Allele-specific copy number from PhylogicNDT or ABSOLUTE

[juberpatel]

Hello!

I was wondering How I can answer this question from either PhylogicNDT out or ABSOLUTE output:

For a particular mutation, what is the mutant allele copy number and what is the total copy number?

In the .mut_ccfs.txt file I see Allelic_CN_minor and Allelic_CN_major fields but how do I know if the mutant allele is the major allele or minor allele?

Thanks,

Juber

[juberpatel]

In fact, I notice that values for Allelic_CN_minor and Allelic_CN_major fields are always "nan".

[lincj1994]

Hi. I'm wondering if you have figured it out. Which index means mutant allele CN?