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HI, thanks for developing this excellent tools and sorry for bothering.
I am running FigR in a subset of large dataset, and now I have ATAC-seq with 15000 cells and RNA-seq with 9000 cells. BUT when I run [pairCells](ATAC = ATAC_PCs, RNA = RNA_PCs,keepUnique = TRUE)
the first time I got an error and suggest me to set options("optmatch_max_problem_size=Inf"),
the second time after change setting I got the error: Job exceeded memory limit of node(19289664).
I want to know is there any possibility to use this tool in large dataset like cell atlas? and how to reduce computation when pairing?
The text was updated successfully, but these errors were encountered:
HI, thanks for developing this excellent tools and sorry for bothering.
I am running FigR in a subset of large dataset, and now I have ATAC-seq with 15000 cells and RNA-seq with 9000 cells. BUT when I run
[pairCells](ATAC = ATAC_PCs, RNA = RNA_PCs,keepUnique = TRUE)the first time I got an error and suggest me to set options("optmatch_max_problem_size=Inf"),
the second time after change setting I got the error: Job exceeded memory limit of node(19289664).
I want to know is there any possibility to use this tool in large dataset like cell atlas? and how to reduce computation when pairing?
The text was updated successfully, but these errors were encountered: