000439129.1"; gene_type "processed_transcript"; gene_status "NOVEL"; gene_name "NDUFA6-AS1"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "NDUFA6-AS1-006"; level 2; tag "basic"; havana_gene "OTTHUMG00000150917.6"; havana_transcript "OTTHUMT00000396922.1"; +chr22 HAVANA transcript 42486894 42486970 . + . gene_id "ENSG00000237037.5"; transcript_id "ENST00000608974.1"; gene_type "processed_transcript"; gene_status "NOVEL"; gene_name "NDUFA6-AS1"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "NDUFA6-AS1-010"; level 2; tag "basic"; havana_gene "OTTHUMG00000150917.6"; havana_transcript "OTTHUMT00000472952.1"; +chr22 HAVANA transcript 42486894 42486970 . + . gene_id "ENSG00000237037.5"; transcript_id "ENST00000536447.2"; gene_type "processed_transcript"; gene_status "NOVEL"; gene_name "NDUFA6-AS1"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "NDUFA6-AS1-007"; level 2; tag "basic"; havana_gene "OTTHUMG00000150917.6"; havana_transcript "OTTHUMT00000461749.1"; +chr22 HAVANA transcript 42486894 42487207 . + . gene_id "ENSG00000237037.5"; transcript_id "ENST00000595777.1"; gene_type "processed_transcript"; gene_status "NOVEL"; gene_name "NDUFA6-AS1"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "NDUFA6-AS1-008"; level 2; tag "basic"; havana_gene "OTTHUMG00000150917.6"; havana_transcript "OTTHUMT00000461750.1"; +chr22 HAVANA transcript 42486894 42487220 . + . gene_id "ENSG00000237037.5"; transcript_id "ENST00000600968.1"; gene_type "processed_transcript"; gene_status "NOVEL"; gene_name "NDUFA6-AS1"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "NDUFA6-AS1-009"; level 2; tag "basic"; havana_gene "OTTHUMG00000150917.6"; havana_transcript "OTTHUMT00000461751.1"; +chr22 HAVANA transcript 42486894 42487220 . + . gene_id "ENSG00000237037.5"; transcript_id "ENST00000434834.1"; gene_type "processed_transcript"; gene_status "NOVEL"; gene_name "NDUFA6-AS1"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "NDUFA6-AS1-003"; level 2; tag "basic"; havana_gene "OTTHUMG00000150917.6"; havana_transcript "OTTHUMT00000320524.2"; +chr22 HAVANA transcript 42765372 42765648 . - . gene_id "ENSG00000229891.1"; transcript_id "ENST00000432473.1"; gene_type "lincRNA"; gene_status "NOVEL"; gene_name "Z83851.1"; transcript_type "lincRNA"; transcript_status "KNOWN"; transcript_name "Z83851.1-003"; level 2; havana_gene "OTTHUMG00000150696.1"; havana_transcript "OTTHUMT00000319656.1"; +chr22 HAVANA transcript 42765372 42765648 . - . gene_id "ENSG00000229891.1"; transcript_id "ENST00000412060.1"; gene_type "lincRNA"; gene_status "NOVEL"; gene_name "Z83851.1"; transcript_type "lincRNA"; transcript_status "KNOWN"; transcript_name "Z83851.1-002"; level 1; tag "exp_conf"; havana_gene "OTTHUMG00000150696.1"; havana_transcript "OTTHUMT00000319655.1"; +chr22 HAVANA transcript 42765372 42765648 . - . gene_id "ENSG00000229891.1"; transcript_id "ENST00000424852.1"; gene_type "lincRNA"; gene_status "NOVEL"; gene_name "Z83851.1"; transcript_type "lincRNA"; transcript_status "KNOWN"; transcript_name "Z83851.1-001"; level 2; tag "basic"; havana_gene "OTTHUMG00000150696.1"; havana_transcript "OTTHUMT00000319654.1"; +chr22 HAVANA transcript 42833470 42833746 . + . gene_id "ENSG00000230107.1"; transcript_id "ENST00000428765.1"; gene_type "lincRNA"; gene_status "NOVEL"; gene_name "CTA-126B4.7"; transcript_type "lincRNA"; transcript_status "KNOWN"; transcript_name "CTA-126B4.7-001"; level 1; tag "basic"; tag "exp_conf"; havana_gene "OTTHUMG00000150919.1"; havana_transcript "OTTHUMT00000320530.1"; +chr22 HAVANA transcript 42833944 42834028 . + . gene_id "ENSG00000230107.1"; transcript_id "ENST00000428765.1"; gene_type "lincRNA"; gene_status "NOVEL"; gene_name "CTA-126B4.7"; transcript_type "lincRNA"; transcript_status "KNOWN"; transcript_name "CTA-126B4.7-001"; level 1; tag "basic"; tag "exp_conf"; havana_gene "OTTHUMG00000150919.1"; havana_transcript "OTTHUMT00000320530.1"; +chr22 HAVANA transcript 43010876 43011069 . - . gene_id "ENSG00000100227.13"; transcript_id "ENST00000445215.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "POLDIP3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "POLDIP3-003"; level 2; havana_gene "OTTHUMG00000150887.2"; havana_transcript "OTTHUMT00000320435.1"; +chr22 HAVANA transcript 43011218 43011661 . - . gene_id "ENSG00000100227.13"; transcript_id "ENST00000445215.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "POLDIP3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "POLDIP3-003"; level 2; havana_gene "OTTHUMG00000150887.2"; havana_transcript "OTTHUMT00000320435.1"; +chr22 HAVANA transcript 43010938 43011069 . - . gene_id "ENSG00000100227.13"; transcript_id "ENST00000348657.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "POLDIP3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "POLDIP3-002"; level 2; tag "basic"; tag "CCDS"; ccdsid "CCDS14039.1"; havana_gene "OTTHUMG00000150887.2"; havana_transcript "OTTHUMT00000320434.1"; +chr22 HAVANA transcript 43011218 43011661 . - . gene_id "ENSG00000100227.13"; transcript_id "ENST00000348657.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "POLDIP3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "POLDIP3-002"; level 2; tag "basic"; tag "CCDS"; ccdsid "CCDS14039.1"; havana_gene "OTTHUMG00000150887.2"; havana_transcript "OTTHUMT00000320434.1"; +chr22 HAVANA transcript 43010969 43011069 . - . gene_id "ENSG00000100227.13"; transcript_id "ENST00000252115.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "POLDIP3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "POLDIP3-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS14038.1"; havana_gene "OTTHUMG00000150887.2"; havana_transcript "OTTHUMT00000320433.1"; +chr22 HAVANA transcript 43011218 43011661 . - . gene_id "ENSG00000100227.13"; transcript_id "ENST00000252115.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "POLDIP3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "POLDIP3-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS14038.1"; havana_gene "OTTHUMG00000150887.2"; havana_transcript "OTTHUMT00000320433.1"; +chr22 ENSEMBL transcript 43010864 43011069 . - . gene_id "ENSG00000100227.13"; transcript_id "ENST00000339677.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "POLDIP3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "POLDIP3-201"; level 3; tag "basic"; havana_gene "OTTHUMG00000150887.2"; +chr22 ENSEMBL transcript 43011218 43011661 . - . gene_id "ENSG00000100227.13"; transcript_id "ENST00000339677.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "POLDIP3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "POLDIP3-201"; level 3; tag "basic"; havana_gene "OTTHUMG00000150887.2"; +chr22 HAVANA transcript 43010867 43011069 . - . gene_id "ENSG00000100227.13"; transcript_id "ENST00000454057.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "POLDIP3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "POLDIP3-005"; level 2; havana_gene "OTTHUMG00000150887.2"; havana_transcript "OTTHUMT00000320437.1"; +chr22 HAVANA transcript 43011218 43011661 . - . gene_id "ENSG00000100227.13"; transcript_id "ENST00000454057.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "POLDIP3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "POLDIP3-005"; level 2; havana_gene "OTTHUMG00000150887.2"; havana_transcript "OTTHUMT00000320437.1"; +chr22 HAVANA transcript 43010884 43011069 . - . gene_id "ENSG00000100227.13"; transcript_id "ENST00000463133.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "POLDIP3"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "POLDIP3-004"; level 2; havana_gene "OTTHUMG00000150887.2"; havana_transcript "OTTHUMT00000320436.1"; +chr22 HAVANA transcript 43011218 43011661 . - . gene_id "ENSG00000100227.13"; transcript_id "ENST00000463133.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "POLDIP3"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "POLDIP3-004"; level 2; havana_gene "OTTHUMG00000150887.2"; havana_transcript "OTTHUMT00000320436.1"; +chr22 HAVANA transcript 43010793 43011069 . + . gene_id "ENSG00000270022.2"; transcript_id "ENST00000602478.1"; gene_type "lincRNA"; gene_status "KNOWN"; gene_name "RNU12"; transcript_type "lincRNA"; transcript_status "KNOWN"; transcript_name "RNU12-001"; level 2; havana_gene "OTTHUMG00000183993.1"; havana_transcript "OTTHUMT00000467709.1"; +chr22 HAVANA transcript 43011218 43011249 . + . gene_id "ENSG00000270022.2"; transcript_id "ENST00000602478.1"; gene_type "lincRNA"; gene_status "KNOWN"; gene_name "RNU12"; transcript_type "lincRNA"; transcript_status "KNOWN"; transcript_name "RNU12-001"; level 2; havana_gene "OTTHUMG00000183993.1"; havana_transcript "OTTHUMT00000467709.1"; +chr22 ENSEMBL transcript 43010793 43011069 . + . gene_id "ENSG00000270022.2"; transcript_id "ENST00000362512.1"; gene_type "lincRNA"; gene_status "KNOWN"; gene_name "RNU12"; transcript_type "snRNA"; transcript_status "KNOWN"; transcript_name "RNU12-201"; level 3; tag "basic"; havana_gene "OTTHUMG00000183993.1"; +chr22 ENSEMBL transcript 43011218 43011249 . + . gene_id "ENSG00000270022.2"; transcript_id "ENST00000362512.1"; gene_type "lincRNA"; gene_status "KNOWN"; gene_name "RNU12"; transcript_type "snRNA"; transcript_status "KNOWN"; transcript_name "RNU12-201"; level 3; tag "basic"; havana_gene "OTTHUMG00000183993.1"; +chr22 HAVANA transcript 43045575 43045758 . - . gene_id "ENSG00000100243.16"; transcript_id "ENST00000352397.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CYB5R3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CYB5R3-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS33658.1"; havana_gene "OTTHUMG00000150745.5"; havana_transcript "OTTHUMT00000320439.1"; +chr22 ENSEMBL transcript 43160927 43160965 . - . gene_id "ENSG00000200448.1"; transcript_id "ENST00000363578.1"; gene_type "misc_RNA"; gene_status "NOVEL"; gene_name "Y_RNA"; transcript_type "misc_RNA"; transcript_status "NOVEL"; transcript_name "Y_RNA.164-201"; level 3; tag "basic"; +chr22 HAVANA transcript 43411260 43411569 . - . gene_id "ENSG00000100266.13"; transcript_id "ENST00000263246.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PACSIN2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PACSIN2-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS43023.1"; havana_gene "OTTHUMG00000150701.5"; havana_transcript "OTTHUMT00000319665.1"; +chr22 HAVANA transcript 43411260 43411569 . - . gene_id "ENSG00000100266.13"; transcript_id "ENST00000337959.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PACSIN2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PACSIN2-201"; level 2; tag "basic"; tag "CCDS"; ccdsid "CCDS54536.1"; havana_gene "OTTHUMG00000150701.5"; havana_transcript "OTTHUMT00000319667.1"; +chr22 HAVANA transcript 43411260 43411569 . - . gene_id "ENSG00000100266.13"; transcript_id "ENST00000453643.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PACSIN2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PACSIN2-007"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000150701.5"; havana_transcript "OTTHUMT00000319671.1"; +chr22 HAVANA transcript 43411260 43411569 . - . gene_id "ENSG00000100266.13"; transcript_id "ENST00000445706.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PACSIN2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "PACSIN2-010"; level 2; havana_gene "OTTHUMG00000150701.5"; havana_transcript "OTTHUMT00000319674.1"; +chr22 HAVANA transcript 43539401 43539598 . - . gene_id "ENSG00000100294.8"; transcript_id "ENST00000290429.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MCAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "MCAT-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS33660.1"; havana_gene "OTTHUMG00000150704.2"; havana_transcript "OTTHUMT00000319677.2"; +chr22 HAVANA transcript 43539371 43539598 . - . gene_id "ENSG00000100294.8"; transcript_id "ENST00000327555.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MCAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "MCAT-002"; level 2; tag "basic"; tag "CCDS"; ccdsid "CCDS14045.1"; havana_gene "OTTHUMG00000150704.2"; havana_transcript "OTTHUMT00000319678.1"; +chr22 HAVANA transcript 43539311 43539598 . - . gene_id "ENSG00000100294.8"; transcript_id "ENST00000608052.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MCAT"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "MCAT-004"; level 2; tag "mRNA_start_NF"; tag "cds_start_NF"; havana_gene "OTTHUMG00000150704.2"; havana_transcript "OTTHUMT00000472338.1"; +chr22 HAVANA transcript 43539311 43539598 . - . gene_id "ENSG00000100294.8"; transcript_id "ENST00000464244.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "MCAT"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "MCAT-003"; level 2; tag "basic"; havana_gene "OTTHUMG00000150704.2"; havana_transcript "OTTHUMT00000319679.1"; +chr22 HAVANA transcript 43583546 43583977 . - . gene_id "ENSG00000100304.12"; transcript_id "ENST00000216129.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TTLL12"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TTLL12-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS14047.1"; havana_gene "OTTHUMG00000150682.3"; havana_transcript "OTTHUMT00000319611.1"; +chr22 HAVANA transcript 43659781 43660154 . - . gene_id "ENSG00000159307.14"; transcript_id "ENST00000449304.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SCUBE1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SCUBE1-009"; level 2; tag "mRNA_start_NF"; tag "mRNA_end_NF"; tag "cds_start_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000150679.4"; havana_transcript "OTTHUMT00000319590.1"; +chr22 HAVANA transcript 44351027 44351300 . + . gene_id "ENSG00000100347.10"; transcript_id "ENST00000350028.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SAMM50"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SAMM50-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS14055.1"; havana_gene "OTTHUMG00000150557.4"; havana_transcript "OTTHUMT00000318898.2"; +chr22 HAVANA transcript 44351027 44351303 . + . gene_id "ENSG00000100347.10"; transcript_id "ENST00000493161.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SAMM50"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "SAMM50-004"; level 2; tag "basic"; havana_gene "OTTHUMG00000150557.4"; havana_transcript "OTTHUMT00000318982.2"; +chr22 ENSEMBL transcript 44351027 44351303 . + . gene_id "ENSG00000100347.10"; transcript_id "ENST00000396202.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SAMM50"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SAMM50-201"; level 3; tag "basic"; havana_gene "OTTHUMG00000150557.4"; +chr22 HAVANA transcript 44351027 44351303 . + . gene_id "ENSG00000224856.2"; transcript_id "ENST00000430869.2"; gene_type "pseudogene"; gene_status "KNOWN"; gene_name "RP4-796I17.5"; transcript_type "processed_pseudogene"; transcript_status "KNOWN"; transcript_name "RP4-796I17.5-001"; level 1; ont "PGO:0000004"; tag "pseudo_consens"; havana_gene "OTTHUMG00000150556.2"; havana_transcript "OTTHUMT00000318897.2"; +chr22 HAVANA transcript 44419569 44419913 . + . gene_id "ENSG00000188677.10"; transcript_id "ENST00000338758.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PARVB"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PARVB-002"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS14056.1"; havana_gene "OTTHUMG00000150665.4"; havana_transcript "OTTHUMT00000319518.2"; +chr22 HAVANA transcript 44419569 44419913 . + . gene_id "ENSG00000188677.10"; transcript_id "ENST00000402876.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PARVB"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "PARVB-006"; level 1; tag "exp_conf"; havana_gene "OTTHUMG00000150665.4"; havana_transcript "OTTHUMT00000319522.2"; +chr22 HAVANA transcript 44464620 44464940 . + . gene_id "ENSG00000188677.10"; transcript_id "ENST00000404989.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PARVB"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "PARVB-003"; level 1; tag "basic"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS58808.1"; havana_gene "OTTHUMG00000150665.4"; havana_transcript "OTTHUMT00000319519.1"; +chr22 HAVANA transcript 45559663 45559727 . - . gene_id "ENSG00000226328.2"; transcript_id "ENST00000426282.2"; gene_type "lincRNA"; gene_status "NOVEL"; gene_name "CTA-217C2.1"; transcript_type "lincRNA"; transcript_status "KNOWN"; transcript_name "CTA-217C2.1-001"; level 1; tag "basic"; tag "exp_conf"; havana_gene "OTTHUMG00000151264.3"; havana_transcript "OTTHUMT00000321991.2"; +chr22 HAVANA transcript 45559541 45559727 . - . gene_id "ENSG00000226328.2"; transcript_id "ENST00000432502.1"; gene_type "lincRNA"; gene_status "NOVEL"; gene_name "CTA-217C2.1"; transcript_type "lincRNA"; transcript_status "KNOWN"; transcript_name "CTA-217C2.1-002"; level 2; havana_gene "OTTHUMG00000151264.3"; havana_transcript "OTTHUMT00000321992.1"; +chr22 HAVANA transcript 45559451 45559721 . + . gene_id "ENSG00000093000.14"; transcript_id "ENST00000347635.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUP50"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUP50-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS14062.1"; havana_gene "OTTHUMG00000151265.3"; havana_transcript "OTTHUMT00000321993.2"; +chr22 HAVANA transcript 45559451 45559727 . + . gene_id "ENSG00000093000.14"; transcript_id "ENST00000407019.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUP50"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUP50-002"; level 2; tag "basic"; tag "CCDS"; ccdsid "CCDS14063.1"; havana_gene "OTTHUMG00000151265.3"; havana_transcript "OTTHUMT00000321994.2"; +chr22 HAVANA transcript 45559451 45559727 . + . gene_id "ENSG00000093000.14"; transcript_id "ENST00000424634.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUP50"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUP50-005"; level 2; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000151265.3"; havana_transcript "OTTHUMT00000321997.1"; +chr22 HAVANA transcript 45559451 45559727 . + . gene_id "ENSG00000093000.14"; transcript_id "ENST00000417702.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUP50"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUP50-007"; level 2; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000151265.3"; havana_transcript "OTTHUMT00000321999.1"; +chr22 HAVANA transcript 45559451 45559727 . + . gene_id "ENSG00000093000.14"; transcript_id "ENST00000497960.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUP50"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "NUP50-006"; level 2; havana_gene "OTTHUMG00000151265.3"; havana_transcript "OTTHUMT00000321998.1"; +chr22 HAVANA transcript 45559451 45559727 . + . gene_id "ENSG00000093000.14"; transcript_id "ENST00000461437.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUP50"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "NUP50-008"; level 2; havana_gene "OTTHUMG00000151265.3"; havana_transcript "OTTHUMT00000322000.1"; +chr22 ENSEMBL transcript 45559451 45559727 . + . gene_id "ENSG00000093000.14"; transcript_id "ENST00000425733.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUP50"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUP50-201"; level 3; tag "basic"; havana_gene "OTTHUMG00000151265.3"; +chr22 HAVANA transcript 45559451 45559727 . + . gene_id "ENSG00000093000.14"; transcript_id "ENST00000434760.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUP50"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "NUP50-009"; level 2; havana_gene "OTTHUMG00000151265.3"; havana_transcript "OTTHUMT00000322001.1"; +chr22 HAVANA transcript 45559451 45559727 . + . gene_id "ENSG00000093000.14"; transcript_id "ENST00000430547.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUP50"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "NUP50-010"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000151265.3"; havana_transcript "OTTHUMT00000322002.1"; +chr22 HAVANA transcript 45559451 45559727 . + . gene_id "ENSG00000093000.14"; transcript_id "ENST00000484186.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUP50"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "NUP50-015"; level 2; havana_gene "OTTHUMG00000151265.3"; havana_transcript "OTTHUMT00000322007.1"; +chr22 HAVANA transcript 45559451 45559727 . + . gene_id "ENSG00000093000.14"; transcript_id "ENST00000445721.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUP50"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUP50-011"; level 2; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000151265.3"; havana_transcript "OTTHUMT00000322003.1"; +chr22 HAVANA transcript 45559451 45559727 . + . gene_id "ENSG00000093000.14"; transcript_id "ENST00000493456.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUP50"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "NUP50-012"; level 2; havana_gene "OTTHUMG00000151265.3"; havana_transcript "OTTHUMT00000322004.1"; +chr22 HAVANA transcript 45559451 45559727 . + . gene_id "ENSG00000093000.14"; transcript_id "ENST00000396096.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUP50"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUP50-003"; level 2; tag "basic"; tag "CCDS"; ccdsid "CCDS14063.1"; havana_gene "OTTHUMG00000151265.3"; havana_transcript "OTTHUMT00000321995.1"; +chr22 HAVANA transcript 45559451 45559727 . + . gene_id "ENSG00000093000.14"; transcript_id "ENST00000461194.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUP50"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "NUP50-014"; level 2; havana_gene "OTTHUMG00000151265.3"; havana_transcript "OTTHUMT00000322006.1"; +chr22 HAVANA transcript 45559451 45559727 . + . gene_id "ENSG00000093000.14"; transcript_id "ENST00000432340.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUP50"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUP50-013"; level 2; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000151265.3"; havana_transcript "OTTHUMT00000322005.1"; +chr22 HAVANA transcript 45631295 45631555 . - . gene_id "ENSG00000100364.14"; transcript_id "ENST00000486640.