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As mentioned in the issue #54, the RDP confidence score is not propagated to the krona.
But more importantly, the -c (assignment confidence cutoff) has no effect on nodes:
18941|CVKP01000051.3319.4841_m48Prior=0.004400Length=1515NormPrior=0.004222 Root rootrank 1.0 Bacteria domain 1.0 Firmicutes phylum 1.0 Bacilli class 1.0 Lactobacillales order 1.0 Enterococcaceae family 0.41 Melissococcus genus 0.41
The nodes with confidence < threshold have to be tagged unclassified:
18941|CVKP01000051.3319.4841_m48Prior=0.004400Length=1515NormPrior=0.004222 Root rootrank 1.0 Bacteria domain 1.0 Firmicutes phylum 1.0 Bacilli class 1.0 Lactobacillales order 1.0 unclassified family 0.41 unclassified genus 0.41```
The text was updated successfully, but these errors were encountered:
As mentioned in the issue #54, the RDP confidence score is not propagated to the krona.
But more importantly, the
-c
(assignment confidence cutoff) has no effect on nodes:The nodes with confidence < threshold have to be tagged
unclassified
:The text was updated successfully, but these errors were encountered: