Running cluster step on hypermutated tumour mutations

[bkinnersley]

Hello,

Thank you for this very useful software!

I am trying to run PhylogicNDT.py Cluster on tumours with very large numbers of mutations (e.g. ~900,000) and do not have output even after a week of runtime. I was wondering if there are parameters that could be changed that could help with this step (is there any possibility of parallelising over multiple cores for example?)

Thanks very much

Best wishes

Ben