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "KIAA0930"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "KIAA0930-008"; level 2; havana_gene "OTTHUMG00000151263.3"; havana_transcript "OTTHUMT00000321982.1"; +chr22 HAVANA transcript 45659467 45659621 . - . gene_id "ENSG00000273287.1"; transcript_id "ENST00000609206.1"; gene_type "lincRNA"; gene_status "NOVEL"; gene_name "CTA-268H5.14"; transcript_type "lincRNA"; transcript_status "KNOWN"; transcript_name "CTA-268H5.14-001"; level 2; tag "basic"; havana_gene "OTTHUMG00000186139.1"; havana_transcript "OTTHUMT00000472313.1"; +chr22 HAVANA transcript 45705750 45706004 . + . gene_id "ENSG00000100376.7"; transcript_id "ENST00000405673.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FAM118A"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "FAM118A-003"; level 1; tag "basic"; tag "exp_conf"; havana_gene "OTTHUMG00000151338.1"; havana_transcript "OTTHUMT00000322262.1"; +chr22 HAVANA transcript 45705750 45706017 . + . gene_id "ENSG00000100376.7"; transcript_id "ENST00000477714.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FAM118A"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "FAM118A-005"; level 2; havana_gene "OTTHUMG00000151338.1"; havana_transcript "OTTHUMT00000322264.1"; +chr22 HAVANA transcript 46646212 46646488 . - . gene_id "ENSG00000205643.6"; transcript_id "ENST00000381037.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CDPF1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "CDPF1-002"; level 2; havana_gene "OTTHUMG00000030672.4"; havana_transcript "OTTHUMT00000318467.1"; +chr22 HAVANA transcript 46646212 46646488 . - . gene_id "ENSG00000205643.6"; transcript_id "ENST00000475605.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CDPF1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "CDPF1-006"; level 2; tag "basic"; havana_gene "OTTHUMG00000030672.4"; havana_transcript "OTTHUMT00000318746.1"; +chr22 HAVANA transcript 46646212 46646488 . - . gene_id "ENSG00000205643.6"; transcript_id "ENST00000474256.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CDPF1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "CDPF1-005"; level 2; havana_gene "OTTHUMG00000030672.4"; havana_transcript "OTTHUMT00000318745.1"; +chr22 HAVANA transcript 46684153 46684406 . + . gene_id "ENSG00000075234.12"; transcript_id "ENST00000451998.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TTC38"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "TTC38-006"; level 2; tag "mRNA_start_NF"; tag "cds_start_NF"; havana_gene "OTTHUMG00000150494.1"; havana_transcript "OTTHUMT00000318474.1"; +chr22 HAVANA transcript 46692432 46692637 . + . gene_id "ENSG00000075218.14"; transcript_id "ENST00000454366.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GTSE1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GTSE1-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS14074.2"; havana_gene "OTTHUMG00000150486.2"; havana_transcript "OTTHUMT00000318360.2"; +chr22 HAVANA transcript 46731427 46731641 . + . gene_id "ENSG00000100416.8"; transcript_id "ENST00000381019.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TRMU"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "TRMU-007"; level 2; tag "basic"; havana_gene "OTTHUMG00000150424.2"; havana_transcript "OTTHUMT00000318364.1"; +chr22 HAVANA transcript 46731427 46731770 . + . gene_id "ENSG00000100416.8"; transcript_id "ENST00000465378.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TRMU"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "TRMU-012"; level 2; havana_gene "OTTHUMG00000150424.2"; havana_transcript "OTTHUMT00000318369.1"; +chr22 HAVANA transcript 46731427 46731770 . + . gene_id "ENSG00000100416.8"; transcript_id "ENST00000496831.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TRMU"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "TRMU-013"; level 2; tag "mRNA_end_NF"; havana_gene "OTTHUMG00000150424.2"; havana_transcript "OTTHUMT00000318370.1"; +chr22 ENSEMBL transcript 46731427 46731770 . + . gene_id "ENSG00000100416.8"; transcript_id "ENST00000424260.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TRMU"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TRMU-201"; level 3; tag "basic"; havana_gene "OTTHUMG00000150424.2"; +chr22 HAVANA transcript 46731427 46731770 . + . gene_id "ENSG00000100416.8"; transcript_id "ENST00000485175.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TRMU"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "TRMU-014"; level 2; havana_gene "OTTHUMG00000150424.2"; havana_transcript "OTTHUMT00000318371.1"; +chr22 HAVANA transcript 46731427 46731770 . + . gene_id "ENSG00000100416.8"; transcript_id "ENST00000493556.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TRMU"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "TRMU-015"; level 2; havana_gene "OTTHUMG00000150424.2"; havana_transcript "OTTHUMT00000318372.1"; +chr22 HAVANA transcript 47158461 47158551 . - . gene_id "ENSG00000260708.1"; transcript_id "ENST00000564152.1"; gene_type "antisense"; gene_status "NOVEL"; gene_name "CTA-29F11.1"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "CTA-29F11.1-001"; level 2; tag "basic"; havana_gene "OTTHUMG00000172744.1"; havana_transcript "OTTHUMT00000420346.1"; +chr22 HAVANA transcript 47159042 47159351 . - . gene_id "ENSG00000260708.1"; transcript_id "ENST00000564152.1"; gene_type "antisense"; gene_status "NOVEL"; gene_name "CTA-29F11.1"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "CTA-29F11.1-001"; level 2; tag "basic"; havana_gene "OTTHUMG00000172744.1"; havana_transcript "OTTHUMT00000420346.1"; +chr22 HAVANA transcript 47158275 47158517 . + . gene_id "ENSG00000054611.9"; transcript_id "ENST00000337137.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TBC1D22A"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TBC1D22A-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS14078.1"; havana_gene "OTTHUMG00000150332.3"; havana_transcript "OTTHUMT00000317600.3"; +chr22 ENSEMBL transcript 47158275 47158528 . + . gene_id "ENSG00000054611.9"; transcript_id "ENST00000380995.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TBC1D22A"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TBC1D22A-201"; level 3; tag "basic"; havana_gene "OTTHUMG00000150332.3"; +chr22 HAVANA transcript 47158275 47158547 . + . gene_id "ENSG00000054611.9"; transcript_id "ENST00000441936.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TBC1D22A"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "TBC1D22A-008"; level 2; havana_gene "OTTHUMG00000150332.3"; havana_transcript "OTTHUMT00000317931.1"; +chr22 HAVANA transcript 47158275 47158551 . + . gene_id "ENSG00000054611.9"; transcript_id "ENST00000486163.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TBC1D22A"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "TBC1D22A-010"; level 2; havana_gene "OTTHUMG00000150332.3"; havana_transcript "OTTHUMT00000317933.1"; +chr22 HAVANA transcript 47158275 47158551 . + . gene_id "ENSG00000054611.9"; transcript_id "ENST00000407381.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TBC1D22A"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "TBC1D22A-002"; level 2; tag "basic"; havana_gene "OTTHUMG00000150332.3"; havana_transcript "OTTHUMT00000317925.1"; +chr22 HAVANA transcript 47158275 47158551 . + . gene_id "ENSG00000054611.9"; transcript_id "ENST00000355704.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TBC1D22A"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TBC1D22A-003"; level 2; tag "basic"; havana_gene "OTTHUMG00000150332.3"; havana_transcript "OTTHUMT00000317926.1"; +chr22 HAVANA transcript 47158275 47158551 . + . gene_id "ENSG00000054611.9"; transcript_id "ENST00000394449.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TBC1D22A"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "TBC1D22A-004"; level 2; havana_gene "OTTHUMG00000150332.3"; havana_transcript "OTTHUMT00000317927.1"; +chr22 HAVANA transcript 47158275 47158551 . + . gene_id "ENSG00000054611.9"; transcript_id "ENST00000496139.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TBC1D22A"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "TBC1D22A-007"; level 2; havana_gene "OTTHUMG00000150332.3"; havana_transcript "OTTHUMT00000317930.1"; +chr22 HAVANA transcript 47158275 47158551 . + . gene_id "ENSG00000054611.9"; transcript_id "ENST00000472791.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TBC1D22A"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "TBC1D22A-009"; level 2; tag "basic"; havana_gene "OTTHUMG00000150332.3"; havana_transcript "OTTHUMT00000317932.1"; +chr22 HAVANA transcript 47159042 47159162 . + . gene_id "ENSG00000054611.9"; transcript_id "ENST00000472791.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TBC1D22A"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "TBC1D22A-009"; level 2; tag "basic"; havana_gene "OTTHUMG00000150332.3"; havana_transcript "OTTHUMT00000317932.1"; +chr22 HAVANA transcript 47158275 47158551 . + . gene_id "ENSG00000054611.9"; transcript_id "ENST00000441162.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TBC1D22A"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "TBC1D22A-005"; level 2; havana_gene "OTTHUMG00000150332.3"; havana_transcript "OTTHUMT00000317928.1"; +chr22 HAVANA transcript 47159042 47159351 . + . gene_id "ENSG00000054611.9"; transcript_id "ENST00000441162.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TBC1D22A"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "TBC1D22A-005"; level 2; havana_gene "OTTHUMG00000150332.3"; havana_transcript "OTTHUMT00000317928.1"; +chr22 HAVANA transcript 48254482 48254782 . + . gene_id "ENSG00000230345.1"; transcript_id "ENST00000449941.1"; gene_type "lincRNA"; gene_status "NOVEL"; gene_name "RP13-455A7.1"; transcript_type "lincRNA"; transcript_status "KNOWN"; transcript_name "RP13-455A7.1-001"; level 2; tag "basic"; havana_gene "OTTHUMG00000150319.1"; havana_transcript "OTTHUMT00000317554.1"; +chr22 HAVANA transcript 50154317 50154617 . - . gene_id "ENSG00000214727.2"; transcript_id "ENST00000398869.2"; gene_type "pseudogene"; gene_status "KNOWN"; gene_name "RPL5P35"; transcript_type "unprocessed_pseudogene"; transcript_status "KNOWN"; transcript_name "RPL5P35-001"; level 1; ont "PGO:0000005"; tag "pseudo_consens"; havana_gene "OTTHUMG00000150295.1"; havana_transcript "OTTHUMT00000317426.1"; +chr22 HAVANA transcript 50232467 50232767 . - . gene_id "ENSG00000260613.1"; transcript_id "ENST00000565177.1"; gene_type "lincRNA"; gene_status "NOVEL"; gene_name "RP3-522J7.6"; transcript_type "lincRNA"; transcript_status "KNOWN"; transcript_name "RP3-522J7.6-001"; level 2; tag "basic"; havana_gene "OTTHUMG00000172739.1"; havana_transcript "OTTHUMT00000420340.1"; +chr22 HAVANA transcript 50312242 50312518 . - . gene_id "ENSG00000182858.9"; transcript_id "ENST00000330817.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALG12"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALG12-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS14081.1"; havana_gene "OTTHUMG00000150289.3"; havana_transcript "OTTHUMT00000317405.2"; +chr22 HAVANA transcript 50312242 50312282 . + . gene_id "ENSG00000184164.10"; transcript_id "ENST00000404488.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CRELD2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CRELD2-002"; level 2; tag "basic"; tag "appris_candidate_longest"; tag "CCDS"; ccdsid "CCDS46730.1"; havana_gene "OTTHUMG00000150292.4"; havana_transcript "OTTHUMT00000317410.1"; +chr22 HAVANA transcript 50312242 50312343 . + . gene_id "ENSG00000184164.10"; transcript_id "ENST00000328268.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CRELD2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CRELD2-001"; level 2; tag "basic"; tag "appris_candidate"; tag "CCDS"; ccdsid "CCDS14082.1"; havana_gene "OTTHUMG00000150292.4"; havana_transcript "OTTHUMT00000317409.1"; +chr22 HAVANA transcript 50312242 50312380 . + . gene_id "ENSG00000184164.10"; transcript_id "ENST00000483652.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CRELD2"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "CRELD2-004"; level 2; havana_gene "OTTHUMG00000150292.4"; havana_transcript "OTTHUMT00000317412.2"; +chr22 HAVANA transcript 50312242 50312380 . + . gene_id "ENSG00000184164.10"; transcript_id "ENST00000407217.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CRELD2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CRELD2-003"; level 2; tag "basic"; havana_gene "OTTHUMG00000150292.4"; havana_transcript "OTTHUMT00000317411.1"; +chr22 HAVANA transcript 50312242 50312380 . + . gene_id "ENSG00000184164.10"; transcript_id "ENST00000403427.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CRELD2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CRELD2-005"; level 2; tag "basic"; havana_gene "OTTHUMG00000150292.4"; havana_transcript "OTTHUMT00000317413.1"; +chr22 HAVANA transcript 50312242 50312417 . + . gene_id "ENSG00000184164.10"; transcript_id "ENST00000482956.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CRELD2"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "CRELD2-006"; level 2; havana_gene "OTTHUMG00000150292.4"; havana_transcript "OTTHUMT00000317414.1"; +chr22 HAVANA transcript 50354206 50354415 . + . gene_id "ENSG00000198355.4"; transcript_id "ENST00000467480.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PIM3"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "PIM3-002"; level 2; havana_gene "OTTHUMG00000150290.1"; havana_transcript "OTTHUMT00000317407.1"; +chr22 HAVANA transcript 50628893 50629026 . + . gene_id "ENSG00000170638.5"; transcript_id "ENST00000395827.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TRABD"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TRABD-004"; level 2; tag "basic"; tag "appris_candidate"; tag "CCDS"; ccdsid "CCDS14086.1"; havana_gene "OTTHUMG00000044644.3"; havana_transcript "OTTHUMT00000316989.1"; +chr22 HAVANA transcript 50633441 50633741 . + . gene_id "ENSG00000170638.5"; transcript_id "ENST00000472677.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TRABD"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "TRABD-006"; level 2; havana_gene "OTTHUMG00000044644.3"; havana_transcript "OTTHUMT00000316991.1"; +chr22 HAVANA transcript 50682994 50683060 . - . gene_id "ENSG00000128159.7"; transcript_id "ENST00000248846.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TUBGCP6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TUBGCP6-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS14087.1"; havana_gene "OTTHUMG00000030150.5"; havana_transcript "OTTHUMT00000075004.3"; +chr22 HAVANA transcript 50765490 50765861 . - . gene_id "ENSG00000205593.7"; transcript_id "ENST00000413817.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "DENND6B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "DENND6B-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS46732.1"; havana_gene "OTTHUMG00000150210.5"; havana_transcript "OTTHUMT00000316845.3"; +chr22 HAVANA transcript 50765482 50765861 . - . gene_id "ENSG00000205593.7"; transcript_id "ENST00000495607.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "DENND6B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "DENND6B-002"; level 2; havana_gene "OTTHUMG00000150210.5"; havana_transcript "OTTHUMT00000316854.1"; +chr22 HAVANA transcript 50780772 50781048 . + . gene_id "ENSG00000100239.11"; transcript_id "ENST00000359139.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PPP6R2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PPP6R2-001"; level 2; tag "basic"; tag "appris_candidate"; tag "CCDS"; ccdsid "CCDS56236.1"; havana_gene "OTTHUMG00000150199.3"; havana_transcript "OTTHUMT00000316806.1"; +chr22 HAVANA transcript 50781271 50781547 . + . gene_id "ENSG00000100239.11"; transcript_id "ENST00000359139.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PPP6R2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PPP6R2-001"; level 2; tag "basic"; tag "appris_candidate"; tag "CCDS"; ccdsid "CCDS56236.1"; havana_gene "OTTHUMG00000150199.3"; havana_transcript "OTTHUMT00000316806.1"; +chr22 HAVANA transcript 50780772 50781048 . + . gene_id "ENSG00000100239.11"; transcript_id "ENST00000395741.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PPP6R2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PPP6R2-002"; level 2; tag "basic"; tag "appris_candidate"; tag "CCDS"; ccdsid "CCDS56235.1"; havana_gene "OTTHUMG00000150199.3"; havana_transcript "OTTHUMT00000316807.1"; +chr22 HAVANA transcript 50781271 50781547 . + . gene_id "ENSG00000100239.11"; transcript_id "ENST00000395741.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PPP6R2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PPP6R2-002"; level 2; tag "basic"; tag "appris_candidate"; tag "CCDS"; ccdsid "CCDS56235.1"; havana_gene "OTTHUMG00000150199.3"; havana_transcript "OTTHUMT00000316807.1"; +chr22 HAVANA transcript 50780772 50781048 . + . gene_id "ENSG00000100239.11"; transcript_id "ENST00000395744.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PPP6R2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PPP6R2-003"; level 2; tag "basic"; tag "appris_candidate"; tag "CCDS"; ccdsid "CCDS33681.1"; havana_gene "OTTHUMG00000150199.3"; havana_transcript "OTTHUMT00000316808.1"; +chr22 HAVANA transcript 50781271 50781547 . + . gene_id "ENSG00000100239.11"; transcript_id "ENST00000395744.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PPP6R2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PPP6R2-003"; level 2; tag "basic"; tag "appris_candidate"; tag "CCDS"; ccdsid "CCDS33681.1"; havana_gene "OTTHUMG00000150199.3"; havana_transcript "OTTHUMT00000316808.1"; +chr22 ENSEMBL transcript 50946136 50946219 . - . gene_id "ENSG00000100258.13"; transcript_id "ENST00000380796.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "LMF2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "LMF2-201"; level 3; tag "basic"; havana_gene "OTTHUMG00000150206.2"; +chr22 ENSEMBL transcript 50946517 50946813 . - . gene_id "ENSG00000100258.13"; transcript_id "ENST00000380796.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "LMF2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "LMF2-201"; level 3; tag "basic"; havana_gene "OTTHUMG00000150206.2"; +chr22 HAVANA transcript 50946121 50946219 . - . gene_id "ENSG00000100258.13"; transcript_id "ENST00000474879.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "LMF2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "LMF2-002"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS14093.2"; havana_gene "OTTHUMG00000150206.2"; havana_transcript "OTTHUMT00000316833.2"; +chr22 HAVANA transcript 50946517 50946813 . - . gene_id "ENSG00000100258.13"; transcript_id "ENST00000474879.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "LMF2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "LMF2-002"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS14093.2"; havana_gene "OTTHUMG00000150206.2"; havana_transcript "OTTHUMT00000316833.2"; +chr22 HAVANA transcript 50946114 50946219 . - . gene_id "ENSG00000100258.13"; transcript_id "ENST00000216080.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "LMF2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "LMF2-001"; level 2; tag "basic"; havana_gene "OTTHUMG00000150206.2"; havana_transcript "OTTHUMT00000316832.2"; +chr22 HAVANA transcript 50946517 50946813 . - . gene_id "ENSG00000100258.13"; transcript_id "ENST00000216080.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "LMF2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "LMF2-001"; level 2; tag "basic"; havana_gene "OTTHUMG00000150206.2"; havana_transcript "OTTHUMT00000316832.2"; +chr22 HAVANA transcript 50945943 50946219 . - . gene_id "ENSG00000100258.13"; transcript_id "ENST00000514938.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "LMF2"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "LMF2-006"; level 2; havana_gene "OTTHUMG00000150206.2"; havana_transcript "OTTHUMT00000361667.1"; +chr22 HAVANA transcript 50946517 50946649 . - . gene_id "ENSG00000100258.13"; transcript_id "ENST00000514938.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "LMF2"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "LMF2-006"; level 2; havana_gene "OTTHUMG00000150206.2"; havana_transcript "OTTHUMT00000361667.1"; +chr22 HAVANA transcript 50945943 50946219 . - . gene_id "ENSG00000100258.13"; transcript_id "ENST00000505981.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "LMF2"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "LMF2-005"; level 2; tag "basic"; havana_gene "OTTHUMG00000150206.2"; havana_transcript "OTTHUMT00000361666.1"; +chr22 HAVANA transcript 50946517 50946813 . - . gene_id "ENSG00000100258.13"; transcript_id "ENST00000505981.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "LMF2"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "LMF2-005"; level 2; tag "basic"; havana_gene "OTTHUMG00000150206.2"; havana_transcript "OTTHUMT00000361666.1"; +chr22 HAVANA transcript 50945943 50946219 . - . gene_id "ENSG00000100258.13"; transcript_id "ENST00000507607.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "LMF2"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "LMF2-004"; level 2; havana_gene "OTTHUMG00000150206.2"; havana_transcript "OTTHUMT00000361665.1"; +chr22 HAVANA transcript 50946517 50946813 . - . gene_id "ENSG00000100258.13"; transcript_id "ENST00000507607.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "LMF2"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "LMF2-004"; level 2; havana_gene "OTTHUMG00000150206.2"; havana_transcript "OTTHUMT00000361665.1"; +chr22 HAVANA transcript 50945943 50946219 . + . gene_id "ENSG00000025770.14"; transcript_id "ENST00000420993.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NCAPH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NCAPH2-001"; level 2; tag "basic"; tag "appris_candidate"; tag "CCDS"; ccdsid "CCDS14094.2"; havana_gene "OTTHUMG00000150205.5"; havana_transcript "OTTHUMT00000317012.1"; +chr22 HAVANA transcript 50946517 50946644 . + . gene_id "ENSG00000025770.14"; transcript_id "ENST00000420993.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NCAPH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NCAPH2-001"; level 2; tag "basic"; tag "appris_candidate"; tag "CCDS"; ccdsid "CCDS14094.2"; havana_gene "OTTHUMG00000150205.5"; havana_transcript "OTTHUMT00000317012.1"; +chr22 HAVANA transcript 50945943 50946219 . + . gene_id "ENSG00000025770.14"; transcript_id "ENST00000395698.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NCAPH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NCAPH2-003"; level 2; tag "basic"; tag "CCDS"; ccdsid "CCDS43038.1"; havana_gene "OTTHUMG00000150205.5"; havana_transcript "OTTHUMT00000316829.1"; +chr22 HAVANA transcript 50946517 50946671 . + . gene_id "ENSG00000025770.14"; transcript_id "ENST00000395698.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NCAPH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NCAPH2-003"; level 2; tag "basic"; tag "CCDS"; ccdsid "CCDS43038.1"; havana_gene "OTTHUMG00000150205.5"; havana_transcript "OTTHUMT00000316829.1"; +chr22 HAVANA transcript 50945943 50946219 . + . gene_id "ENSG00000025770.14"; transcript_id "ENST00000395701.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NCAPH2"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "NCAPH2-006"; level 2; tag "basic"; havana_gene "OTTHUMG00000150205.5"; havana_transcript "OTTHUMT00000317014.1"; +chr22 HAVANA transcript 50946517 50946672 . + . gene_id "ENSG00000025770.14"; transcript_id "ENST00000395701.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NCAPH2"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "NCAPH2-006"; level 2; tag "basic"; havana_gene "OTTHUMG00000150205.5"; havana_transcript "OTTHUMT00000317014.1"; +chr22 HAVANA transcript 50945943 50946219 . + . gene_id "ENSG00000025770.14"; transcript_id "ENST00000518394.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NCAPH2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "NCAPH2-013"; level 2; havana_gene "OTTHUMG00000150205.5"; havana_transcript "OTTHUMT00000377494.1"; +chr22 HAVANA transcript 50946517 50946673 . + . gene_id "ENSG00000025770.14"; transcript_id "ENST00000518394.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NCAPH2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "NCAPH2-013"; level 2; havana_gene "OTTHUMG00000150205.5"; havana_transcript "OTTHUMT00000377494.1"; +chr22 HAVANA transcript 50945943 50946219 . + . gene_id "ENSG00000025770.14"; transcript_id "ENST00000523045.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NCAPH2"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "NCAPH2-012"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000150205.5"; havana_transcript "OTTHUMT00000377495.1"; +chr22 HAVANA transcript 50946517 50946674 . + . gene_id "ENSG00000025770.14"; transcript_id "ENST00000523045.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NCAPH2"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "NCAPH2-012"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000150205.5"; havana_transcript "OTTHUMT00000377495.1"; +chr22 HAVANA transcript 50945943 50946219 . + . gene_id "ENSG00000025770.14"; transcript_id "ENST00000418794.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NCAPH2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "NCAPH2-004"; level 2; havana_gene "OTTHUMG00000150205.5"; havana_transcript "OTTHUMT00000317013.1"; +chr22 HAVANA transcript 50946517 50946687 . + . gene_id "ENSG00000025770.14"; transcript_id "ENST00000418794.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NCAPH2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "NCAPH2-004"; level 2; havana_gene "OTTHUMG00000150205.5"; havana_transcript "OTTHUMT00000317013.1"; +chr22 HAVANA transcript 50945943 50946219 . + . gene_id "ENSG00000025770.14"; transcript_id "ENST00000299821.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NCAPH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NCAPH2-009"; level 2; tag "basic"; tag "appris_candidate_longest"; tag "CCDS"; ccdsid "CCDS54546.1"; havana_gene "OTTHUMG00000150205.5"; havana_transcript "OTTHUMT00000317016.1"; +chr22 HAVANA transcript 50946517 50946688 . + . gene_id "ENSG00000025770.14"; transcript_id "ENST00000299821.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NCAPH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NCAPH2-009"; level 2; tag "basic"; tag "appris_candidate_longest"; tag "CCDS"; ccdsid "CCDS54546.1"; havana_gene "OTTHUMG00000150205.5"; havana_transcript "OTTHUMT00000317016.1"; +chr22 HAVANA transcript 50964036 50964210 . - . gene_id "ENSG00000130489.8"; transcript_id "ENST00000395693.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SCO2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SCO2-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS14095.1"; havana_gene "OTTHUMG00000150251.1"; havana_transcript "OTTHUMT00000317090.1"; +chr22 HAVANA transcript 50964569 50964888 . - . gene_id "ENSG00000130489.8"; transcript_id "ENST00000395693.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SCO2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SCO2-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS14095.1"; havana_gene "OTTHUMG00000150251.1"; havana_transcript "OTTHUMT00000317090.1"; +chr22 HAVANA transcript 50964869 50964888 . - . gene_id "ENSG00000130489.8"; transcript_id "ENST00000543927.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SCO2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SCO2-202"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS14095.1"; havana_gene "OTTHUMG00000150251.1"; havana_transcript "OTTHUMT00000317091.1"; +chr22 HAVANA transcript 50964575 50964888 . - . gene_id "ENSG00000130489.8"; transcript_id "ENST00000535425.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SCO2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SCO2-201"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS14095.1"; havana_gene "OTTHUMG00000150251.1"; havana_transcript "OTTHUMT00000317091.1"; +chr22 HAVANA transcript 50964034 50964210 . - . gene_id "ENSG00000130489.8"; transcript_id "ENST00000252785.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SCO2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SCO2-002"; level 2; tag "alternative_5_UTR"; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS14095.1"; havana_gene "OTTHUMG00000150251.1"; havana_transcript "OTTHUMT00000317091.1"; +chr22 HAVANA transcript 50964569 50964888 . - . gene_id "ENSG00000130489.8"; transcript_id "ENST00000252785.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SCO2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SCO2-002"; level 2; tag "alternative_5_UTR"; tag "basic"; tag "appris_principal"; tag "CCDS"; ccdsid "CCDS14095.1"; havana_gene "OTTHUMG00000150251.1"; havana_transcript "OTTHUMT00000317091.1"; +chr22 HAVANA transcript 50964575 50964888 . - . gene_id "ENSG00000130489.8"; transcript_id "ENST00000439934.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SCO2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SCO2-004"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000150251.1"; havana_transcript "OTTHUMT00000317093.1"; +chr22 HAVANA transcript 50964869 50964888 . - . gene_id "ENSG00000130489.8"; transcript_id "ENST00000423348.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SCO2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SCO2-003"; level 2; tag "mRNA_end_NF"; tag "cds_end_NF"; havana_gene "OTTHUMG00000150251.1"; havana_transcript "OTTHUMT00000317092.1"; +chr22 HAVANA transcript 50968488 50968788 . - . gene_id "ENSG00000025708.8"; transcript_id "ENST00000395680.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TYMP"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TYMP-006"; level 2; tag "alternative_5_UTR"; tag "basic"; tag "appris_candidate"; tag "CCDS"; ccdsid "CCDS14096.1"; havana_gene "OTTHUMG00000150249.1"; havana_transcript "OTTHUMT00000317086.1"; +chr22 HAVANA transcript 50969418 50969694 . - . gene_id "ENSG00000025708.8"; transcript_id "ENST00000395680.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TYMP"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TYMP-006"; level 2; tag "alternative_5_UTR"; tag "basic"; tag "appris_candidate"; tag "CCDS"; ccdsid "CCDS14096.1"; havana_gene "OTTHUMG00000150249.1"; havana_transcript "OTTHUMT00000317086.1"; +chr22 HAVANA transcript 50968488 50968788 . - . gene_id "ENSG00000025708.8"; transcript_id "ENST00000395681.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TYMP"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "TYMP-003"; level 2; tag "basic"; tag "appris_candidate_longest"; tag "CCDS"; ccdsid "CCDS58811.1"; havana_gene "OTTHUMG00000150249.1"; havana_transcript "OTTHUMT00000317083.1"; +chr22 HAVANA transcript 50969418 50969694 . - . gene_id "ENSG00000025708.8"; transcript_id "ENST00000395681.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TYMP"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "TYMP-003"; level 2; tag "basic"; tag "appris_candidate_longest"; tag "CCDS"; ccdsid "CCDS58811.1"; havana_gene "OTTHUMG00000150249.1"; havana_transcript "OTTHUMT00000317083.1"; +chr22 HAVANA transcript 50968488 50968788 . - . gene_id "ENSG00000025708.8"; transcript_id "ENST00000252029.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TYMP"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TYMP-001"; level 2; tag "basic"; tag "appris_candidate"; tag "CCDS"; ccdsid "CCDS14096.1"; havana_gene "OTTHUMG00000150249.1"; havana_transcript "OTTHUMT00000317081.1"; +chr22 HAVANA transcript 50969418 50969694 . - . gene_id "ENSG00000025708.8"; transcript_id "ENST00000252029.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TYMP"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TYMP-001"; level 2; tag "basic"; tag "appris_candidate"; tag "CCDS"; ccdsid "CCDS14096.1"; havana_gene "OTTHUMG00000150249.1"; havana_transcript "OTTHUMT00000317081.1"; +chr22 HAVANA transcript 50968488 50968788 . - . gene_id "ENSG00000025708.8"; transcript_id "ENST00000487577.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TYMP"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "TYMP-007"; level 2; havana_gene "OTTHUMG00000150249.1"; havana_transcript "OTTHUMT00000317087.1"; +chr22 HAVANA transcript 50969418 50969694 . - . gene_id "ENSG00000025708.8"; transcript_id "ENST00000487577.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TYMP"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "TYMP-007"; level 2; havana_gene "OTTHUMG00000150249.1"; havana_transcript "OTTHUMT00000317087.1"; +chr22 HAVANA transcript 50968488 50968788 . - . gene_id "ENSG00000025708.8"; transcript_id "ENST00000395678.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TYMP"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TYMP-005"; level 2; tag "alternative_5_UTR"; tag "basic"; tag "appris_candidate"; tag "CCDS"; ccdsid "CCDS14096.1"; havana_gene "OTTHUMG00000150249.1"; havana_transcript "OTTHUMT00000317085.1"; +chr22 HAVANA transcript 50969418 50969694 . - . gene_id "ENSG00000025708.8"; transcript_id "ENST00000395678.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TYMP"; 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transcript 50968488 50968788 . - . gene_id "ENSG00000025708.8"; transcript_id "ENST00000425169.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TYMP"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "TYMP-008"; level 1; tag "mRNA_end_NF"; tag "cds_end_NF"; tag "exp_conf"; havana_gene "OTTHUMG00000150249.1"; havana_transcript "OTTHUMT00000317088.1"; +chr22 HAVANA transcript 50969418 50969694 . - . gene_id "ENSG00000025708.8"; transcript_id "ENST00000425169.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TYMP"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "TYMP-008"; level 1; tag "mRNA_end_NF"; tag "cds_end_NF"; tag "exp_conf"; havana_gene "OTTHUMG00000150249.1"; havana_transcript "OTTHUMT00000317088.1"; +chr22 HAVANA transcript 50968488 50968788 . - . gene_id "ENSG00000025708.8"; transcript_id "ENST00000487162.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TYMP"; transcript_type 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b/weeks/week03/.Rhistory new file mode 100644 index 0000000..6e51c99 --- /dev/null +++ b/weeks/week03/.Rhistory @@ -0,0 +1,18 @@ +lm <-read.table("littermates.txt",head=T) +lm +attach(lm) +names(lm) +mut +mean (mut) +medial (ctl) +median(ctl) +?median +?read +??read +plot(lm) +(q) +()q +[]q +q +quit +q() diff --git a/weeks/week03/R Practice in Class 1_19.ipynb b/weeks/week03/R Practice in Class 1_19.ipynb new file mode 100644 index 0000000..c8f6b2f --- /dev/null +++ b/weeks/week03/R Practice in Class 1_19.ipynb @@ -0,0 +1,1288 @@ +{ + "cells": [ + { + "cell_type": "code", + "execution_count": 1, + "metadata": { + "collapsed": true + }, + "outputs": [], + "source": [ + "lm <-read.table(\"littermates.txt\",head=T)" + ] + }, + { + "cell_type": "code", + "execution_count": 2, + "metadata": { + "collapsed": false + }, + "outputs": [ + { + "data": { + "text/html": [ + "\n", + "\n", + "\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + "\t\n", + 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ujJEwG9ECL6TkXzhPTi6/YCxmV2lT2+s7bsl5kzTOKUNqt/fc6XMvC9mhVK5Duj3rbH72YBnzEctVSJGv9Ki98ET6yxJerIXiqN1Fd+2W8+/7N2w/Pp9vcTw9n/OvChc/0k3ILFyGFLJneS3W9/S9QvYok8uQ4vMm2IOeym8rZUYiuQrpvW1N3/mqe+/vXqGfDn1IV/Dvg/XLq0r4Xfol5wW9xcyhipA6llyiLWeuEbVTaVyG9PhO/eq2ZyTMR6ySbx5wuLfC2bs5l7GTLRlre5h+OvQhLeDXl97kA/6BfiHqbp3OZUjXn9F/Ez69TdheZXEZ0pQv9aufqvICLxeUZCY7fN/6wscOtGcHYxmLO0o/HfqQEnl8bYdx/Df935zfJ2YKrIqQYs79nTH75teF7VUWlyENONWUsYYn7pQyI5Fc3bV7+sdrn/ioQfN1Eo5D0IeUzs87of+b815ipsCqOtgwOX/epG1HGgrbqywuQwpanzH1xcMb7FJmJJKrkGyP7dd+rDKmSHjJT/qQ8i+EVKj/m/MEMVNgVR7+Hrzuu/mNhO1UGtdH7UInJm6c7I+vOeyjKg5/hzaOIJ5IKfqQ9vCalW4pISRF4QFZiehD+rT8rlz3wY4rCMksCEkiopBsFy4e4ImR+i2aZPH79UuEZBaEJBFRSFdeuAjew3+8rWmToak8JUq/JUIyC0KSiCKkqELOz5y/YN1Olh5q+KP0AQCEZBaEJBHJGbJ3HypIuXDBmrz6bfaRpLGRpbdESGZBSBLhNRvUgZAkQkjqQEgSISR1ICSJEJI6EJJECEkdCEkihKQOhCQRQlIHQpIIIQnRbO6WpdcS7es8fwyp6b+3fPg3IVtGSIRkhdQ6+5uJ/y16kGZn5/lhSK1ObZj4VuFoEZtGSIRkhbT8MxtjD+SF0eytnB+GtHS99oUYeUbE6VAIiZCskA4N1xaX8I40eyvnhyEd0J/gX4t3FrBphERIVkjbn9YW8bwZzd7K+WFI343TFnG8hYBNIyRCskIaf6QDi179A83OzvPDkJ452pHVXbVTxKYREiFZIQUv4TnFv1xKs7Pz/DAk+/vaF2KPkKf3IyRC8h5Huuy2q0Ko9lXOD0MS+IVASITwgKy6EBIhhKQuhEQIIakLIRFCSOpCSIQQkroQEiGEpC6ERAghqQshEUJI6kJIhBCSuhASIYSkLoRECCGpCyERQkjqQkiEqEOq3UHmGwH6SUhNr6xZ/Y18h5AI0YYUNKuQ89X1RO7CLb8IqdnXnOdPJthRlSGFTCXYuxOEZJ6nsv5mT/hhtchduOUXISV9Gxt8c94I8TtyFVKs7lIeGyt+9xdDSObZ8Yy26FFyich9uOMPIbXg+rtevfKl+D0VfzbI4ZYKb9ieXf423+J3fzGEZJ5jg7RFfd5O5D7c8YeQ+hSHassH94rfEz+b5XCi7YWPxW1fEMHCJWSEkMz0zf9pi6H55GfGlvOHkOqU3KgtP1omfk8u/0YKnbWrPUIyH21IVxW9+4+Xc58VuQu3/CEkNvPki8NW5F8hfkdVHGzonzoGIZmO+PB3r7X7vx1mE7oLd/wiJPtD3+37mOIF/ao6atf4y1yCvTtBSOrwi5DI4HEkQghJXQiJEEJSF0IihJDUhZAIISR1ISRCCEldCIkQQlIXQiKEkNSFkAghJHUhJEIISV0IiRBCUhdCIoSQ1IWQCCEkdSEkQl6HVOe5D+Z1NX06ggkL6aYF7z4WZtK2TIOQCHkbUuMje9/+/Ny95k9IKFEhvVKwYtHR5HBzNmYahETI25D+920wY4/m+t3/wu4JCqlt8TXar+j0f5qyMfMgJELehvTLaG1Rq6Sz6RMSSlBIw1L05RsEZ497BCER8jak7/X/fhtyIW9rL46gkO7I1JeLF5qyMfMgJELehvRiSksW+s6BIPNnJJKgkBrlPGtjvc4MMmVj5kFIhLwNKXTNmZ1H0y12z07YwYbbs3/fVfSaOdsyD0Ii5P3jSL2fGBRp9mxEE3b4O2bYI+1N2pR5EBIhPCCrLoRECCGpCyERQkjqQkiEEJK6EBIhhKQuhEQIIakLIRFCSOpCSIQQkroQEiGEpC6ERAghqQshEUJI6kJIhBCSuhASoYAIKahZzdIrARFSaGxo6RWERCgQQrrnOOfLo/VrARCSfXohL5xm16+6Cil6+an1HRhLkPAusgjJ4voWPX3p1Ts/19+5NgBCev7PO+Pv+vM5/aqrkJas7jQ2pQFCMl0AhLT8LW3RirdmARHS0X9oi3sdP7PFSzs7VDxT6lRTxqYsQkimC4CQfnhCX565gQVCSFFcP2u5C4/SliW8VMnlF8b/0P4/iUrvjpDMFgAhva+/uk9H3pwFQkgsTf+UHk/Rrx4Z7Dz8dlL/UDbw0EiEZLIACKnj2Tf7j0hbrF8NgJAeyBt//fgzI/WrrkKKXJIdz9ioEwjJZAEQErsqufDYyzX0awEQEht5qPjQ/Y5rrkLS6EddwtoRzqgMQlJHIIR0QRUhyYKQ1IGQJEJI6kBIEiEkdSAkiRCSOhCSRAhJHQhJIoSkDoQkEUJSB0KSCCGpAyFJhJDUgZAkQkjqQEgSISR1ICSJEJI6EJJECInVeurNiQ1JpiOYlyHVefbN8fUETEcwhETISEjNDh9a8WtWR5oJCeVdSPFHD6zY92dbERMSCiERMhLSqvVhzL7wR5oJCeVdSF9+HMKCl24WMSGhEBIhAyHZTt6sLa8oqUMzI5G8Cin4zF+1Zc+iGiJmJBJCImTkN9Lx27RFx+JaJBMSyquQ7HnXa8s+BWEiZiQSQiJkJKTlX9dgwe9upZmQUN7dtftsTRgL/ehrERMSCiERMhJSk9SjX6cdv4JmQkJ5F1LLjIyvD2e2ETEhoRASIUOHvyNGTn+kLsl0BPPy8HfNB6c/dImA6QiGkAjhAVl1ISRCCEldCIkQQlKXv4WU86zCVl0c0k+yZyTSTxeHtEr2jETK8a+QOicr7fXKn+1I2fMRa2Tlz/YN2fMRqxNdJQAAAAAAAAAAAAAAAAAAAAAAAAAAAACgiBavL1DZ/ZU/22vmy56QSPOvrvzZ3i97QkK93pyuEgMG58n+goi0+eIT+w7KnpFIBy8+sW+z7BmJlOdfJ/bhVHN14FRziRCSOhCSRAhJHQhJInchRVx7ncVfERshKSfh1oTSK9YJ6aYjZ/OzhhDOxXwISTE1P+Wn+Kqa+lXLhNQi58Vg25gCS78oNkJSzP9+bcXi97ytX7VMSA/ut2nLLc8RTsZ0CEktQdkDtOVtp/SfTMuENGmTvlw+j24u5kNIaoko7q4tuxdHMAuFdHNuU8bqHL2PcjZmQ0iK2TdVW0zbo1+1TEj2b9Inj9//o+Xeya0ihKSYW8598NgH527Sr1omJFZj4oZN06x9/BshqabPiu3LezuuWSckBSAkdSEkQghJXQiJEEJSF0IihJDUhZAIISR1ISRCCEldMkKaEcPqvpOV9pKLx4QQkjoQkmg8gb2/sWePTdOdhxCSOhCSaDwh6HQrxi5Lcx5CSOpASKLxBNvpOozFZTkPISR1ICTR+MrxWyey8AVrnYcQkjoQkmgDxy/cvIaNORjvPISQ1IGQaEQHufggQlIHQiIRMtXVRxGSOhCSaLG6S3lsrPMQQlIHQhItm5dxHkJI6kBIosVtXxDBwl1khJBUgpCEC521q33lkOrOLX0p8m/zJUyHDEJSl6SDDf1Tx1QKqcmHyxz2l0iZDhGEpC5ZR+0af5nr6sNzi6knQgkhqcvPTqNASOpASESiYp0/hpDUgZCIDHdx3A4hqQMhSYSQ1IGQRLMPTkwvyEgcYnMeQkjqQEiiTU4Z3a1N11H7xzkPISR1ICTRDndyXLRKcR5CSOpASKJltnZcxGQ4DyEkdSAk0ebs6FcvJLpv0mznIYSkDoQkWviENM556qRg5yGEpA6ERCCscbjLjyMkdSAkiRCSOhCSRAhJHQhJIoSkDoQkEUJSB0KSCCGpAyFJhJDUgZAkQkjqQEgSISR1ICSJEJI6EJJECEkdCEkihKQOhCQRQlIHQpIIIakDIUmEkNSBkCRCSOpASBJZKKTo2TuTxoZ6tApCsoCof33//fORHq/mJyFFPPGsQ5JlXkS/1m/Jj43L+MijdRCS/wvZtu/JsQeSXJy97Z6fhNTq+2SHTMuE9OyBGozFF/T2ZB2E5P+GHK/HWP0Td3m6np+EVM46d+2WvKkvdz3iyToIyf/NXK0v173k6XoIyUuz9S948J+3e7IOQvJ/Y3/Ul7se93Q9hOSlnkWjwuv+51g9T9ZBSP4vPm9SZNQLea09XQ8heWv0ac5Tr/ZoFYRkAXcc5/zYbR6vhpC8VrtPF9evKVYlhGQFNXv2iPJ8LYRECCGpCyERQkjqQkiEEJK6EBIhhKQuhEQIIakLIRFCSOpCSIQQkroQEiGEpC6ERAghqQshEUJI6kJIhBCSuhCSqSLvfXFQSJWjCMnawu55cUhVT6+UEdKMGFb3nay0l8Kchywe0mWH074+trt+VcMIydKa/5bxdcahFq4HZYTEE9j7G3v22DTdecjiIX2/IpRdsu2DqoYRkqWt+yqCRXz5uetBOSEFnW6l/fed5jxk7ZBql3TQloOOVTWOkKws+ExfbfnXs67vussJyXa6DmNxWc5D1g4pmrfXlgOybFWMIyQrCz17jba8qtDFXyRMUkgrx2+dyMIXrHUesnZIbPfrNhaydnVVwwjJ0hKXBLGg97a4HpQR0sDxCzevYWMOxjsPWTykXnm7Vhw8FlfVMEKytHan9q3Ym32l60F5h7+jg1x80OIhsWaT3nyqTpWjCMnaYsa9Ob5BFWMyQorfmLMm7rvT65s6D1k9JPcQkrpkhPTVsu6zc+d3XLzKeQghqQMhiZYby5rzBqx1tvMQQlIHQhLtj67M/ihjV6U4DyEkdSAk0aan6c9p6PXtggsfCr1lkMNnCEkZCEm0oOHvaMu5b9S48KG2x7Iczlrm3Si8gZDUhWd/E0JI6kJIhBCSuiSGFBXr/DGEpA6ERGQ4d/4YQlIHQpIIIakDIYlmH5yYXpCROMTF2QYISR0ISbTJKaO7tek6av845yGEpA6EJNrhTo6LVinOQwhJHQhJtMzSN+iMyXAeQkjqQEiizdnRr15IdN+k2c5DCEkdCEm08AlpnPPUScHOQwhJHQiJQFhj1y+0h5AoxSYnC9w6QpIIIVFK4C4eEzcNQpIIIVFCSOZBSIQQkroQEiHKkLRGun+WdSZ5ILON/D73ZNLN+gfPl+O4wh2EzQAhSYSQzML5rUW8QAvl7ne54/JWdnFIyb9wLvBwA0KSCCGZhfPcJc2DuqfxEj6nYdBfMvg2dnFIuGtnIoREiDakjfqTgodz/j/9nyP5aYaQBEJIhGhDGqRfdOD8Cv2yY+VyEJLZAiakmle6eGFXYrQhXa5faK2Ell0yhMRYrSubiNlwoIT0fD7nX8lOiTakBP2ivBWEpLNNOcv5F41EbDpAQro/d1CNK5K+FbNxw/wnpPaBGdJDOQPDO2z9RsSmAySkr15i+s9NczFbN8p/QropMEPa+KK2uJyL+JUUICHte0BbhBX3FrN1o/whpNInC08NzJAOjdAWEbybgE0HSEgfrdAWfy++RMzWjZIeUjPOr9H/1TCnPKSq3qXTBH4Y0qdLtMWAokgBmw6QkDqcXT5syskZYjZumPSQbMf4wb8ER/VPPVweUhXvP2cGPwypS8HSf0w7NUXEpgMkJNbpk31bHrQL2rhR0kNid3POC0v4wb85/hlVyPkZYTPww5BYl1X7kka5eqtIn/lJSLb2nR2W4gFZk7gOiV297nDBoVdrX3r2rP6vuw8VpAibgT+GJI6fhHRFCeeCn4zsB/ztNAqxEJJEpty1s8e1d30iu2wISYKmV9ak2I2CIbXdwfmx233fjvkQErmYtdqfgWMJdqReSJH7V8U3nFTQ2YTZmA0hkfvi+471h+XfJX5H6oV0Q45+v27Na75PxnQIiVoz3kZbzvxc/J7UC+nBPfpyzkqfN2Q+hEStT3GItnxgr/g9qRdS78IWjAX/8ILvkzEdQqJWp+Q6bbl0mfg9qReSbc2h0UO/yqhvwmzMhpDIzcx65u538q8QvyP1QmKRsw4eWRnn+3bMh5DI2cfuPbZBxJNUL6ZgSP4LIakLIRFCSOpCSIQQkroQEiGEpC6ERAghqQshEUJI6kJIhBCSuhCSeLFD7i59+SKE5Bf+cv9NoaZvFCEJ92D+0cy8Yfo1hOQHwtcWppz5JdbszcoIaUYMq/tOVtpLYc5DCobUsWAEsz1yVj/xGyH5gZkH41mdz01/rVAZIfEE9v7Gnj02TXceUjCkiZv05Q9PMIQkZx4X2TeS6a80G23yZuWEFHS6FWOXpTkPKRjSzNX68pvnGUKSM4+LHNXfpaMpb2XyZuWEZDtdh7G4LOchBUO642QLxtrk9mMISc48LvLpx0GMjTtq9itjSglp5fitE1n4grXOQwqGFLTm+Lw3TjqSQUh+oPXJrTNXFd1q9mZlhDRw/MLNa9gY7Y8+JwqGxIIf/2TlaMeLEiIkf9Bk3vrFXUzfqrzD39GuXvBSxZAuQEjqkhFS9PJT6zvoL/7pPISQ1IGQRFuyutPYlAYICSEpREZIp5oyNmURQkJICpER0h+tGYtK746QEJI6ZIT0dlL/UDbw0MiKITWMc1iMkJSBkESLXJIdz9ioExVCaod3o1AOQiKgP64c1q7CB1riN5JqEJJE+BtJHQiJSFSs88cQkjoQEpHhOGqHkJSBu3aEEJK6ZIRkH5yYXpCROMTFM9kRkjoQkmiTU0Z3a9N11P5xzkMISR0ISbTDnRwXrVKchxCSOhCSaJmtHRcxGc5DCEkdCEm0OTv61QuJ7ps023kIIakDIYkWPiGNc546Kdh5CCGpAyERCGsc7vLjCEkdCEkihKQOhCQRQlIHQpIIIakDIUmEkNSBkCRCSOpASBIhJHUgJIkQkjoQkkQISR0ISSKEpA6EJBFCUgdCkgghqQMhSYSQ1IGQJPI4pOi/NBMyESEQkins7XpEmLQp81g7JPvcIs5X1hE0GdMhJDN0/InzE/easy3zWDuk545ebW/303JBkzEdQjJBzdT364U9XNjHlI2Zx9oh7RmtLXqf879f9K4hJBPcmB2iLT96o9ob0rJ2SNk3a4tmvKWYyZgOIZng/v368rWPTdmYefwkpLZnvXo3ik3/0RYPZZn9Vu+iICQTdDmXwFjYrsmmbMw8fhJS8N/6Onzs2W+kq8+9P/rfBQ8LmpTpEJIZVh6d8Ni2P+qaszHT+ElI5Tw9/H31uv2b7rbKLySEZIqI55N/XRRrzrbMY/GQrAUhqQshEUJI6kJIhBCSuhASIYSkLoRECCGpCyERQkjqQkiEEJK6EBIhhKQuhGRE4yemDg3cOuBoAAAY7ElEQVTxfTMIyRONxkwdFmredARDSAZcl3tgQ9au2j5vByF54Nqc3745scffnglUJYRUPfuRmTZ2yc+v+7whhGScLX1OEKu14//MnJFICKl6CTyGOVfgBYRkXBxvqi0f2GfihITy05BCY/3o3nE7Xk9bPrzb5w0hJCNCY8O0ZWveWFvef8DsWYnilyHZpxfywqlBsidTzn50GmO1cNfOQ96FFPRiAS+aEcxsh7X701G4a+el0pBe+PPO+MHHJ8mezHnX5e5YmYGDDR7yLqQJJwbHD8p8UT/Y8ONHh3GwwZ0ZMazuO1lpL4U5D5WGlDlUWwzPIJ6WG02emTcMh7895F1I6fdpi3uOa4tGT88b7kd38KshIySewN7f2LPHpunOQ46QavJO2rIrj6SemGgIqVrhJT205ZXc91//xOSEFHS6FWOXpTkPlf5GSn9UW4z5nXhapYLueG1SG0HbRkjVOzhWW4z+o6ph24DZky/zaVqCyAnJdroOY3FZzkOlIT2YN+76CWfup56XLjTxxCffFgwVs3GEVL0R+ROvfzZ3dBWjwZ+f/GRj4UgfZyaClJBWjt86kYUvWOs8VHb4e9TvxYfuI55VqXGHG2k/8Ln1hGwcIRkw/GDx7w9UNTgmsxljI/Mb+zQxIWSENHD8ws1r2JiD8c5D0h+QXfeStrCf7i9k4wjJVyvnaAvbidt935LZ5B3+jnb1OJH0kNa8rC3sef2EbBwh+Wr5XG1hyxrg+5bM5pePI0k09rB2t2FMbrSQjSMkX43ObMHYA/mNfN+S2RBSZSEbcjfuwsEGM4gIyb4+b+NPRTjYUCq2nPOQ9JBY0O0vPo3D32YQcmKf7dZ/PYPD32V2VP063/JDEgkhqUtGSLYV86saQkjqQEjCDXUKqdWvBx1OlRBOI2jE+i3zKd85EyExFjl5w8YXo2TMRywpIYU4fSFr3PeAw+IcwmnMyZ71ZNLxpnQ7REgseHPKpAkHt1vnyahG+dlRu8FH6PbVtORa7bfSFsK3fkNIbOCphozVOy7osKhEEkOKinX+GGVIf8/R3w9mQhLdHhESm/KlfnX1LAnzEUtiSMNdHLWjDKlbsf5c/dcJ30MRIbHHHSfsJz8jYT5iBfBdu7ADKxrYB+TfTbdHhMRa5/0rInxCflspMxJJRkj2wYnpBRmJQ1y80x5lSOyKX0rOFPyLcIcIibEBmYWFx++UMR+xZIQ0OWV0tzZdR+0f5zxEGhIL7vCXGMr9ISRNVI+eNSXMRjQZIR3u5LholeI8RBsSNYSkLhkhZbZ2XMS4eHUThKQOhCTanB396oVE902a7TyEkNSBkEQLn5DGOU+dFOw8NDh/mcJ+uDikNNkzEint4pB+kD0jkfLlHP4Oaxzu8uMtZihteOXP9hrZ8xHr6sqf7XDZ8xGruZhSAAAAAAAAAAAAAAAAAAAAAAAAAAAAAEBhnfceVNlFL9U88jfZExLpt4vefWW+7AkJtbcTXSUGDM5+QGFLLj6xL1n2jERKvvjEviWyZyRSduC+rh09nGqurpzlzzo8VkP2TBwQkjoCK6SSzGSH7+Nkz8QBIakjsEIqnit7BpW4C6n7xMnX0s1EhEAIyX7nlH+2dFxDSBK5CWla8dakogWEczFfAIQUsS078df8gfpVhCRR1SF1LbqOsS75f6ecjdkCIKQpB+szNuGU/k5yCEmiqkMam6wvP3uZbi7mC4CQNj6nLWoU9WYISaqqQ3p6m75cM5NuLuYLgJC+naAtwguvYghJqqpD6l54DWOd8m8knIzpAiCkqfuiGRuPu3ayuTnYMLVo/ZqzONjg5yK2Hvv4OxxskM7d4e8e017G4W+/Zx/87wk4/C0dHpBVB0KSCCGpAyFJhJDUgZAkQkjqQEgSISR1ICSJEJI6EJJECEkdCEkihKQOhGQfnJhekJE4xEY/HYSkDoQ0OWV0tzZdR+0fRz8dhKQOhHS49JWFWqXQTkVn9ZCiH5l+f0SVo/4c0l8nT+hm7hYRUmZrx0VMBvFcmOVD6nwi9evMlCZVDftxSP8r3Ly9+AVTN4mQ5uzoVy8kum/SbPrpWDyknxcFs4gNH1U17L8h3ZrXgbH+50x9kUOEFD4hjXOeOimYfjrWDqlOyRXa8o4/qxr335BeXaUvd44xc5sISRPWOJx4IqWsHVI0v1xb3naiqsOd/hvSa5/oyx+eNHObCGlGDKv7TlbaS2H007F2SGzXoiAWbsW7dreduZKxfkW4a+c1VyHxBPb+xp49Nk2nn47FQ+p84pcVv1vzYEP+6s+LXjB1kwiJJwSdbsXYZWn007F4SCz6yXkPWPPw999emYrD3z5wHZLtdB3G4rLop2P1kNzz55DMF2AhfTbI4e9BFz7GV47fOpGFL1hLPx2EpI7AComfzXI40fbCxwaOX7h5DRtzMJ5+OghJHYEVUtXP/o4OqmpEIISkDoQkEUJSB0IqExVLN41yCEkdCKnMcE44jzIISR0ISSKEpA6EhDNkBUFI6sIZsoQQkrpwhiwhhKQunCFLCCGpC2fIEkJI6sIZsoQQkrpwhiwhhKQuPI5ECCGpCyERQkjqQkiEEJK6EJL3wj09GmO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a/weeks/week04/0_alignment_expression_quantification.ipynb b/weeks/week04/0_alignment_expression_quantification.ipynb index 4e241be..284e809 100644 --- a/weeks/week04/0_alignment_expression_quantification.ipynb +++ b/weeks/week04/0_alignment_expression_quantification.ipynb @@ -270,7 +270,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 1, "metadata": { "collapsed": false, "deletable": false, @@ -282,7 +282,18 @@ "solution": false } }, - "outputs": [], + "outputs": [ + { + "data": { + "text/plain": [ + "25" + ] + }, + "execution_count": 1, + "metadata": {}, + "output_type": "execute_result" + } + ], "source": [ "5**2" ] @@ -305,7 +316,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 2, "metadata": { "collapsed": false, "deletable": false, @@ -317,14 +328,25 @@ "solution": false } }, - "outputs": [], + "outputs": [ + { + "data": { + "text/plain": [ + "73" + ] + }, + "execution_count": 2, + "metadata": {}, + "output_type": "execute_result" + } + ], "source": [ "ord('I')" ] }, { "cell_type": "code", - "execution_count": null, + "execution_count": 3, "metadata": { "collapsed": false, "deletable": false, @@ -336,7 +358,18 @@ "solution": false } }, - "outputs": [], + "outputs": [ + { + "data": { + "text/plain": [ + "33" + ] + }, + "execution_count": 3, + "metadata": {}, + "output_type": "execute_result" + } + ], "source": [ "ord('!')" ] @@ -359,7 +392,7 @@ }, { "cell_type": "code", - "execution_count": 3, + "execution_count": 4, "metadata": { "collapsed": false, "deletable": false, @@ -378,7 +411,7 @@ "0.000630957344480193" ] }, - "execution_count": 3, + "execution_count": 4, "metadata": {}, "output_type": "execute_result" } @@ -389,7 +422,7 @@ }, { "cell_type": "code", - "execution_count": 4, + "execution_count": 5, "metadata": { "collapsed": true, "deletable": false, @@ -505,7 +538,7 @@ } }, "source": [ - "YOUR ANSWER HERE" + "According to the gencode website, basic annotation \"identifies a subset of representative transcripts for each gene; prioritises full-length protein coding transcripts over partial or non-protein coding transcripts within the same gene, and intends to highlight those transcripts that will be useful to the majority of users.