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Annotation used for DepMap 24Q2 release #221

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fgypas opened this issue Aug 23, 2024 · 1 comment

fgypas commented Aug 23, 2024

Hello

I am trying to find the annotation that was used for the 24Q2 release. Can you please let me know what Ensembl/Gencode release did you use? Also some of the files (e..g, the copy number dataset https://depmap.org/portal/data_page/?tab=allData&releasename=DepMap+Public+24Q2&filename=OmicsCNGene.csv) seem to rely on entrez ids. How where these annotated?

Thank you in advance

Kind regards
Foivos

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fgypas commented Aug 23, 2024

It also seems that you are working on a PR to use ensembl gene ids which would be ideal. #220
Any feedback would be appreciated.

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