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Move UBERON-HBA bridge files to HBAO repository #3

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hkir-dev opened this issue May 21, 2024 · 0 comments
Open

Move UBERON-HBA bridge files to HBAO repository #3

hkir-dev opened this issue May 21, 2024 · 0 comments
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hkir-dev commented May 21, 2024

Create SSOM mapping files in the HBAO repository that will replace the uberon-bridge-to-hba.owl

This command can be used to generate SSSOM mapping from the uberon-edit.obo https://incenp.org/dvlpt/sssom-java/robot-xref-extract.html (check --ignore-treat-xrefs parameter to only generate HBA mappings)

Sample file exists in FBBT: https://github.com/FlyBase/drosophila-anatomy-developmental-ontology/blob/master/fbbt.sssom.tsv
This is the required example rule file: https://github.com/FlyBase/drosophila-anatomy-developmental-ontology/blob/master/src/scripts/bridging.rules (ignore annotate_subject(IAO:0000589, "%object_label (Drosophila)"); section)

This example GitHub actions can be used for continuous integration: https://github.com/FlyBase/drosophila-anatomy-developmental-ontology/blob/master/.github/workflows/uberon-integration.yml

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