\" In contrats, the comprhensive annotation basically gives you all the information known about a gene including \"gene annotation on the reference chromosomes, scaffolds, assembly patches and alternate loci (haplotypes).\" The basic annotation is more straightforward but provides less information so I would want to use it if it provides information sufficient for the purpose of my study since it is more streamlined. " ] }, { @@ -857,7 +890,7 @@ } }, "source": [ - "1. -S\n", + "1. -S (though may not be necessary since it's the default)\n", "2. -b\n", "3. -@ 4" ] @@ -968,7 +1001,7 @@ } }, "source": [ - "YOUR ANSWER HERE" + "If I were to use R or other programs I would use the tsv file. The h5 file would be used for kallisto's partner analysis software, sleuth." ] }, { @@ -1114,7 +1147,7 @@ } }, "source": [ - "YOUR ANSWER HERE" + "The featurecounts file was made by summing up all of the transcripts that matched to a given annotation where as the kallisto files gives an estimated abundance for each transcript through their \"pseudoalignment\" approach" ] }, { diff --git a/weeks/week04/2_compare_alignment_vs_quasialignment.ipynb b/weeks/week04/2_compare_alignment_vs_quasialignment.ipynb index 6c9fe1a..94dc8b1 100644 --- a/weeks/week04/2_compare_alignment_vs_quasialignment.ipynb +++ b/weeks/week04/2_compare_alignment_vs_quasialignment.ipynb @@ -41,7 +41,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 6, "metadata": { "collapsed": false, "deletable": false, @@ -53,7 +53,16 @@ "solution": false } }, - "outputs": [], + "outputs": [ + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/home/ucsd-train27/anaconda3/lib/python3.5/site-packages/matplotlib/__init__.py:872: UserWarning: axes.color_cycle is deprecated and replaced with axes.prop_cycle; please use the latter.\n", + " warnings.warn(self.msg_depr % (key, alt_key))\n" + ] + } + ], "source": [ "# We're doing \"import superlongname as abbrev\" for our laziness - this way we don't have to type out the whole thing each time.\n", "\n", @@ -93,7 +102,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 7, "metadata": { "collapsed": false, "deletable": false, @@ -105,7 +114,15 @@ "solution": false } }, - "outputs": [], + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "/oasis/tscc/scratch/ucsd-train27/shalek2013/processed_data\n" + ] + } + ], "source": [ "cd ~/projects/shalek2013/processed_data" ] @@ -128,7 +145,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 8, "metadata": { "collapsed": false, "deletable": false, @@ -140,7 +157,91 @@ "solution": false } }, - "outputs": [], + "outputs": [ + { + "data": { + "text/html": [ + "
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ENSMUST00000195555.1|ENSMUSG00000025902.13|OTTMUSG00000050014.7|OTTMUST00000127249.1|Sox17-005|Sox17|1977|UTR5:1-635|CDS:636-1511|UTR3:1512-1977|19771732.5800.000000.000000
ENSMUST00000192650.5|ENSMUSG00000025902.13|OTTMUSG00000050014.7|OTTMUST00000127247.2|Sox17-004|Sox17|3242|UTR5:1-1851|CDS:1852-2916|UTR3:2917-3242|32422997.5800.000000.000000
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ENSMUST00000045689.13|ENSMUSG00000033845.13|OTTMUSG00000029329.3|OTTMUST00000072661.1|Mrpl15-003|Mrpl15|497|UTR5:1-21|CDS:22-180|UTR3:181-497|497252.8040.000000.000000
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lengtheff_lengthest_countstpm
target_id
ENSMUST00000070533.4|ENSMUSG00000051951.5|OTTMUSG00000026353.2|OTTMUST00000065166.1|Xkr4-001|Xkr4|3634|UTR5:1-150|CDS:151-2094|UTR3:2095-3634|36343395.2420.03967
ENSMUST00000194992.5|ENSMUSG00000025900.10|OTTMUSG00000049985.2|OTTMUST00000127194.1|Rp1-002|Rp1|3047|UTR5:1-54|CDS:55-912|UTR3:913-3047|30472808.2400.00000
ENSMUST00000027032.5|ENSMUSG00000025900.10|OTTMUSG00000049985.2|OTTMUST00000127195.2|Rp1-001|Rp1|6869|UTR5:1-127|CDS:128-6415|UTR3:6416-6869|68696630.2400.00000
ENSMUST00000027035.9|ENSMUSG00000025902.13|OTTMUSG00000050014.7|OTTMUST00000127245.2|Sox17-001|Sox17|3127|UTR5:1-1082|CDS:1083-2342|UTR3:2343-3127|31272888.2400.00000
ENSMUST00000195555.1|ENSMUSG00000025902.13|OTTMUSG00000050014.7|OTTMUST00000127249.1|Sox17-005|Sox17|1977|UTR5:1-635|CDS:636-1511|UTR3:1512-1977|19771738.2400.00000
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" + ], + "text/plain": [ + " length eff_length \\\n", + "target_id \n", + "ENSMUST00000070533.4|ENSMUSG00000051951.5|OTTMU... 3634 3395.24 \n", + "ENSMUST00000194992.5|ENSMUSG00000025900.10|OTTM... 3047 2808.24 \n", + "ENSMUST00000027032.5|ENSMUSG00000025900.10|OTTM... 6869 6630.24 \n", + "ENSMUST00000027035.9|ENSMUSG00000025902.13|OTTM... 3127 2888.24 \n", + "ENSMUST00000195555.1|ENSMUSG00000025902.13|OTTM... 1977 1738.24 \n", + "\n", + " est_counts tpm \n", + "target_id \n", + "ENSMUST00000070533.4|ENSMUSG00000051951.5|OTTMU... 2 0.03967 \n", + "ENSMUST00000194992.5|ENSMUSG00000025900.10|OTTM... 0 0.00000 \n", + "ENSMUST00000027032.5|ENSMUSG00000025900.10|OTTM... 0 0.00000 \n", + "ENSMUST00000027035.9|ENSMUSG00000025902.13|OTTM... 0 0.00000 \n", + "ENSMUST00000195555.1|ENSMUSG00000025902.13|OTTM... 0 0.00000 " + ] + }, + "execution_count": 13, + "metadata": {}, + "output_type": "execute_result" + } + ], "source": [ "s13_kallisto = pd.read_table('S13_kallisto/abundance.tsv', index_col='target_id')\n", "s13_kallisto.head()" @@ -333,7 +805,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 14, "metadata": { "collapsed": false, "deletable": false, @@ -345,14 +817,25 @@ "solution": true } }, - "outputs": [], + "outputs": [ + { + "data": { + "text/plain": [ + "(56504, 4)" + ] + }, + "execution_count": 14, + "metadata": {}, + "output_type": "execute_result" + } + ], "source": [ - "# YOUR CODE HERE" + "s13_kallisto.shape" ] }, { "cell_type": "code", - "execution_count": null, + "execution_count": 15, "metadata": { "collapsed": false, "deletable": false, @@ -390,7 +873,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 16, "metadata": { "collapsed": false, "deletable": false, @@ -403,7 +886,36 @@ }, "scrolled": false }, - "outputs": [], + "outputs": [ + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/home/ucsd-train27/anaconda3/lib/python3.5/site-packages/matplotlib/__init__.py:892: UserWarning: axes.color_cycle is deprecated and replaced with axes.prop_cycle; please use the latter.\n", + " warnings.warn(self.msg_depr % (key, alt_key))\n" + ] + }, + { + "data": { + "text/plain": [ + "" + ] + }, + "execution_count": 16, + "metadata": {}, + "output_type": "execute_result" + }, + { + "data": { + "image/png": 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lengtheff_lengthest_countstpmlog2_tpm1000
target_id
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ENSMUST00000027032.5|ENSMUSG00000025900.10|OTTMUSG00000049985.2|OTTMUST00000127195.2|Rp1-001|Rp1|6869|UTR5:1-127|CDS:128-6415|UTR3:6416-6869|68696624.580013.287712
ENSMUST00000027035.9|ENSMUSG00000025902.13|OTTMUSG00000050014.7|OTTMUST00000127245.2|Sox17-001|Sox17|3127|UTR5:1-1082|CDS:1083-2342|UTR3:2343-3127|31272882.580013.287712
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lengtheff_lengthest_countstpmlog2_tpm1000log2_tpm
target_id
ENSMUST00000070533.4|ENSMUSG00000051951.5|OTTMUSG00000026353.2|OTTMUST00000065166.1|Xkr4-001|Xkr4|3634|UTR5:1-150|CDS:151-2094|UTR3:2095-3634|36343389.580013.2877120
ENSMUST00000194992.5|ENSMUSG00000025900.10|OTTMUSG00000049985.2|OTTMUST00000127194.1|Rp1-002|Rp1|3047|UTR5:1-54|CDS:55-912|UTR3:913-3047|30472802.580013.2877120
ENSMUST00000027032.5|ENSMUSG00000025900.10|OTTMUSG00000049985.2|OTTMUST00000127195.2|Rp1-001|Rp1|6869|UTR5:1-127|CDS:128-6415|UTR3:6416-6869|68696624.580013.2877120
ENSMUST00000027035.9|ENSMUSG00000025902.13|OTTMUSG00000050014.7|OTTMUST00000127245.2|Sox17-001|Sox17|3127|UTR5:1-1082|CDS:1083-2342|UTR3:2343-3127|31272882.580013.2877120
ENSMUST00000195555.1|ENSMUSG00000025902.13|OTTMUSG00000050014.7|OTTMUST00000127249.1|Sox17-005|Sox17|1977|UTR5:1-635|CDS:636-1511|UTR3:1512-1977|19771732.580013.2877120
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lengtheff_lengthest_countstpmlog2_tpm
target_id
ENSMUST00000070533.4|ENSMUSG00000051951.5|OTTMUSG00000026353.2|OTTMUST00000065166.1|Xkr4-001|Xkr4|3634|UTR5:1-150|CDS:151-2094|UTR3:2095-3634|36343395.2420.039670.056126
ENSMUST00000194992.5|ENSMUSG00000025900.10|OTTMUSG00000049985.2|OTTMUST00000127194.1|Rp1-002|Rp1|3047|UTR5:1-54|CDS:55-912|UTR3:913-3047|30472808.2400.000000.000000
ENSMUST00000027032.5|ENSMUSG00000025900.10|OTTMUSG00000049985.2|OTTMUST00000127195.2|Rp1-001|Rp1|6869|UTR5:1-127|CDS:128-6415|UTR3:6416-6869|68696630.2400.000000.000000
ENSMUST00000027035.9|ENSMUSG00000025902.13|OTTMUSG00000050014.7|OTTMUST00000127245.2|Sox17-001|Sox17|3127|UTR5:1-1082|CDS:1083-2342|UTR3:2343-3127|31272888.2400.000000.000000
ENSMUST00000195555.1|ENSMUSG00000025902.13|OTTMUSG00000050014.7|OTTMUST00000127249.1|Sox17-005|Sox17|1977|UTR5:1-635|CDS:636-1511|UTR3:1512-1977|19771738.2400.000000.000000
\n", + "
" + ], + "text/plain": [ + " length eff_length \\\n", + "target_id \n", + "ENSMUST00000070533.4|ENSMUSG00000051951.5|OTTMU... 3634 3395.24 \n", + "ENSMUST00000194992.5|ENSMUSG00000025900.10|OTTM... 3047 2808.24 \n", + "ENSMUST00000027032.5|ENSMUSG00000025900.10|OTTM... 6869 6630.24 \n", + "ENSMUST00000027035.9|ENSMUSG00000025902.13|OTTM... 3127 2888.24 \n", + "ENSMUST00000195555.1|ENSMUSG00000025902.13|OTTM... 1977 1738.24 \n", + "\n", + " est_counts tpm \\\n", + "target_id \n", + "ENSMUST00000070533.4|ENSMUSG00000051951.5|OTTMU... 2 0.03967 \n", + "ENSMUST00000194992.5|ENSMUSG00000025900.10|OTTM... 0 0.00000 \n", + "ENSMUST00000027032.5|ENSMUSG00000025900.10|OTTM... 0 0.00000 \n", + "ENSMUST00000027035.9|ENSMUSG00000025902.13|OTTM... 0 0.00000 \n", + "ENSMUST00000195555.1|ENSMUSG00000025902.13|OTTM... 0 0.00000 \n", + "\n", + " log2_tpm \n", + "target_id \n", + "ENSMUST00000070533.4|ENSMUSG00000051951.5|OTTMU... 0.056126 \n", + "ENSMUST00000194992.5|ENSMUSG00000025900.10|OTTM... 0.000000 \n", + "ENSMUST00000027032.5|ENSMUSG00000025900.10|OTTM... 0.000000 \n", + "ENSMUST00000027035.9|ENSMUSG00000025902.13|OTTM... 0.000000 \n", + "ENSMUST00000195555.1|ENSMUSG00000025902.13|OTTM... 0.000000 " + ] + }, + "execution_count": 19, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "s13_kallisto['log2_tpm'] = np.log2(s13_kallisto['tpm']+1)\n", "s13_kallisto.head()" ] }, { "cell_type": "code", - "execution_count": null, + "execution_count": 20, "metadata": { "collapsed": false, "deletable": false, @@ -529,7 +1357,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 21, "metadata": { "collapsed": false, "deletable": false, @@ -541,14 +1369,43 @@ "solution": true } }, - "outputs": [], + "outputs": [ + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/home/ucsd-train27/anaconda3/lib/python3.5/site-packages/matplotlib/__init__.py:892: UserWarning: axes.color_cycle is deprecated and replaced with axes.prop_cycle; please use the latter.\n", + " warnings.warn(self.msg_depr % (key, alt_key))\n" + ] + }, + { + "data": { + "text/plain": [ + "" + ] + }, + "execution_count": 21, + "metadata": {}, + "output_type": "execute_result" + }, + { + "data": { + "image/png": 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9Fg9V01AwMBGFSLhL9ITz9Zxfa9vuamxcX4LhJmPQX4viD/eYiEIk3Nlp3l4vmAVWnV+r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\nSFMYmIiISFMYmIiISFMYmIiISFMYmIiISFMYmIi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+ "text/plain": [ + "" + ] + }, + "metadata": {}, + "output_type": "display_data" + } + ], "source": [ - "# YOUR CODE HERE" + "sns.jointplot(s10_kallisto['log2_tpm'], s13_kallisto['log2_tpm'])" ] }, { "cell_type": "code", - "execution_count": null, + "execution_count": 22, "metadata": { "collapsed": true, "deletable": false, @@ -584,7 +1441,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 23, "metadata": { "collapsed": false, "deletable": false, @@ -596,7 +1453,36 @@ "solution": false } }, - "outputs": [], + "outputs": [ + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/home/ucsd-train27/anaconda3/lib/python3.5/site-packages/matplotlib/__init__.py:892: UserWarning: axes.color_cycle is deprecated and replaced with axes.prop_cycle; please use the latter.\n", + " warnings.warn(self.msg_depr % (key, alt_key))\n" + ] + }, + { + "data": { + "text/plain": [ + "" + ] + }, + "execution_count": 23, + "metadata": {}, + "output_type": "execute_result" + }, + { + "data": { + "image/png": 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DR++cDVOCwaeade4EWo/Pl15Ng30Ntedx3u+ZPTVXNcC9V17t0HJCS0HJxmjQ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\nWeZjhYfBi5fkBwYmipgT9W24+8mPlEZ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+ "text/plain": [ + "" + ] + }, + "metadata": {}, + "output_type": "display_data" + } + ], "source": [ "from scipy.stats import spearmanr\n", "\n", @@ -621,7 +1507,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 24, "metadata": { "collapsed": false, "deletable": false, @@ -633,7 +1519,69 @@ "solution": false } }, - "outputs": [], + "outputs": [ + { + "data": { + "text/html": [ + "
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s10s13
target_id
ENSMUST00000070533.4|ENSMUSG00000051951.5|OTTMUSG00000026353.2|OTTMUST00000065166.1|Xkr4-001|Xkr4|3634|UTR5:1-150|CDS:151-2094|UTR3:2095-3634|00.056126
ENSMUST00000194992.5|ENSMUSG00000025900.10|OTTMUSG00000049985.2|OTTMUST00000127194.1|Rp1-002|Rp1|3047|UTR5:1-54|CDS:55-912|UTR3:913-3047|00.000000
ENSMUST00000027032.5|ENSMUSG00000025900.10|OTTMUSG00000049985.2|OTTMUST00000127195.2|Rp1-001|Rp1|6869|UTR5:1-127|CDS:128-6415|UTR3:6416-6869|00.000000
ENSMUST00000027035.9|ENSMUSG00000025902.13|OTTMUSG00000050014.7|OTTMUST00000127245.2|Sox17-001|Sox17|3127|UTR5:1-1082|CDS:1083-2342|UTR3:2343-3127|00.000000
ENSMUST00000195555.1|ENSMUSG00000025902.13|OTTMUSG00000050014.7|OTTMUST00000127249.1|Sox17-005|Sox17|1977|UTR5:1-635|CDS:636-1511|UTR3:1512-1977|00.000000
\n", + "
" + ], + "text/plain": [ + " s10 s13\n", + "target_id \n", + "ENSMUST00000070533.4|ENSMUSG00000051951.5|OTTMU... 0 0.056126\n", + "ENSMUST00000194992.5|ENSMUSG00000025900.10|OTTM... 0 0.000000\n", + "ENSMUST00000027032.5|ENSMUSG00000025900.10|OTTM... 0 0.000000\n", + "ENSMUST00000027035.9|ENSMUSG00000025902.13|OTTM... 0 0.000000\n", + "ENSMUST00000195555.1|ENSMUSG00000025902.13|OTTM... 0 0.000000" + ] + }, + "execution_count": 24, + "metadata": {}, + "output_type": "execute_result" + } + ], "source": [ "kallisto_log2_tpm = pd.concat([s10_kallisto['log2_tpm'], s13_kallisto['log2_tpm']], axis=1, keys=['s10', 's13'])\n", "kallisto_log2_tpm.head()" @@ -657,7 +1605,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 25, "metadata": { "collapsed": false, "deletable": false, @@ -669,7 +1617,408 @@ "solution": false } }, - "outputs": [], + "outputs": [ + { + "data": { + "text/html": [ + "
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s10s13
target_id
ENSMUST00000070533.4|ENSMUSG00000051951.5|OTTMUSG00000026353.2|OTTMUST00000065166.1|Xkr4-001|Xkr4|3634|UTR5:1-150|CDS:151-2094|UTR3:2095-3634|FalseFalse
ENSMUST00000194992.5|ENSMUSG00000025900.10|OTTMUSG00000049985.2|OTTMUST00000127194.1|Rp1-002|Rp1|3047|UTR5:1-54|CDS:55-912|UTR3:913-3047|FalseFalse
ENSMUST00000027032.5|ENSMUSG00000025900.10|OTTMUSG00000049985.2|OTTMUST00000127195.2|Rp1-001|Rp1|6869|UTR5:1-127|CDS:128-6415|UTR3:6416-6869|FalseFalse
ENSMUST00000027035.9|ENSMUSG00000025902.13|OTTMUSG00000050014.7|OTTMUST00000127245.2|Sox17-001|Sox17|3127|UTR5:1-1082|CDS:1083-2342|UTR3:2343-3127|FalseFalse
ENSMUST00000195555.1|ENSMUSG00000025902.13|OTTMUSG00000050014.7|OTTMUST00000127249.1|Sox17-005|Sox17|1977|UTR5:1-635|CDS:636-1511|UTR3:1512-1977|FalseFalse
ENSMUST00000192650.5|ENSMUSG00000025902.13|OTTMUSG00000050014.7|OTTMUST00000127247.2|Sox17-004|Sox17|3242|UTR5:1-1851|CDS:1852-2916|UTR3:2917-3242|FalseFalse
ENSMUST00000116652.7|ENSMUSG00000025902.13|OTTMUSG00000050014.7|OTTMUST00000127246.1|Sox17-002|Sox17|1512|UTR5:1-249|CDS:250-1509|UTR3:1510-1512|FalseFalse
ENSMUST00000191647.1|ENSMUSG00000025902.13|OTTMUSG00000050014.7|OTTMUST00000127267.2|Sox17-007|Sox17|406|UTR5:1-83|CDS:84-406|FalseFalse
ENSMUST00000191939.1|ENSMUSG00000025902.13|OTTMUSG00000050014.7|OTTMUST00000127266.2|Sox17-006|Sox17|840|UTR5:1-329|CDS:330-840|FalseFalse
ENSMUST00000192913.1|ENSMUSG00000025902.13|OTTMUSG00000050014.7|OTTMUST00000127248.2|Sox17-003|Sox17|1506|UTR5:1-997|CDS:998-1506|FalseFalse
ENSMUST00000130201.7|ENSMUSG00000033845.13|OTTMUSG00000029329.3|OTTMUST00000072660.1|Mrpl15-002|Mrpl15|1894|UTR5:1-33|CDS:34-648|UTR3:649-1894|FalseFalse
ENSMUST00000156816.6|ENSMUSG00000033845.13|OTTMUSG00000029329.3|OTTMUST00000072659.1|Mrpl15-001|Mrpl15|4203|UTR5:1-62|CDS:63-950|UTR3:951-4203|FalseFalse
ENSMUST00000045689.13|ENSMUSG00000033845.13|OTTMUSG00000029329.3|OTTMUST00000072661.1|Mrpl15-003|Mrpl15|497|UTR5:1-21|CDS:22-180|UTR3:181-497|FalseFalse
ENSMUST00000146665.2|ENSMUSG00000033845.13|OTTMUSG00000029329.3|OTTMUST00000072662.2|Mrpl15-004|Mrpl15|1569|UTR5:1-62|CDS:63-569|UTR3:570-1569|FalseTrue
ENSMUST00000134384.7|ENSMUSG00000025903.14|OTTMUSG00000021562.4|OTTMUST00000051163.2|Lypla1-002|Lypla1|1136|UTR5:1-126|CDS:127-801|UTR3:802-1136|FalseTrue
ENSMUST00000027036.10|ENSMUSG00000025903.14|OTTMUSG00000021562.4|OTTMUST00000051162.1|Lypla1-001|Lypla1|2507|UTR5:1-91|CDS:92-784|UTR3:785-2507|TrueTrue
ENSMUST00000150971.7|ENSMUSG00000025903.14|OTTMUSG00000021562.4|OTTMUST00000051164.3|Lypla1-003|Lypla1|877|UTR5:1-84|CDS:85-750|UTR3:751-877|FalseFalse
ENSMUST00000119612.8|ENSMUSG00000025903.14|OTTMUSG00000021562.4|OTTMUST00000051170.2|Lypla1-009|Lypla1|529|UTR5:1-18|CDS:19-297|UTR3:298-529|FalseFalse
ENSMUST00000137887.7|ENSMUSG00000025903.14|OTTMUSG00000021562.4|OTTMUST00000051168.2|Lypla1-007|Lypla1|444|UTR5:1-16|CDS:17-444|FalseFalse
ENSMUST00000115529.7|ENSMUSG00000025903.14|OTTMUSG00000021562.4|OTTMUST00000051169.1|Lypla1-008|Lypla1|930|UTR5:1-3|CDS:4-594|UTR3:595-930|FalseFalse
ENSMUST00000131119.1|ENSMUSG00000025903.14|OTTMUSG00000021562.4|OTTMUST00000051167.3|Lypla1-006|Lypla1|660|UTR5:1-234|CDS:235-660|FalseFalse
ENSMUST00000155020.1|ENSMUSG00000104217.1|OTTMUSG00000050100.1|OTTMUST00000127419.1|Gm37988-001|Gm37988|825|UTR5:1-22|CDS:23-211|UTR3:212-825|FalseFalse
ENSMUST00000081551.13|ENSMUSG00000033813.15|OTTMUSG00000042348.1|OTTMUST00000111602.1|Tcea1-001|Tcea1|2547|UTR5:1-100|CDS:101-1006|UTR3:1007-2547|TrueTrue
ENSMUST00000165720.2|ENSMUSG00000033813.15|OTTMUSG00000042348.1|OTTMUST00000111603.1|Tcea1-002|Tcea1|2854|UTR5:1-370|CDS:371-1309|UTR3:1310-2854|FalseFalse
ENSMUST00000002533.14|ENSMUSG00000002459.17|OTTMUSG00000029338.4|OTTMUST00000072687.1|Rgs20-002|Rgs20|1778|UTR5:1-160|CDS:161-880|UTR3:881-1778|TrueTrue
ENSMUST00000118000.7|ENSMUSG00000002459.17|OTTMUSG00000029338.4|OTTMUST00000072688.2|Rgs20-001|Rgs20|2125|UTR5:1-108|CDS:109-1227|UTR3:1228-2125|FalseFalse
ENSMUST00000119256.7|ENSMUSG00000002459.17|OTTMUSG00000029338.4|OTTMUST00000072706.2|Rgs20-005|Rgs20|883|UTR5:1-184|CDS:185-811|UTR3:812-883|FalseFalse
ENSMUST00000170566.1|ENSMUSG00000002459.17|OTTMUSG00000029338.4|OTTMUST00000092053.1|Rgs20-007|Rgs20|577|CDS:1-120|UTR3:121-577|FalseFalse
ENSMUST00000147158.1|ENSMUSG00000002459.17|OTTMUSG00000029338.4|OTTMUST00000072705.2|Rgs20-004|Rgs20|707|UTR5:1-105|CDS:106-707|FalseFalse
ENSMUST00000192847.5|ENSMUSG00000033793.12|OTTMUSG00000050145.9|OTTMUST00000127492.1|Atp6v1h-003|Atp6v1h|1662|UTR5:1-161|CDS:162-1487|UTR3:1488-1662|TrueFalse
.........
ENSMUST00000178889.1|ENSMUSG00000095650.2|OTTMUSG00000042966.1|-|Gm20854-201|Gm20854|1002|UTR5:1-175|CDS:176-859|UTR3:860-1002|FalseFalse
ENSMUST00000181549.1|ENSMUSG00000095650.2|OTTMUSG00000042966.1|OTTMUST00000112802.1|Gm20854-001|Gm20854|1156|UTR5:1-335|CDS:336-1019|UTR3:1020-1156|FalseFalse
ENSMUST00000188754.1|ENSMUSG00000100240.1|OTTMUSG00000047031.1|OTTMUST00000121805.1|Gm20820-001|Gm20820|921|UTR5:1-58|CDS:59-727|UTR3:728-921|FalseFalse
ENSMUST00000189543.6|ENSMUSG00000094399.7|OTTMUSG00000047083.1|OTTMUST00000121876.1|Gm21477-001|Gm21477|924|UTR5:1-58|CDS:59-727|UTR3:728-924|FalseFalse
ENSMUST00000179970.1|ENSMUSG00000094399.7|OTTMUSG00000047083.1|-|Gm21477-201|Gm21477|498|CDS:1-498|FalseFalse
ENSMUST00000186493.1|ENSMUSG00000099856.1|OTTMUSG00000047138.1|OTTMUST00000121968.1|Gm20906-001|Gm20906|923|UTR5:1-58|CDS:59-727|UTR3:728-923|FalseFalse
ENSMUST00000187146.1|ENSMUSG00000101915.1|OTTMUSG00000047149.1|OTTMUST00000121980.1|Gm28102-001|Gm28102|924|UTR5:1-58|CDS:59-727|UTR3:728-924|FalseFalse
ENSMUST00000186443.1|ENSMUSG00000102045.1|OTTMUSG00000047309.1|OTTMUST00000122306.1|Gm21294-001|Gm21294|934|UTR5:1-73|CDS:74-742|UTR3:743-934|FalseFalse
ENSMUST00000188269.1|ENSMUSG00000100608.1|OTTMUSG00000047316.1|OTTMUST00000122318.1|Gm21996-001|Gm21996|931|UTR5:1-58|CDS:59-727|UTR3:728-931|FalseFalse
ENSMUST00000190558.6|ENSMUSG00000096178.7|OTTMUSG00000047352.1|OTTMUST00000122361.1|Gm20837-001|Gm20837|844|UTR5:1-73|CDS:74-640|UTR3:641-844|FalseFalse
ENSMUST00000178446.1|ENSMUSG00000096178.7|OTTMUSG00000047352.1|-|Gm20837-201|Gm20837|498|CDS:1-498|FalseFalse
ENSMUST00000177893.1|ENSMUSG00000095366.1|-|-|Gm21860-201|Gm21860|309|CDS:1-309|FalseFalse
ENSMUST00000179483.7|ENSMUSG00000096768.7|-|-|Erdr1-204|Erdr1|688|UTR5:1-70|CDS:71-688|FalseFalse
ENSMUST00000177591.1|ENSMUSG00000096768.7|-|-|Erdr1-201|Erdr1|774|UTR5:1-229|CDS:230-757|UTR3:758-774|FalseFalse
ENSMUST00000177671.7|ENSMUSG00000096768.7|-|-|Erdr1-202|Erdr1|708|UTR5:1-159|CDS:160-528|UTR3:529-708|FalseFalse
ENSMUST00000179077.1|ENSMUSG00000096768.7|-|-|Erdr1-203|Erdr1|887|UTR5:1-74|CDS:75-512|UTR3:513-887|FalseFalse
ENSMUST00000179623.1|ENSMUSG00000096850.1|-|-|Gm21748-201|Gm21748|309|CDS:1-309|FalseFalse
ENSMUST00000082392.1|ENSMUSG00000064341.1|-|-|mt-Nd1-201|mt-Nd1|957|CDS:1-957|TrueTrue
ENSMUST00000082396.1|ENSMUSG00000064345.1|-|-|mt-Nd2-201|mt-Nd2|1038|CDS:1-1038|TrueTrue
ENSMUST00000082402.1|ENSMUSG00000064351.1|-|-|mt-Co1-201|mt-Co1|1545|CDS:1-1545|TrueTrue
ENSMUST00000082405.1|ENSMUSG00000064354.1|-|-|mt-Co2-201|mt-Co2|684|CDS:1-684|TrueTrue
ENSMUST00000082407.1|ENSMUSG00000064356.3|-|-|mt-Atp8-201|mt-Atp8|204|CDS:1-204|TrueTrue
ENSMUST00000082408.1|ENSMUSG00000064357.1|-|-|mt-Atp6-201|mt-Atp6|681|CDS:1-681|TrueTrue
ENSMUST00000082409.1|ENSMUSG00000064358.1|-|-|mt-Co3-201|mt-Co3|784|CDS:1-784|TrueTrue
ENSMUST00000082411.1|ENSMUSG00000064360.1|-|-|mt-Nd3-201|mt-Nd3|348|CDS:1-348|TrueTrue
ENSMUST00000084013.1|ENSMUSG00000065947.3|-|-|mt-Nd4l-201|mt-Nd4l|297|CDS:1-297|TrueTrue
ENSMUST00000082414.1|ENSMUSG00000064363.1|-|-|mt-Nd4-201|mt-Nd4|1378|CDS:1-1378|TrueTrue
ENSMUST00000082418.1|ENSMUSG00000064367.1|-|-|mt-Nd5-201|mt-Nd5|1824|CDS:1-1824|TrueTrue
ENSMUST00000082419.1|ENSMUSG00000064368.1|-|-|mt-Nd6-201|mt-Nd6|519|CDS:1-519|TrueTrue
ENSMUST00000082421.1|ENSMUSG00000064370.1|-|-|mt-Cytb-201|mt-Cytb|1144|CDS:1-1144|TrueTrue
\n", + "

56504 rows × 2 columns

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True True\n", + "ENSMUST00000084013.1|ENSMUSG00000065947.3|-|-|m... True True\n", + "ENSMUST00000082414.1|ENSMUSG00000064363.1|-|-|m... True True\n", + "ENSMUST00000082418.1|ENSMUSG00000064367.1|-|-|m... True True\n", + "ENSMUST00000082419.1|ENSMUSG00000064368.1|-|-|m... True True\n", + "ENSMUST00000082421.1|ENSMUSG00000064370.1|-|-|m... True True\n", + "\n", + "[56504 rows x 2 columns]" + ] + }, + "execution_count": 25, + "metadata": {}, + "output_type": "execute_result" + } + ], "source": [ "kallisto_log2_tpm > 1" ] @@ -692,7 +2041,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 26, "metadata": { "collapsed": false, "deletable": false, @@ -704,7 +2053,20 @@ "solution": false } }, - "outputs": [], + "outputs": [ + { + "data": { + "text/plain": [ + "s10 6121\n", + "s13 6380\n", + "dtype: int64" + ] + }, + "execution_count": 26, + "metadata": {}, + "output_type": "execute_result" + } + ], "source": [ "(kallisto_log2_tpm > 1).sum()" ] @@ -727,7 +2089,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 27, "metadata": { "collapsed": false, "deletable": false, @@ -739,7 +2101,80 @@ "solution": false } }, - "outputs": [], + "outputs": [ + { + "data": { + "text/plain": [ + "target_id\n", + "ENSMUST00000070533.4|ENSMUSG00000051951.5|OTTMUSG00000026353.2|OTTMUST00000065166.1|Xkr4-001|Xkr4|3634|UTR5:1-150|CDS:151-2094|UTR3:2095-3634| 0\n", + "ENSMUST00000194992.5|ENSMUSG00000025900.10|OTTMUSG00000049985.2|OTTMUST00000127194.1|Rp1-002|Rp1|3047|UTR5:1-54|CDS:55-912|UTR3:913-3047| 0\n", + "ENSMUST00000027032.5|ENSMUSG00000025900.10|OTTMUSG00000049985.2|OTTMUST00000127195.2|Rp1-001|Rp1|6869|UTR5:1-127|CDS:128-6415|UTR3:6416-6869| 0\n", + "ENSMUST00000027035.9|ENSMUSG00000025902.13|OTTMUSG00000050014.7|OTTMUST00000127245.2|Sox17-001|Sox17|3127|UTR5:1-1082|CDS:1083-2342|UTR3:2343-3127| 0\n", + "ENSMUST00000195555.1|ENSMUSG00000025902.13|OTTMUSG00000050014.7|OTTMUST00000127249.1|Sox17-005|Sox17|1977|UTR5:1-635|CDS:636-1511|UTR3:1512-1977| 0\n", + "ENSMUST00000192650.5|ENSMUSG00000025902.13|OTTMUSG00000050014.7|OTTMUST00000127247.2|Sox17-004|Sox17|3242|UTR5:1-1851|CDS:1852-2916|UTR3:2917-3242| 0\n", + "ENSMUST00000116652.7|ENSMUSG00000025902.13|OTTMUSG00000050014.7|OTTMUST00000127246.1|Sox17-002|Sox17|1512|UTR5:1-249|CDS:250-1509|UTR3:1510-1512| 0\n", + "ENSMUST00000191647.1|ENSMUSG00000025902.13|OTTMUSG00000050014.7|OTTMUST00000127267.2|Sox17-007|Sox17|406|UTR5:1-83|CDS:84-406| 0\n", + "ENSMUST00000191939.1|ENSMUSG00000025902.13|OTTMUSG00000050014.7|OTTMUST00000127266.2|Sox17-006|Sox17|840|UTR5:1-329|CDS:330-840| 0\n", + "ENSMUST00000192913.1|ENSMUSG00000025902.13|OTTMUSG00000050014.7|OTTMUST00000127248.2|Sox17-003|Sox17|1506|UTR5:1-997|CDS:998-1506| 0\n", + "ENSMUST00000130201.7|ENSMUSG00000033845.13|OTTMUSG00000029329.3|OTTMUST00000072660.1|Mrpl15-002|Mrpl15|1894|UTR5:1-33|CDS:34-648|UTR3:649-1894| 0\n", + "ENSMUST00000156816.6|ENSMUSG00000033845.13|OTTMUSG00000029329.3|OTTMUST00000072659.1|Mrpl15-001|Mrpl15|4203|UTR5:1-62|CDS:63-950|UTR3:951-4203| 0\n", + "ENSMUST00000045689.13|ENSMUSG00000033845.13|OTTMUSG00000029329.3|OTTMUST00000072661.1|Mrpl15-003|Mrpl15|497|UTR5:1-21|CDS:22-180|UTR3:181-497| 0\n", + "ENSMUST00000146665.2|ENSMUSG00000033845.13|OTTMUSG00000029329.3|OTTMUST00000072662.2|Mrpl15-004|Mrpl15|1569|UTR5:1-62|CDS:63-569|UTR3:570-1569| 1\n", + "ENSMUST00000134384.7|ENSMUSG00000025903.14|OTTMUSG00000021562.4|OTTMUST00000051163.2|Lypla1-002|Lypla1|1136|UTR5:1-126|CDS:127-801|UTR3:802-1136| 1\n", + "ENSMUST00000027036.10|ENSMUSG00000025903.14|OTTMUSG00000021562.4|OTTMUST00000051162.1|Lypla1-001|Lypla1|2507|UTR5:1-91|CDS:92-784|UTR3:785-2507| 2\n", + "ENSMUST00000150971.7|ENSMUSG00000025903.14|OTTMUSG00000021562.4|OTTMUST00000051164.3|Lypla1-003|Lypla1|877|UTR5:1-84|CDS:85-750|UTR3:751-877| 0\n", + "ENSMUST00000119612.8|ENSMUSG00000025903.14|OTTMUSG00000021562.4|OTTMUST00000051170.2|Lypla1-009|Lypla1|529|UTR5:1-18|CDS:19-297|UTR3:298-529| 0\n", + "ENSMUST00000137887.7|ENSMUSG00000025903.14|OTTMUSG00000021562.4|OTTMUST00000051168.2|Lypla1-007|Lypla1|444|UTR5:1-16|CDS:17-444| 0\n", + "ENSMUST00000115529.7|ENSMUSG00000025903.14|OTTMUSG00000021562.4|OTTMUST00000051169.1|Lypla1-008|Lypla1|930|UTR5:1-3|CDS:4-594|UTR3:595-930| 0\n", + "ENSMUST00000131119.1|ENSMUSG00000025903.14|OTTMUSG00000021562.4|OTTMUST00000051167.3|Lypla1-006|Lypla1|660|UTR5:1-234|CDS:235-660| 0\n", + "ENSMUST00000155020.1|ENSMUSG00000104217.1|OTTMUSG00000050100.1|OTTMUST00000127419.1|Gm37988-001|Gm37988|825|UTR5:1-22|CDS:23-211|UTR3:212-825| 0\n", + "ENSMUST00000081551.13|ENSMUSG00000033813.15|OTTMUSG00000042348.1|OTTMUST00000111602.1|Tcea1-001|Tcea1|2547|UTR5:1-100|CDS:101-1006|UTR3:1007-2547| 2\n", + "ENSMUST00000165720.2|ENSMUSG00000033813.15|OTTMUSG00000042348.1|OTTMUST00000111603.1|Tcea1-002|Tcea1|2854|UTR5:1-370|CDS:371-1309|UTR3:1310-2854| 0\n", + "ENSMUST00000002533.14|ENSMUSG00000002459.17|OTTMUSG00000029338.4|OTTMUST00000072687.1|Rgs20-002|Rgs20|1778|UTR5:1-160|CDS:161-880|UTR3:881-1778| 2\n", + "ENSMUST00000118000.7|ENSMUSG00000002459.17|OTTMUSG00000029338.4|OTTMUST00000072688.2|Rgs20-001|Rgs20|2125|UTR5:1-108|CDS:109-1227|UTR3:1228-2125| 0\n", + "ENSMUST00000119256.7|ENSMUSG00000002459.17|OTTMUSG00000029338.4|OTTMUST00000072706.2|Rgs20-005|Rgs20|883|UTR5:1-184|CDS:185-811|UTR3:812-883| 0\n", + "ENSMUST00000170566.1|ENSMUSG00000002459.17|OTTMUSG00000029338.4|OTTMUST00000092053.1|Rgs20-007|Rgs20|577|CDS:1-120|UTR3:121-577| 0\n", + "ENSMUST00000147158.1|ENSMUSG00000002459.17|OTTMUSG00000029338.4|OTTMUST00000072705.2|Rgs20-004|Rgs20|707|UTR5:1-105|CDS:106-707| 0\n", + "ENSMUST00000192847.5|ENSMUSG00000033793.12|OTTMUSG00000050145.9|OTTMUST00000127492.1|Atp6v1h-003|Atp6v1h|1662|UTR5:1-161|CDS:162-1487|UTR3:1488-1662| 1\n", + " ..\n", + "ENSMUST00000178889.1|ENSMUSG00000095650.2|OTTMUSG00000042966.1|-|Gm20854-201|Gm20854|1002|UTR5:1-175|CDS:176-859|UTR3:860-1002| 0\n", + "ENSMUST00000181549.1|ENSMUSG00000095650.2|OTTMUSG00000042966.1|OTTMUST00000112802.1|Gm20854-001|Gm20854|1156|UTR5:1-335|CDS:336-1019|UTR3:1020-1156| 0\n", + "ENSMUST00000188754.1|ENSMUSG00000100240.1|OTTMUSG00000047031.1|OTTMUST00000121805.1|Gm20820-001|Gm20820|921|UTR5:1-58|CDS:59-727|UTR3:728-921| 0\n", + "ENSMUST00000189543.6|ENSMUSG00000094399.7|OTTMUSG00000047083.1|OTTMUST00000121876.1|Gm21477-001|Gm21477|924|UTR5:1-58|CDS:59-727|UTR3:728-924| 0\n", + "ENSMUST00000179970.1|ENSMUSG00000094399.7|OTTMUSG00000047083.1|-|Gm21477-201|Gm21477|498|CDS:1-498| 0\n", + "ENSMUST00000186493.1|ENSMUSG00000099856.1|OTTMUSG00000047138.1|OTTMUST00000121968.1|Gm20906-001|Gm20906|923|UTR5:1-58|CDS:59-727|UTR3:728-923| 0\n", + "ENSMUST00000187146.1|ENSMUSG00000101915.1|OTTMUSG00000047149.1|OTTMUST00000121980.1|Gm28102-001|Gm28102|924|UTR5:1-58|CDS:59-727|UTR3:728-924| 0\n", + "ENSMUST00000186443.1|ENSMUSG00000102045.1|OTTMUSG00000047309.1|OTTMUST00000122306.1|Gm21294-001|Gm21294|934|UTR5:1-73|CDS:74-742|UTR3:743-934| 0\n", + "ENSMUST00000188269.1|ENSMUSG00000100608.1|OTTMUSG00000047316.1|OTTMUST00000122318.1|Gm21996-001|Gm21996|931|UTR5:1-58|CDS:59-727|UTR3:728-931| 0\n", + "ENSMUST00000190558.6|ENSMUSG00000096178.7|OTTMUSG00000047352.1|OTTMUST00000122361.1|Gm20837-001|Gm20837|844|UTR5:1-73|CDS:74-640|UTR3:641-844| 0\n", + "ENSMUST00000178446.1|ENSMUSG00000096178.7|OTTMUSG00000047352.1|-|Gm20837-201|Gm20837|498|CDS:1-498| 0\n", + "ENSMUST00000177893.1|ENSMUSG00000095366.1|-|-|Gm21860-201|Gm21860|309|CDS:1-309| 0\n", + "ENSMUST00000179483.7|ENSMUSG00000096768.7|-|-|Erdr1-204|Erdr1|688|UTR5:1-70|CDS:71-688| 0\n", + "ENSMUST00000177591.1|ENSMUSG00000096768.7|-|-|Erdr1-201|Erdr1|774|UTR5:1-229|CDS:230-757|UTR3:758-774| 0\n", + "ENSMUST00000177671.7|ENSMUSG00000096768.7|-|-|Erdr1-202|Erdr1|708|UTR5:1-159|CDS:160-528|UTR3:529-708| 0\n", + "ENSMUST00000179077.1|ENSMUSG00000096768.7|-|-|Erdr1-203|Erdr1|887|UTR5:1-74|CDS:75-512|UTR3:513-887| 0\n", + "ENSMUST00000179623.1|ENSMUSG00000096850.1|-|-|Gm21748-201|Gm21748|309|CDS:1-309| 0\n", + "ENSMUST00000082392.1|ENSMUSG00000064341.1|-|-|mt-Nd1-201|mt-Nd1|957|CDS:1-957| 2\n", + "ENSMUST00000082396.1|ENSMUSG00000064345.1|-|-|mt-Nd2-201|mt-Nd2|1038|CDS:1-1038| 2\n", + "ENSMUST00000082402.1|ENSMUSG00000064351.1|-|-|mt-Co1-201|mt-Co1|1545|CDS:1-1545| 2\n", + "ENSMUST00000082405.1|ENSMUSG00000064354.1|-|-|mt-Co2-201|mt-Co2|684|CDS:1-684| 2\n", + "ENSMUST00000082407.1|ENSMUSG00000064356.3|-|-|mt-Atp8-201|mt-Atp8|204|CDS:1-204| 2\n", + "ENSMUST00000082408.1|ENSMUSG00000064357.1|-|-|mt-Atp6-201|mt-Atp6|681|CDS:1-681| 2\n", + "ENSMUST00000082409.1|ENSMUSG00000064358.1|-|-|mt-Co3-201|mt-Co3|784|CDS:1-784| 2\n", + "ENSMUST00000082411.1|ENSMUSG00000064360.1|-|-|mt-Nd3-201|mt-Nd3|348|CDS:1-348| 2\n", + "ENSMUST00000084013.1|ENSMUSG00000065947.3|-|-|mt-Nd4l-201|mt-Nd4l|297|CDS:1-297| 2\n", + "ENSMUST00000082414.1|ENSMUSG00000064363.1|-|-|mt-Nd4-201|mt-Nd4|1378|CDS:1-1378| 2\n", + "ENSMUST00000082418.1|ENSMUSG00000064367.1|-|-|mt-Nd5-201|mt-Nd5|1824|CDS:1-1824| 2\n", + "ENSMUST00000082419.1|ENSMUSG00000064368.1|-|-|mt-Nd6-201|mt-Nd6|519|CDS:1-519| 2\n", + "ENSMUST00000082421.1|ENSMUSG00000064370.1|-|-|mt-Cytb-201|mt-Cytb|1144|CDS:1-1144| 2\n", + "dtype: int64" + ] + }, + "execution_count": 27, + "metadata": {}, + "output_type": "execute_result" + } + ], "source": [ "(kallisto_log2_tpm > 1).sum(axis=1)" ] @@ -762,7 +2197,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 28, "metadata": { "collapsed": false, "deletable": false, @@ -774,7 +2209,80 @@ "solution": false } }, - "outputs": [], + "outputs": [ + { + "data": { + "text/plain": [ + "target_id\n", + "ENSMUST00000070533.4|ENSMUSG00000051951.5|OTTMUSG00000026353.2|OTTMUST00000065166.1|Xkr4-001|Xkr4|3634|UTR5:1-150|CDS:151-2094|UTR3:2095-3634| False\n", + "ENSMUST00000194992.5|ENSMUSG00000025900.10|OTTMUSG00000049985.2|OTTMUST00000127194.1|Rp1-002|Rp1|3047|UTR5:1-54|CDS:55-912|UTR3:913-3047| False\n", + "ENSMUST00000027032.5|ENSMUSG00000025900.10|OTTMUSG00000049985.2|OTTMUST00000127195.2|Rp1-001|Rp1|6869|UTR5:1-127|CDS:128-6415|UTR3:6416-6869| False\n", + "ENSMUST00000027035.9|ENSMUSG00000025902.13|OTTMUSG00000050014.7|OTTMUST00000127245.2|Sox17-001|Sox17|3127|UTR5:1-1082|CDS:1083-2342|UTR3:2343-3127| False\n", + "ENSMUST00000195555.1|ENSMUSG00000025902.13|OTTMUSG00000050014.7|OTTMUST00000127249.1|Sox17-005|Sox17|1977|UTR5:1-635|CDS:636-1511|UTR3:1512-1977| False\n", + "ENSMUST00000192650.5|ENSMUSG00000025902.13|OTTMUSG00000050014.7|OTTMUST00000127247.2|Sox17-004|Sox17|3242|UTR5:1-1851|CDS:1852-2916|UTR3:2917-3242| False\n", + "ENSMUST00000116652.7|ENSMUSG00000025902.13|OTTMUSG00000050014.7|OTTMUST00000127246.1|Sox17-002|Sox17|1512|UTR5:1-249|CDS:250-1509|UTR3:1510-1512| False\n", + "ENSMUST00000191647.1|ENSMUSG00000025902.13|OTTMUSG00000050014.7|OTTMUST00000127267.2|Sox17-007|Sox17|406|UTR5:1-83|CDS:84-406| False\n", + "ENSMUST00000191939.1|ENSMUSG00000025902.13|OTTMUSG00000050014.7|OTTMUST00000127266.2|Sox17-006|Sox17|840|UTR5:1-329|CDS:330-840| False\n", + "ENSMUST00000192913.1|ENSMUSG00000025902.13|OTTMUSG00000050014.7|OTTMUST00000127248.2|Sox17-003|Sox17|1506|UTR5:1-997|CDS:998-1506| False\n", + "ENSMUST00000130201.7|ENSMUSG00000033845.13|OTTMUSG00000029329.3|OTTMUST00000072660.1|Mrpl15-002|Mrpl15|1894|UTR5:1-33|CDS:34-648|UTR3:649-1894| False\n", + "ENSMUST00000156816.6|ENSMUSG00000033845.13|OTTMUSG00000029329.3|OTTMUST00000072659.1|Mrpl15-001|Mrpl15|4203|UTR5:1-62|CDS:63-950|UTR3:951-4203| False\n", + "ENSMUST00000045689.13|ENSMUSG00000033845.13|OTTMUSG00000029329.3|OTTMUST00000072661.1|Mrpl15-003|Mrpl15|497|UTR5:1-21|CDS:22-180|UTR3:181-497| False\n", + "ENSMUST00000146665.2|ENSMUSG00000033845.13|OTTMUSG00000029329.3|OTTMUST00000072662.2|Mrpl15-004|Mrpl15|1569|UTR5:1-62|CDS:63-569|UTR3:570-1569| True\n", + "ENSMUST00000134384.7|ENSMUSG00000025903.14|OTTMUSG00000021562.4|OTTMUST00000051163.2|Lypla1-002|Lypla1|1136|UTR5:1-126|CDS:127-801|UTR3:802-1136| True\n", + "ENSMUST00000027036.10|ENSMUSG00000025903.14|OTTMUSG00000021562.4|OTTMUST00000051162.1|Lypla1-001|Lypla1|2507|UTR5:1-91|CDS:92-784|UTR3:785-2507| True\n", + "ENSMUST00000150971.7|ENSMUSG00000025903.14|OTTMUSG00000021562.4|OTTMUST00000051164.3|Lypla1-003|Lypla1|877|UTR5:1-84|CDS:85-750|UTR3:751-877| False\n", + "ENSMUST00000119612.8|ENSMUSG00000025903.14|OTTMUSG00000021562.4|OTTMUST00000051170.2|Lypla1-009|Lypla1|529|UTR5:1-18|CDS:19-297|UTR3:298-529| False\n", + "ENSMUST00000137887.7|ENSMUSG00000025903.14|OTTMUSG00000021562.4|OTTMUST00000051168.2|Lypla1-007|Lypla1|444|UTR5:1-16|CDS:17-444| False\n", + "ENSMUST00000115529.7|ENSMUSG00000025903.14|OTTMUSG00000021562.4|OTTMUST00000051169.1|Lypla1-008|Lypla1|930|UTR5:1-3|CDS:4-594|UTR3:595-930| False\n", + "ENSMUST00000131119.1|ENSMUSG00000025903.14|OTTMUSG00000021562.4|OTTMUST00000051167.3|Lypla1-006|Lypla1|660|UTR5:1-234|CDS:235-660| False\n", + "ENSMUST00000155020.1|ENSMUSG00000104217.1|OTTMUSG00000050100.1|OTTMUST00000127419.1|Gm37988-001|Gm37988|825|UTR5:1-22|CDS:23-211|UTR3:212-825| False\n", + "ENSMUST00000081551.13|ENSMUSG00000033813.15|OTTMUSG00000042348.1|OTTMUST00000111602.1|Tcea1-001|Tcea1|2547|UTR5:1-100|CDS:101-1006|UTR3:1007-2547| True\n", + "ENSMUST00000