diff --git a/Dockerfile b/Dockerfile index f80b1ea..a777a49 100644 --- a/Dockerfile +++ b/Dockerfile @@ -16,55 +16,6 @@ RUN apt-get update && apt-get install -y \ apt-utils=2.0.9 \ gdebi-core=0.9.5.7+nmu3 \ dpkg-sig=0.13.1+nmu4 \ - manpages=5.05-1 \ - man-db=2.9.1-1 \ - manpages-posix=2013a-2 \ - tree=1.8.0-1 \ && rm -rf /var/lib/apt/lists/* -RUN conda config --set channel_priority strict && \ - mamba install -y -n base -c conda-forge --override-channels bash_kernel nb_conda_kernels - -COPY programming-R.yaml /tmp -RUN mamba env create --file /tmp/programming-R.yaml && \ - mamba clean -afy - -COPY chipseq.yml /tmp -RUN mamba env create --file /tmp/chipseq.yml && \ - mamba clean -afy - -COPY gwas.yml /tmp -RUN mamba env create --file /tmp/gwas.yml && \ - mamba clean -afy - -COPY stats.yml /tmp -RUN mamba env create --file /tmp/stats.yml && \ - mamba clean -afy - -COPY scrna-seq.yml /tmp -RUN mamba env create --file /tmp/scrna-seq.yml && \ - mamba clean -afy - -COPY imgproc.yml /tmp -RUN mamba env create --file /tmp/imgproc.yml && \ - mamba clean -afy - -COPY rna-seq.yaml /tmp -RUN mamba env create --file /tmp/rna-seq.yaml && \ - mamba clean -afy - -COPY spatial-tx.yml /tmp -RUN mamba env create --file /tmp/spatial-tx.yml && \ - mamba clean -afy - -COPY variant_calling.yml /tmp -RUN mamba env create --file /tmp/variant_calling.yml && \ - mamba clean -afy - -COPY networks.yml /tmp -RUN mamba env create --file /tmp/networks.yml && \ - mamba clean -afy - -RUN yes | unminimize || echo "done" - USER $NB_USER