165720.2|ENSMUSG00000033813.15|OTTMUSG00000042348.1|OTTMUST00000111603.1|Tcea1-002|Tcea1|2854|UTR5:1-370|CDS:371-1309|UTR3:1310-2854| False\n", + "ENSMUST00000002533.14|ENSMUSG00000002459.17|OTTMUSG00000029338.4|OTTMUST00000072687.1|Rgs20-002|Rgs20|1778|UTR5:1-160|CDS:161-880|UTR3:881-1778| True\n", + "ENSMUST00000118000.7|ENSMUSG00000002459.17|OTTMUSG00000029338.4|OTTMUST00000072688.2|Rgs20-001|Rgs20|2125|UTR5:1-108|CDS:109-1227|UTR3:1228-2125| False\n", + "ENSMUST00000119256.7|ENSMUSG00000002459.17|OTTMUSG00000029338.4|OTTMUST00000072706.2|Rgs20-005|Rgs20|883|UTR5:1-184|CDS:185-811|UTR3:812-883| False\n", + "ENSMUST00000170566.1|ENSMUSG00000002459.17|OTTMUSG00000029338.4|OTTMUST00000092053.1|Rgs20-007|Rgs20|577|CDS:1-120|UTR3:121-577| False\n", + "ENSMUST00000147158.1|ENSMUSG00000002459.17|OTTMUSG00000029338.4|OTTMUST00000072705.2|Rgs20-004|Rgs20|707|UTR5:1-105|CDS:106-707| False\n", + "ENSMUST00000192847.5|ENSMUSG00000033793.12|OTTMUSG00000050145.9|OTTMUST00000127492.1|Atp6v1h-003|Atp6v1h|1662|UTR5:1-161|CDS:162-1487|UTR3:1488-1662| True\n", + " ... \n", + "ENSMUST00000178889.1|ENSMUSG00000095650.2|OTTMUSG00000042966.1|-|Gm20854-201|Gm20854|1002|UTR5:1-175|CDS:176-859|UTR3:860-1002| False\n", + "ENSMUST00000181549.1|ENSMUSG00000095650.2|OTTMUSG00000042966.1|OTTMUST00000112802.1|Gm20854-001|Gm20854|1156|UTR5:1-335|CDS:336-1019|UTR3:1020-1156| False\n", + "ENSMUST00000188754.1|ENSMUSG00000100240.1|OTTMUSG00000047031.1|OTTMUST00000121805.1|Gm20820-001|Gm20820|921|UTR5:1-58|CDS:59-727|UTR3:728-921| False\n", + "ENSMUST00000189543.6|ENSMUSG00000094399.7|OTTMUSG00000047083.1|OTTMUST00000121876.1|Gm21477-001|Gm21477|924|UTR5:1-58|CDS:59-727|UTR3:728-924| False\n", + "ENSMUST00000179970.1|ENSMUSG00000094399.7|OTTMUSG00000047083.1|-|Gm21477-201|Gm21477|498|CDS:1-498| False\n", + "ENSMUST00000186493.1|ENSMUSG00000099856.1|OTTMUSG00000047138.1|OTTMUST00000121968.1|Gm20906-001|Gm20906|923|UTR5:1-58|CDS:59-727|UTR3:728-923| False\n", + "ENSMUST00000187146.1|ENSMUSG00000101915.1|OTTMUSG00000047149.1|OTTMUST00000121980.1|Gm28102-001|Gm28102|924|UTR5:1-58|CDS:59-727|UTR3:728-924| False\n", + "ENSMUST00000186443.1|ENSMUSG00000102045.1|OTTMUSG00000047309.1|OTTMUST00000122306.1|Gm21294-001|Gm21294|934|UTR5:1-73|CDS:74-742|UTR3:743-934| False\n", + "ENSMUST00000188269.1|ENSMUSG00000100608.1|OTTMUSG00000047316.1|OTTMUST00000122318.1|Gm21996-001|Gm21996|931|UTR5:1-58|CDS:59-727|UTR3:728-931| False\n", + "ENSMUST00000190558.6|ENSMUSG00000096178.7|OTTMUSG00000047352.1|OTTMUST00000122361.1|Gm20837-001|Gm20837|844|UTR5:1-73|CDS:74-640|UTR3:641-844| False\n", + "ENSMUST00000178446.1|ENSMUSG00000096178.7|OTTMUSG00000047352.1|-|Gm20837-201|Gm20837|498|CDS:1-498| False\n", + "ENSMUST00000177893.1|ENSMUSG00000095366.1|-|-|Gm21860-201|Gm21860|309|CDS:1-309| False\n", + "ENSMUST00000179483.7|ENSMUSG00000096768.7|-|-|Erdr1-204|Erdr1|688|UTR5:1-70|CDS:71-688| False\n", + "ENSMUST00000177591.1|ENSMUSG00000096768.7|-|-|Erdr1-201|Erdr1|774|UTR5:1-229|CDS:230-757|UTR3:758-774| False\n", + "ENSMUST00000177671.7|ENSMUSG00000096768.7|-|-|Erdr1-202|Erdr1|708|UTR5:1-159|CDS:160-528|UTR3:529-708| False\n", + "ENSMUST00000179077.1|ENSMUSG00000096768.7|-|-|Erdr1-203|Erdr1|887|UTR5:1-74|CDS:75-512|UTR3:513-887| False\n", + "ENSMUST00000179623.1|ENSMUSG00000096850.1|-|-|Gm21748-201|Gm21748|309|CDS:1-309| False\n", + "ENSMUST00000082392.1|ENSMUSG00000064341.1|-|-|mt-Nd1-201|mt-Nd1|957|CDS:1-957| True\n", + "ENSMUST00000082396.1|ENSMUSG00000064345.1|-|-|mt-Nd2-201|mt-Nd2|1038|CDS:1-1038| True\n", + "ENSMUST00000082402.1|ENSMUSG00000064351.1|-|-|mt-Co1-201|mt-Co1|1545|CDS:1-1545| True\n", + "ENSMUST00000082405.1|ENSMUSG00000064354.1|-|-|mt-Co2-201|mt-Co2|684|CDS:1-684| True\n", + "ENSMUST00000082407.1|ENSMUSG00000064356.3|-|-|mt-Atp8-201|mt-Atp8|204|CDS:1-204| True\n", + "ENSMUST00000082408.1|ENSMUSG00000064357.1|-|-|mt-Atp6-201|mt-Atp6|681|CDS:1-681| True\n", + "ENSMUST00000082409.1|ENSMUSG00000064358.1|-|-|mt-Co3-201|mt-Co3|784|CDS:1-784| True\n", + "ENSMUST00000082411.1|ENSMUSG00000064360.1|-|-|mt-Nd3-201|mt-Nd3|348|CDS:1-348| True\n", + "ENSMUST00000084013.1|ENSMUSG00000065947.3|-|-|mt-Nd4l-201|mt-Nd4l|297|CDS:1-297| True\n", + "ENSMUST00000082414.1|ENSMUSG00000064363.1|-|-|mt-Nd4-201|mt-Nd4|1378|CDS:1-1378| True\n", + "ENSMUST00000082418.1|ENSMUSG00000064367.1|-|-|mt-Nd5-201|mt-Nd5|1824|CDS:1-1824| True\n", + "ENSMUST00000082419.1|ENSMUSG00000064368.1|-|-|mt-Nd6-201|mt-Nd6|519|CDS:1-519| True\n", + "ENSMUST00000082421.1|ENSMUSG00000064370.1|-|-|mt-Cytb-201|mt-Cytb|1144|CDS:1-1144| True\n", + "dtype: bool" + ] + }, + "execution_count": 28, + "metadata": {}, + "output_type": "execute_result" + } + ], "source": [ "(kallisto_log2_tpm > 1).sum(axis=1) >= 1" ] @@ -797,7 +2305,7 @@ }, { "cell_type": "code", - "execution_count": null, + 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s10s13
target_id
ENSMUST00000146665.2|ENSMUSG00000033845.13|OTTMUSG00000029329.3|OTTMUST00000072662.2|Mrpl15-004|Mrpl15|1569|UTR5:1-62|CDS:63-569|UTR3:570-1569|0.0000003.952259
ENSMUST00000134384.7|ENSMUSG00000025903.14|OTTMUSG00000021562.4|OTTMUST00000051163.2|Lypla1-002|Lypla1|1136|UTR5:1-126|CDS:127-801|UTR3:802-1136|0.2786692.769812
ENSMUST00000027036.10|ENSMUSG00000025903.14|OTTMUSG00000021562.4|OTTMUST00000051162.1|Lypla1-001|Lypla1|2507|UTR5:1-91|CDS:92-784|UTR3:785-2507|3.1747842.992448
ENSMUST00000081551.13|ENSMUSG00000033813.15|OTTMUSG00000042348.1|OTTMUST00000111602.1|Tcea1-001|Tcea1|2547|UTR5:1-100|CDS:101-1006|UTR3:1007-2547|6.9473511.058026
ENSMUST00000002533.14|ENSMUSG00000002459.17|OTTMUSG00000029338.4|OTTMUST00000072687.1|Rgs20-002|Rgs20|1778|UTR5:1-160|CDS:161-880|UTR3:881-1778|2.7950654.141637
ENSMUST00000192847.5|ENSMUSG00000033793.12|OTTMUSG00000050145.9|OTTMUST00000127492.1|Atp6v1h-003|Atp6v1h|1662|UTR5:1-161|CDS:162-1487|UTR3:1488-1662|1.7744900.000000
ENSMUST00000159906.7|ENSMUSG00000025907.14|OTTMUSG00000033467.12|OTTMUST00000084214.2|Rb1cc1-009|Rb1cc1|656|UTR5:1-375|CDS:376-656|0.0000007.568701
ENSMUST00000088658.10|ENSMUSG00000025912.16|OTTMUSG00000034736.3|OTTMUST00000088260.1|Mybl1-001|Mybl1|4980|UTR5:1-255|CDS:256-2511|UTR3:2512-4980|0.7755181.389170
ENSMUST00000052843.11|ENSMUSG00000046101.16|OTTMUSG00000021854.3|OTTMUST00000051859.1|Mcmdc2-001|Mcmdc2|2826|UTR5:1-97|CDS:98-1141|UTR3:1142-2826|2.0367280.237117
ENSMUST00000118098.2|ENSMUSG00000046101.16|OTTMUSG00000021854.3|OTTMUST00000078010.2|Mcmdc2-003|Mcmdc2|2072|UTR5:1-405|CDS:406-1482|UTR3:1483-2072|0.2344142.070753
ENSMUST00000183059.1|ENSMUSG00000046101.16|OTTMUSG00000021854.3|OTTMUST00000113822.1|Mcmdc2-005|Mcmdc2|749|CDS:1-77|UTR3:78-749|7.0792718.468359
ENSMUST00000027050.9|ENSMUSG00000025917.9|OTTMUSG00000029459.3|OTTMUST00000072996.2|Cops5-001|Cops5|1698|UTR5:1-315|CDS:316-1320|UTR3:1321-1698|6.7233260.000000
ENSMUST00000186528.6|ENSMUSG00000025917.9|OTTMUSG00000029459.3|OTTMUST00000118982.1|Cops5-006|Cops5|962|UTR5:1-129|CDS:130-276|UTR3:277-962|4.8561290.246389
ENSMUST00000191012.6|ENSMUSG00000056763.16|OTTMUSG00000027401.8|OTTMUST00000118986.2|Cspp1-019|Cspp1|345|UTR5:1-135|CDS:136-345|4.3753310.000000
ENSMUST00000122156.7|ENSMUSG00000056763.16|OTTMUSG00000027401.8|OTTMUST00000067947.1|Cspp1-006|Cspp1|2535|UTR5:1-117|CDS:118-1077|UTR3:1078-2535|3.4666140.000000
ENSMUST00000155974.7|ENSMUSG00000056763.16|OTTMUSG00000027401.8|OTTMUST00000067949.4|Cspp1-008|Cspp1|445|UTR5:1-139|CDS:140-445|3.0358260.000000
ENSMUST00000188449.6|ENSMUSG00000056763.16|OTTMUSG00000027401.8|OTTMUST00000118993.1|Cspp1-024|Cspp1|538|CDS:1-317|UTR3:318-538|6.6190770.000000
ENSMUST00000088615.10|ENSMUSG00000067851.11|OTTMUSG00000033923.2|OTTMUST00000085577.1|Arfgef1-002|Arfgef1|6978|UTR5:1-176|CDS:177-5717|UTR3:5718-6978|6.2235232.219540
ENSMUST00000027056.11|ENSMUSG00000048960.13|OTTMUSG00000047927.1|OTTMUST00000123246.1|Prex2-001|Prex2|11053|UTR5:1-328|CDS:329-5125|UTR3:5126-11053|1.7368470.056283
ENSMUST00000188154.1|ENSMUSG00000048960.13|OTTMUSG00000047927.1|OTTMUST00000123253.1|Prex2-006|Prex2|843|CDS:1-122|UTR3:123-843|1.5475195.895499
ENSMUST00000171690.8|ENSMUSG00000057715.13|OTTMUSG00000033915.2|-|A830018L16Rik-201|A830018L16Rik|6158|UTR5:1-464|CDS:465-1331|UTR3:1332-6158|1.5973932.705801
ENSMUST00000188454.6|ENSMUSG00000025938.16|OTTMUSG00000022327.2|OTTMUST00000053228.2|Slco5a1-001|Slco5a1|8463|UTR5:1-591|CDS:592-3144|UTR3:3145-8463|0.0562843.506221
ENSMUST00000136197.7|ENSMUSG00000025938.16|OTTMUSG00000022327.2|OTTMUST00000053230.2|Slco5a1-003|Slco5a1|5123|UTR5:1-640|CDS:641-2617|UTR3:2618-5123|0.0271346.674800
ENSMUST00000027068.10|ENSMUSG00000025935.10|OTTMUSG00000049113.1|OTTMUST00000125384.1|Tram1-001|Tram1|2938|UTR5:1-188|CDS:189-1313|UTR3:1314-2938|5.4310710.201256
ENSMUST00000027071.6|ENSMUSG00000025937.6|OTTMUSG00000021599.3|OTTMUST00000051280.2|Lactb2-001|Lactb2|4494|UTR5:1-96|CDS:97-963|UTR3:964-4494|3.9405994.778224
ENSMUST00000041447.4|ENSMUSG00000032769.4|OTTMUSG00000049207.1|OTTMUST00000125545.1|Trpa1-001|Trpa1|4263|UTR5:1-27|CDS:28-3405|UTR3:3406-4263|0.0000002.086301
ENSMUST00000188371.6|ENSMUSG00000025925.14|OTTMUSG00000047984.2|OTTMUST00000123359.2|Terf1-001|Terf1|2268|UTR5:1-32|CDS:33-1298|UTR3:1299-2268|0.5358475.333087
ENSMUST00000115367.7|ENSMUSG00000067795.13|OTTMUSG00000022165.2|OTTMUST00000052635.1|4930444P10Rik-003|4930444P10Rik|868|UTR5:1-163|CDS:164-721|UTR3:722-868|3.5914044.592032
ENSMUST00000058437.13|ENSMUSG00000043716.13|OTTMUSG00000016936.3|OTTMUST00000041073.2|Rpl7-001|Rpl7|1163|UTR5:1-284|CDS:285-1097|UTR3:1098-1163|9.5577499.656554
ENSMUST00000149566.1|ENSMUSG00000043716.13|OTTMUSG00000016936.3|OTTMUST00000041075.2|Rpl7-003|Rpl7|838|CDS:1-838|8.0276357.302383
.........
ENSMUST00000112172.3|ENSMUSG00000049775.16|OTTMUSG00000019572.3|OTTMUST00000046738.1|Tmsb4x-001|Tmsb4x|768|UTR5:1-225|CDS:226-360|UTR3:361-768|13.76828814.830347
ENSMUST00000112176.7|ENSMUSG00000049775.16|OTTMUSG00000019572.3|OTTMUST00000046739.2|Tmsb4x-002|Tmsb4x|698|UTR5:1-139|CDS:140-292|UTR3:293-698|4.3587346.675759
ENSMUST00000112175.1|ENSMUSG00000049775.16|OTTMUSG00000019572.3|OTTMUST00000046740.1|Tmsb4x-003|Tmsb4x|864|UTR5:1-502|CDS:503-655|UTR3:656-864|0.6531298.543295
ENSMUST00000112137.1|ENSMUSG00000031358.17|OTTMUSG00000019558.2|OTTMUST00000046702.2|Msl3-002|Msl3|2316|UTR5:1-163|CDS:164-1564|UTR3:1565-2316|0.0943841.071969
ENSMUST00000112129.7|ENSMUSG00000031355.16|OTTMUSG00000019560.4|OTTMUST00000046950.1|Arhgap6-006|Arhgap6|2487|UTR5:1-211|CDS:212-1369|UTR3:1370-2487|2.2175632.394953
ENSMUST00000154638.8|ENSMUSG00000031352.10|OTTMUSG00000019596.2|OTTMUST00000046816.2|Hccs-003|Hccs|3310|UTR5:1-239|CDS:240-521|UTR3:522-3310|0.6934461.291150
ENSMUST00000033717.8|ENSMUSG00000031352.10|OTTMUSG00000019596.2|OTTMUST00000046815.1|Hccs-002|Hccs|2320|UTR5:1-207|CDS:208-1026|UTR3:1027-2320|5.2850360.090573
ENSMUST00000115894.2|ENSMUSG00000069053.11|OTTMUSG00000045273.1|-|Uba1y-201|Uba1y|3981|UTR5:1-102|CDS:103-3279|UTR3:3280-3981|2.2656623.909082
ENSMUST00000189069.6|ENSMUSG00000056673.14|OTTMUSG00000045277.1|OTTMUST00000118912.1|Kdm5d-004|Kdm5d|2177|UTR5:1-178|CDS:179-1609|UTR3:1610-2177|0.0000001.415645
ENSMUST00000055032.13|ENSMUSG00000056673.14|OTTMUSG00000045277.1|OTTMUST00000118913.1|Kdm5d-001|Kdm5d|7974|UTR5:1-176|CDS:177-4823|UTR3:4824-7974|3.0096523.433922
ENSMUST00000186726.6|ENSMUSG00000056673.14|OTTMUSG00000045277.1|OTTMUST00000118916.1|Kdm5d-002|Kdm5d|5916|UTR5:1-128|CDS:129-944|UTR3:945-5916|1.7155682.865436
ENSMUST00000143958.7|ENSMUSG00000068457.14|OTTMUSG00000032814.5|OTTMUST00000081730.2|Uty-002|Uty|2903|UTR5:1-126|CDS:127-363|UTR3:364-2903|1.1691300.000000
ENSMUST00000091190.11|ENSMUSG00000069045.11|OTTMUSG00000045279.1|OTTMUST00000118924.1|Ddx3y-001|Ddx3y|4600|UTR5:1-106|CDS:107-2083|UTR3:2084-4600|0.4201811.121188
ENSMUST00000091178.1|ENSMUSG00000069036.3|OTTMUSG00000045384.2|OTTMUST00000119113.2|Sry-001|Sry|1188|CDS:1-1188|2.3055091.958223
ENSMUST00000190391.1|ENSMUSG00000096706.2|OTTMUSG00000045647.2|OTTMUST00000119534.2|Gm21854-001|Gm21854|1480|UTR5:1-662|CDS:663-1361|UTR3:1362-1480|1.3864470.904086
ENSMUST00000185926.1|ENSMUSG00000096036.2|OTTMUSG00000045661.2|OTTMUST00000119556.2|Gm21778-001|Gm21778|1482|UTR5:1-660|CDS:661-1359|UTR3:1360-1482|3.4110560.000000
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"execution_count": null, + "execution_count": 30, "metadata": { "collapsed": false, "deletable": false, @@ -846,7 +2755,76 @@ "solution": false } }, - "outputs": [], + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "(9383, 2)\n" + ] + }, + { + "data": { + "text/html": [ + "
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" + ], + "text/plain": [ + " s10 s13\n", + "target_id \n", + "ENSMUST00000146665.2|ENSMUSG00000033845.13|OTTM... 0.000000 3.952259\n", + "ENSMUST00000134384.7|ENSMUSG00000025903.14|OTTM... 0.278669 2.769812\n", + "ENSMUST00000027036.10|ENSMUSG00000025903.14|OTT... 3.174784 2.992448\n", + "ENSMUST00000081551.13|ENSMUSG00000033813.15|OTT... 6.947351 1.058026\n", + "ENSMUST00000002533.14|ENSMUSG00000002459.17|OTT... 2.795065 4.141637" + ] + }, + "execution_count": 30, + "metadata": {}, + "output_type": "execute_result" + } + ], "source": [ "kallisto_log2_tpm_expressed = kallisto_log2_tpm.loc[expressed_genes]\n", "print(kallisto_log2_tpm_expressed.shape)\n", @@ -871,7 +2849,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 31, "metadata": { "collapsed": false, "deletable": false, @@ -883,7 +2861,36 @@ "solution": false } }, - "outputs": [], + "outputs": [ + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/home/ucsd-train27/anaconda3/lib/python3.5/site-packages/matplotlib/__init__.py:892: UserWarning: axes.color_cycle is deprecated and replaced with axes.prop_cycle; please use the latter.\n", + " warnings.warn(self.msg_depr % (key, alt_key))\n" + ] + }, + { + "data": { + "text/plain": [ + "" + ] + }, + "execution_count": 31, + "metadata": {}, + "output_type": "execute_result" + }, + { + "data": { + "image/png": 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qytXVunjLK9dys024YZ4Z0Nnxj5210u0j04y4YX4BPtt90i3U7vuf7V4DCQDa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\ne9SmDgMtLQ/2GhKvSYWGvNABcBQ7xCO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+ "text/plain": [ + "" + ] + }, + "metadata": {}, + "output_type": "display_data" + } + ], "source": [ "sns.jointplot('s10', 's13', kallisto_log2_tpm_expressed)" ] @@ -906,7 +2913,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 32, "metadata": { "collapsed": false, "deletable": false, @@ -918,14 +2925,45 @@ "solution": true } }, - "outputs": [], + "outputs": [ + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/home/ucsd-train27/anaconda3/lib/python3.5/site-packages/matplotlib/__init__.py:892: UserWarning: axes.color_cycle is deprecated and replaced with axes.prop_cycle; please use the latter.\n", + " warnings.warn(self.msg_depr % (key, alt_key))\n" + ] + }, + { + "data": { + "text/plain": [ + "" + ] + }, + "execution_count": 32, + "metadata": {}, + "output_type": "execute_result" + }, + { + "data": { + "image/png": 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Rwr7fyJdffqmYkyfyxj46GDhwYLgPJWp99NFHGDp0KObMmePyveuuuw7ff/99GI5KM9xf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\nCqSsjGS8sHIG/lFS6RJK7i4rCzlpLpW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+ "text/plain": [ + "" + ] + }, + "metadata": {}, + "output_type": "display_data" + } + ], "source": [ - "# YOUR CODE HERE" + "from scipy.stats import spearmanr\n", + "\n", + "sns.jointplot('s10', 's13', kallisto_log2_tpm_expressed, stat_func=spearmanr)" ] }, { "cell_type": "code", - "execution_count": null, + "execution_count": 33, "metadata": { "collapsed": false, "deletable": false, @@ -961,7 +2999,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 34, "metadata": { "collapsed": false, "deletable": false, @@ -973,9 +3011,97 @@ "solution": false } }, - "outputs": [], - "source": [ - "s10_featurecounts = pd.read_table('s10_featureCounts.txt')\n", + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "(46984, 1)\n" + ] + }, + { + "data": { + "text/html": [ + "
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# Program:featureCounts v1.5.0; Command:\"featureCounts\" \"-a\" \"/projects/ps-yeolab/biom262-2016/genomes/mm10/gencode/m8/gencode.vM8.basic.annotation.gtf\" \"-o\" \"/home/ucsd-train27/projects/shalek2013/processed_data/S10_featureCounts.txt\" \"-s\" \"-B\" \"--primary\" \"/home/ucsd-train27/projects/shalek2013/processed_data/S10.Aligned.out.sorted.bam\"
GeneidChrStartEndStrandLength/home/ucsd-train27/projects/shalek2013/process...
ENSMUSG00000102693.1chr130732533074322+10700
ENSMUSG00000064842.1chr131020163102125+110980
ENSMUSG00000051951.5chr1;chr1;chr13214482;3421702;36705523216968;3421901;3671498-;-;-36340
ENSMUSG00000102851.1chr132527573253236+4800
\n", + "
" + ], + "text/plain": [ + " # Program:featureCounts v1.5.0; Command:\"featureCounts\" \"-a\" \"/projects/ps-yeolab/biom262-2016/genomes/mm10/gencode/m8/gencode.vM8.basic.annotation.gtf\" \"-o\" \"/home/ucsd-train27/projects/shalek2013/processed_data/S10_featureCounts.txt\" \"-s\" \"-B\" \"--primary\" \"/home/ucsd-train27/projects/shalek2013/processed_data/S10.Aligned.out.sorted.bam\" \n", + "Geneid Chr Start End Strand Length /home/ucsd-train27/projects/shalek2013/process... \n", + "ENSMUSG00000102693.1 chr1 3073253 3074322 + 1070 0 \n", + "ENSMUSG00000064842.1 chr1 3102016 3102125 + 110 980 \n", + "ENSMUSG00000051951.5 chr1;chr1;chr1 3214482;3421702;3670552 3216968;3421901;3671498 -;-;- 3634 0 \n", + "ENSMUSG00000102851.1 chr1 3252757 3253236 + 480 0 " + ] + }, + "execution_count": 34, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "s10_featurecounts = pd.read_table('S10_featureCounts.txt')\n", + "\n", "print(s10_featurecounts.shape)\n", "s10_featurecounts.head()" ] @@ -1001,7 +3127,18 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 35, + "metadata": { + "collapsed": true + }, + "outputs": [], + "source": [ + "? pd.read_table" + ] + }, + { + "cell_type": "code", + "execution_count": 36, "metadata": { "collapsed": false, "deletable": false, @@ -1013,16 +3150,129 @@ "solution": true } }, - "outputs": [], - "source": [ - "# YOUR CODE HERE\n", + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "(46983, 6)\n" + ] + }, + { + "data": { + "text/html": [ + "
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ChrStartEndStrandLength/home/ucsd-train27/projects/shalek2013/processed_data/S10.Aligned.out.sorted.bam
Geneid
ENSMUSG00000102693.1chr130732533074322+10700
ENSMUSG00000064842.1chr131020163102125+110980
ENSMUSG00000051951.5chr1;chr1;chr13214482;3421702;36705523216968;3421901;3671498-;-;-36340
ENSMUSG00000102851.1chr132527573253236+4800
ENSMUSG00000103377.1chr133657313368549-28190
\n", + "
" + ], + "text/plain": [ + " Chr Start \\\n", + "Geneid \n", + "ENSMUSG00000102693.1 chr1 3073253 \n", + "ENSMUSG00000064842.1 chr1 3102016 \n", + "ENSMUSG00000051951.5 chr1;chr1;chr1 3214482;3421702;3670552 \n", + "ENSMUSG00000102851.1 chr1 3252757 \n", + "ENSMUSG00000103377.1 chr1 3365731 \n", + "\n", + " End Strand Length \\\n", + "Geneid \n", + "ENSMUSG00000102693.1 3074322 + 1070 \n", + "ENSMUSG00000064842.1 3102125 + 110 \n", + "ENSMUSG00000051951.5 3216968;3421901;3671498 -;-;- 3634 \n", + "ENSMUSG00000102851.1 3253236 + 480 \n", + "ENSMUSG00000103377.1 3368549 - 2819 \n", + "\n", + " /home/ucsd-train27/projects/shalek2013/processed_data/S10.Aligned.out.sorted.bam \n", + "Geneid \n", + "ENSMUSG00000102693.1 0 \n", + "ENSMUSG00000064842.1 980 \n", + "ENSMUSG00000051951.5 0 \n", + "ENSMUSG00000102851.1 0 \n", + "ENSMUSG00000103377.1 0 " + ] + }, + "execution_count": 36, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "s10_featurecounts = pd.read_table('S10_featureCounts.txt', skiprows=1, index_col='Geneid')\n", "print(s10_featurecounts.shape)\n", "s10_featurecounts.head()" ] }, { "cell_type": "code", - "execution_count": null, + "execution_count": 37, "metadata": { "collapsed": false, "deletable": false, @@ -1065,7 +3315,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 38, "metadata": { "collapsed": false, "deletable": false, @@ -1077,7 +3327,24 @@ "solution": false } }, - "outputs": [], + "outputs": [ + { + "data": { + "text/plain": [ + "Chr object\n", + "Start object\n", + "End object\n", + "Strand object\n", + "Length int64\n", + "/home/ucsd-train27/projects/shalek2013/processed_data/S10.Aligned.out.sorted.bam int64\n", + "dtype: object" + ] + }, + "execution_count": 38, + "metadata": {}, + "output_type": "execute_result" + } + ], "source": [ "s10_featurecounts.dtypes" ] @@ -1100,7 +3367,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 39, "metadata": { "collapsed": false, "deletable": false, @@ -1113,9 +3380,41 @@ }, "scrolled": true }, + "outputs": [ + { + "data": { + "text/plain": [ + "" + ] + }, + "execution_count": 39, + "metadata": {}, + "output_type": "execute_result" + }, + { + "data": { + "image/png": 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+ "text/plain": [ + "" + ] + }, + "metadata": {}, + "output_type": "display_data" + } + ], + "source": [ + "sns.distplot(s10_featurecounts['/home/ucsd-train27/projects/shalek2013/processed_data/S10.Aligned.out.sorted.bam'])" + ] + }, + { + "cell_type": "code", + "execution_count": 40, + "metadata": { + "collapsed": false + }, "outputs": [], "source": [ - "sns.distplot(s10_featurecounts['/home/ucsd-train01/projects/shalek2013/processed_data/S10.Aligned.out.sorted.bam'])" + "? sns.distplot" ] }, { @@ -1136,7 +3435,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 41, "metadata": { "collapsed": false, "deletable": false, @@ -1148,7 +3447,18 @@ "solution": false } }, - "outputs": [], + "outputs": [ + { + "data": { + "text/plain": [ + "90730267" + ] + }, + "execution_count": 41, + "metadata": {}, + "output_type": "execute_result" + } + ], "source": [ "s10_featurecounts['Length'].sum()" ] @@ -1173,7 +3483,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 42, "metadata": { "collapsed": false, "deletable": false, @@ -1185,14 +3495,157 @@ "solution": false } }, - "outputs": [], - "source": [ - "reads = s10_featurecounts['/home/ucsd-train01/projects/shalek2013/processed_data/S10.Aligned.out.sorted.bam']\n", + "outputs": [ + { + "data": { + "text/html": [ + "
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ChrStartEndStrandLength/home/ucsd-train27/projects/shalek2013/processed_data/S10.Aligned.out.sorted.bamnew_column
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ChrStartEndStrandLength/home/ucsd-train27/projects/shalek2013/processed_data/S10.Aligned.out.sorted.bamnew_columnfpkm
Geneid
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ENSMUSG00000103377.1chr133657313368549-281900.000.000000
\n", + "
" + ], + "text/plain": [ + " Chr Start \\\n", + "Geneid \n", + "ENSMUSG00000102693.1 chr1 3073253 \n", + "ENSMUSG00000064842.1 chr1 3102016 \n", + "ENSMUSG00000051951.5 chr1;chr1;chr1 3214482;3421702;3670552 \n", + "ENSMUSG00000102851.1 chr1 3252757 \n", + "ENSMUSG00000103377.1 chr1 3365731 \n", + "\n", + " End Strand Length \\\n", + "Geneid \n", + "ENSMUSG00000102693.1 3074322 + 1070 \n", + "ENSMUSG00000064842.1 3102125 + 110 \n", + "ENSMUSG00000051951.5 3216968;3421901;3671498 -;-;- 3634 \n", + "ENSMUSG00000102851.1 3253236 + 480 \n", + "ENSMUSG00000103377.1 3368549 - 2819 \n", + "\n", + " /home/ucsd-train27/projects/shalek2013/processed_data/S10.Aligned.out.sorted.bam \\\n", + "Geneid \n", + "ENSMUSG00000102693.1 0 \n", + "ENSMUSG00000064842.1 980 \n", + "ENSMUSG00000051951.5 0 \n", + "ENSMUSG00000102851.1 0 \n", + "ENSMUSG00000103377.1 0 \n", + "\n", + " new_column fpkm \n", + "Geneid \n", + "ENSMUSG00000102693.1 0.00 0.000000 \n", + "ENSMUSG00000064842.1 44457830.83 151.953838 \n", + "ENSMUSG00000051951.5 0.00 0.000000 \n", + "ENSMUSG00000102851.1 0.00 0.000000 \n", + "ENSMUSG00000103377.1 0.00 0.000000 " + ] + }, + "execution_count": 44, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "reads = s10_featurecounts['/home/ucsd-train27/projects/shalek2013/processed_data/S10.Aligned.out.sorted.bam']\n", + "\n", + "lengths = s10_featurecounts['Length']\n", + "N=reads.sum()\n", + "s10_featurecounts['fpkm'] = (reads/(lengths*N))*1e9\n", "\n", - "# YOUR CODE HERE\n", "\n", "s10_featurecounts.head()" ] }, { "cell_type": "code", - "execution_count": null, + "execution_count": 45, "metadata": { "collapsed": false, "deletable": false, @@ -1253,7 +3837,13 @@ }, "outputs": [], "source": [ - "assert s10_featurecounts.loc['ENSMUSG00000064842.1', 'fpkm'] == 151.9538381109796" + "assert s10_featurecounts.loc['ENSMUSG00000064842.1', 'fpkm'] == 151.95383811097958\n", + "\n", + "\n", + "#assert s10_featurecounts.loc['ENSMUSG00000064842.1', 'fpkm'] == 151.9538381109796\n", + "\n", + "#The numbers are extrememly close but there is a slight difference in the very last significant figures; \n", + "#but Olga said this is fine/close enough" ] }, { @@ -1274,7 +3864,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 46, "metadata": { "collapsed": false, "deletable": false, @@ -1286,7 +3876,28 @@ "solution": false } }, - "outputs": [], + "outputs": [ + { + "data": { + "text/plain": [ + "" + ] + }, + "execution_count": 46, + "metadata": {}, + "output_type": "execute_result" + }, + { + "data": { + "image/png": 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+ "text/plain": [ + "" + ] + }, + "metadata": {}, + "output_type": "display_data" + } + ], "source": [ "sns.distplot(s10_featurecounts['fpkm'])" ] @@ -1313,7 +3924,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 47, "metadata": { "collapsed": false, "deletable": false, @@ -1325,15 +3936,152 @@ "solution": true } }, - "outputs": [], - "source": [ - "# YOUR CODE HERE\n", + "outputs": [ + { + "data": { + "text/html": [ + "
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ChrStartEndStrandLength/home/ucsd-train27/projects/shalek2013/processed_data/S10.Aligned.out.sorted.bamnew_columnfpkmtpm
Geneid
ENSMUSG00000102693.1chr130732533074322+107000.000.0000000.000000
ENSMUSG00000064842.1chr131020163102125+11098044457830.83151.953838260.827361
ENSMUSG00000051951.5chr1;chr1;chr13214482;3421702;36705523216968;3421901;3671498-;-;-363400.000.0000000.000000
ENSMUSG00000102851.1chr132527573253236+48000.000.0000000.000000
ENSMUSG00000103377.1chr133657313368549-281900.000.0000000.000000
\n", + "
" + ], + "text/plain": [ + " Chr Start \\\n", + "Geneid \n", + "ENSMUSG00000102693.1 chr1 3073253 \n", + "ENSMUSG00000064842.1 chr1 3102016 \n", + "ENSMUSG00000051951.5 chr1;chr1;chr1 3214482;3421702;3670552 \n", + "ENSMUSG00000102851.1 chr1 3252757 \n", + "ENSMUSG00000103377.1 chr1 3365731 \n", + "\n", + " End Strand Length \\\n", + "Geneid \n", + "ENSMUSG00000102693.1 3074322 + 1070 \n", + "ENSMUSG00000064842.1 3102125 + 110 \n", + "ENSMUSG00000051951.5 3216968;3421901;3671498 -;-;- 3634 \n", + "ENSMUSG00000102851.1 3253236 + 480 \n", + "ENSMUSG00000103377.1 3368549 - 2819 \n", + "\n", + " /home/ucsd-train27/projects/shalek2013/processed_data/S10.Aligned.out.sorted.bam \\\n", + "Geneid \n", + "ENSMUSG00000102693.1 0 \n", + "ENSMUSG00000064842.1 980 \n", + "ENSMUSG00000051951.5 0 \n", + "ENSMUSG00000102851.1 0 \n", + "ENSMUSG00000103377.1 0 \n", + "\n", + " new_column fpkm tpm \n", + "Geneid \n", + "ENSMUSG00000102693.1 0.00 0.000000 0.000000 \n", + "ENSMUSG00000064842.1 44457830.83 151.953838 260.827361 \n", + "ENSMUSG00000051951.5 0.00 0.000000 0.000000 \n", + "ENSMUSG00000102851.1 0.00 0.000000 0.000000 \n", + "ENSMUSG00000103377.1 0.00 0.000000 0.000000 " + ] + }, + "execution_count": 47, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "FPKM = s10_featurecounts['fpkm']\n", + "sum = FPKM.sum()\n", + "s10_featurecounts['tpm'] = (FPKM/sum)*10**6\n", "s10_featurecounts.head()" ] }, { "cell_type": "code", - "execution_count": null, + "execution_count": 48, "metadata": { "collapsed": false, "deletable": false, @@ -1346,9 +4094,57 @@ "solution": false } }, + "outputs": [ + { + "ename": "AssertionError", + "evalue": "", + "output_type": "error", + "traceback": [ + "\u001b[1;31m---------------------------------------------------------------------------\u001b[0m", + "\u001b[1;31mAssertionError\u001b[0m Traceback (most recent call last)", + "\u001b[1;32m\u001b[0m in \u001b[0;36m\u001b[1;34m()\u001b[0m\n\u001b[1;32m----> 1\u001b[1;33m \u001b[1;32massert\u001b[0m \u001b[0ms10_featurecounts\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mloc\u001b[0m\u001b[1;33m[\u001b[0m\u001b[1;34m'ENSMUSG00000064842.1'\u001b[0m\u001b[1;33m,\u001b[0m \u001b[1;34m'tpm'\u001b[0m\u001b[1;33m]\u001b[0m \u001b[1;33m==\u001b[0m \u001b[1;36m260.82736102245372\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0m\u001b[0;32m 2\u001b[0m \u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m 3\u001b[0m \u001b[0mprint\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0ms10_featurecounts\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mloc\u001b[0m\u001b[1;33m[\u001b[0m\u001b[1;34m'ENSMUSG00000064842.1'\u001b[0m\u001b[1;33m,\u001b[0m \u001b[1;34m'tpm'\u001b[0m\u001b[1;33m]\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n", + "\u001b[1;31mAssertionError\u001b[0m: " + ] + } + ], + "source": [ + "assert s10_featurecounts.loc['ENSMUSG00000064842.1', 'tpm'] == 260.82736102245372\n", + "\n", + "print(s10_featurecounts.loc['ENSMUSG00000064842.1', 'tpm'])" + ] + }, + { + "cell_type": "code", + "execution_count": 49, + "metadata": { + "collapsed": false + }, + "outputs": [ + { + "data": { + "text/plain": [ + "260.8273610224536" + ] + }, + "execution_count": 49, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "s10_featurecounts.loc['ENSMUSG00000064842.1', 'tpm']" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": { + "collapsed": true + }, "outputs": [], "source": [ - "assert s10_featurecounts.loc['ENSMUSG00000064842.1', 'tpm'] == 260.82736102245372" + "#Again, the numbers are extrememly close but there is a slight difference towards the end due to the amount of sig figs...\n", + "#the assertion has a value of 260.82736102245372 and my code gave a value of 260.8273610224536" ] }, { @@ -1369,7 +4165,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 50, "metadata": { "collapsed": false, "deletable": false, @@ -1381,7 +4177,28 @@ "solution": false } }, - "outputs": [], + "outputs": [ + { + "data": { + "text/plain": [ + "" + ] + }, + "execution_count": 50, + "metadata": {}, + "output_type": "execute_result" + }, + { + "data": { + "image/png": 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+ "text/plain": [ + "" + ] + }, + "metadata": {}, + "output_type": "display_data" + } + ], "source": [ "sns.distplot(s10_featurecounts['tpm'])" ] @@ -1404,7 +4221,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 51, "metadata": { "collapsed": false, "deletable": false, @@ -1416,7 +4233,36 @@ "solution": false } }, - "outputs": [], + "outputs": [ + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/home/ucsd-train27/anaconda3/lib/python3.5/site-packages/matplotlib/__init__.py:892: UserWarning: axes.color_cycle is deprecated and replaced with axes.prop_cycle; please use the latter.\n", + " warnings.warn(self.msg_depr % (key, alt_key))\n" + ] + }, + { + "data": { + "text/plain": [ + "" + ] + }, + "execution_count": 51, + "metadata": {}, + "output_type": "execute_result" + }, + { + "data": { + "image/png": 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ChrStartEndStrandLength/home/ucsd-train27/projects/shalek2013/processed_data/S10.Aligned.out.sorted.bamnew_columnfpkmtpmlog2_tpm
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ENSMUSG00000103377.1chr133657313368549-281900.000.0000000.0000000.000000
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" + ], + "text/plain": [ + " Chr Start \\\n", + "Geneid \n", + "ENSMUSG00000102693.1 chr1 3073253 \n", + "ENSMUSG00000064842.1 chr1 3102016 \n", + "ENSMUSG00000051951.5 chr1;chr1;chr1 3214482;3421702;3670552 \n", + "ENSMUSG00000102851.1 chr1 3252757 \n", + "ENSMUSG00000103377.1 chr1 3365731 \n", + "\n", + " End Strand Length \\\n", + "Geneid \n", + "ENSMUSG00000102693.1 3074322 + 1070 \n", + "ENSMUSG00000064842.1 3102125 + 110 \n", + "ENSMUSG00000051951.5 3216968;3421901;3671498 -;-;- 3634 \n", + "ENSMUSG00000102851.1 3253236 + 480 \n", + "ENSMUSG00000103377.1 3368549 - 2819 \n", + "\n", + " /home/ucsd-train27/projects/shalek2013/processed_data/S10.Aligned.out.sorted.bam \\\n", + "Geneid \n", + "ENSMUSG00000102693.1 0 \n", + "ENSMUSG00000064842.1 980 \n", + "ENSMUSG00000051951.5 0 \n", + "ENSMUSG00000102851.1 0 \n", + "ENSMUSG00000103377.1 0 \n", + "\n", + " new_column fpkm tpm log2_tpm \n", + "Geneid \n", + "ENSMUSG00000102693.1 0.00 0.000000 0.000000 0.000000 \n", + "ENSMUSG00000064842.1 44457830.83 151.953838 260.827361 8.032472 \n", + "ENSMUSG00000051951.5 0.00 0.000000 0.000000 0.000000 \n", + "ENSMUSG00000102851.1 0.00 0.000000 0.000000 0.000000 \n", + "ENSMUSG00000103377.1 0.00 0.000000 0.000000 0.000000 " + ] + }, + "execution_count": 52, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "TPM = s10_featurecounts['tpm']\n", + "\n", + "s10_featurecounts['log2_tpm'] = np.log2(TPM + 1)\n", + "\n", "s10_featurecounts.head()" ] }, { "cell_type": "code", - "execution_count": null, + "execution_count": 53, "metadata": { "collapsed": false, "deletable": false, @@ -1499,7 +4490,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 54, "metadata": { "collapsed": false, "deletable": false, @@ -1511,7 +4502,69 @@ "solution": false } }, - "outputs": [], + "outputs": [ + { + "data": { + "text/html": [ + "
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s10s13
target_id
ENSMUST00000146665.2|ENSMUSG00000033845.13|OTTMUSG00000029329.3|OTTMUST00000072662.2|Mrpl15-004|Mrpl15|1569|UTR5:1-62|CDS:63-569|UTR3:570-1569|0.0000003.952259
ENSMUST00000134384.7|ENSMUSG00000025903.14|OTTMUSG00000021562.4|OTTMUST00000051163.2|Lypla1-002|Lypla1|1136|UTR5:1-126|CDS:127-801|UTR3:802-1136|0.2786692.769812
ENSMUST00000027036.10|ENSMUSG00000025903.14|OTTMUSG00000021562.4|OTTMUST00000051162.1|Lypla1-001|Lypla1|2507|UTR5:1-91|CDS:92-784|UTR3:785-2507|3.1747842.992448
ENSMUST00000081551.13|ENSMUSG00000033813.15|OTTMUSG00000042348.1|OTTMUST00000111602.1|Tcea1-001|Tcea1|2547|UTR5:1-100|CDS:101-1006|UTR3:1007-2547|6.9473511.058026
ENSMUST00000002533.14|ENSMUSG00000002459.17|OTTMUSG00000029338.4|OTTMUST00000072687.1|Rgs20-002|Rgs20|1778|UTR5:1-160|CDS:161-880|UTR3:881-1778|2.7950654.141637
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s10s13
ENSMUSG00000033845.130.0000003.952259
ENSMUSG00000025903.140.2786692.769812
ENSMUSG00000025903.143.1747842.992448
ENSMUSG00000033813.156.9473511.058026
ENSMUSG00000002459.172.7950654.141637
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" + ], + "text/plain": [ + " s10 s13\n", + "ENSMUSG00000033845.13 0.000000 3.952259\n", + "ENSMUSG00000025903.14 0.278669 2.769812\n", + "ENSMUSG00000025903.14 3.174784 2.992448\n", + "ENSMUSG00000033813.15 6.947351 1.058026\n", + "ENSMUSG00000002459.17 2.795065 4.141637" + ] + }, + "execution_count": 57, + "metadata": {}, + "output_type": "execute_result" + } + ], "source": [ "kallisto_log2_tpm_expressed_genes = kallisto_log2_tpm_expressed.copy()\n", "kallisto_log2_tpm_expressed_genes.index = kallisto_log2_tpm_expressed.index.map(lambda x: x.split('|')[1])\n", @@ -1649,7 +4799,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 58, "metadata": { "collapsed": false, "deletable": false, @@ -1661,7 +4811,70 @@ "solution": false } }, - "outputs": [], + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "(6733, 2)\n" + ] + }, + { + "data": { + "text/html": [ + "
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s10s13
ENSMUSG00000000001.40.2736516.259357
ENSMUSG00000000056.75.2181730.000000
ENSMUSG00000000058.611.6094940.344833
ENSMUSG00000000078.62.7237164.196505
ENSMUSG00000000085.160.0000005.360020
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" + ], + "text/plain": [ + " s10 s13\n", + "ENSMUSG00000000001.4 0.273651 6.259357\n", + "ENSMUSG00000000056.7 5.218173 0.000000\n", + "ENSMUSG00000000058.6 11.609494 0.344833\n", + "ENSMUSG00000000078.6 2.723716 4.196505\n", + "ENSMUSG00000000085.16 0.000000 5.360020" + ] + }, + "execution_count": 58, + "metadata": {}, + "output_type": "execute_result" + } + ], "source": [ "kallisto_log2_tpm_expressed_genes_summed = kallisto_log2_tpm_expressed_genes.groupby(level=0, axis=0).sum()\n", "print(kallisto_log2_tpm_expressed_genes_summed.shape)\n", @@ -1686,7 +4899,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 59, "metadata": { "collapsed": false, "deletable": false, @@ -1698,7 +4911,31 @@ "solution": false } }, - "outputs": [], + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "before aligning: (6733,) (46983,)\n", + "after aligning: (46983,) (46983,)\n" + ] + }, + { + "data": { + "text/plain": [ + "ENSMUSG00000000001.4 0.273651\n", + "ENSMUSG00000000003.15 NaN\n", + "ENSMUSG00000000028.14 NaN\n", + "ENSMUSG00000000031.15 NaN\n", + "ENSMUSG00000000037.16 NaN\n", + "Name: s10, dtype: float64" + ] + }, + "execution_count": 59, + "metadata": {}, + "output_type": "execute_result" + } + ], "source": [ "x = kallisto_log2_tpm_expressed_genes_summed['s10']\n", "y = s10_featurecounts['log2_tpm']\n", @@ -1727,7 +4964,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 60, "metadata": { "collapsed": true, "deletable": false, @@ -1747,7 +4984,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 61, "metadata": { "collapsed": false, "deletable": false, @@ -1759,7 +4996,36 @@ "solution": false } }, - "outputs": [], + "outputs": [ + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/home/ucsd-train27/anaconda3/lib/python3.5/site-packages/matplotlib/__init__.py:892: UserWarning: axes.color_cycle is deprecated and replaced with axes.prop_cycle; please use the latter.\n", + " warnings.warn(self.msg_depr % (key, alt_key))\n" + ] + }, + { + "data": { + "text/plain": [ + "" + ] + }, + "execution_count": 61, + "metadata": {}, + "output_type": "execute_result" + }, + { + "data": { + "image/png": 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gZU1TUIkUDt6ZbX346e8qsHb1pW4JB75+h54ZgjOKsnHxnHzsrGl2O8/fPzzq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\n/31t3AYmHYBUQxKGhi3Q6YAx6QbodEBWZirW3Gr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+ "text/plain": [ + "" + ] + }, + "metadata": {}, + "output_type": "display_data" + } + ], "source": [ "sns.jointplot(x, y)" ] @@ -1782,7 +5048,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 62, "metadata": { "collapsed": false, "deletable": false, @@ -1794,7 +5060,36 @@ "solution": false } }, - "outputs": [], + "outputs": [ + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/home/ucsd-train27/anaconda3/lib/python3.5/site-packages/matplotlib/__init__.py:892: UserWarning: axes.color_cycle is deprecated and replaced with axes.prop_cycle; please use the latter.\n", + " warnings.warn(self.msg_depr % (key, alt_key))\n" + ] + }, + { + "data": { + "text/plain": [ + "" + ] + }, + "execution_count": 62, + "metadata": {}, + "output_type": "execute_result" + }, + { + "data": { + "image/png": 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7e6qx8Npir89Xm3Lz91kLry3G9VePcRs1KafpBjoNp0V2HdPX3e053AAh2pGV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\neea8qwq40v+54d+Qnmbf4OqcWvNXA08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ASNgTHeoB7AXwVSnl0RDfpxBA1bZt2zB69Oiw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\nRU5ErkJggg==\n", + "text/plain": [ + "" + ] + }, + "metadata": {}, + "output_type": "display_data" + } + ], "source": [ "sns.jointplot(x, y, stat_func=spearmanr)" ] @@ -1818,8 +5113,7 @@ ] }, { - "cell_type": "code", - "execution_count": null, + "cell_type": "markdown", "metadata": { "collapsed": true, "deletable": false, @@ -1832,9 +5126,8 @@ "solution": true } }, - "outputs": [], "source": [ - "# YOUR CODE HERE" + "The differences in the results primarily arise from the ways in which alignments are generated by kallisto and STAR and the nature of the downstream information one obtains using featurecounts, which is generally more broad. Specifically, kallisto does not actually map or align each individual read from one's dataset of interest to a reference genome or transciptome but, instead, utilizes \"pseudo-alignment\" to determine compatibility between reads and transcripts. This method is much, much faster computationally than more traditional mapping and alignment programs like STAR but confines hits to protein-coding transcripts. Featurecounts, on the other hand, maps to additional and more broad genomic features like exons, genes, and promoters. Although the results obtain from the two programs are similar these different approaches lead to some non-overlapping feature outputs. " ] }, { @@ -1857,7 +5150,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 63, "metadata": { "collapsed": false, "deletable": false, @@ -1869,7 +5162,23 @@ "solution": false } }, - "outputs": [], + "outputs": [ + { + "data": { + "text/plain": [ + "ENSMUSG00000000001.4 -5.985706\n", + "ENSMUSG00000000056.7 5.218173\n", + "ENSMUSG00000000058.6 11.264661\n", + "ENSMUSG00000000078.6 -1.472789\n", + "ENSMUSG00000000085.16 -5.360020\n", + "dtype: float64" + ] + }, + "execution_count": 63, + "metadata": {}, + "output_type": "execute_result" + } + ], "source": [ "kallisto_diff = kallisto_log2_tpm_expressed_genes_summed['s10'] - kallisto_log2_tpm_expressed_genes_summed['s13']\n", "kallisto_diff.head()" @@ -1877,7 +5186,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 64, "metadata": { "collapsed": false, "deletable": false, @@ -1889,7 +5198,28 @@ "solution": false } }, - "outputs": [], + "outputs": [ + { + "data": { + "text/plain": [ + "" + ] + }, + "execution_count": 64, + "metadata": {}, + "output_type": "execute_result" + }, + { + "data": { + "image/png": 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SfmnuyWldriqSt2gwuPsscD/wHPAW8JS7HzSz+8zst3JtniHoqhwGHgd+O3f8ZeBp4FXg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\nPfM1DhMMrwA7zWw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Tuz/o7lvd/UqC98+33f1/A75RrpoAzKwp19vDzJqBXyS4AGRJ36uK\n6DEsQZbcD5G7HzCzvyG4IiAF/La7r1a37Y/N7AMEk85Hgf+rAmoC+LcEl/Q9n9vf9UV3/+1y1mVm\nv5qraz3wd2a2391vL2dN7j5rZvcTXMWVv1z14Gq8diEz+yrwKWBdbr7qIeCPgb81s98keG/92irX\n9HHgHuCN3Jh+lmA49xHgb8pU1xXAX+euJosCX3P3Z8zsxTLWdDF/THlr6iYYassS/H7/irs/Z2b7\nllKXVlcVEZEiFT2UJCIiq0/BICIiRRQMIiJSRMEgIiJFFAwiIlJEwSAiIkUUDCIiUkTBICIiRf5/\nE/Hlh8rb7nUAAAAASUVORK5CYII=\n", + "text/plain": [ + "" + ] + }, + "metadata": {}, + "output_type": "display_data" + } + ], "source": [ "sns.distplot(kallisto_diff)" ] @@ -1918,7 +5248,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 65, "metadata": { "collapsed": false, "deletable": false, @@ -1930,7 +5260,30 @@ "solution": false } }, - "outputs": [], + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "(218,)\n" + ] + }, + { + "data": { + "text/plain": [ + "0 ENSMUSG00000000827.18\n", + "1 ENSMUSG00000001418.13\n", + "2 ENSMUSG00000002699.12\n", + "3 ENSMUSG00000002885.14\n", + "4 ENSMUSG00000002996.17\n", + "dtype: object" + ] + }, + "execution_count": 65, + "metadata": {}, + "output_type": "execute_result" + } + ], "source": [ "kallisto_s10_specific = kallisto_diff > (kallisto_diff.mean() + 2*kallisto_diff.std())\n", "kallisto_s10_specific_genes = pd.Series(kallisto_s10_specific.index[kallisto_s10_specific])\n", @@ -1960,7 +5313,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 66, "metadata": { "collapsed": false, "deletable": false, @@ -1972,17 +5325,59 @@ "solution": true } }, - "outputs": [], - "source": [ - "# YOUR CODE HERE\n", + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "(162,)\n" + ] + }, + { + "data": { + "text/plain": [ + "0 ENSMUSG00000000386.14\n", + "1 ENSMUSG00000000399.10\n", + "2 ENSMUSG00000000581.8\n", + "3 ENSMUSG00000000753.15\n", + "4 ENSMUSG00000001127.12\n", + "5 ENSMUSG00000001289.12\n", + "6 ENSMUSG00000001794.12\n", + "7 ENSMUSG00000002845.14\n", + "8 ENSMUSG00000004296.14\n", + "9 ENSMUSG00000004530.12\n", + "10 ENSMUSG00000004561.14\n", + "11 ENSMUSG00000004562.16\n", + "12 ENSMUSG00000005087.17\n", + "13 ENSMUSG00000005107.13\n", + "14 ENSMUSG00000005354.15\n", + "15 ENSMUSG00000005899.12\n", + "16 ENSMUSG00000006333.14\n", + "17 ENSMUSG00000006360.11\n", + "18 ENSMUSG00000007659.18\n", + "19 ENSMUSG00000007812.16\n", + "dtype: object" + ] + }, + "execution_count": 66, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "kallisto_diff_swap = kallisto_log2_tpm_expressed_genes_summed['s13'] - kallisto_log2_tpm_expressed_genes_summed['s10']\n", + "\n", + "kallisto_s13_specific = kallisto_diff_swap > (kallisto_diff_swap.mean() + 2*kallisto_diff_swap.std())\n", + "\n", + "kallisto_s13_specific_genes = pd.Series(kallisto_s13_specific.index[kallisto_s13_specific])\n", "\n", "print(kallisto_s13_specific_genes.shape)\n", - "kallisto_s13_specific_genes.head()\n" + "kallisto_s13_specific_genes.head(20)\n" ] }, { "cell_type": "code", - "execution_count": null, + "execution_count": 67, "metadata": { "collapsed": true, "deletable": false, @@ -2022,7 +5417,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 68, "metadata": { "collapsed": false, "deletable": false, @@ -2034,7 +5429,23 @@ "solution": false } }, - "outputs": [], + "outputs": [ + { + "data": { + "text/plain": [ + "0 ENSMUSG00000000386\n", + "1 ENSMUSG00000000399\n", + "2 ENSMUSG00000000581\n", + "3 ENSMUSG00000000753\n", + "4 ENSMUSG00000001127\n", + "dtype: object" + ] + }, + "execution_count": 68, + "metadata": {}, + "output_type": "execute_result" + } + ], "source": [ "kallisto_s10_specific_genes_ensembl = kallisto_s10_specific_genes.map(lambda x: x.split('.')[0])\n", "kallisto_s13_specific_genes_ensembl = kallisto_s13_specific_genes.map(lambda x: x.split('.')[0])\n", @@ -2059,7 +5470,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 69, "metadata": { "collapsed": true, "deletable": false, @@ -2095,7 +5506,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 70, "metadata": { "collapsed": false, "deletable": false, @@ -2107,7 +5518,37 @@ "solution": false } }, - "outputs": [], + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "==> kallisto_s10_specific_genes.csv <==\r\n", + "ENSMUSG00000000827\r\n", + "ENSMUSG00000001418\r\n", + "ENSMUSG00000002699\r\n", + "ENSMUSG00000002885\r\n", + "ENSMUSG00000002996\r\n", + "ENSMUSG00000003662\r\n", + "ENSMUSG00000003721\r\n", + "ENSMUSG00000004266\r\n", + "ENSMUSG00000004609\r\n", + "ENSMUSG00000004610\r\n", + "\r\n", + "==> kallisto_s13_specific_genes.csv <==\r\n", + "ENSMUSG00000000386\r\n", + "ENSMUSG00000000399\r\n", + "ENSMUSG00000000581\r\n", + "ENSMUSG00000000753\r\n", + "ENSMUSG00000001127\r\n", + "ENSMUSG00000001289\r\n", + "ENSMUSG00000001794\r\n", + "ENSMUSG00000002845\r\n", + "ENSMUSG00000004296\r\n", + "ENSMUSG00000004530\r\n" + ] + } + ], "source": [ "! head kallisto*specific_genes.csv" ] @@ -2135,8 +5576,7 @@ ] }, { - "cell_type": "code", - "execution_count": null, + "cell_type": "markdown", "metadata": { "collapsed": true, "deletable": false, @@ -2149,9 +5589,8 @@ "solution": true } }, - "outputs": [], "source": [ - "# YOUR CODE HERE" + "The s10-specific genes generated via these kallisto files did not display ontology with any specific biological or cellular processes. However, this data set did yield several matches under the category \"cellular components\". These components which included ER, vesicle, and membrane-related terms indicate an overall role in trafficking, perhaps the vesicular transport of components from one organelle to another. Conversely, the s13 data set yielded gene ontology results with specific cellular and biological processes rather than just singular component matches. These processes were all related to metabolism, specifically macromolecular metabolism, negative regulation of metabolism, and protein binding. " ] }, { @@ -2179,7 +5618,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 71, "metadata": { "collapsed": false, "deletable": false, @@ -2191,16 +5630,169 @@ "solution": true } }, - "outputs": [], - "source": [ - "# YOUR CODE HERE\n", + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "(46983, 9)\n" + ] + }, + { + "data": { + "text/html": [ + "
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ChrStartEndStrandLength/home/ucsd-train01/projects/shalek2013/processed_data/S13.Aligned.out.sorted.bamfpkmtpmlog2_tpm
Geneid
ENSMUSG00000102693.1chr130732533074322+10700000
ENSMUSG00000064842.1chr131020163102125+1100000
ENSMUSG00000051951.5chr1;chr1;chr13214482;3421702;36705523216968;3421901;3671498-;-;-36340000
ENSMUSG00000102851.1chr132527573253236+4800000
ENSMUSG00000103377.1chr133657313368549-28190000
\n", + "
" + ], + "text/plain": [ + " Chr Start \\\n", + "Geneid \n", + "ENSMUSG00000102693.1 chr1 3073253 \n", + "ENSMUSG00000064842.1 chr1 3102016 \n", + "ENSMUSG00000051951.5 chr1;chr1;chr1 3214482;3421702;3670552 \n", + "ENSMUSG00000102851.1 chr1 3252757 \n", + "ENSMUSG00000103377.1 chr1 3365731 \n", + "\n", + " End Strand Length \\\n", + "Geneid \n", + "ENSMUSG00000102693.1 3074322 + 1070 \n", + "ENSMUSG00000064842.1 3102125 + 110 \n", + "ENSMUSG00000051951.5 3216968;3421901;3671498 -;-;- 3634 \n", + "ENSMUSG00000102851.1 3253236 + 480 \n", + "ENSMUSG00000103377.1 3368549 - 2819 \n", + "\n", + " /home/ucsd-train01/projects/shalek2013/processed_data/S13.Aligned.out.sorted.bam \\\n", + "Geneid \n", + "ENSMUSG00000102693.1 0 \n", + "ENSMUSG00000064842.1 0 \n", + "ENSMUSG00000051951.5 0 \n", + "ENSMUSG00000102851.1 0 \n", + "ENSMUSG00000103377.1 0 \n", + "\n", + " fpkm tpm log2_tpm \n", + "Geneid \n", + "ENSMUSG00000102693.1 0 0 0 \n", + "ENSMUSG00000064842.1 0 0 0 \n", + "ENSMUSG00000051951.5 0 0 0 \n", + "ENSMUSG00000102851.1 0 0 0 \n", + "ENSMUSG00000103377.1 0 0 0 " + ] + }, + "execution_count": 71, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "s13_featurecounts = pd.read_table('~/projects/shalek2013/processed_data/s13_featureCounts.txt', skiprows=1, index_col=\"Geneid\")\n", + "\n", + "reads = s13_featurecounts['/home/ucsd-train01/projects/shalek2013/processed_data/S13.Aligned.out.sorted.bam']\n", + "lengths = s13_featurecounts['Length']\n", + "s13_featurecounts['fpkm'] = (reads/(lengths*reads.sum()))*1e9\n", + "\n", + "FPKM = s13_featurecounts['fpkm']\n", + "s13_featurecounts['tpm'] = (FPKM/FPKM.sum())*1e6\n", + "\n", + "TPM = s13_featurecounts['tpm']\n", + "s13_featurecounts['log2_tpm'] = np.log2(TPM+1)\n", + "\n", "print(s13_featurecounts.shape)\n", "s13_featurecounts.head()" ] }, { "cell_type": "code", - "execution_count": null, + "execution_count": 72, "metadata": { "collapsed": false, "deletable": false, @@ -2213,10 +5805,56 @@ "solution": false } }, - "outputs": [], - "source": [ + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "13.1520232866\n" + ] + }, + { + "ename": "AssertionError", + "evalue": "", + "output_type": "error", + "traceback": [ + "\u001b[1;31m---------------------------------------------------------------------------\u001b[0m", + "\u001b[1;31mAssertionError\u001b[0m Traceback (most recent call last)", + "\u001b[1;32m\u001b[0m in \u001b[0;36m\u001b[1;34m()\u001b[0m\n\u001b[0;32m 2\u001b[0m \u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m 3\u001b[0m \u001b[1;32massert\u001b[0m \u001b[0mlen\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0ms13_featurecounts\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mcolumns\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mintersection\u001b[0m\u001b[1;33m(\u001b[0m\u001b[1;33m[\u001b[0m\u001b[1;34m'fpkm'\u001b[0m\u001b[1;33m,\u001b[0m \u001b[1;34m'tpm'\u001b[0m\u001b[1;33m,\u001b[0m \u001b[1;34m'log2_tpm'\u001b[0m\u001b[1;33m]\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m)\u001b[0m \u001b[1;33m==\u001b[0m \u001b[1;36m3\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[1;32m----> 4\u001b[1;33m \u001b[1;32massert\u001b[0m \u001b[0ms13_featurecounts\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mloc\u001b[0m\u001b[1;33m[\u001b[0m\u001b[1;34m'ENSMUSG00000064370.1'\u001b[0m\u001b[1;33m,\u001b[0m \u001b[1;34m'log2_tpm'\u001b[0m\u001b[1;33m]\u001b[0m \u001b[1;33m==\u001b[0m \u001b[1;36m13.15202328657807\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0m\u001b[0;32m 5\u001b[0m \u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m 6\u001b[0m \u001b[1;31m#another decimal point-related assertion error; the value my code yields is 13.152023286578066 and the assertion is\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n", + "\u001b[1;31mAssertionError\u001b[0m: " + ] + } + ], + "source": [ + "print(s13_featurecounts.loc['ENSMUSG00000064370.1', 'log2_tpm'])\n", + "\n", "assert len(s13_featurecounts.columns.intersection(['fpkm', 'tpm', 'log2_tpm'])) == 3\n", - "assert s13_featurecounts.loc['ENSMUSG00000064370.1', 'log2_tpm'] == 13.15202328657807" + "assert s13_featurecounts.loc['ENSMUSG00000064370.1', 'log2_tpm'] == 13.15202328657807\n", + "\n", + "#another decimal point-related assertion error; the value my code yields is 13.152023286578066 and the assertion is \n", + "#specified as 13.15202328657807 (so close!)" + ] + }, + { + "cell_type": "code", + "execution_count": 73, + "metadata": { + "collapsed": false + }, + "outputs": [ + { + "data": { + "text/plain": [ + "13.152023286578066" + ] + }, + "execution_count": 73, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "s13_featurecounts.loc['ENSMUSG00000064370.1', 'log2_tpm']" ] }, { @@ -2237,7 +5875,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 74, "metadata": { "collapsed": false, "deletable": false, @@ -2249,7 +5887,36 @@ "solution": false } }, - "outputs": [], + "outputs": [ + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/home/ucsd-train27/anaconda3/lib/python3.5/site-packages/matplotlib/__init__.py:892: UserWarning: axes.color_cycle is deprecated and replaced with axes.prop_cycle; please use the latter.\n", + " warnings.warn(self.msg_depr % (key, alt_key))\n" + ] + }, + { + "data": { + "text/plain": [ + "" + ] + }, + "execution_count": 74, + "metadata": {}, + "output_type": "execute_result" + }, + { + "data": { + "image/png": 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sVCxppETrhUtLnbig41dZqtMSHKXjbJAkMQSaHUl5vZAF7Ujz+YCte45jysQM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\nWy+IirzC50N7l3/mdEVBBhaU5QXds1E7Q6S0TBZ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LfVlEPBgR34qIlzZdTA+8Anis6/nj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\nxWCSJBXFYJIkFcVgkiQV5X+K4n9xwha3awAAAABJRU5ErkJggg==\n", + "text/plain": [ + "" + ] + }, + "metadata": {}, + "output_type": "display_data" + } + ], "source": [ "sns.jointplot(s10_featurecounts['log2_tpm'], s13_featurecounts['log2_tpm'])" ] @@ -2274,7 +5941,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 75, "metadata": { "collapsed": false, "deletable": false, @@ -2286,16 +5953,41 @@ "solution": true } }, - "outputs": [], - "source": [ - "# YOUR CODE HERE\n", + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "(46983,)\n" + ] + }, + { + "data": { + "text/plain": [ + "Geneid\n", + "ENSMUSG00000102693.1 0.000000\n", + "ENSMUSG00000064842.1 8.032472\n", + "ENSMUSG00000051951.5 0.000000\n", + "ENSMUSG00000102851.1 0.000000\n", + "ENSMUSG00000103377.1 0.000000\n", + "Name: log2_tpm, dtype: float64" + ] + }, + "execution_count": 75, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "featurecounts_diff = s10_featurecounts['log2_tpm'] - s13_featurecounts['log2_tpm']\n", + "\n", "print(featurecounts_diff.shape)\n", "featurecounts_diff.head()" ] }, { "cell_type": "code", - "execution_count": null, + "execution_count": 76, "metadata": { "collapsed": false, "deletable": false, @@ -2308,9 +6000,24 @@ "solution": false } }, - "outputs": [], + "outputs": [ + { + "ename": "AssertionError", + "evalue": "", + "output_type": "error", + "traceback": [ + "\u001b[1;31m---------------------------------------------------------------------------\u001b[0m", + "\u001b[1;31mAssertionError\u001b[0m Traceback (most recent call last)", + "\u001b[1;32m\u001b[0m in \u001b[0;36m\u001b[1;34m()\u001b[0m\n\u001b[1;32m----> 1\u001b[1;33m \u001b[1;32massert\u001b[0m \u001b[0mfeaturecounts_diff\u001b[0m\u001b[1;33m[\u001b[0m\u001b[1;34m'ENSMUSG00000064842.1'\u001b[0m\u001b[1;33m]\u001b[0m \u001b[1;33m==\u001b[0m \u001b[1;36m8.0324720569159282\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0m\u001b[0;32m 2\u001b[0m \u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m 3\u001b[0m \u001b[1;31m#Yet again those last few sig figs prove to be out to get me; my code's value is 8.0324720569159176 but\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m 4\u001b[0m \u001b[1;31m#the assertion wants 8.0324720569159282\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n", + "\u001b[1;31mAssertionError\u001b[0m: " + ] + } + ], "source": [ - "assert featurecounts_diff['ENSMUSG00000064842.1'] == 8.0324720569159282" + "assert featurecounts_diff['ENSMUSG00000064842.1'] == 8.0324720569159282\n", + "\n", + "#Yet again those last few sig figs prove to be out to get me; my code's value is 8.0324720569159176 but \n", + "#the assertion wants 8.0324720569159282" ] }, { @@ -2331,7 +6038,29 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 77, + "metadata": { + "collapsed": false + }, + "outputs": [ + { + "data": { + "text/plain": [ + "8.0324720569159176" + ] + }, + "execution_count": 77, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "featurecounts_diff['ENSMUSG00000064842.1']" + ] + }, + { + "cell_type": "code", + "execution_count": 78, "metadata": { "collapsed": false, "deletable": false, @@ -2343,7 +6072,28 @@ "solution": false } }, - "outputs": [], + "outputs": [ + { + "data": { + "text/plain": [ + "" + ] + }, + "execution_count": 78, + "metadata": {}, + "output_type": "execute_result" + }, + { + "data": { + "image/png": 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+ "text/plain": [ + "" + ] + }, + "metadata": {}, + "output_type": "display_data" + } + ], "source": [ "sns.distplot(featurecounts_diff)" ] @@ -2366,7 +6116,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 79, "metadata": { "collapsed": false, "deletable": false, @@ -2378,7 +6128,35 @@ "solution": false } }, - "outputs": [], + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "(9470,)\n" + ] + }, + { + "data": { + "text/plain": [ + "" + ] + }, + "execution_count": 79, + "metadata": {}, + "output_type": "execute_result" + }, + { + "data": { + "image/png": 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i8RF2nkzyM1es4rmdp3i1f5AvfM257+Gd/Nxb1vOet21h/eplta5mw6ooAMzs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\nAkBEpEn9f2b/UVyEFHJZAAAAAElFTkSuQmCC\n", + "text/plain": [ + "" + ] + }, + "metadata": {}, + "output_type": "display_data" + } + ], "source": [ "featurecounts_diff_nonzero = featurecounts_diff[featurecounts_diff != 0]\n", "print(featurecounts_diff_nonzero.shape)\n", @@ -2413,7 +6191,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 80, "metadata": { "collapsed": false, "deletable": false, @@ -2425,9 +6203,38 @@ "solution": true } }, - "outputs": [], - "source": [ - "# YOUR CODE HERE\n", + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "featurecounts_s10_specific_genes.shape (303,)\n", + "featurecounts_s13_specific_genes.shape (369,)\n" + ] + }, + { + "data": { + "text/plain": [ + "0 ENSMUSG00000081441.3\n", + "1 ENSMUSG00000102664.1\n", + "2 ENSMUSG00000079658.9\n", + "3 ENSMUSG00000062939.11\n", + "4 ENSMUSG00000026094.14\n", + "Name: Geneid, dtype: object" + ] + }, + "execution_count": 80, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "featurecounts_s10_specific = featurecounts_diff_nonzero > (featurecounts_diff_nonzero.mean() + 2*featurecounts_diff_nonzero.std())\n", + "featurecounts_s10_specific_genes = pd.Series(featurecounts_s10_specific.index[featurecounts_s10_specific])\n", + "\n", + "featurecounts_s13_specific = featurecounts_diff_nonzero < (featurecounts_diff_nonzero.mean() - 2*featurecounts_diff_nonzero.std())\n", + "featurecounts_s13_specific_genes = pd.Series(featurecounts_s13_specific.index[featurecounts_s13_specific])\n", + "\n", "print('featurecounts_s10_specific_genes.shape', featurecounts_s10_specific_genes.shape)\n", "print('featurecounts_s13_specific_genes.shape', featurecounts_s13_specific_genes.shape)\n", "\n", @@ -2436,7 +6243,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 81, "metadata": { "collapsed": false, "deletable": false, @@ -2496,7 +6303,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 82, "metadata": { "collapsed": false, "deletable": false, @@ -2508,15 +6315,49 @@ "solution": true } }, - "outputs": [], - "source": [ - "# YOUR CODE HERE\n", - "featurecounts_s13_specific_genes_ensembl.head()" + "outputs": [ + { + "data": { + "text/plain": [ + "0 ENSMUSG00000081441\n", + "1 ENSMUSG00000102664\n", + "2 ENSMUSG00000079658\n", + "3 ENSMUSG00000062939\n", + "4 ENSMUSG00000026094\n", + "5 ENSMUSG00000026034\n", + "6 ENSMUSG00000025967\n", + "7 ENSMUSG00000025962\n", + "8 ENSMUSG00000072109\n", + "9 ENSMUSG00000070034\n", + "10 ENSMUSG00000070031\n", + "11 ENSMUSG00000026223\n", + "12 ENSMUSG00000087538\n", + "13 ENSMUSG00000049866\n", + "14 ENSMUSG00000058904\n", + "15 ENSMUSG00000099363\n", + "16 ENSMUSG00000104044\n", + "17 ENSMUSG00000104060\n", + "18 ENSMUSG00000013275\n", + "19 ENSMUSG00000026421\n", + "Name: Geneid, dtype: object" + ] + }, + "execution_count": 82, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "featurecounts_s10_specific_genes_ensembl = featurecounts_s10_specific_genes.map(lambda x: x.split('.')[0])\n", + "\n", + "featurecounts_s13_specific_genes_ensembl = featurecounts_s13_specific_genes.map(lambda x: x.split('.')[0])\n", + "\n", + "featurecounts_s13_specific_genes_ensembl.head(20)" ] }, { "cell_type": "code", - "execution_count": null, + "execution_count": 83, "metadata": { "collapsed": true, "deletable": false, @@ -2559,7 +6400,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 84, "metadata": { "collapsed": true, "deletable": false, @@ -2573,13 +6414,13 @@ }, "outputs": [], "source": [ - "# Code to write series to file.\n", - "# YOUR CODE HERE" + "featurecounts_s13_specific_genes_ensembl.to_csv('featurecounts_s10_specific_genes.csv', index=False)\n", + "\n", + "featurecounts_s10_specific_genes_ensembl.to_csv('featurecounts_s13_specific_genes.csv', index=False)" ] }, { - "cell_type": "code", - "execution_count": null, + "cell_type": "markdown", "metadata": { "collapsed": true, "deletable": false, @@ -2592,10 +6433,18 @@ "solution": true } }, - "outputs": [], "source": [ - "# YOUR CODE HERE" + "Gene ontology for the genes listed on the s13 featurecounts file seemed to have a common role in dealing with cellular assaults. Specifically, functions listed by the GO database appear to have a shared role in response to environmental stresses, including heat shock and oxidative stress, as well as additional exogenous stresses that activate immune responses, particularly via chemokines. For the s10 dataset, gene functions were related to trafficking again as well as some hits relevant to metabolism this time around. " ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": { + "collapsed": true + }, + "outputs": [], + "source": [] } ], "metadata": { @@ -2619,4 +6468,4 @@ }, "nbformat": 4, "nbformat_minor": 0 -} \ No newline at end of file +}